bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_0191_orf3
Length=365
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_010960 replication factor C subunit, putative (EC:2... 482 1e-135
tpv:TP03_0432 replication factor C subunit 4; K10755 replicati... 408 1e-113
cpv:cgd3_1450 replication factor C like AAA+ ATpase ; K10755 r... 388 2e-107
bbo:BBOV_IV002210 21.m03053; replication factor C subunit 4; K... 377 3e-104
xla:431883 rfc2, MGC81391, rfc40; replication factor C (activa... 375 1e-103
mmu:19718 Rfc2, 2610008M13Rik, 40kDa, AI326953, MGC117486, Rec... 375 1e-103
dre:503748 rfc2, zgc:110810; replication factor C (activator 1... 372 9e-103
pfa:PFL2005w replication factor C subunit 4; K10755 replicatio... 362 1e-99
cel:F58F6.4 rfc-2; RFC (DNA replication factor) family member ... 350 4e-96
ath:AT1G63160 replication factor C 40 kDa, putative; K10755 re... 343 6e-94
sce:YOL094C RFC4; Rfc4p; K10755 replication factor C subunit 2/4 336 1e-91
hsa:5982 RFC2, A1, MGC3665, RFC40; replication factor C (activ... 313 6e-85
xla:398706 rfc4, rfc2; replication factor C (activator 1) 4, 3... 215 2e-55
hsa:5984 RFC4, A1, MGC27291, RFC37; replication factor C (acti... 214 4e-55
dre:445385 rfc5, zgc:110313; replication factor C (activator 1... 209 1e-53
xla:443952 MGC80325 protein; K10756 replication factor C subun... 207 5e-53
mmu:72151 Rfc5, 2610020K06Rik, 2610209F07Rik, 36.5kDa, 36kDa, ... 206 9e-53
xla:380369 rfc5, MGC53482; replication factor C (activator 1) ... 205 2e-52
dre:406435 rfc4, rcf4, zgc:64030; replication factor C (activa... 205 3e-52
tpv:TP04_0380 replication factor C subunit 3; K10756 replicati... 202 1e-51
mmu:106344 Rfc4, A1, AI894123, AU040575, RFC37; replication fa... 202 1e-51
tgo:TGME49_013000 activator 1 36 kDa, putative (EC:2.7.7.7); K... 199 1e-50
cpv:cgd8_2940 replication factor C like AAA ATpase ; K10755 re... 199 1e-50
sce:YNL290W RFC3; Rfc3p; K10756 replication factor C subunit 3/5 199 2e-50
ath:AT1G77470 replication factor C 36 kDA, putative; K10756 re... 197 5e-50
ath:AT1G21690 emb1968 (embryo defective 1968); ATP binding / A... 195 2e-49
cel:F44B9.8 ARPA; hypothetical protein; K10756 replication fac... 194 4e-49
sce:YJR068W RFC2; Rfc2p; K10755 replication factor C subunit 2/4 193 1e-48
bbo:BBOV_III002960 17.m07281; hypothetical protein; K10755 rep... 193 1e-48
pfa:PF14_0601 replication factor C3; K10756 replication factor... 191 3e-48
bbo:BBOV_II002510 18.m06203; replication factor C3 protein; K1... 191 4e-48
tpv:TP01_0978 replication factor C subunit 2; K10755 replicati... 188 3e-47
tgo:TGME49_037110 replication factor C small subunit, putative... 183 9e-46
pfa:PFB0840w replication factor C, subunit 2; K10755 replicati... 179 1e-44
cel:F31E3.3 rfc-4; RFC (DNA replication factor) family member ... 177 8e-44
cpv:cgd3_3170 replication factor RFC3 AAA+ ATpase ; K10756 rep... 169 1e-41
hsa:5985 RFC5, MGC1155, RFC36; replication factor C (activator... 140 8e-33
ath:AT5G27740 EMB2775 (EMBRYO DEFECTIVE 2775); DNA binding / n... 113 1e-24
xla:734626 rfc3, MGC115007; replication factor C (activator 1)... 110 8e-24
cel:C39E9.13 rfc-3; RFC (DNA replication factor) family member... 107 1e-22
hsa:5983 RFC3, MGC5276, RFC38; replication factor C (activator... 106 1e-22
mmu:69263 Rfc3, 2810416I22Rik, 38kDa, AU022547, Recc3; replica... 105 4e-22
dre:259256 rfc3, cb275; replication factor C (activator 1) 3; ... 103 1e-21
sce:YBR087W RFC5; Rfc5p; K10756 replication factor C subunit 3/5 102 2e-21
pfa:PF11_0117 replication factor C subunit 5, putative; K10756... 97.8 6e-20
cpv:cgd8_610 DNA replication repC1, AAA+ ATpase with a BRCT do... 94.0 8e-19
cpv:cgd2_3180 replication factor C subunit 5 ; K10756 replicat... 82.8 2e-15
pfa:PFB0895c replication factor C subunit 1, putative; K10754 ... 80.9 6e-15
ath:AT1G14460 DNA polymerase-related 79.7 2e-14
bbo:BBOV_IV003080 21.m02902; replication factor C 38 kDa subun... 79.0 3e-14
> tgo:TGME49_010960 replication factor C subunit, putative (EC:2.7.7.7);
K10755 replication factor C subunit 2/4
Length=336
Score = 482 bits (1240), Expect = 1e-135, Method: Compositional matrix adjust.
Identities = 227/322 (70%), Positives = 270/322 (83%), Gaps = 0/322 (0%)
Query 25 SSSSSSGSSSSSSSGNESIWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPP 84
+ S SG +SS+ +SIWIEKYRP+ LD+VVGND+V++RLRIIA EGNMPHL+LAGPP
Sbjct 15 APQSQSGKDETSSTTLDSIWIEKYRPETLDDVVGNDQVMRRLRIIAREGNMPHLMLAGPP 74
Query 85 GTGKTSSVLCLARALLQSRWRSCCLELNASDERSIDVVRDRIKAFAKERRDLPLGRHKII 144
GTGKTSSVLCL + LL SRWR+ LELNASDER+IDV+R+++K FAKE+RDLP GRHKI+
Sbjct 75 GTGKTSSVLCLCKQLLGSRWRAYTLELNASDERTIDVIREKVKHFAKEKRDLPAGRHKIV 134
Query 145 ILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHL 204
ILDEVD+MTEAAQQALRRIME SDTTRFALACNSS+SVIEPLQSRCAILRF KL D+ L
Sbjct 135 ILDEVDAMTEAAQQALRRIMEQFSDTTRFALACNSSASVIEPLQSRCAILRFRKLDDSQL 194
Query 205 VQRLREVCAKENVTFTDDGIEAIVFSADGDMRSALNNLQSTVSGFGLVNKENVEKVCDTP 264
V+RLR+VCA E + TDDGIEAIVF ADGDMRSALNNLQSTVS FG+VN+ENVEKVCD P
Sbjct 195 VRRLRQVCAMEALQVTDDGIEAIVFCADGDMRSALNNLQSTVSAFGVVNRENVEKVCDNP 254
Query 265 PPEMLRRIMQQCVAGDWYGAQSVARVILSLGYTPLDVVTTFRGVLRRADSELQEHLLLEF 324
PPE +R ++ +C+AG W A +A +L GYTP+DVV T R VL R ++E +EH+LLE+
Sbjct 255 PPEAVRSMLMECLAGKWREAHDIAAELLRRGYTPMDVVLTTRSVLSRFENECKEHILLEY 314
Query 325 LGIVGMTHMTMAGGLSTELQME 346
L VG+ HMTM+ GLST LQ+E
Sbjct 315 LKYVGLAHMTMSAGLSTPLQLE 336
> tpv:TP03_0432 replication factor C subunit 4; K10755 replication
factor C subunit 2/4
Length=324
Score = 408 bits (1049), Expect = 1e-113, Method: Compositional matrix adjust.
Identities = 182/318 (57%), Positives = 251/318 (78%), Gaps = 2/318 (0%)
Query 43 IWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARALLQS 102
IWIEKYRP LD+++GN E+ RL+ IA EGNMP+LLL GPPGTGKT+SVLCLAR LL +
Sbjct 7 IWIEKYRPTTLDDIIGNPEITTRLQFIAKEGNMPNLLLCGPPGTGKTTSVLCLARELLGT 66
Query 103 RWRSCCLELNASDERSIDVVRDRIKAFAKERRDLPLGRHKIIILDEVDSMTEAAQQALRR 162
++S +ELNASD+R +DVVR+ IK FAK+ LP +HKI+ILDEVDSMTE AQQALRR
Sbjct 67 HFKSAVIELNASDDRGVDVVRESIKNFAKKSLVLPPNKHKIVILDEVDSMTEPAQQALRR 126
Query 163 IMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCAKENVTFTDD 222
IMEL+S TTRFALACN S+ +IEP+QSRCA++R++KL D +++RL +C EN+T+TD+
Sbjct 127 IMELYSSTTRFALACNQSNKIIEPIQSRCAVIRYSKLQDEQILKRLVTICDMENLTYTDE 186
Query 223 GIEAIVFSADGDMRSALNNLQSTVSGFGLVNKENVEKVCDTPPPEMLRRIMQQCVAGDWY 282
G+EA++FSADGD+R A+NNLQ +GF +V K+NV KVCD P P++++++++ C+ G+W
Sbjct 187 GMEALLFSADGDLRRAVNNLQIVSAGFKVVTKDNVFKVCDIPSPDLIQKMLENCLNGNWR 246
Query 283 GAQSVARVILSLGYTPLDVVTTFRGVLRRADSELQEHLLLEFLGIVGMTHMTMAGGLSTE 342
A +L LG++P+D++ T R VL+ D+ EH+LLE++ V ++HMTM GLST+
Sbjct 247 QAHEKVDQLLELGHSPVDILVTMRNVLKTMDAP--EHVLLEYIKSVALSHMTMVNGLSTQ 304
Query 343 LQMEKMLAQLCKVAISFR 360
LQ+EK+LA LCK+A++ R
Sbjct 305 LQLEKLLANLCKIALALR 322
> cpv:cgd3_1450 replication factor C like AAA+ ATpase ; K10755
replication factor C subunit 2/4
Length=339
Score = 388 bits (996), Expect = 2e-107, Method: Compositional matrix adjust.
Identities = 177/314 (56%), Positives = 242/314 (77%), Gaps = 2/314 (0%)
Query 43 IWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARALLQS 102
IWIEKYRP+ LDE+VGN+EVL RL+++A GNMP+LLL+GPPGTGKT+S+ CLA +L S
Sbjct 17 IWIEKYRPKILDEMVGNEEVLTRLKVLAKHGNMPNLLLSGPPGTGKTTSIHCLASEMLGS 76
Query 103 RWRSCCLELNASDERSIDVVRDRIKAFAKERRDLPLGRHKIIILDEVDSMTEAAQQALRR 162
++ LELNASD+R IDVVRD+IK+FA+E+ DLP GRHKI+ILDEVDSMT++AQQALRR
Sbjct 77 KYGRAVLELNASDDRGIDVVRDKIKSFAREKIDLPEGRHKIVILDEVDSMTDSAQQALRR 136
Query 163 IMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCAKENVTFTDD 222
+ME++S++TRFALACN S+ +IEP+QSRCAI+R++KL+DA + +RL E+ EN+ + D
Sbjct 137 LMEVYSESTRFALACNQSTKIIEPIQSRCAIIRYSKLTDAQIRKRLFEIIKMENIPYVDS 196
Query 223 GIEAIVFSADGDMRSALNNLQSTVSGFGLVNKENVEKVCDTPPPEMLRRIMQQCVAGDWY 282
GI+ +VF+ADGDMR +NNLQ+T GF +V+++NV KV D P PE ++ I+ CV +W
Sbjct 197 GIDTLVFTADGDMRIVINNLQATYHGFSMVSRDNVLKVSDIPSPEKIKSILDSCVKCNWR 256
Query 283 GAQSVARVILSLGYTPLDVVTTFRGVLRRADSELQEHLLLEFLGIVGMTHMTMAGGLSTE 342
A S+ + GY+PLD+V T R VL+R +L E +LE+L VG H M G +T
Sbjct 257 LAHSIVEELFIGGYSPLDIVITMRNVLKRY--QLPERAILEYLKEVGRCHFVMLDGCATP 314
Query 343 LQMEKMLAQLCKVA 356
LQ++K+L QLC ++
Sbjct 315 LQLDKLLGQLCMIS 328
> bbo:BBOV_IV002210 21.m03053; replication factor C subunit 4;
K10755 replication factor C subunit 2/4
Length=306
Score = 377 bits (969), Expect = 3e-104, Method: Compositional matrix adjust.
