bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_0320_orf1
Length=194
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_022860 eukaryotic translation initiation factor 3 s... 224 1e-58
pfa:PFE0885w eukaryotictranslation initiation factor 3 subunit... 156 4e-38
tpv:TP04_0268 hypothetical protein; K03253 translation initiat... 134 2e-31
cpv:cgd2_360 prtip-like IF39 eukaryotic translation initiation... 131 1e-30
bbo:BBOV_II003250 18.m06273; eukaryotic translation initiation... 120 2e-27
hsa:8662 EIF3B, EIF3-ETA, EIF3-P110, EIF3-P116, EIF3S9, MGC104... 85.9 8e-17
mmu:27979 Eif3b, AL033316, AL033334, AL033369, AW208965, D5Wsu... 85.5 9e-17
xla:735075 eif3b, MGC99017, eIF-3-eta; eukaryotic translation ... 85.5 1e-16
cel:Y54E2A.11 eif-3.B; Eukaryotic Initiation Factor family mem... 83.2 5e-16
dre:796380 eif3b, eif3s9, wu:fc17c01; eukaryotic translation i... 80.9 3e-15
ath:AT5G25780 EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTO... 71.6 1e-12
ath:AT5G27640 TIF3B1; TIF3B1 (TRANSLATION INITIATION FACTOR 3B... 70.9 3e-12
sce:YOR361C PRT1, CDC63, DNA26; Prt1p; K03253 translation init... 64.3 3e-10
ath:AT5G13480 FY; FY; protein binding 35.8 0.093
sce:YMR146C TIF34; Tif34p; K03246 translation initiation facto... 34.3 0.25
sce:YGR054W Eukaryotic initiation factor (eIF) 2A; associates ... 34.3 0.27
mmu:67337 Cstf1, 1700057K18Rik, AI788832; cleavage stimulation... 33.9 0.32
xla:447785 cstf1, MGC83790; cleavage stimulation factor, 3' pr... 33.9 0.37
bbo:BBOV_IV005340 23.m06217; WD domain, G-beta repeat containi... 33.1 0.64
xla:380171 cstf1, MGC53063; cleavage stimulation factor, 3' pr... 32.7 0.84
ath:AT1G04510 transducin family protein / WD-40 repeat family ... 32.7 0.89
cel:E04D5.1 hypothetical protein; K15026 translation initiatio... 32.3 1.1
dre:406291 katnb1, wu:fj32f02, wu:fj65h01, zgc:56071; katanin ... 31.6 1.6
cel:C18E3.5 hypothetical protein 31.2 2.2
hsa:1477 CSTF1, CstF-50, CstFp50; cleavage stimulation factor,... 30.8 2.8
xla:444261 apaf1, MGC80868, apaf-1; apoptotic peptidase activa... 30.8 3.3
ath:AT5G42010 WD-40 repeat family protein 30.4 3.5
tgo:TGME49_085660 DEAD/DEAH box helicase domain-containing pro... 30.0 4.9
mmu:11783 Apaf1, 6230400I06Rik, Apaf-1, Apaf1l, KIAA0413, fog,... 30.0 5.8
ath:AT5G05310 hypothetical protein 29.6 7.6
ath:AT1G73720 transducin family protein / WD-40 repeat family ... 29.3 9.3
> tgo:TGME49_022860 eukaryotic translation initiation factor 3
subunit 9, putative ; K03253 translation initiation factor
3 subunit B
Length=756
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 106/179 (59%), Positives = 134/179 (74%), Gaps = 7/179 (3%)
Query 4 RKSKTERRFGPNSRSQWSPQGSFLATFHRQGISLWAGRNFEKKARLEHKEVKQIMFSPKE 63
R+ +R + R QWSPQGSFLATFHR GI+LWAG FEKK R EHK+VKQI FSP E
Sbjct 219 RERADGKRVWTDFRVQWSPQGSFLATFHRPGIALWAGDQFEKKVRFEHKDVKQIDFSPNE 278
Query 64 TYMLSWDGTPASMRNEKAFKTWNVMTGEMLRQFATPAATPRGTEFPHFLFSHDEKYLAKI 123
TY+++WDG+PA +RNEKA + W VMTGE+LRQF TPA +PRG E+PHFLFSHD++Y+A++
Sbjct 279 TYVITWDGSPAQLRNEKAVRIWKVMTGELLRQFPTPAYSPRGGEYPHFLFSHDDRYVARM 338
Query 124 GDKELCIYAMDPKD------NFPDQAADEDVTPVKLLRDEK-GHFSALKYPVEKFEWSP 175
G+KELC+Y M+ D D+ +D V+LLRD + G S+LKYP+EKFEWSP
Sbjct 339 GEKELCVYQMECDDEPEAEGEKSDEKGRKDRCAVRLLRDPRDGKLSSLKYPLEKFEWSP 397
> pfa:PFE0885w eukaryotictranslation initiation factor 3 subunit,
putative; K03253 translation initiation factor 3 subunit
B
Length=716
Score = 156 bits (395), Expect = 4e-38, Method: Composition-based stats.