Identities = 172/304 (56%), Positives = 232/304 (76%), Gaps = 2/304 (0%)
Query 43 IWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARALLQS 102
IWIEKYRP L +V+GN EV +RL +IA EGNMP+LLL GPPGTGKT+S+LCLA +L +
Sbjct 5 IWIEKYRPGILKDVIGNPEVTRRLEVIAREGNMPNLLLCGPPGTGKTTSILCLAHEMLGN 64
Query 103 RWRSCCLELNASDERSIDVVRDRIKAFAKERRDLPLGRHKIIILDEVDSMTEAAQQALRR 162
+++ LELNASD+R +DVVR IK FAK+ LP +HKIIILDEVDSMTEAAQQALRR
Sbjct 65 HFKNAVLELNASDDRGVDVVRGAIKNFAKKSVVLPPNKHKIIILDEVDSMTEAAQQALRR 124
Query 163 IMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCAKENVTFTDD 222
IME++S TTRFALACN S+ +IEP+QSRCA++R+ L D ++ RL +C +ENV +T+D
Sbjct 125 IMEIYSKTTRFALACNQSTKIIEPIQSRCAVIRYEPLQDEMILTRLIHICKEENVQYTND 184
Query 223 GIEAIVFSADGDMRSALNNLQSTVSGFGLVNKENVEKVCDTPPPEMLRRIMQQCVAGDWY 282
G+EA++F+A+GDMR A+NNLQ+ SG+ L+ +NV KVCD P PE++R+++Q C+ G W
Sbjct 185 GMEALLFTANGDMRRAVNNLQNVSSGYNLITSQNVYKVCDVPSPELIRKLLQDCLDGQWR 244
Query 283 GAQSVARVILSLGYTPLDVVTTFRGVLRRADSELQEHLLLEFLGIVGMTHMTMAGGLSTE 342
A A +L+LG++P D++ T R VL+ + EH+L EFL + ++HMTM GLS+
Sbjct 245 PAHEKAEDLLALGHSPFDILMTVRSVLKTLKAP--EHILCEFLKTISLSHMTMISGLSSP 302
Query 343 LQME 346
LQ+E
Sbjct 303 LQLE 306
> xla:431883 rfc2, MGC81391, rfc40; replication factor C (activator
1) 2, 40kDa; K10755 replication factor C subunit 2/4
Length=348
Score = 375 bits (964), Expect = 1e-103, Method: Compositional matrix adjust.
Identities = 180/342 (52%), Positives = 249/342 (72%), Gaps = 4/342 (1%)
Query 18 SSSSSSGSSSSSSGSSSSSSSGNESIWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPH 77
S++ SG+ ++ + S + + E W+EKYRP L+E+VGN+E + RL + A EGN+P+
Sbjct 8 SAAGESGTKQAAPATKSLAVT-YELPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVPN 66
Query 78 LLLAGPPGTGKTSSVLCLARALLQSRWRSCCLELNASDERSIDVVRDRIKAFAKERRDLP 137
+++AGPPGTGKT+S+LCLARALL + LELNAS++R IDVVR++IK FA+++ LP
Sbjct 67 IIIAGPPGTGKTTSILCLARALLGPTMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLP 126
Query 138 LGRHKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFT 197
GRHKIIILDE DSMT+ AQQALRR ME++S TTRFALACN+S +IEP+QSRCA+LR+T
Sbjct 127 KGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYT 186
Query 198 KLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSALNNLQSTVSGFGLVNKENV 257
KL+DA ++ RL +V KE V TDDG+EAIVF+A GDMR ALNN+QST +GFG VN NV
Sbjct 187 KLTDAQVLARLMDVVEKEKVQCTDDGLEAIVFTAQGDMRQALNNVQSTCAGFGFVNSTNV 246
Query 258 EKVCDTPPPEMLRRIMQQCVAGDWYGAQSVARVILSLGYTPLDVVTTFRGVLRRADSELQ 317
KVCD P P +++ ++Q CV + A + + LGY+P D++ V + ++
Sbjct 247 FKVCDEPHPLLVKEMLQHCVNANIDEAYKIVAHLWKLGYSPEDIIGNIFRVCK--TFQMP 304
Query 318 EHLLLEFLGIVGMTHMTMAGGLSTELQMEKMLAQLC-KVAIS 358
E+L LEF+ +G THM +A G+++ LQM +LA+LC K A+S
Sbjct 305 EYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTAVS 346
> mmu:19718 Rfc2, 2610008M13Rik, 40kDa, AI326953, MGC117486, Recc2;
replication factor C (activator 1) 2; K10755 replication
factor C subunit 2/4
Length=349
Score = 375 bits (963), Expect = 1e-103, Method: Compositional matrix adjust.
Identities = 180/338 (53%), Positives = 243/338 (71%), Gaps = 8/338 (2%)
Query 23 SGSSSSSSGSS------SSSSSGNESIWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMP 76
SG S SG+ S ++ E W+EKYRP L+E+VGN++ + RL + A EGN+P
Sbjct 6 SGCDPSESGAQEPSPVPSKTAGHYELPWVEKYRPLKLNEIVGNEDTVSRLEVFAREGNVP 65
Query 77 HLLLAGPPGTGKTSSVLCLARALLQSRWRSCCLELNASDERSIDVVRDRIKAFAKERRDL 136
++++AGPPGTGKT+S+LCLARALL + LELNAS++R IDVVR++IK FA+++ L
Sbjct 66 NIIIAGPPGTGKTTSILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL 125
Query 137 PLGRHKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRF 196
P GRHKIIILDE DSMT+ AQQALRR ME++S TTRFALACN+S +IEP+QSRCA+LR+
Sbjct 126 PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRY 185
Query 197 TKLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSALNNLQSTVSGFGLVNKEN 256
TKL+DA ++ RL V KE V +TDDG+EAI+F+A GDMR ALNNLQST SGFG +N EN
Sbjct 186 TKLTDAQVLTRLMNVIEKEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSEN 245
Query 257 VEKVCDTPPPEMLRRIMQQCVAGDWYGAQSVARVILSLGYTPLDVVTTFRGVLRRADSEL 316
V KVCD P P +++ ++Q CV + A + + LGY+P DV+ V + +
Sbjct 246 VFKVCDEPHPLLVKEMIQHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTF--PM 303
Query 317 QEHLLLEFLGIVGMTHMTMAGGLSTELQMEKMLAQLCK 354
E+L LEF+ +G THM +A G+++ LQM +LA+LC+
Sbjct 304 AEYLKLEFIKEIGYTHMKVAEGVNSLLQMAGLLARLCQ 341
> dre:503748 rfc2, zgc:110810; replication factor C (activator
1) 2; K10755 replication factor C subunit 2/4
Length=349
Score = 372 bits (956), Expect = 9e-103, Method: Compositional matrix adjust.
Identities = 172/338 (50%), Positives = 242/338 (71%), Gaps = 2/338 (0%)
Query 17 SSSSSSSGSSSSSSGSSSSSSSGNESIWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMP 76
S + + G + +++ E W+EKYRP L+E+VGN+E + RL + A EGN+P
Sbjct 6 SEQTQADGPPKKDETAPKPTTTAYELPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNVP 65
Query 77 HLLLAGPPGTGKTSSVLCLARALLQSRWRSCCLELNASDERSIDVVRDRIKAFAKERRDL 136
++++AGPPGTGKT+S+LCLARALL + LELNAS++R IDVVR++IK FA+++ L
Sbjct 66 NIIIAGPPGTGKTTSILCLARALLGPAMKDAVLELNASNDRGIDVVRNKIKMFAQQKVTL 125
Query 137 PLGRHKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRF 196
P GRHKIIILDE DSMT+ AQQALRR ME++S TTRFALACN+S +IEP+QSRCA+LR+
Sbjct 126 PKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRY 185
Query 197 TKLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSALNNLQSTVSGFGLVNKEN 256
+KL D ++ RL EV KEN+ T+DG+EAI+F+A GDMR ALNNLQST SGFG +N EN
Sbjct 186 SKLRDEQIMMRLTEVVEKENLHVTNDGLEAIIFTAQGDMRQALNNLQSTNSGFGYINSEN 245
Query 257 VEKVCDTPPPEMLRRIMQQCVAGDWYGAQSVARVILSLGYTPLDVVTTFRGVLRRADSEL 316
V KVCD P P +++ +++ CV + A + + SLGY+P D++ V + ++
Sbjct 246 VFKVCDEPHPLLVKSMLEHCVNANIDEAYKIIEQLWSLGYSPEDIIGNIFRVCK--TFQM 303
Query 317 QEHLLLEFLGIVGMTHMTMAGGLSTELQMEKMLAQLCK 354
E+L LE++ +G THM +A G+++ LQM +L +LC+
Sbjct 304 AEYLKLEYIKEIGYTHMKVAEGVNSLLQMAGLLGRLCR 341
> pfa:PFL2005w replication factor C subunit 4; K10755 replication
factor C subunit 2/4
Length=336
Score = 362 bits (930), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 175/321 (54%), Positives = 232/321 (72%), Gaps = 1/321 (0%)
Query 40 NESIWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARAL 99
N IWIEKYRP+ LDEVVGN V+ L+ I GNMP+LLLAG PGTGKT+S+LCLA +
Sbjct 14 NIDIWIEKYRPEFLDEVVGNPFVINTLKSIITSGNMPNLLLAGAPGTGKTTSILCLASEM 73
Query 100 LQSRWRSCCLELNASDERSIDVVRDRIKAFAKERRDLPLGRHKIIILDEVDSMTEAAQQA 159
L ++ + LELNASD+R I+V+RDRIK+FAKE LP G+HKIIILDEVDSMT AAQQ+
Sbjct 74 LGNQAKKAVLELNASDDRGINVIRDRIKSFAKEIISLPPGKHKIIILDEVDSMTTAAQQS 133
Query 160 LRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCAKENVTF 219
LRRIMEL+SDTTRFALACN S +I+ LQSRCAI+R+ KLSD +++R+ ++C EN+ +
Sbjct 134 LRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYFKLSDDQVLKRILKICDLENIKY 193
Query 220 TDDGIEAIVFSADGDMRSALNNLQSTVSGFGLVNKENVEKVCDTPPPEMLRRIMQQCVAG 279
TDDG++A+ F ADGD+R A+N LQST +G ++NKENV +CD P PE + +++ CV
Sbjct 194 TDDGLDALTFIADGDLRKAVNCLQSTYAGLEVINKENVLHICDIPSPERIENLLKHCVNS 253
Query 280 DWYGAQSVARVILSLGYTPLDVVTTFRGVLRRADSELQEHLLLEFLGIVGMTHMTMAGGL 339
+W A +A ++ G+TP D+ T VLRR + E + +EFL I M TMA GL
Sbjct 254 EWKKAHDIAYSMIKEGHTPYDISLTSSNVLRRFNIG-SEVIQIEFLKIGAMACNTMATGL 312
Query 340 STELQMEKMLAQLCKVAISFR 360
++ +Q++K+LA C A R
Sbjct 313 TSVIQLDKLLADWCMAAKILR 333
> cel:F58F6.4 rfc-2; RFC (DNA replication factor) family member
(rfc-2); K10755 replication factor C subunit 2/4
Length=334
Score = 350 bits (898), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 162/324 (50%), Positives = 231/324 (71%), Gaps = 2/324 (0%)
Query 34 SSSSSGNESIWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVL 93
S S + W+EKYRP+ L ++VGN+ +++RL++I EGN+P+++L+GPPG GKT+SV
Sbjct 2 SKSEKQQLAPWVEKYRPKVLADIVGNENIVERLKVIGHEGNVPNIVLSGPPGCGKTTSVW 61
Query 94 CLARALLQSRWRSCCLELNASDERSIDVVRDRIKAFAKERRDLPLGRHKIIILDEVDSMT 153
LAR LL + + LELNASDER IDVVR RIK FA+ + LP GRHKIIILDE DSMT
Sbjct 62 ALARELLGDKVKEAVLELNASDERGIDVVRHRIKTFAQTKVTLPEGRHKIIILDEADSMT 121
Query 154 EAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCA 213
+ AQQALRR ME+++ TTRFALACN S +IEP+QSRCA+LR+TKLS L+ R++EV
Sbjct 122 DGAQQALRRTMEMYTKTTRFALACNQSEKIIEPIQSRCALLRYTKLSPVQLLTRVKEVAK 181
Query 214 KENVTFTDDGIEAIVFSADGDMRSALNNLQSTVSGFGLVNKENVEKVCDTPPPEMLRRIM 273
E V + D G+EAI+F+A GDMR ALNNLQ+TV+ + LVNKENV KVCD P P+++ +++
Sbjct 182 AEKVNYDDGGLEAILFTAQGDMRQALNNLQATVNAYELVNKENVLKVCDEPHPDLMIKML 241
Query 274 QQCVAGDWYGAQSVARVILSLGYTPLDVVTTFRGVLRRAD--SELQEHLLLEFLGIVGMT 331
C ++ A + LG++ D+V+T V++ + + E L +E++ + M
Sbjct 242 HYCTDRKFFEASKIIHEFHRLGFSSDDIVSTLFRVVKTVELSKNVSEQLRMEYIRQIAMC 301
Query 332 HMTMAGGLSTELQMEKMLAQLCKV 355
HM + GL+++LQ+ +++A LC+V
Sbjct 302 HMRIVQGLTSKLQLSRLIADLCRV 325
> ath:AT1G63160 replication factor C 40 kDa, putative; K10755
replication factor C subunit 2/4
Length=333
Score = 343 bits (880), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 159/317 (50%), Positives = 230/317 (72%), Gaps = 2/317 (0%)
Query 39 GNESIWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARA 98
G W+EKYRP + ++VGN++ + RL++IA +GNMP+L+L+GPPGTGKT+S+L LA
Sbjct 12 GYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHE 71
Query 99 LLQSRWRSCCLELNASDERSIDVVRDRIKAFAKERRDLPLGRHKIIILDEVDSMTEAAQQ 158
LL + ++ LELNASD+R IDVVR++IK FA+++ LP GRHK++ILDE DSMT AQQ
Sbjct 72 LLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTSGAQQ 131
Query 159 ALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCAKENVT 218
ALRR +E++S++TRFALACN+S+ +IEP+QSRCA++RF++LSD ++ RL V A E V
Sbjct 132 ALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVVAAEKVP 191
Query 219 FTDDGIEAIVFSADGDMRSALNNLQSTVSGFGLVNKENVEKVCDTPPPEMLRRIMQQCVA 278
+ +G+EAI+F+ADGDMR ALNNLQ+T SGF VN+ENV KVCD P P ++ I++ +
Sbjct 192 YVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPLHVKNIVRNVLE 251
Query 279 GDWYGAQSVARVILSLGYTPLDVVTTFRGVLRRADSELQEHLLLEFLGIVGMTHMTMAGG 338
+ A + + LGY+P D++TT +++ D + E+L LEF+ G HM + G
Sbjct 252 SKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYD--MAEYLKLEFMKETGFAHMRICDG 309
Query 339 LSTELQMEKMLAQLCKV 355
+ + LQ+ +LA+L V
Sbjct 310 VGSYLQLCGLLAKLSIV 326
> sce:YOL094C RFC4; Rfc4p; K10755 replication factor C subunit
2/4
Length=323
Score = 336 bits (861), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 161/314 (51%), Positives = 234/314 (74%), Gaps = 7/314 (2%)
Query 44 WIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARALLQSR 103
W+EKYRPQ L ++VGN E + RL+ IA +GNMPH++++G PG GKT+SV CLA LL
Sbjct 11 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS 70
Query 104 WRSCCLELNASDERSIDVVRDRIKAFAKERRDLPLGRHKIIILDEVDSMTEAAQQALRRI 163
+ LELNASD+R IDVVR++IK FA+++ LP G+HKI+ILDE DSMT AQQALRR
Sbjct 71 YADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRT 130
Query 164 MELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCAKENVTFTDDG 223
MEL+S++TRFA ACN S+ +IEPLQSRCAILR++KLSD +++RL ++ E+V +T+DG
Sbjct 131 MELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDG 190
Query 224 IEAIVFSADGDMRSALNNLQSTVSGFGLVNKENVEKVCDTPPPEMLRRIMQQCVAGDWYG 283
+EAI+F+A+GDMR A+NNLQSTV+G GLVN +NV K+ D+P P ++++++ +A +
Sbjct 191 LEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVDSPHPLIVKKML---LASNLED 247
Query 284 AQSVARVIL-SLGYTPLDVVTT-FRGVLRRADSELQEHLLLEFLGIVGMTHMTMAGGLST 341
+ + R L GY+ +D+VTT FR + + ++++E + LE + +G+THM + G+ T
Sbjct 248 SIQILRTDLWKKGYSSIDIVTTSFR--VTKNLAQVKESVRLEMIKEIGLTHMRILEGVGT 305
Query 342 ELQMEKMLAQLCKV 355
LQ+ MLA++ K+
Sbjct 306 YLQLASMLAKIHKL 319
> hsa:5982 RFC2, A1, MGC3665, RFC40; replication factor C (activator
1) 2, 40kDa; K10755 replication factor C subunit 2/4
Length=320
Score = 313 bits (802), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 156/344 (45%), Positives = 221/344 (64%), Gaps = 37/344 (10%)
Query 12 AMNGSSSSSSSSGSSSSSSGSSSSSSSGNESI-WIEKYRPQALDEVVGNDEVLQRLRIIA 70
A+ G + + S + + S + S+G+ + W+EKYRP L+E+VGN++ + RL + A
Sbjct 5 AVCGGAGEVEAQDSDPAPAFSKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFA 64
Query 71 LEGNMPHLLLAGPPGTGKTSSVLCLARALLQSRWRSCCLELNASDERSIDVVRDRIKAFA 130
EGN+P++++AGPPGTGKT+S+LCLARALL + LELNAS+
Sbjct 65 REGNVPNIIIAGPPGTGKTTSILCLARALLGPALKDAMLELNASN--------------- 109
Query 131 KERRDLPLGRHKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSR 190
DSMT+ AQQALRR ME++S TTRFALACN+S +IEP+QSR
Sbjct 110 -------------------DSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSR 150
Query 191 CAILRFTKLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSALNNLQSTVSGFG 250
CA+LR+TKL+DA ++ RL V KE V +TDDG+EAI+F+A GDMR ALNNLQST SGFG
Sbjct 151 CAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFG 210
Query 251 LVNKENVEKVCDTPPPEMLRRIMQQCVAGDWYGAQSVARVILSLGYTPLDVVTTFRGVLR 310
+N ENV KVCD P P +++ ++Q CV + A + + LGY+P D++ V +
Sbjct 211 FINSENVFKVCDEPHPLLVKEMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCK 270
Query 311 RADSELQEHLLLEFLGIVGMTHMTMAGGLSTELQMEKMLAQLCK 354
++ E+L LEF+ +G THM +A G+++ LQM +LA+LC+
Sbjct 271 T--FQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQ 312
> xla:398706 rfc4, rfc2; replication factor C (activator 1) 4,
37kDa; K10755 replication factor C subunit 2/4
Length=363
Score = 215 bits (547), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 133/337 (39%), Positives = 188/337 (55%), Gaps = 14/337 (4%)
Query 25 SSSSSSGSSSSSSSGNESIWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPP 84
+S+S +GS+ S W+EKYRP+ +DEV DEV+ L+ ++P+LL GPP
Sbjct 20 ASASGTGSTGESKKQKPIPWVEKYRPKCVDEVAFQDEVVAVLKKSLQGADLPNLLFYGPP 79
Query 85 GTGKTSSVLCLARALLQSR-WRSCCLELNASDERSIDVVRDRIKAFAK-----ERRD-LP 137
GTGKTS++L +R L +R LELNASDER I VVR+++K FA+ R D P
Sbjct 80 GTGKTSTILAASRELYGPELFRQRVLELNASDERGIQVVREKVKNFAQLTVGGTRSDGKP 139
Query 138 LGRHKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFT 197
KIIILDE DSMT AAQ ALRR ME S TTRF L CN S +IEPL SRC+ RF
Sbjct 140 CPPFKIIILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFK 199
Query 198 KLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSALNNLQST--VSGFGLVNKE 255
L+D QRL +C KENV T++ I +V ++GD+R A+ LQS ++ + +E
Sbjct 200 PLADKIQTQRLLSICEKENVQITNEAISCLVEVSEGDLRKAITFLQSAARLTRGKEITEE 259
Query 256 NVEKVCDTPPPEMLRRIMQQCVAGDWYGAQSVARVILSLGYTPLDVVTTFRGV-LRRAD- 313
V ++ P E L ++ C +G + ++ + +++ G+ +V V L R D
Sbjct 260 IVTEIAGVVPKETLDSVLVVCQSGSFEKLENFVKDLINNGHAATQLVNQLHDVILERGDL 319
Query 314 SELQEHLLLEFLGIVGMTHMTMAGGLSTELQMEKMLA 350
++ Q+ + E L V + G LQM + A
Sbjct 320 TDKQKAFITEKLADV---DKCLTDGADEYLQMLGLFA 353
> hsa:5984 RFC4, A1, MGC27291, RFC37; replication factor C (activator
1) 4, 37kDa; K10755 replication factor C subunit 2/4
Length=363
Score = 214 bits (545), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 131/330 (39%), Positives = 190/330 (57%), Gaps = 15/330 (4%)
Query 27 SSSSGSSSSSSSGNESIWIEKYRPQALDEVVGNDEVLQRLRIIALEG-NMPHLLLAGPPG 85
++S+GSS + W+EKYRP+ +DEV +EV+ L+ +LEG ++P+LL GPPG
Sbjct 23 AASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKK-SLEGADLPNLLFYGPPG 81
Query 86 TGKTSSVLCLARALLQSR-WRSCCLELNASDERSIDVVRDRIKAFAK-----ERRD-LPL 138
TGKTS++L AR L +R LELNASDER I VVR+++K FA+ R D P
Sbjct 82 TGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPC 141
Query 139 GRHKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTK 198
KI+ILDE DSMT AAQ ALRR ME S TTRF L CN S +IEPL SRC+ RF
Sbjct 142 PPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKP 201
Query 199 LSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSALNNLQST--VSGFGLVNKEN 256
LSD QRL ++ KENV +D+GI +V ++GD+R A+ LQS ++G + ++
Sbjct 202 LSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKV 261
Query 257 VEKVCDTPPPEMLRRIMQQCVAGDWYGAQSVARVILSLGYTPLDVVTTFRGVLRRAD-SE 315
+ + P E + + C +G + ++V + ++ G+ +V V+ + S+
Sbjct 262 ITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENNLSD 321
Query 316 LQEHLLLEFLGIVGMTHMTMAGGLSTELQM 345
Q+ ++ E L V +A G LQ+
Sbjct 322 KQKSIITEKLAEV---DKCLADGADEHLQL 348
> dre:445385 rfc5, zgc:110313; replication factor C (activator
1) 5; K10756 replication factor C subunit 3/5
Length=334
Score = 209 bits (533), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/316 (38%), Positives = 180/316 (56%), Gaps = 9/316 (2%)
Query 44 WIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARALLQSR 103
W+EKYRPQ LD+++ + ++L ++ E +PHLL GPPGTGKTS++L AR L + +
Sbjct 16 WVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTILACARQLYKDK 75
Query 104 -WRSCCLELNASDERSIDVVRDRIKAFAKERRDLPLGRHKIIILDEVDSMTEAAQQALRR 162
+ S LELNASD+R IDVVR I +FA R G K++ILDE D+MT+ AQ ALRR
Sbjct 76 EFNSMVLELNASDDRGIDVVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRR 134
Query 163 IMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCAKENVTFTDD 222
++E ++ TRF L CN S +I LQSRC RF LS ++ RL V +E++ T D