Identities = 80/176 (45%), Positives = 113/176 (64%), Gaps = 17/176 (9%)
Query 2 PKRKSKTERRFGPNSRSQWSPQGSFLATFHRQGISLWAGRNFEKKARLEHKEVKQIMFSP 61
P+ T ++ P S QWS QGS+L +FH GI+LW G +FEK RL+HK VK+IMFSP
Sbjct 199 PQLIYTTFKKNAPFSSVQWSNQGSYLVSFHNPGIALWGGDSFEKLIRLQHKSVKEIMFSP 258
Query 62 KETYMLSWDGTPASMRNEKAFKTWNVMTGEMLRQFATPAATPRGTEFPHFLFSHDEKYLA 121
E Y+L+WDGTP S+RNEK+ W V+TG++LR F TP +P+ FPHFL+S D+KY+A
Sbjct 259 NENYVLTWDGTPYSLRNEKSICIWRVITGKLLRSFITPEYSPKEKMFPHFLWSPDDKYIA 318
Query 122 KIG-DKELCIYAMDPKDNFPDQAADEDVTPVKLLRDEKGHFSALKYP-VEKFEWSP 175
IG KE+ +Y ++ + L+ D++ + LKY V++F+WSP
Sbjct 319 CIGKQKEVYVY---------------ELPSMLLIEDQEKKRTPLKYSGVKEFDWSP 359
> tpv:TP04_0268 hypothetical protein; K03253 translation initiation
factor 3 subunit B
Length=731
Score = 134 bits (337), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/191 (38%), Positives = 103/191 (53%), Gaps = 19/191 (9%)
Query 4 RKSKTERRFGPNSRSQWSPQGSFLATFHRQGISLWAGRNFEKKARLEHKEVKQIMFSPKE 63
R+ RR + + +WSP GS+LA + GI+L+ G NFE K R EHK VK I FSP E
Sbjct 211 RERAEGRRAWADQKVEWSPNGSYLAVYKWAGIALYGGNNFELKIRFEHKNVKNIQFSPCE 270
Query 64 TYMLSWDGTPASMRNEKAFKTWNVMTGEMLRQFATPAATPRGTEFPHFLFSHDEKYLAKI 123
Y+L+WDG R+E++ W V+TGE+LR F TP +P+G +FPH L++ KY+A +
Sbjct 271 EYLLTWDGLKGEDRHERSICIWRVITGELLRSFPTPLKSPKGGDFPHLLWNRTGKYIAML 330
Query 124 GD----KELCIYAMDPKDNFPDQAADEDVTPVKLLRDEKGHFSALKYPVEKFEWSPGRQH 179
E+ +Y + P+ + L+ G + LKY EKF+WSP
Sbjct 331 NQFSEGSEVMVYRL------PE---------MTLIEGPDGKPAPLKYAAEKFDWSPQDDI 375
Query 180 CFFVDKGVLTT 190
V G L T
Sbjct 376 LSVVIPGSLDT 386
> cpv:cgd2_360 prtip-like IF39 eukaryotic translation initiation
factor 3 ; K03253 translation initiation factor 3 subunit
B
Length=724
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 74/175 (42%), Positives = 102/175 (58%), Gaps = 18/175 (10%)
Query 5 KSKTERRFGPNSRSQWSPQGSFLATFHRQGISLWAGRNFEKKARLEHKEVKQIMFSPKET 64
++K +R + QWSP GS+L TFHRQG++LW G +++KK R EHK+VK I FSP E
Sbjct 215 RAKGGKRVWTDFSVQWSPMGSYLVTFHRQGVALWGGDDWDKKIRFEHKDVKFIDFSPNEE 274
Query 65 YMLSWDGTPASMRNEKAFKTWNVMTGEMLRQFATPAAT--PRGTEFP-HFLFSHDEKYLA 121
Y+L+WDG+ R +KA K W+V++G +LR F+TP T GT+ HFL+S YLA
Sbjct 275 YLLTWDGSSPDSRFDKAVKVWHVLSGRLLRCFSTPTMTLNNNGTDSGLHFLWSPTGNYLA 334
Query 122 KIGDK-ELCIYAMDPKDNFPDQAADEDVTPVKLLRDEKGHFSALKYPVEKFEWSP 175
DK EL +Y D A G+ + LKYP++ F+WSP
Sbjct 335 HCSDKGELFVYESSTMTLVEDPAT--------------GNKNPLKYPLQFFDWSP 375
> bbo:BBOV_II003250 18.m06273; eukaryotic translation initiation
factor 3 subunit; K03253 translation initiation factor 3
subunit B
Length=732
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 108/192 (56%), Gaps = 19/192 (9%)
Query 3 KRKSKTERRFGPNSRSQWSPQGSFLATFHRQGISLWAGRNFEKKARLEHKEVKQIMFSPK 62
+R+ +R + + +WS GS+L + R GI+L+ G +FE K R EH+ V+++ FSP
Sbjct 210 ERERAQGKRVWTDQKVEWSRNGSYLVFYRRPGIALYGGPDFELKVRFEHRNVQKVSFSPD 269