Sbjct 135 VIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQESIDITPD 194
Query 223 GIEAIVFSADGDMRSALNNLQSTVSGFGLVNKENVEKVCDTPPPEMLRRIMQQCVAGDWY 282
G++AIV + GDMR +LN LQST +G V +E V P + I+ + D+
Sbjct 195 GMKAIVTLSTGDMRRSLNILQSTHMAYGKVTEETVYTCTGHPLRSDIANILDWALNKDFT 254
Query 283 GAQSVARVILSL-GYTPLDVVTTFRGVLRRAD--SELQEHLLLEFLGIVGMTHMTMAGGL 339
A + + +L G D++T ++ R D ++ LL++ I +A G
Sbjct 255 TAYNQILELKTLKGLALHDILTEVHLLIHRVDFPPSIRMGLLIKLADI----EYRLASGT 310
Query 340 STELQMEKMLAQLCKV 355
S ++Q+ M+A V
Sbjct 311 SEKIQLSSMVAAFQAV 326
> xla:443952 MGC80325 protein; K10756 replication factor C subunit
3/5
Length=335
Score = 207 bits (527), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 179/311 (57%), Gaps = 9/311 (2%)
Query 44 WIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARALLQSR 103
W+EKYRPQ LDE++ + ++L ++ E +PHLL GPPGTGKTS++L A+ L + R
Sbjct 17 WVEKYRPQTLDELISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYKDR 76
Query 104 -WRSCCLELNASDERSIDVVRDRIKAFAKERRDLPLGRHKIIILDEVDSMTEAAQQALRR 162
+ S LELNASD+R ID+VR + +FA R G K++ILDE D+MT+ AQ ALRR
Sbjct 77 EFNSMVLELNASDDRGIDIVRGPVLSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRR 135
Query 163 IMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCAKENVTFTDD 222
++E ++ TRF L CN S +I LQSRC RF LS ++ RL V +E+V + D
Sbjct 136 VIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSEMMIPRLEHVVKEEHVDISPD 195
Query 223 GIEAIVFSADGDMRSALNNLQSTVSGFGLVNKENVEKVCDTPPPEMLRRIMQQCVAGDWY 282
G++A+V ++GDMR +LN LQST + V ++ V P + I+ + D+
Sbjct 196 GMKALVTLSNGDMRRSLNILQSTNMAYSKVTEDTVYTCTGHPLRSDIANILDWMLNKDFT 255
Query 283 GAQSVARVILSL-GYTPLDVVTTFRGVLRRAD--SELQEHLLLEFLGIVGMTHMTMAGGL 339
A + +L G D++T + R D + ++ HLL++ I +A G
Sbjct 256 SAYKNIMELKTLKGLALHDILTEIHLYVHRVDFPALVRIHLLVKMADI----EYRLASGT 311
Query 340 STELQMEKMLA 350
S ++Q+ M+A
Sbjct 312 SEKIQLSSMIA 322
> mmu:72151 Rfc5, 2610020K06Rik, 2610209F07Rik, 36.5kDa, 36kDa,
MGC113787, Recc5; replication factor C (activator 1) 5; K10756
replication factor C subunit 3/5
Length=339
Score = 206 bits (525), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 122/330 (36%), Positives = 188/330 (56%), Gaps = 9/330 (2%)
Query 25 SSSSSSGSSSSSSSGNESIWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPP 84
++++ S +++ W+EKYRPQ L +++ + ++L ++ E +PHLLL GPP
Sbjct 2 TAAAPSQQRPAAARARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPP 61
Query 85 GTGKTSSVLCLARALLQSR-WRSCCLELNASDERSIDVVRDRIKAFAKERRDLPLGRHKI 143
GTGKTS++L A+ L + + + S LELNASD+R ID+VR I +FA R G K+
Sbjct 62 GTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKL 120
Query 144 IILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAH 203
+ILDE D+MT+ AQ ALRR++E ++ TRF L CN S +I LQSRC RF L+
Sbjct 121 VILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPEL 180
Query 204 LVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSALNNLQSTVSGFGLVNKENVEKVCDT 263
+V RL V +ENV ++DG++A+V + GDMR ALN LQST FG V +E V
Sbjct 181 MVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGH 240
Query 264 PPPEMLRRIMQQCVAGDWYGA-QSVARVILSLGYTPLDVVTTFRGVLRRAD--SELQEHL 320
P + I+ + D+ A +++ + G D++T + R D S ++ HL
Sbjct 241 PLKTDIANILDWMLNQDFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHL 300
Query 321 LLEFLGIVGMTHMTMAGGLSTELQMEKMLA 350
L + I ++ G S ++Q+ ++A
Sbjct 301 LTKMADI----EYRLSVGTSEKIQLSSLIA 326
> xla:380369 rfc5, MGC53482; replication factor C (activator 1)
5, 36.5kDa; K10756 replication factor C subunit 3/5
Length=335
Score = 205 bits (522), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 179/311 (57%), Gaps = 9/311 (2%)
Query 44 WIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARALLQSR 103
W+EKYRPQ LD+++ + ++L ++ E +PHLL GPPGTGKTS++L A+ L + R
Sbjct 17 WVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILACAKQLYKDR 76
Query 104 -WRSCCLELNASDERSIDVVRDRIKAFAKERRDLPLGRHKIIILDEVDSMTEAAQQALRR 162
+ S LELNASD+R ID+VR I +FA R G K++ILDE D+MT+ AQ ALRR
Sbjct 77 EFNSMVLELNASDDRGIDIVRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRR 135
Query 163 IMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCAKENVTFTDD 222
++E ++ TRF L CN S +I LQSRC RF LS ++ RL V +E V + D
Sbjct 136 VIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSDMMIPRLEHVVKEERVDISPD 195
Query 223 GIEAIVFSADGDMRSALNNLQSTVSGFGLVNKENVEKVCDTPPPEMLRRIMQQCVAGDWY 282
G++A+V ++GDMR +LN LQST +G V ++ V P + I+ + D+
Sbjct 196 GMKALVTLSNGDMRRSLNILQSTNMAYGKVTEDTVYTCTGHPLRSDIANILDWMLNKDFT 255
Query 283 GAQSVARVILSL-GYTPLDVVTTFRGVLRRAD--SELQEHLLLEFLGIVGMTHMTMAGGL 339
A + +L G D++T + R + + ++ HLL++ I +A G
Sbjct 256 SAYKNIMELKTLKGLALHDILTEVHLYVHRVNFPASVRMHLLVKMADI----EYRLASGT 311
Query 340 STELQMEKMLA 350
S ++Q+ ++A
Sbjct 312 SEKIQLSSLIA 322
> dre:406435 rfc4, rcf4, zgc:64030; replication factor C (activator
1) 4; K10755 replication factor C subunit 2/4
Length=358
Score = 205 bits (521), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 122/303 (40%), Positives = 180/303 (59%), Gaps = 11/303 (3%)
Query 17 SSSSSSSGSSSSSSGSSSSSSSGNESIWIEKYRPQALDEVVGNDEVLQRLRIIALEG-NM 75
SSS S SSS SS W+EKYRP+ +DEV +EV+ L+ +LEG ++
Sbjct 8 SSSQSVKAQKPSSSSSSGGEKKQRAVPWVEKYRPKCVDEVAFQEEVVAVLKK-SLEGADL 66
Query 76 PHLLLAGPPGTGKTSSVLCLARALL-QSRWRSCCLELNASDERSIDVVRDRIKAFAK--E 132
P+LL GPPGTGKTS++L AR L +R LELNASDER I VVR+++K FA+
Sbjct 67 PNLLFYGPPGTGKTSTILAAARELYGPDLYRQRVLELNASDERGIQVVREKVKRFAQLTV 126
Query 133 RRDLPLGR----HKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQ 188
P G+ KIIILDE DSMT AAQ ALRR ME S TTRF L CN S +IEPL
Sbjct 127 AGTRPDGKTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLT 186
Query 189 SRCAILRFTKLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSALNNLQS--TV 246
SRC+ RF L++ +R+ E+C KEN+ +T +G++A+V ++GD+R A+ LQS +
Sbjct 187 SRCSKFRFKPLANDVQQERILEICRKENLKYTTEGVDALVRVSEGDLRKAITFLQSGARL 246
Query 247 SGFGLVNKENVEKVCDTPPPEMLRRIMQQCVAGDWYGAQSVARVILSLGYTPLDVVTTFR 306
+ + ++ + ++ PP++++ ++ C G + + + ++ GY +++
Sbjct 247 NSEREITEQTIIEIAGVVPPKVIQSLLHICYKGTFEKLEVAVKDMIDQGYAATNLLNQLH 306
Query 307 GVL 309
V+
Sbjct 307 DVI 309
> tpv:TP04_0380 replication factor C subunit 3; K10756 replication
factor C subunit 3/5
Length=347
Score = 202 bits (515), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 135/211 (63%), Gaps = 9/211 (4%)
Query 44 WIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARALLQSR 103
W+EKYRP+ L +++ +++++ L I A +G +PHLL GPPG+GKTS++L ++R L S+
Sbjct 9 WVEKYRPETLQDIISHEDIMSTLMIFAEKGQLPHLLFHGPPGSGKTSTILAISRYLYGSQ 68
Query 104 WRSCCLELNASDERSIDVVRDRIKAFAKERR---------DLPLGRHKIIILDEVDSMTE 154
LELNASDER ID VRD+IKAF++ D P K+IILDE D MT
Sbjct 69 RNGFVLELNASDERGIDTVRDQIKAFSETSNTFTSTMPVDDPPRTNLKLIILDEADQMTN 128
Query 155 AAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCAK 214
AAQ ALRRIME++S+ RF L CN + +I P+QSRC RF L + +R+RE+
Sbjct 129 AAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKSDVVRERIREIAKL 188
Query 215 ENVTFTDDGIEAIVFSADGDMRSALNNLQST 245
ENV TD ++A+V GDMR LN LQ T
Sbjct 189 ENVKITDCALDALVEIGQGDMRRVLNCLQVT 219
> mmu:106344 Rfc4, A1, AI894123, AU040575, RFC37; replication
factor C (activator 1) 4; K10755 replication factor C subunit
2/4
Length=364
Score = 202 bits (514), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 120/287 (41%), Positives = 170/287 (59%), Gaps = 11/287 (3%)
Query 26 SSSSSGSSSSSSSGNESIWIEKYRPQALDEVVGNDEVLQRLRIIALEG-NMPHLLLAGPP 84
+ +++GSS + W+EKYRP+ +DEV DEV+ LR +LEG ++P+LL GPP
Sbjct 22 TPATAGSSGETKKVKPVPWVEKYRPKCVDEVAFQDEVVAVLRK-SLEGADLPNLLFYGPP 80
Query 85 GTGKTSSVLCLARALLQSR-WRSCCLELNASDERSIDVVRDRIKAFAK-----ERRD-LP 137
GTGKTS++L AR L +R LELNASDER I VVR+++K FA+ R D P
Sbjct 81 GTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKP 140
Query 138 LGRHKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFT 197
KI+ILDE DSMT AAQ ALRR ME S TTRF L CN S +IEPL SRC+ RF
Sbjct 141 CPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFK 200
Query 198 KLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSALNNLQST--VSGFGLVNKE 255
LSD +RL ++ KENV ++ I +V ++GD+R A+ LQS ++G V+++
Sbjct 201 PLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDLRKAITFLQSATRLTGGKEVSED 260
Query 256 NVEKVCDTPPPEMLRRIMQQCVAGDWYGAQSVARVILSLGYTPLDVV 302
+ + P + I C +G + ++V + ++ G+ +V
Sbjct 261 VITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLIDEGHAATQLV 307