Query 63 ETYMLSWDGTPASMRNEKAFKTWNVMTGEMLRQFATPAATPRGTEFPHFLFSHDEKYLAK 122
E Y+L+WDGT S +++ + W+V+TGE L F++ + GT+ FL++H+ KY+A+
Sbjct 270 EEYLLTWDGTSDSDKSDNSVCIWHVITGEKLYSFSSREISTMGTDVLRFLWNHNGKYIAR 329
Query 123 IG----DKELCIYAMDPKDNFPDQAADEDVTPVKLLRDEKGHFSALKYPVEKFEWSPGRQ 178
+ E+ +Y + P+ ++L+RD +G + LKY E+F+WSP
Sbjct 330 LNPSTDGNEILVYQL------PE---------MELIRDAEGKPAPLKYAAERFDWSPTDD 374
Query 179 HCFFVDKGVLTT 190
+ G L T
Sbjct 375 ILSVLIPGTLDT 386
> hsa:8662 EIF3B, EIF3-ETA, EIF3-P110, EIF3-P116, EIF3S9, MGC104664,
MGC131875, PRT1; eukaryotic translation initiation factor
3, subunit B; K03253 translation initiation factor 3 subunit
B
Length=814
Score = 85.9 bits (211), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 25/178 (14%)
Query 6 SKTERRFGPNSRSQWSPQGSFLATFHRQGISLWAGRNFEKKARLEHKEVKQIMFSPKETY 65
S ER + +WSP+G++LATFH++GI+LW G F++ R H+ V+ I FSP E Y
Sbjct 328 SIEERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPCERY 387
Query 66 MLSWDGTPASMRNEKAFKTWNVMTGEMLRQFATPAATPRGTEFPHFLFSHDEKYLAKIGD 125
++++ + + +A W+++TG R F ++ +P F +SHD K+ A++
Sbjct 388 LVTFSPLMDTQDDPQAIIIWDILTGHKKRGFHCESS----AHWPIFKWSHDGKFFARMTL 443
Query 126 KELCIYAMDPKDNFPDQAADEDVTPVKLLRDEKGHFSALKYP-VEKFEWSPGRQHCFF 182
L IY TP L D+K +LK ++ F WSPG F
Sbjct 444 DTLSIYE----------------TPSMGLLDKK----SLKISGIKDFSWSPGGNIIAF 481
> mmu:27979 Eif3b, AL033316, AL033334, AL033369, AW208965, D5Wsu45e,
EIF3-ETA, EIF3-P110, EIF3-P116, Eif3s9, PRT1; eukaryotic
translation initiation factor 3, subunit B; K03253 translation
initiation factor 3 subunit B
Length=803
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 56/178 (31%), Positives = 89/178 (50%), Gaps = 25/178 (14%)
Query 6 SKTERRFGPNSRSQWSPQGSFLATFHRQGISLWAGRNFEKKARLEHKEVKQIMFSPKETY 65
S ER + +WSP+G++LATFH++GI+LW G F++ R H+ V+ I FSP E Y
Sbjct 317 SIEERARWTETYVRWSPKGTYLATFHQRGIALWGGDKFKQIQRFSHQGVQLIDFSPCERY 376
Query 66 MLSWDGTPASMRNEKAFKTWNVMTGEMLRQFATPAATPRGTEFPHFLFSHDEKYLAKIGD 125
++++ + + +A W+++TG R F ++ +P F +SHD K+ A++
Sbjct 377 LVTFSPLMDTQDDPQAIIIWDILTGHKKRGFHCESS----AHWPIFKWSHDGKFFARMTL 432
Query 126 KELCIYAMDPKDNFPDQAADEDVTPVKLLRDEKGHFSALKYP-VEKFEWSPGRQHCFF 182
L IY TP L D+K +LK ++ F WSPG F
Sbjct 433 DTLSIYE----------------TPSMGLLDKK----SLKISGIKDFSWSPGGNIIAF 470
> xla:735075 eif3b, MGC99017, eIF-3-eta; eukaryotic translation
initiation factor 3, subunit B; K03253 translation initiation
factor 3 subunit B
Length=688
Score = 85.5 bits (210), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 86/169 (50%), Gaps = 25/169 (14%)
Query 9 ERRFGPNSRSQWSPQGSFLATFHRQGISLWAGRNFEKKARLEHKEVKQIMFSPKETYMLS 68
ER + +WSP+G++LATFH++GI+LW G F++ R H+ V+ I FSP E Y+++
Sbjct 207 ERARWTETYVRWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPCERYLVT 266
Query 69 WDGTPASMRNEKAFKTWNVMTGEMLRQFATPAATPRGTEFPHFLFSHDEKYLAKIGDKEL 128