> tgo:TGME49_013000 activator 1 36 kDa, putative (EC:2.7.7.7);
K10756 replication factor C subunit 3/5
Length=398
Score = 199 bits (507), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/374 (32%), Positives = 196/374 (52%), Gaps = 38/374 (10%)
Query 15 GSSSSSSSSGSSSSSSGSSSSSSSGNESI-WIEKYRPQALDEVVGNDEVLQRLRIIALEG 73
SSS + G + + S S+ + ++ W+EKYRP+ L +V+ +D++++ +R +G
Sbjct 7 ASSSEPKNLGKAPEKASSQLPSAHADRALPWVEKYRPERLSDVLAHDDIIRTIRNYVHKG 66
Query 74 NMPHLLLAGPPGTGKTSSVLCLARALLQSRWRSCCLELNASDERSIDVVRDRIKAFAK-- 131
+PHLL GPPGTGKTS++L +A+ S R+ LELNASD+R I+ VR++IK FA+
Sbjct 67 QLPHLLFHGPPGTGKTSTILAVAKEFYGSAVRTHVLELNASDDRGINTVREQIKTFAETS 126
Query 132 ----ERRDLPLGRH--------------------------KIIILDEVDSMTEAAQQALR 161
++ L G+ K+IILDE D MT AAQ ALR
Sbjct 127 STSFQQNRLIFGKSAVPATEAAEATSSHGQEKKGQGGPSLKLIILDEADQMTNAAQNALR 186
Query 162 RIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCAKENVTFTD 221
RIME ++ RF L CN + + +QSRC RFT +S A L + ++ E + +D
Sbjct 187 RIMEAYARNVRFCLICNFVNKITPAIQSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSD 246
Query 222 DGIEAIVFSADGDMRSALNNLQ-STVSGFG-LVNKENVEKVCDTPPPEMLRRIMQQCVAG 279
DG++A+V A GDMR LN +Q S ++ G VN + V + PPP + + ++ +
Sbjct 247 DGLDALVKIARGDMRRLLNCMQASHLAHPGEEVNADIVHRTLGLPPPSEVTTMFERLLVA 306
Query 280 DWYG-AQSVARVILSLGYTPLDVVTTFRGVLRRADSELQEHLLLEFLGIVGMTHMTMAGG 338
D++ + + ++ + GY D V F + D ++L+ F+ + +A G
Sbjct 307 DFFACCKELDELVTAKGYAMRDWVIAFHERILLVD--WPANVLITFVSRLADLEERLATG 364
Query 339 LSTELQMEKMLAQL 352
S +QM ++A
Sbjct 365 ASEAVQMHAVVAAF 378
> cpv:cgd8_2940 replication factor C like AAA ATpase ; K10755
replication factor C subunit 2/4
Length=335
Score = 199 bits (506), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/254 (42%), Positives = 157/254 (61%), Gaps = 13/254 (5%)
Query 36 SSSGNESIWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCL 95
SS+ + ++W+EKYRP + ++ + +V+ L + GNMPHLL GPPGTGKTS+VL L
Sbjct 1 SSTMSSNLWVEKYRPGNVLDISHHKDVVSMLSHVLKNGNMPHLLFHGPPGTGKTSAVLAL 60
Query 96 ARALL-QSRWRSCCLELNASDERSIDVVRDRIKAFAK---------ERRDLPLGRHKIII 145
+R L + +++ LELNASDER I VVRD+IK++ + E L KI+I
Sbjct 61 SRELFGPNEYKNRILELNASDERGISVVRDKIKSWTRQVVQCNKTHEITGNLLPSWKIVI 120
Query 146 LDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLV 205
LDE + MT AQ ALRRI+E+ S TRF + CN S +IEPL SRCA RF +S +
Sbjct 121 LDEAEMMTADAQSALRRIIEVSSKNTRFVIICNYISKIIEPLASRCAKFRFQPISANSQI 180
Query 206 QRLREVCAKENVTFTDDGIEAIVFSADGDMRSALNNLQSTVSGFGLVNKENVEKVCD--- 262
+RL+ +C++E+V++ D +E IV + GD+R +N LQS FG + ++ + D
Sbjct 181 ERLKYICSQEDVSYEDGVLETIVNLSQGDLRRGINILQSASELFGKDKRISMSSILDVSG 240
Query 263 TPPPEMLRRIMQQC 276
PP +++ RI+ C
Sbjct 241 VPPIKIIERIINSC 254
> sce:YNL290W RFC3; Rfc3p; K10756 replication factor C subunit
3/5
Length=340
Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 114/308 (37%), Positives = 174/308 (56%), Gaps = 15/308 (4%)
Query 32 SSSSSSSGNESI-WIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTS 90
S+S+ E++ W+EKYRP+ LDEV G +EV+ +R EG +PHLL GPPGTGKTS
Sbjct 2 STSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTS 61
Query 91 SVLCLARALLQSRWRSCCLELNASDERSIDVVRDRIKAFAKERRDLPLGRHKIIILDEVD 150
+++ LAR + + + LELNASD+R IDVVR++IK FA R+ G K+IILDE D
Sbjct 62 TIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKG-FKLIILDEAD 120
Query 151 SMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLRE 210
+MT AAQ ALRR++E ++ TRF + N + + L SRC RF L + +R+
Sbjct 121 AMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIAN 180
Query 211 VCAKENVTFTDDGIEAIVFSADGDMRSALNNLQSTVSGFGLVNKENVE-----KVCDTPP 265
V E + + + +A++ ++GDMR LN LQS + +++ + + C P
Sbjct 181 VLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPR 240
Query 266 PEMLRRIMQQCVAGDWYGAQ-SVARVILSLGYTPLDVVTTFRGVLRRADSELQE-----H 319
P L+ +++ + DW A ++ +V + G +D++ +L D ELQ H
Sbjct 241 PSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILE--DYELQNEETRVH 298
Query 320 LLLEFLGI 327
LL + I
Sbjct 299 LLTKLADI 306
> ath:AT1G77470 replication factor C 36 kDA, putative; K10756
replication factor C subunit 3/5
Length=369
Score = 197 bits (501), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 98/204 (48%), Positives = 139/204 (68%), Gaps = 3/204 (1%)
Query 44 WIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARALLQSR 103
W+EKYRPQ+LD+V + +++ + + E +PHLLL GPPGTGKTS++L +AR L +
Sbjct 41 WVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGPK 100
Query 104 WRSCCLELNASDERSIDVVRDRIKAFAKERRDLPLGRH--KIIILDEVDSMTEAAQQALR 161
+R+ LELNASD+R IDVVR +I+ FA + LG+ K+++LDE D+MT+ AQ ALR
Sbjct 101 YRNMILELNASDDRGIDVVRQQIQDFAST-QSFSLGKSSVKLVLLDEADAMTKDAQFALR 159
Query 162 RIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCAKENVTFTD 221
R++E ++ +TRFAL N + +I LQSRC RF L H+ QRL+ V E + +D
Sbjct 160 RVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSD 219
Query 222 DGIEAIVFSADGDMRSALNNLQST 245
G+ A+V ++GDMR ALN LQST
Sbjct 220 CGLAALVRLSNGDMRKALNILQST 243
> ath:AT1G21690 emb1968 (embryo defective 1968); ATP binding /
ATPase/ DNA binding / DNA clamp loader/ nucleoside-triphosphatase/
nucleotide binding; K10755 replication factor C subunit
2/4
Length=339
Score = 195 bits (496), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/311 (35%), Positives = 165/311 (53%), Gaps = 9/311 (2%)
Query 44 WIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARALLQSR 103
W+EKYRP+ + +V +EV++ L + PH+L GPPGTGKT++ L +A L
Sbjct 11 WVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGPE 70
Query 104 -WRSCCLELNASDERSIDVVRDRIKAFA-------KERRDLPLGRHKIIILDEVDSMTEA 155
++S LELNASD+R I+VVR +IK FA + P KIIILDE DSMTE
Sbjct 71 LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTED 130
Query 156 AQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCAKE 215
AQ ALRR ME +S TRF CN S +IEPL SRCA RF LS+ + R+ +C +E
Sbjct 131 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEE 190
Query 216 NVTFTDDGIEAIVFSADGDMRSALNNLQSTVSGFG-LVNKENVEKVCDTPPPEMLRRIMQ 274
++ + + + + GD+R A+ LQS FG + ++ V P E++ ++
Sbjct 191 GLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFT 250
Query 275 QCVAGDWYGAQSVARVILSLGYTPLDVVTTFRGVLRRADSELQEHLLLEFLGIVGMTHMT 334
C +GD+ A I++ GY ++ ++ ADS++ + + + T
Sbjct 251 ACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKR 310
Query 335 MAGGLSTELQM 345
+ G LQ+
Sbjct 311 LVDGADEYLQL 321
> cel:F44B9.8 ARPA; hypothetical protein; K10756 replication factor
C subunit 3/5
Length=368
Score = 194 bits (494), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 111/344 (32%), Positives = 182/344 (52%), Gaps = 18/344 (5%)
Query 15 GSSSSSSSSGSSSSSSGSSSSSSSGNESIWIEKYRPQALDEVVGNDEVLQRLRIIALEGN 74
GS + S S + + ++++ + W+EKYRP LDE+V ++++++ L
Sbjct 2 GSRTGSREEHSLQFLNLTKMTTTTASNLPWVEKYRPSKLDELVAHEQIVKTLTKFIENRT 61
Query 75 MPHLLLAGPPGTGKTSSVLCLARALLQ-SRWRSCCLELNASDERSIDVVRDRIKAFAKER 133
+PHLL GPPGTGKT++VL AR + ++ S LELNASDER IDVVR+ I FA+ +
Sbjct 62 LPHLLFYGPPGTGKTTTVLAAARQMYSPTKMASMVLELNASDERGIDVVRNTIVNFAQTK 121
Query 134 R-----------DLPLGRHKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSS 182
+P K++ILDE D+MT+ AQ ALRR++E ++D RF + CN +S
Sbjct 122 GLQAFSTSSNTGTVPF---KLVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLAS 178
Query 183 VIEPLQSRCAILRFTKLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSALNNL 242
++ +QSRC RF L +V RL + E + T DG +A++ + GDMR+ +N L
Sbjct 179 IVPAIQSRCTRFRFAPLDQKLIVPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVINTL 238
Query 243 QSTVSGFGLVNKENVEKVCDTPPPEMLRRIMQQCVAGDWYGA-QSVARVILSLGYTPLDV 301
QST F V++ V + P P+ ++ +++ + ++ + GY DV
Sbjct 239 QSTAMSFDTVSENTVYQCIGQPTPKEMKEVVKTLLNDPSKKCMNTIQTKLFENGYALQDV 298
Query 302 VTTFRGVLRRADSELQEHLLLEFLGIVGMTHMTMAGGLSTELQM 345
+T + D + + + + +G ++ G S E Q+
Sbjct 299 ITHLHDFVFTLD--IPDEAMSAIITGLGEVEENLSTGCSNETQL 340
> sce:YJR068W RFC2; Rfc2p; K10755 replication factor C subunit
2/4
Length=353
Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/275 (39%), Positives = 154/275 (56%), Gaps = 16/275 (5%)
Query 44 WIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARALL-QS 102
W+EKYRP+ LDEV D + L+ N+PH+L GPPGTGKTS++L L + L
Sbjct 27 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query 103 RWRSCCLELNASDERSIDVVRDRIKAFAK------ERRDL---PLGRHKIIILDEVDSMT 153
+S LELNASDER I +VR+++K FA+ + DL P +KIIILDE DSMT