+ + +A W+++TG R F ++ +P F +SHD K+ A++ L
Sbjct 267 FSPLMDTKEEPQAIIIWDILTGHNKRGFHCESS----AHWPIFKWSHDGKFFARMTLDTL 322
Query 129 CIYAMDPKDNFPDQAADEDVTPVKLLRDEKGHFSALKYP-VEKFEWSPG 176
IY TP L D+K +LK ++ F WSPG
Sbjct 323 SIYE----------------TPSMGLLDKK----SLKITGIKDFSWSPG 351
> cel:Y54E2A.11 eif-3.B; Eukaryotic Initiation Factor family member
(eif-3.B); K03253 translation initiation factor 3 subunit
B
Length=725
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 89/179 (49%), Gaps = 21/179 (11%)
Query 7 KTERRFGPNSRSQWSPQGSFLATFHRQGISLWAGRNFEKKARLEHKEVKQIMFSPKETYM 66
K ER + WSP GS+L+T H+QGI LW G+++ + R H V+ I FSP ETY+
Sbjct 199 KAERANWTETVFTWSPHGSYLSTIHKQGIILWGGKDYARAHRFAHTNVQYIDFSPWETYL 258
Query 67 LSWDGTPASMR----NEKAFKTWNVMTGEMLRQFATPAATPRGT--EFPHFLFSHDEKYL 120
+++ S + + + W+V TGE+ + F+T T R +P F +S DEKY
Sbjct 259 VTYAAPEESNSWGDCEKDSLRIWDVRTGELKKAFSTFELTGRTQLPTWPFFRWSFDEKYF 318
Query 121 AKIGDKELCIYAMDPKDNFPDQAADEDVTPVKLLRDEKGHFSALK----YPVEKFEWSP 175
A C+ A + KD ++ + + + EK + +++FEWSP
Sbjct 319 A-------CLKAPE-KDKL---EREQKINGISIFESEKFELYEGRPVNIENIKQFEWSP 366
> dre:796380 eif3b, eif3s9, wu:fc17c01; eukaryotic translation
initiation factor 3, subunit B; K03253 translation initiation
factor 3 subunit B
Length=681
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/165 (31%), Positives = 85/165 (51%), Gaps = 25/165 (15%)
Query 19 QWSPQGSFLATFHRQGISLWAGRNFEKKARLEHKEVKQIMFSPKETYMLSWDGTPASMRN 78
+WSP+G++LATFH++GI+LW G F++ R H+ V+ I FSP E Y++++ + +
Sbjct 209 RWSPKGTYLATFHQRGIALWGGEKFKQIQRFSHQGVQLIDFSPCERYVVTFSPLMDTKDD 268
Query 79 EKAFKTWNVMTGEMLRQFATPAATPRGTEFPHFLFSHDEKYLAKIGDKELCIYAMDPKDN 138
+A W+V+TG+ R F ++ +P F +S D K+ A++ L IY
Sbjct 269 PQAIIIWDVLTGQKKRGFHCESS----AHWPIFKWSPDGKFFARMTQDMLSIYE------ 318
Query 139 FPDQAADEDVTPVKLLRDEKGHFSALKYP-VEKFEWSPGRQHCFF 182
TP L ++K +LK ++ F WSPG F
Sbjct 319 ----------TPSMGLLEKK----SLKINGIKDFSWSPGDNIIAF 349
> ath:AT5G25780 EIF3B-2 (EUKARYOTIC TRANSLATION INITIATION FACTOR
3B-2); nucleic acid binding / protein binding / translation
initiation factor; K03253 translation initiation factor
3 subunit B
Length=714
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query 10 RRFGPNSRSQWSPQGSFLATFHRQGISLWAGRN-FEKKARLEHKEVKQIMFSPKETYMLS 68
R + S QWSP G++L T H+QG ++W G + F + R +H VK + FSP E Y+++
Sbjct 208 RSYWTESYVQWSPIGTYLVTLHKQGAAVWGGADTFTRLMRYQHSMVKLVDFSPGEKYLVT 267
Query 69 WDGT-PASMRNEK--AFKTWNVMTGEMLRQFATPA--------ATPRGTEFPHFLFS--H 115
+ P++ R+ K ++V TG M+R F A G +P F ++
Sbjct 268 YHSQEPSNPRDASKVEIKVFDVRTGRMMRDFKGSADEFSIGGPGGVAGASWPVFRWAGGK 327
Query 116 DEKYLAKIGDKELCIY 131
D+KY AK+ + +Y
Sbjct 328 DDKYFAKLSKNTISVY 343
> ath:AT5G27640 TIF3B1; TIF3B1 (TRANSLATION INITIATION FACTOR
3B1); nucleic acid binding / translation initiation factor
Length=738
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query 10 RRFGPNSRSQWSPQGSFLATFHRQGISLWAGRN-FEKKARLEHKEVKQIMFSPKETYMLS 68
R + S QWSP G++L T H+QG ++W G + F + R +H VK + FSP E Y+++
Sbjct 233 RPYWTESYVQWSPLGTYLVTLHKQGAAVWGGADTFTRLMRYQHSMVKLVDFSPGEKYLVT 292
Query 69 WDGT-PASMRNEK--AFKTWNVMTGEMLRQFATPA--------ATPRGTEFPHFLFS--H 115
+ P++ R+ K ++V TG M+R F A G +P F ++
Sbjct 293 YHSQEPSNPRDASKVEIKVFDVRTGRMMRDFKGSADEFSIGGPGGVAGASWPVFRWAGGK 352
Query 116 DEKYLAKIGDKELCIY 131
D+KY AK+ + +Y
Sbjct 353 DDKYFAKLSKNTISVY 368
> sce:YOR361C PRT1, CDC63, DNA26; Prt1p; K03253 translation initiation
factor 3 subunit B
Length=763
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 23/143 (16%)
Query 16 SRSQWS-------PQGSFLATFHRQGISLWAGRNFEKKARLEHKEVKQIMFSPKETYMLS 68
SR WS P+G++L ++H+QG++ W G NF++ R H +V+ SP E Y+++
Sbjct 227 SRENWSTNYVRFSPKGTYLFSYHQQGVTAWGGPNFDRLRRFYHPDVRNSSVSPNEKYLVT 286
Query 69 WDGTPASMRNEKAFK------------TWNVMTGEMLRQFATPAATPRGTEFPHFLFSHD 116
+ P + + F W++ +G ++ F P ++P +S++
Sbjct 287 FSTEPIIVEEDNEFSPFTKKNEGHQLCIWDIASGLLMATF--PVIKSPYLKWPLVRWSYN 344
Query 117 EKYLAKIGDKELCIYAMDPKDNF 139
+KY A++ L ++ D NF
Sbjct 345 DKYCARMVGDSLIVH--DATKNF 365
> ath:AT5G13480 FY; FY; protein binding
Length=647
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query 16 SRSQWSPQGSFLATFHRQG-ISLWAGR--NFEKKARLEHKEVKQIMFSPKETYMLSWD-- 70
+R W+P G L T + G +LW G+ NFE + + ++ +++S E YM+S D
Sbjct 127 NRVLWTPSGRRLITGSQSGEFTLWNGQSFNFEMILQAHDQPIRSMVWSHNENYMVSGDDG 186
Query 71 GT----PASMRNEKAFKT 84
GT +M N KA KT
Sbjct 187 GTLKYWQNNMNNVKANKT 204
> sce:YMR146C TIF34; Tif34p; K03246 translation initiation factor
3 subunit I
Length=347
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 13/118 (11%)
Query 2 PKRKSKTERRFGPNSRSQWSPQGSFLATFHRQG-ISLW-AGRNFE--KKARLEHKEVKQI 57
P K T + + WS +G ++ H+ G IS + N+E L K + +
Sbjct 143 PIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM 202
Query 58 MFSPKETYMLSWDGTPASMRNEKAFKTWNVMTGEMLRQFAT--PAATPRGTEFPHFLF 113
FSP TY ++ S R+ +F +V T ++L+++ T P T T F+
Sbjct 203 QFSPDLTYFIT------SSRDTNSFLV-DVSTLQVLKKYETDCPLNTAVITPLKEFII 253
> sce:YGR054W Eukaryotic initiation factor (eIF) 2A; associates
specifically with both 40S subunits and 80 S ribosomes, and
interacts genetically with both eIF5b and eIF4E; homologous
to mammalian eIF2A; K15026 translation initiation factor 2A
Length=642
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query 5 KSKTERRFGPNSRSQWSPQGSFLATFHRQGISLWAGRNFEKKA-RLEHKEVKQIMFSPKE 63
+S T + P S SP G FLA ++ + ++ G + ++ +V + FSP
Sbjct 24 QSNTNSKDFPVISSVLSPCGRFLALSTKENVKVFTGPCLDNVLLTMKLSDVYDLHFSPAG 83
Query 64 TYMLSWDGTPASMRNEKAFKTW 85
Y+ +W+ N K K W
Sbjct 84 NYLSTWERASIQDPNHKNVKVW 105
> mmu:67337 Cstf1, 1700057K18Rik, AI788832; cleavage stimulation
factor, 3' pre-RNA, subunit 1; K14406 cleavage stimulation
factor subunit 1
Length=431