Sbjct 87 LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT 146
Query 154 EAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCA 213
AQ ALRR ME +S TRF L CN + +I+PL SRC+ RF L ++ + RLR +
Sbjct 147 ADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFISE 206
Query 214 KENVTFTDDGIEAIVFSADGDMRSALNNLQSTVSGFGL------VNKENVEKVCDTPPPE 267
+ENV D +E I+ + GD+R + LQS G + VE++ P +
Sbjct 207 QENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPHD 266
Query 268 MLRRIMQQCVAGDWYGAQSVARVILSLGYTPLDVV 302
+L I+++ +GD+ + + G++ VV
Sbjct 267 ILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVV 301
> bbo:BBOV_III002960 17.m07281; hypothetical protein; K10755 replication
factor C subunit 2/4
Length=336
Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/275 (38%), Positives = 153/275 (55%), Gaps = 14/275 (5%)
Query 44 WIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARALLQSR 103
W+EKYRP +LD++V + + +R I +MPH++ GPPGTGKTS+ L +AR +
Sbjct 7 WVEKYRPASLDDIVFHTNAMTTMRHIVESYDMPHMIFHGPPGTGKTSAALAIARQIYGPE 66
Query 104 -WRSCCLELNASDERSIDVVRDRIKAFAK-----ERRDLPLGR----HKIIILDEVDSMT 153
+ LELNASDER I+VVR+RIK + + R + GR K+IILDE D +T
Sbjct 67 GMKERVLELNASDERGINVVRERIKTYTRLNISSNRVNTQTGRVMPNFKMIILDEADMIT 126
Query 154 EAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCA 213
AQ ALRRI+E S+ +RF L CN +I P+ SRC+ F +S ++RLR +C
Sbjct 127 PDAQAALRRIIENFSNISRFILICNYVHKIIGPIYSRCSAFHFKPISQDAQIERLRYICT 186
Query 214 KENVTFTDDGIEAIVFSADGDMRSALNNLQSTVSGFGLVNKENVEKVCDTPPPEMLRRIM 273
E++ + D ++ + + GDMR ++ LQST S F V +E V V PP E++ I
Sbjct 187 AESLEYEDHALDFLTQVSQGDMRRSVTILQSTASLFNKVTEEAVRNVSGYPPKEIVNEIF 246
Query 274 QQCVAGDWYGAQSVARVILSLGYTPLDVVTTFRGV 308
C Q V + + Y +V T F+ +
Sbjct 247 ATCKG----TTQDVEELCKKIIYDGWEVATLFQQI 277
> pfa:PF14_0601 replication factor C3; K10756 replication factor
C subunit 3/5
Length=344
Score = 191 bits (486), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 154/265 (58%), Gaps = 6/265 (2%)
Query 44 WIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARALLQSR 103
W+EKYRP L++++ +++V+ ++ +G +PHLLL GPPGTGKTS++L + + L +
Sbjct 15 WVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGDK 74
Query 104 WRSCCLELNASDERSIDVVRDRIKAFAKERRDLPLGRH---KIIILDEVDSMTEAAQQAL 160
S LELNASD+R I+V+RD+IK FA+ + K+IILDE D MT AQ A+
Sbjct 75 RSSFVLELNASDDRGINVIRDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNAM 134
Query 161 RRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCAKENVTFT 220
RRIME ++ RF L CN + + +QSRC RF L ++ + ++ ENV T
Sbjct 135 RRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNLT 194
Query 221 DDGIEAIVFSADGDMRSALNNLQ-STVSGFGLVNKENV-EKVCDTPPPEMLRRIMQQCVA 278
+ GI++++ GDMR LN LQ ++S LV ENV D P P ++I++
Sbjct 195 EGGIDSLIRVGHGDMRRILNCLQVVSLSHKNLVIDENVILSTLDIPLPSETKKILEYFTK 254
Query 279 GDWYGA-QSVARVILSLGYTPLDVV 302
G + + V+ + GY+ D++
Sbjct 255 GSIKESYEFVSNLQYDKGYSTKDIM 279
> bbo:BBOV_II002510 18.m06203; replication factor C3 protein;
K10756 replication factor C subunit 3/5
Length=348
Score = 191 bits (485), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 115/336 (34%), Positives = 182/336 (54%), Gaps = 34/336 (10%)
Query 44 WIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARALLQSR 103
W+EKYRP++ +++ +D++L L A +G +PHLL GPPGTGKTS+++ ++R L S
Sbjct 9 WVEKYRPESFSDIISHDDILSTLMNFAEKGQLPHLLFHGPPGTGKTSTIMAVSRYLYGSH 68
Query 104 WRSCCLELNASDERSIDVVRDRIKAFAKERRDL----------PLGRHKIIILDEVDSMT 153
S +ELNASDER I+ VR++IK FA+ P K+IILDE D MT
Sbjct 69 RHSYVMELNASDERGIETVREQIKTFAETSNTFSSGIVGSDSGPRTNLKLIILDEADQMT 128
Query 154 EAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCA 213
AAQ +LRRIME++S RF L CN + +I P+QSRC RF L + + +R ++
Sbjct 129 NAAQNSLRRIMEIYSSNVRFCLICNFMNRIIPPIQSRCTGFRFPPLKNDVVKRRTADIAK 188
Query 214 KENVTFTDDGIEAIVFSADGDMRSALNNLQSTVSGFG-----LVNKENVEKVCDTPPP-- 266
E +T ++ ++ + GDMR LN LQ T G ++ + V P P
Sbjct 189 AEGLTVSECALDTLAEIGQGDMRRVLNCLQVTAMSIGATRDKVITSDVVISTAGLPNPTE 248
Query 267 --EMLRRIMQQ----CVAGDWYGAQSVARVILSLGYTPLDVVTT-FRGVLRRADSELQEH 319
++L+R+MQ+ CV D+ V + GY+ D+VT +R +LR +
Sbjct 249 ISKLLQRLMQESFKDCV--DY-----VVTLNQVQGYSVEDLVTALYRSILR---IDWPNV 298
Query 320 LLLEFLGIVGMTHMTMAGGLSTELQMEKMLAQLCKV 355
++++ L +G ++ G S +Q+ +++ +V
Sbjct 299 VIVQLLIRLGDIEQRLSAGASPYIQIASLVSAFAEV 334
> tpv:TP01_0978 replication factor C subunit 2; K10755 replication
factor C subunit 2/4
Length=335
Score = 188 bits (478), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 95/245 (38%), Positives = 139/245 (56%), Gaps = 14/245 (5%)
Query 44 WIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARALLQ-S 102
W+EKYRP+ + +V+ + + + I NMPH++ GPPGTGKTS+ L +AR +
Sbjct 9 WVEKYRPKKISDVIFQTQAVSIMEQIVETFNMPHMIFHGPPGTGKTSAALAMARQIYGLE 68
Query 103 RWRSCCLELNASDERSIDVVRDRIKAFAK-----------ERRDLPLGRHKIIILDEVDS 151
R LELNASDER IDVVRDRIK + + R +P +K+IILDE D
Sbjct 69 GMRERVLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMP--NYKMIILDEADM 126
Query 152 MTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREV 211
+T AQ ALRR++E +S +RF L CN +I P+ SRC++ F + V RL+ +
Sbjct 127 ITADAQAALRRVIENYSSISRFVLICNYLHKIIGPIYSRCSVFHFKPIETNSQVDRLKYI 186
Query 212 CAKENVTFTDDGIEAIVFSADGDMRSALNNLQSTVSGFGLVNKENVEKVCDTPPPEMLRR 271
C +E +TF +E + + GDMR ++ LQST + + + + V PP E++ R
Sbjct 187 CNQEGITFDQKALEFLTTVSSGDMRKSITILQSTACLYNEITENAINSVSGKPPKEVVER 246
Query 272 IMQQC 276
I + C
Sbjct 247 IFEVC 251
> tgo:TGME49_037110 replication factor C small subunit, putative
(EC:2.7.7.7); K10755 replication factor C subunit 2/4
Length=357
Score = 183 bits (464), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 109/288 (37%), Positives = 159/288 (55%), Gaps = 15/288 (5%)
Query 17 SSSSSSSGSSSSSSGSSSSSSSGNESIWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMP 76
S+SS S S+ + SS W+EKYRP+ ++++ E + LR I GNMP
Sbjct 6 SASSVEKAPSPFSTAAPPRVSSAQVVPWVEKYRPRRVEDMAHQVEPKKMLRRILETGNMP 65
Query 77 HLLLAGPPGTGKTSSVLCLARALL-QSRWRSCCLELNASDERSIDVVRDRIKAFAKER-- 133
HLL GPPGTGKTS+ L L R L + ++ LELNASD+R I VVR+RIK + K
Sbjct 66 HLLFYGPPGTGKTSAALALVRELFGREEAKNRLLELNASDDRGIKVVRERIKQYTKTNIA 125
Query 134 ---------RDLPLGRHKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVI 184
R++P KI+ILDE D MT+ AQ ALRRIME S TTRF + CN +I
Sbjct 126 KGKINPETGREMPTW--KIVILDEADMMTQDAQSALRRIMEAFSRTTRFIIICNYVHRII 183
Query 185 EPLQSRCAILRFTKLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSALNNLQS 244
+P+ SRC+ RF ++ R+R +C E + T ++A++ + GD+R A+ LQS
Sbjct 184 DPIFSRCSPHRFEPVARDAQEARIRHICDSEGLVVTSGAVDALLRISQGDLRRAVTLLQS 243
Query 245 TVSGF-GLVNKENVEKVCDTPPPEMLRRIMQQCVAGDWYGAQSVARVI 291
S + ++++ + +V PP ++ ++ C A + V VI
Sbjct 244 AASIYDDNLHEDAILEVAGQPPARIVTDFLRACQASPSQASSEVDNVI 291
> pfa:PFB0840w replication factor C, subunit 2; K10755 replication
factor C subunit 2/4
Length=330
Score = 179 bits (454), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/295 (33%), Positives = 159/295 (53%), Gaps = 15/295 (5%)
Query 44 WIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARALL-QS 102
W+EKYRP+ LD++V + + L+ + NMPHL+ GPPGTGKTS++ LA L +
Sbjct 6 WVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFGKE 65
Query 103 RWRSCCLELNASDERSIDVVRDRIKAFAK----------ERRDLPLGRHKIIILDEVDSM 152
LELNASD+R I+VVR++IKA+ + E +++ L K+++LDE D M
Sbjct 66 NISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEV-LPSWKLVVLDEADMM 124
Query 153 TEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVC 212
TE AQ ALRRI+E++S+ TRF L CN + +P+ SRC+ RF + ++L +C
Sbjct 125 TEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYIC 184
Query 213 AKENVTFTDDGIEAIVFSADGDMRSALNNLQSTVSGFGLVNKENVEKVCDTPPPEMLRRI 272
EN+ DD +E I+ + +GD+R A++ LQ + +V V P ++ +I
Sbjct 185 QNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCINTKITLNSVLDVSGLPSDNIVYKI 244
Query 273 MQQCVAGDWYGAQSVARVILSLGYTPLDVVTTFRGVL---RRADSELQEHLLLEF 324
+ C D + + I+ G+ + +F + L+ +LLE
Sbjct 245 IDACKMKDLKLVEKTVQDIIEDGFDVAYIFKSFNNYFVTNTEYEDSLKYQILLEL 299
> cel:F31E3.3 rfc-4; RFC (DNA replication factor) family member
(rfc-4); K10755 replication factor C subunit 2/4
Length=334
Score = 177 bits (448), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 99/209 (47%), Positives = 134/209 (64%), Gaps = 11/209 (5%)
Query 44 WIEKYRPQALDEVVGNDEVLQRLRIIALEG-NMPHLLLAGPPGTGKTSSVLCLARALL-Q 101
W EKYRP+ LD++ DEV+ L+ AL+G ++PHLL GPPGTGKTS+ L R L +