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 16/109 (14%)
Query 19 QWSPQGSFLATFHRQG-ISLWAG------RNFEKKARLEHKEVKQIMFSPKETYMLSWDG 71
++P + T + G I LW G FEK + EV +FS Y+LS
Sbjct 269 NYNPSANMYVTGSKDGCIKLWDGVSNRCITTFEKAH--DGAEVCSAIFSKNSKYILSSG- 325
Query 72 TPASMRNEKAFKTWNVMTGEMLRQFATPAATPRGTEFPHFLFSHDEKYL 120
+ K W + TG L ++ + R +F+H E Y+
Sbjct 326 ------KDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYI 368
> xla:447785 cstf1, MGC83790; cleavage stimulation factor, 3'
pre-RNA, subunit 1, 50kDa; K14406 cleavage stimulation factor
subunit 1
Length=431
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 16/108 (14%)
Query 20 WSPQGSFLATFHRQG-ISLWAG------RNFEKKARLEHKEVKQIMFSPKETYMLSWDGT 72
++P + T + G I LW G +EK + EV +FS Y+LS
Sbjct 270 YNPTANTYVTCSKDGSIKLWDGVSNRCVTTYEKAH--DGAEVCSAIFSKNSKYILSSG-- 325
Query 73 PASMRNEKAFKTWNVMTGEMLRQFATPAATPRGTEFPHFLFSHDEKYL 120
+ + W + TG ML ++ + R +F+H E Y+
Sbjct 326 -----KDSVARLWEISTGRMLVKYTGAGLSGRQVHRTQAVFNHTEDYV 368
> bbo:BBOV_IV005340 23.m06217; WD domain, G-beta repeat containing
protein; K13111 WD40 repeat-containing protein SMU1
Length=533
Score = 33.1 bits (74), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query 29 TFHRQGISLWAGRNFEKKARL----EHKEVKQI--MFSPKETYMLSWDGTPASMRNEKAF 82
TF R +SL G +F+K A++ + +K+ S + S+DG + +
Sbjct 325 TFSRNSMSLLTG-SFDKTAKIHGLKSGRSIKEFKGHHSIVNAAIYSYDGNKVITGSSDGY 383
Query 83 -KTWNVMTGEMLRQFATPAATPRGTEFPH 110
K W+ TG++L+ F GT+ P+
Sbjct 384 IKVWDSRTGDLLKSFLAYTGPGSGTQIPN 412
> xla:380171 cstf1, MGC53063; cleavage stimulation factor, 3'
pre-RNA, subunit 1, 50kDa; K14406 cleavage stimulation factor
subunit 1
Length=431
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 16/108 (14%)
Query 20 WSPQGSFLATFHRQG-ISLWAG------RNFEKKARLEHKEVKQIMFSPKETYMLSWDGT 72
++P + T + G I LW G +EK + EV +FS Y+LS
Sbjct 270 YNPTANTYVTCSKDGSIKLWDGVSNRCITTYEKAH--DGAEVCSAIFSKNSKYILSSG-- 325
Query 73 PASMRNEKAFKTWNVMTGEMLRQFATPAATPRGTEFPHFLFSHDEKYL 120
+ + W + TG M+ ++ + R +F+H E Y+
Sbjct 326 -----KDSVGRLWEISTGRMMVKYTGAGLSGRQVHRTQAVFNHTEDYV 368
> ath:AT1G04510 transducin family protein / WD-40 repeat family
protein; K10599 pre-mRNA-processing factor 19 [EC:6.3.2.19]
Length=523
Score = 32.7 bits (73), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 13/136 (9%)
Query 13 GPNSRSQWSPQGSFLATFHRQGISLWAGRNFEKKARLEHKEVKQIMFSPKETYMLSWDGT 72
G + +S G FLAT G+ LW R + + + + F +Y+ G
Sbjct 397 GEITSISFSENGYFLATAALDGVRLWDLRKLKNFRTFDFPDANSVEFDHSGSYL----GI 452
Query 73 PASMRNEKAFKTWNVMTG-EMLRQFATPAATPRGTEFPHFLFSHDEKYLAKIG--DKELC 129
AS + + F+ +V ++ + T + T F D KY+A +G D+ L
Sbjct 453 AAS--DIRVFQAASVKAEWNPIKTLPDLSGTGKSTSVK---FGLDSKYIA-VGSMDRNLR 506
Query 130 IYAMDPKDNFPDQAAD 145
I+ + DN D A D
Sbjct 507 IFGLPDDDNTEDSAQD 522
> cel:E04D5.1 hypothetical protein; K15026 translation initiation
factor 2A
Length=570
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/156 (19%), Positives = 66/156 (42%), Gaps = 13/156 (8%)
Query 5 KSKTERRFGPNSRSQWSPQGSFLATFHRQGISLWAGRNFEKKARLEHKEVKQIMFSPKET 64
++KT R N + +S G A Q ++ ++ +E K ++I+FSPK+
Sbjct 31 QNKTSRDVACNVFA-YSNNGQLFAYCDNQVTRVFEIATNKEILCVELKRTRKILFSPKDN 89
Query 65 YMLSWD-------GTPASMRNEKAFKTWNVMTGEMLRQFATPAATPRGTEFPHFLFSHDE 117
++L+++ T + + E + +++ G+ + F+ P + FS DE
Sbjct 90 FLLTFEPWAVYGPKTAENQKPEPNVRVYSLADGKHVSTFSAPKEASWEPQ-----FSDDE 144
Query 118 KYLAKIGDKELCIYAMDPKDNFPDQAADEDVTPVKL 153
A++ E+ Y D + + ++ T L
Sbjct 145 SLAARMVGSEVFFYTNMSFDRYDHKLVEKGATNFAL 180
> dre:406291 katnb1, wu:fj32f02, wu:fj65h01, zgc:56071; katanin
p80 (WD repeat containing) subunit B 1
Length=694
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 25/176 (14%)
Query 16 SRSQWSPQGSFLATFH-RQGISLWAGRN----FEKKARLEHKEVKQIMFSPKETYMLSWD 70
S + P G +LA+ I LW R F K + V+ + FSP ++
Sbjct 109 SSLDFHPMGEYLASGSVDSNIKLWDVRRKGCVFRYKGHTQ--AVRCLAFSPDGKWL---- 162
Query 71 GTPASMRNEKAFKTWNVMTGEMLRQFATPAATPRGTEFPHFLFSHDEKYLAKIGDKELCI 130
AS ++ K W+++ G+M+ +F + + +F H +YL G + +
Sbjct 163 ---ASASDDSTVKLWDLIAGKMITEFTSHTSAVNVVQF------HPNEYLLASGSADRTV 213
Query 131 YAMD-PKDNFPDQAADEDVTPVKLLRDEKGH--FSALKYPVEKFEWSPGRQHCFFV 183
D K N + E +L + G +S + + + W P R CF V
Sbjct 214 KLWDLEKFNMIGSSEGETGVVRSVLFNPDGSCLYSGSENTLRVYGWEPDR--CFDV 267
> cel:C18E3.5 hypothetical protein
Length=331
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 33/164 (20%)
Query 18 SQWSPQGSFLATF-HRQGISLW-AGRNFEKKARLE-HK-EVKQIMFSPKETYMLSWDGTP 73
SQ+S GSFLA+ + Q I LW E A L+ HK + ++ F+ ++++S GT
Sbjct 42 SQFSSDGSFLASAGYDQQIFLWNVFGECENFAVLKGHKGAIMEVKFNADSSHLVS-AGT- 99
Query 74 ASMRNEKAFKTWNVMTGEMLRQFAT------------------PAATPRGTEFPHFLFSH 115
+K + W++ TG +R F + +A+ GT H + S
Sbjct 100 -----DKTVRVWDMETGSCIRNFKSHTDIVNSVDVNRRGPQMICSASDDGTVMVHDMRSK 154
Query 116 D--EKYLAKIGDKELCIYAMDPKDNFPDQAADEDVTPVKLLRDE 157
+ +K++ K ++ + D DN D + +LR++
Sbjct 155 EAAKKFICKY--QQTAVTFNDAADNVICGGIDNQIKVWDMLRND 196
> hsa:1477 CSTF1, CstF-50, CstFp50; cleavage stimulation factor,
3' pre-RNA, subunit 1, 50kDa; K14406 cleavage stimulation
factor subunit 1
Length=431
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 41/109 (37%), Gaps = 16/109 (14%)
Query 19 QWSPQGSFLATFHRQG-ISLWAG------RNFEKKARLEHKEVKQIMFSPKETYMLSWDG 71
++ + T + G I LW G FEK + EV +FS Y+LS
Sbjct 269 NYNSSANMYVTGSKDGCIKLWDGVSNRCITTFEKAH--DGAEVCSAIFSKNSKYILSSG- 325
Query 72 TPASMRNEKAFKTWNVMTGEMLRQFATPAATPRGTEFPHFLFSHDEKYL 120
+ K W + TG L ++ + R +F+H E Y+
Sbjct 326 ------KDSVAKLWEISTGRTLVRYTGAGLSGRQVHRTQAVFNHTEDYV 368
> xla:444261 apaf1, MGC80868, apaf-1; apoptotic peptidase activating
factor 1; K02084 apoptotic protease-activating factor
Length=1248
Score = 30.8 bits (68), Expect = 3.3, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 8/81 (9%)