Sbjct 17 WTEKYRPKTLDDIAYQDEVVTMLKG-ALQGRDLPHLLFYGPPGTGKTSAALAFCRQLFPK 75
Query 102 SRWRSCCLELNASDERSIDVVRDRIKAFAK------ERRDLPLGRHKIIILDEVDSMTEA 155
+ + L+LNASDER I VVR +I++F+K R D+ + KIIILDEVD+MT
Sbjct 76 NIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVL--KLKIIILDEVDAMTRE 133
Query 156 AQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCAKE 215
AQ A+RR++E S TTRF L CN S +I P+ SRCA RF L VQRLR +C E
Sbjct 134 AQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAE 193
Query 216 NVTFTDDGIEAIVFSADGDMRSALNNLQS 244
+DD ++ ++ ++GD+R A+ LQS
Sbjct 194 GTPMSDDELKQVMEYSEGDLRRAVCTLQS 222
> cpv:cgd3_3170 replication factor RFC3 AAA+ ATpase ; K10756 replication
factor C subunit 3/5
Length=383
Score = 169 bits (429), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 144/269 (53%), Gaps = 39/269 (14%)
Query 44 WIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARALLQSR 103
W+EKYRP L +++ + +++ + G +PHLL GPPGTGKTS++ +++ + + R
Sbjct 14 WVEKYRPSGLQDLLSHKDIINTIEKFISSGQLPHLLFHGPPGTGKTSTIHAISKCIYKDR 73
Query 104 WRSCCLELNASDERSIDVVRDRIKAFAK------------------------ERRDLPLG 139
LELNASD+R I+VVRD IK+F++ R+L
Sbjct 74 KYQMVLELNASDDRGINVVRDAIKSFSESASTTLNHSGGTNSNIEDIEMSDVSTRNLDCN 133
Query 140 RH-----KIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAIL 194
+ K+IILDE D MT AQ ALRRIME +S+ RF + CN + + LQSRC
Sbjct 134 KSLCENIKLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICNYVNKITPALQSRCTRF 193
Query 195 RFTKLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSALNNLQS-TVSGFGLVN 253
RF+ L + R+ E+ E + T +G E+++ S+ GDMR LN LQS ++S +G +
Sbjct 194 RFSPLPIEDIRNRISEIALSERIFITREGQESLIKSSRGDMRKVLNVLQSCSMSNYGNIE 253
Query 254 KE---------NVEKVCDTPPPEMLRRIM 273
K ++E + EM+ RI+
Sbjct 254 KHKDSGELNGASIEGLITYINEEMIHRIL 282
> hsa:5985 RFC5, MGC1155, RFC36; replication factor C (activator
1) 5, 36.5kDa; K10756 replication factor C subunit 3/5
Length=255
Score = 140 bits (353), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 135/245 (55%), Gaps = 8/245 (3%)
Query 109 LELNASDERSIDVVRDRIKAFAKERRDLPLGRHKIIILDEVDSMTEAAQQALRRIMELHS 168
LELNASD+R ID++R I +FA R G K++ILDE D+MT+ AQ ALRR++E +
Sbjct 3 LELNASDDRGIDIIRGPILSFASTRTIFKKG-FKLVILDEADAMTQDAQNALRRVIEKFT 61
Query 169 DTTRFALACNSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREVCAKENVTFTDDGIEAIV 228
+ TRF L CN S +I LQSRC RF L+ +V RL V +E V ++DG++A+V
Sbjct 62 ENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALV 121
Query 229 FSADGDMRSALNNLQSTVSGFGLVNKENVEKVCDTPPPEMLRRIMQQCVAGDWYGA-QSV 287
+ GDMR ALN LQST FG V +E V P + I+ + D+ A +++
Sbjct 122 TLSSGDMRRALNILQSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQDFTTAYRNI 181
Query 288 ARVILSLGYTPLDVVTTFRGVLRRAD--SELQEHLLLEFLGIVGMTHMTMAGGLSTELQM 345
+ G D++T + R D S ++ HLL + I ++ G + ++Q+
Sbjct 182 TELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKMADI----EYRLSVGTNEKIQL 237
Query 346 EKMLA 350
++A
Sbjct 238 SSLIA 242
> ath:AT5G27740 EMB2775 (EMBRYO DEFECTIVE 2775); DNA binding /
nucleoside-triphosphatase/ nucleotide binding; K10756 replication
factor C subunit 3/5
Length=354
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 126/233 (54%), Gaps = 31/233 (13%)
Query 43 IWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARAL--- 99
+W++KYRP++LD+V+ ++++ Q+L+ + E + PHLL GP G+GK + ++ L + +
Sbjct 2 LWVDKYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHLLFYGPSGSGKKTLIMALLKQIYGA 61
Query 100 ------LQSR-WR-----------------SCCLELNASDERSID--VVRDRIKAFAKER 133
+++R W+ + +EL SD D +V++ IK AK R
Sbjct 62 SAEKVKVENRAWKVDAGSRTIDLELTTLSSTNHVELTPSDAGFQDRYIVQEIIKEMAKNR 121
Query 134 RDLPLGR--HKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRC 191
G+ +K+++L+EVD ++ AQ +LRR ME +S + R L CNSSS V E ++SRC
Sbjct 122 PIDTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRC 181
Query 192 AILRFTKLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSALNNLQS 244
+R S +V+ L V KE++ I ++ +R A+ +L++
Sbjct 182 LNVRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLET 234
> xla:734626 rfc3, MGC115007; replication factor C (activator
1) 3, 38kDa; K10756 replication factor C subunit 3/5
Length=356
Score = 110 bits (275), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 114/234 (48%), Gaps = 44/234 (18%)
Query 42 SIWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARAL-- 99
S+W++KYRP +L ++ + + +LR + G+ PHLL+ GP G GK + ++CL R L
Sbjct 2 SLWVDKYRPSSLSKLDYHKDQASQLRNLVQCGDFPHLLVFGPSGAGKKTRIMCLLRELYG 61
Query 100 -------------------------LQSRWRSCCLELNASDERSID--VVRDRIKAFAKE 132
+ S + LE+N SD + D V+++ +K A+
Sbjct 62 AGVEKLRIEHQTITTPSKKKIEISTIASNYH---LEVNPSDAGNSDRVVIQELLKTVAQS 118
Query 133 R-------RDLPLGRHKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIE 185
+ RD K+++L EVD +T+ AQ ALRR ME + T R L CNS+S VI
Sbjct 119 QQLETSTQRDF-----KVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIA 173
Query 186 PLQSRCAILRFTKLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSAL 239
P++SRC +R S + L VC KE + D I + ++R AL
Sbjct 174 PIRSRCLAVRVPAPSTDEICTVLFSVCKKEGLVLPQDLARRIAEKSGRNLRKAL 227
> cel:C39E9.13 rfc-3; RFC (DNA replication factor) family member
(rfc-3); K10756 replication factor C subunit 3/5
Length=354
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 118/229 (51%), Gaps = 32/229 (13%)
Query 42 SIWIEKYRPQAL---DEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARA 98
++W++KYRP+ L D V + E L+ ++ + MPHLL GP G GK + + CL R
Sbjct 2 ALWVDKYRPKDLLGKDGVDYHIEQANHLKFLSADC-MPHLLFCGPSGAGKKTRIKCLLRE 60
Query 99 L------------------------LQSRWRSCCLELNASDERSID--VVRDRIKAFAKE 132
L +Q+ + +E+ SD D VV+D +K A+
Sbjct 61 LYGVGVEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDVGIYDRVVVQDLVKEMAQT 120
Query 133 RRDLPLGRH--KIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSR 190
+ + K+++L E DS+T AQ LRR ME +++ + L+C S S +IEPLQSR
Sbjct 121 SQIESTSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSR 180
Query 191 CAILRFTKLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSAL 239
C I+ +D + + LR+V +E+ ++ ++ IV ++G++R A+
Sbjct 181 CIIINVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAI 229
> hsa:5983 RFC3, MGC5276, RFC38; replication factor C (activator
1) 3, 38kDa; K10756 replication factor C subunit 3/5
Length=356
Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 112/234 (47%), Gaps = 44/234 (18%)
Query 42 SIWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARAL-- 99
S+W++KYRP +L + + E +LR + G+ PHLL+ GP G GK + ++C+ R L
Sbjct 2 SLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
Query 100 -------------------------LQSRWRSCCLELNASDERSID--VVRDRIKAFAKE 132
+ S + LE+N SD + D V+++ +K A+
Sbjct 62 VGVEKLRIEHQTITTPSKKKIEISTIASNYH---LEVNPSDAGNSDRVVIQEMLKTVAQS 118
Query 133 R-------RDLPLGRHKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIE 185
+ RD K+++L EVD +T+ AQ ALRR ME + T R L CNS+S VI
Sbjct 119 QQLETNSQRDF-----KVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIP 173
Query 186 PLQSRCAILRFTKLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSAL 239
P++SRC +R S + L VC KE + + + ++R AL
Sbjct 174 PIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKAL 227
> mmu:69263 Rfc3, 2810416I22Rik, 38kDa, AU022547, Recc3; replication
factor C (activator 1) 3; K10756 replication factor C
subunit 3/5
Length=356
Score = 105 bits (261), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 112/234 (47%), Gaps = 44/234 (18%)
Query 42 SIWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARAL-- 99
S+W++KYRP +L + + E +LR + G+ PHLL+ GP G GK + ++C+ R L
Sbjct 2 SLWVDKYRPSSLARLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYG 61
Query 100 -------------------------LQSRWRSCCLELNASDERSID--VVRDRIKAFAKE 132
+ S + LE+N SD + D V+++ +K A+
Sbjct 62 IGVEKLRIEHQTITTPSKKKIEISTIASNYH---LEVNPSDAGNSDRVVIQEMLKTVAQS 118
Query 133 R-------RDLPLGRHKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIE 185
+ RD K+++L EVD +T+ AQ ALRR ME + T R L CNS+S VI
Sbjct 119 QQLETSSQRDF-----KVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIP 173
Query 186 PLQSRCAILRFTKLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSAL 239
P++SRC +R S + L VC KE + + + ++R AL
Sbjct 174 PIRSRCLAVRVPAPSIEDICSVLSTVCRKEGLALPSTLARRLAEKSCRNLRKAL 227
> dre:259256 rfc3, cb275; replication factor C (activator 1) 3;
K10756 replication factor C subunit 3/5
Length=356