Query 19 QWSPQGS-FLATFHRQGISLWAGRNFEKKARLEHKEVKQIMFSPKETYMLSWDGTPASMR 77
++SP+ S FL + Q + LW N K + K + F+ +ET +L +
Sbjct 885 KFSPKSSSFLTSSDDQTVKLWETSNVSKPSATNLKREFDVSFNGEETLVL-------ATS 937
Query 78 NEKAFKTWNVMTGEMLRQFAT 98
+ N MTGE L Q T
Sbjct 938 KDDCILLINGMTGETLSQINT 958
> ath:AT5G42010 WD-40 repeat family protein
Length=709
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 14/95 (14%)
Query 94 RQFATPAATPRGTEFPH-------FLFSHDEKYLAKIGDKELCIYAM-----DPKDNFPD 141
+QF ++ G EF FSHD KYLA G E C+ + D + +
Sbjct 239 KQFKELSSLCVGQEFSAHDGSIVVMKFSHDGKYLASAG--EDCVVRVWNIIEDERRDNEF 296
Query 142 QAADEDVTPVKLLRDEKGHFSALKYPVEKFEWSPG 176
+ A+ D + V ++K LK EK E S G
Sbjct 297 EVAESDSSCVYFGMNDKSQIEPLKTENEKIEKSRG 331
> tgo:TGME49_085660 DEAD/DEAH box helicase domain-containing protein
; K12599 antiviral helicase SKI2 [EC:3.6.4.-]
Length=1329
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 45/111 (40%), Gaps = 20/111 (18%)
Query 57 IMFSPKETYMLSWDGTPASMRNEKAFKTWNVMTGEMLRQFATPAATPRGTEFPHFLFSHD 116
I+ PK+ M+ T + N + F W + R+ T + R T HFLF HD
Sbjct 588 IILLPKQVNMVLLSAT---LPNYRQFAEW--IGSVKQREVFTLSTDRRPTPLRHFLFFHD 642
Query 117 EKYLAKIGDKELCIYAMDPKDNFPDQAADEDVTPVKLLRDEKGHFSALKYP 167
+ +L MD K F A +E V+ EKG+ A + P
Sbjct 643 KAFL-----------LMDAKGRFQAGAYNEAFKHVR----EKGNPQAARKP 678
> mmu:11783 Apaf1, 6230400I06Rik, Apaf-1, Apaf1l, KIAA0413, fog,
mKIAA0413; apoptotic peptidase activating factor 1; K02084
apoptotic protease-activating factor
Length=1249
Score = 30.0 bits (66), Expect = 5.8, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 15/86 (17%)
Query 51 HKEVKQIMFSPKETYMLSW--DGTPASMRNEKAFKTWNVMTGEMLRQFATPAATPRGTEF 108
H+E + +++ +LSW DGT K WNV+TG + R F +GT
Sbjct 1043 HQETVKDFRLLQDSRLLSWSFDGT---------VKVWNVITGRIERDF----TCHQGTVL 1089
Query 109 PHFLFSHDEKYLAKIGDKELCIYAMD 134
+ S K+ + DK I++ D
Sbjct 1090 SCAISSDATKFSSTSADKTAKIWSFD 1115
> ath:AT5G05310 hypothetical protein
Length=496
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query 74 ASMRNEKAFKTW----NVMTGEMLRQFATPAATPRGTEFPHFLFSHDEKYLAKI 123
++ N A W V E LR+ T T G E + S DEKY AK+
Sbjct 377 VALGNLVAIAIWPTWVTVAVSETLRKVTTYVVTRPGRELLFTVVSQDEKYKAKV 430
> ath:AT1G73720 transducin family protein / WD-40 repeat family
protein; K13111 WD40 repeat-containing protein SMU1
Length=511
Score = 29.3 bits (64), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query 11 RFGPNSRSQ---WSPQGSFLATFHRQG-ISLWAGRNFEKKARLEHKEVKQIMFSPKETYM 66
+FG S ++ +SP G FLA+ G I +W + + K L+++ + M
Sbjct 209 KFGKKSHAECARFSPDGQFLASSSVDGFIEVWDYISGKLKKDLQYQADESFMMHDDPVLC 268
Query 67 LSWDGTP---ASMRNEKAFKTWNVMTGEMLRQF 96
+ + AS + K W + TG +R+F
Sbjct 269 IDFSRDSEMLASGSQDGKIKIWRIRTGVCIRRF 301
Lambda K H
0.319 0.134 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 5608917492
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40