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 28/226 (12%)
Query 42 SIWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARAL-- 99
S+W++KYRP +L ++ + E +L+ + G+ PHLL+ GP G GK + ++CL R L
Sbjct 2 SLWVDKYRPTSLAKLDYHKEQANQLKNLVQCGDFPHLLVYGPSGAGKKTRIMCLLRELYG 61
Query 100 -----LQSRWRSCC-----------------LELNASDERSID--VVRDRIKAFAKERRD 135
L+ +S LE+N SD + D V+++ IK A+ ++
Sbjct 62 AGVEKLRIEHQSITTPSKKKLEINTIASNYHLEVNPSDAGNSDRVVIQELIKTVAQSQQI 121
Query 136 LPLG--RHKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCAI 193
K+++L EVD +T+ AQ ALRR ME + T R L CNS+S VI P++SRC
Sbjct 122 QSSAQREFKVVLLTEVDRLTKDAQHALRRTMEKYMATCRLILCCNSTSKVIAPIRSRCLA 181
Query 194 LRFTKLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSAL 239
+R S + L VC KE + + + I + ++R AL
Sbjct 182 VRVPLPSVEEVCSVLSGVCRKEGLLLPPELAKQIAEKSGRNLRKAL 227
> sce:YBR087W RFC5; Rfc5p; K10756 replication factor C subunit
3/5
Length=354
Score = 102 bits (255), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 127/238 (53%), Gaps = 35/238 (14%)
Query 42 SIWIEKYRPQALDEVVGNDEVLQRLRIIALEG-NMPHLLLAGPPGTGKTSSVLCL----- 95
S+W++KYRP++L+ + N+E+ L+ ++ + ++PHLLL GP GTGK + + L
Sbjct 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIF 61
Query 96 ----------ARALLQSRWRSC---------CLELNASDERSID--VVRDRIKAFAK--- 131
R + + R LE+ SD + D V+++ +K A+
Sbjct 62 GPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ 121
Query 132 ----ERRDLPLGRHKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPL 187
+ +D R+K +I++E +S+T+ AQ ALRR ME +S R + C+S S +I P+
Sbjct 122 VDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPI 181
Query 188 QSRCAILRFTKLSDAHLVQRLREVCAKENVTF-TDDGIEAIVFSADGDMRSALNNLQS 244
+SRC ++R SD+ + L +V E + T D ++ I +++G++R +L L+S
Sbjct 182 KSRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLES 239
> pfa:PF11_0117 replication factor C subunit 5, putative; K10756
replication factor C subunit 3/5
Length=349
Score = 97.8 bits (242), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 119/239 (49%), Gaps = 36/239 (15%)
Query 43 IWIEKYRPQALDEVVGNDEVLQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARALLQS 102
+W+EKY PQ++DE+ + ++ +RLR ++ ++PH++ G PG GK++ + CL + + +
Sbjct 1 MWLEKYSPQSIDELTIHKDITERLRKLSRHKDLPHIIFYGAPGGGKSTRINCLIKEIFKD 60
Query 103 RW---RSCCLELNASDERSIDVV---------------RDRI------------KAFAKE 132
R C+ NA ++ +I+VV +D+I K+ A
Sbjct 61 EKIIRRPECIT-NAENKININVVQSNYHLELQCFELGNKDKIIVQSIIKELCSYKSSASF 119
Query 133 RRDLPLGRHKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCA 192
P+ R I + + + ++E AQ LRR +E + R L S +IEPL+SRC
Sbjct 120 FSKTPMYR--IFVFKDAEFLSEGAQAGLRRTLETYIRNARVILHLEHLSKIIEPLKSRCI 177
Query 193 ILRFTKLSDAHLVQRLREVCAKENV--TF-TDDGIEAIVFSADGDMRSALNNLQSTVSG 248
+R S+ + L+ +C +ENV +F T + + ++ + ++R + L+ +V
Sbjct 178 CIRVPLPSEEEIYSVLQNICKQENVSPSFSTYEYFQTLINTHGRNLRKCIMALEMSVYA 236
> cpv:cgd8_610 DNA replication repC1, AAA+ ATpase with a BRCT
domain at the N-terminus ; K10754 replication factor C subunit
1
Length=874
Score = 94.0 bits (232), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 137/289 (47%), Gaps = 60/289 (20%)
Query 6 ASNSSSAMNGSSSSSSSSGSSSSSSGSSSSSSSGNESIWIEKYRPQALDEVVGNDEVLQR 65
A S + N S SG+ + ++S+ GN S+W ++++P++LD+V+GN EV+++
Sbjct 236 AKYDSQSPNRKSHGVFESGNKINEGNMNNSNFDGNSSLWTDRHKPESLDQVLGNGEVIKK 295
Query 66 LRI-------IALEGN--------------MPHL--------LLAGPPGTGKTSSVLCLA 96
L+ + +EG P + LL+GPPG GK++ +A
Sbjct 296 LQTWLSDWKSVVIEGKKKAPPKASFSPGSRFPQVENINARAALLSGPPGIGKSTVATLIA 355
Query 97 RALLQSRWRSCCLELNASDERSIDVVRD---------RIKAFAKER-------RDLPLGR 140
+ + +E+NASD+R+ +V+ + + FA++ + L
Sbjct 356 K-----KCGYIPIEMNASDDRTKEVIENLSESAVGGFSLSTFARKSSSSSQFGEEGGLNT 410
Query 141 HKIIILDEVDSM---TEAAQQALRRIMELHSDTTRFALAC---NSSSSVIEPLQSRCAIL 194
+ ++I+DE+D + AL R+++ TR+ + C + S + L +C L
Sbjct 411 NMLLIMDEMDGLGGSDRGGAAALGRLIQ----KTRWPIICICNDRMSEKVRNLAPKCYDL 466
Query 195 RFTKLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSALNNLQ 243
RF++ S +++R++E+ KE + + IE + S D+R LN LQ
Sbjct 467 RFSRPSKVQIIKRMQEIANKEGMKIEPNAIELLCESVGNDLRQILNELQ 515
> cpv:cgd2_3180 replication factor C subunit 5 ; K10756 replication
factor C subunit 3/5
Length=345
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/231 (27%), Positives = 108/231 (46%), Gaps = 39/231 (16%)
Query 43 IWIEKYRPQALDEVVGNDEVLQRLRIIALE--GNMPHLLLAGPPGTGKTSSVLCLARALL 100
+WI+KY+P+ L ++ N E+ L I GN+PHLL GP G GK + + +
Sbjct 2 LWIDKYQPRYLRDLKCNKELNSLLEKITSNSNGNIPHLLFYGPSGGGKKVRISSVLHEIF 61
Query 101 -----------------QSRWRSC----CLELNASDERSID--VVRDRIKAFAKERRDLP 137
S + C ++++A D + D V + IK + +
Sbjct 62 GDSVDKVKADMIKPEGTNSEFVLCQSPHHMQISAPDLGTKDGIVTQYLIKQLSSQ----- 116
Query 138 LG---------RHKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQ 188
+G +++ + E D ++ AQ LRR ME +S+ +R L C SS+I PL+
Sbjct 117 MGANSFFSKGPNYRVFTILEADVLSLKAQAGLRRTMEKYSNNSRLILHCEQLSSIIPPLR 176
Query 189 SRCAILRFTKLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSAL 239
SRC +R S ++Q LR + EN+ ++ +E IV ++ ++R A+
Sbjct 177 SRCLCIRVPLPSPEEVLQVLRFISNSENLQVPNNYLEQIVTESECNLRRAI 227
> pfa:PFB0895c replication factor C subunit 1, putative; K10754
replication factor C subunit 1
Length=904
Score = 80.9 bits (198), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 130/272 (47%), Gaps = 41/272 (15%)
Query 6 ASNSSSAMNGSSSSSSSSGSSSSSSGSSSSSSSGNE---SIWIEKYRPQALDEVVGNDEV 62
AS++ N + + + + + ++ NE +W+EKYRP+ L+E+VGN++
Sbjct 312 ASDTIKTENKDKNYNYEKKDKNYNYEKKDTHNTQNEILNQLWVEKYRPKNLNELVGNNQN 371
Query 63 LQRLRI-------IALEG----------------NMPHLLLAGPPGTGKTSSVLCLARAL 99
+ +L+ + ++G N LL+GP G GKT++ ++ A
Sbjct 372 VIKLQNWLASWEDVCIKGIKKPAQKTFRGIFENVNARCALLSGPAGIGKTTTAKIVSEA- 430
Query 100 LQSRWRSCCLELNASDERSIDVVRDRIKAFAKERRD-LPLGRHKI----IILDEVDSMTE 154
S + +E NASDER+ V ++I A + L K+ II+DEVD M+
Sbjct 431 --SGYN--VIEFNASDERNKAAV-EKISEMATGGYSIMSLNNRKLTKTCIIMDEVDGMSS 485
Query 155 AAQQALRRIMELHSDTTRFALAC---NSSSSVIEPLQSRCAILRFTKLSDAHLVQRLREV 211
+ I++L + T+ + C + ++ + L ++C L+F+ +V+RL E+
Sbjct 486 GDKGGSTAILKL-IEKTKCPIICICNDRQNNKMRTLANKCYDLKFSMPQKNSVVKRLLEI 544
Query 212 CAKENVTFTDDGIEAIVFSADGDMRSALNNLQ 243
C KE + + +E + S GD+R LN LQ
Sbjct 545 CKKEGIMMEPNALELLWESTCGDIRQMLNTLQ 576
> ath:AT1G14460 DNA polymerase-related
Length=1116
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 36/221 (16%)
Query 46 EKYRPQALDEVVGNDEVLQRLRIIALEGNMPHL-LLAGPPGTGKTSSVLCLARAL----L 100
+KY+P DE++G V+Q L +G + H+ L GP GTGKTS+ L+ AL +
Sbjct 426 QKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSAALNCDVV 485
Query 101 QSRWRSC----------------CLELNASDERSIDVVRDRIKAFAKERRDLPLG----- 139
+ C LEL+A + + VR +K L L
Sbjct 486 TEEMKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEKVRYLLKKL------LTLAPQSSQ 539
Query 140 RHKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSS--SVIEPLQSRCAILRFT 197
R+K+ ++DE + +L + +E + +F C ++ +V +QSRC F
Sbjct 540 RYKVFVIDECHLLPSRTWLSLLKFLE--NPLQKFVFVCITTDLDNVPRTIQSRCQKYIFN 597
Query 198 KLSDAHLVQRLREVCAKENVTFTDDGIEAIVFSADGDMRSA 238
K+ D +V RLR++ + EN+ ++ I +ADG +R A
Sbjct 598 KVRDGDIVVRLRKIASDENLDVESQALDLIALNADGSLRDA 638
> bbo:BBOV_IV003080 21.m02902; replication factor C 38 kDa subunit;
K10756 replication factor C subunit 3/5
Length=349
Score = 79.0 bits (193), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 117/259 (45%), Gaps = 42/259 (16%)
Query 43 IWIEKYRPQALDEVVGNDEV---LQRLRIIALEGNMPHLLLAGPPGTGKTSSVLCLARAL 99
+WI+K+ P+ LDE+ + +V L +L + G +PHLL GP G+GK + +L RA+
Sbjct 2 LWIDKHCPKRLDELTSHRDVNALLTKL-VEKSHGEIPHLLFYGPSGSGKKTRILATLRAV 60
Query 100 L-----------------QSRWRSC---------CLELNASDERSI-DVVRDRIKAFAKE 132
S C C +L + D + D++R + +
Sbjct 61 FGPSIDKVKTEIISNVDTSSEVVVCQSDHHIQIPCSDLGSRDRVIVQDIIRTLSASPSAS 120
Query 133 RRDLPLGRHKIIILDEVDSMTEAAQQALRRIMELHSDTTRFALACNSSSSVIEPLQSRCA 192
+ ++ + ++ D+++ AQ ALRR ME + R L N S ++ PL+SRC
Sbjct 121 NYFMKGPSFRVFLFEDADALSLPAQAALRRTMETYIKNARMILHVNQLSRIMLPLRSRCL 180
Query 193 ILRFTKLSDAHLVQRLREVCAKENVT---FTDDGIEAIVFSADGDMRSALNNLQSTVSG- 248
+R + + LR +C ENV +D+ + I S+ ++R A+ L++ G
Sbjct 181 CIRVGSHTIDEITTILRSICKIENVASAQSSDEVLRRIATSSGRNLRRAILTLETMTMGG 240
Query 249 -------FGLVNKENVEKV 260
F L + NV+++
Sbjct 241 YPGNTVDFLLPWERNVQQI 259
Lambda K H
0.316 0.129 0.362
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 15893029844
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40