bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_0347_orf3
Length=55
Score E
Sequences producing significant alignments: (Bits) Value
mmu:17709 COX2; cytochrome c oxidase subunit II (EC:1.9.3.1); ... 100 8e-22
xla:2642081 COX2; cytochrome c oxidase subunit II; K02261 cyto... 87.8 7e-18
dre:140540 COX2, mtco2; cytochrome c oxidase subunit II; K0226... 80.9 1e-15
hsa:4513 COX2, COII, MTCO2; cytochrome c oxidase subunit II; K... 79.7 2e-15
ath:ArthMp015 cox2; cytochrome c oxidase subunit 2; K02261 cyt... 63.2 2e-10
cel:COX2 cytochrome c oxidase subunit II; K02261 cytochrome c ... 62.4 3e-10
sce:Q0250 COX2, OXI1, OXII; Cox2p (EC:1.9.3.1); K02261 cytochr... 53.1 2e-07
tpv:TP01_0683 cytochrome c oxidase subunit II precursor; K0226... 48.1 7e-06
tgo:TGME49_110470 cytochrome c oxidase subunit II, putative (E... 45.4 5e-05
bbo:BBOV_IV010440 23.m05821; cytochrome c oxidase subunit 2 (E... 45.1 5e-05
pfa:PF14_0288 cytochrome c oxidase subunit II precursor, putat... 43.5 2e-04
> mmu:17709 COX2; cytochrome c oxidase subunit II (EC:1.9.3.1);
K02261 cytochrome c oxidase subunit II [EC:1.9.3.1]
Length=227
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 47/55 (85%), Positives = 53/55 (96%), Gaps = 0/55 (0%)
Query 1 SYEYTDYEDLSFDSYIIPTSELKPGELRLLEVDNRVVLPIEITIRMLVSSEDVLH 55
SYEYTDYEDL FDSY+IPT++LKPGELRLLEVDNRVVLP+E+ IRML+SSEDVLH
Sbjct 107 SYEYTDYEDLCFDSYMIPTNDLKPGELRLLEVDNRVVLPMELPIRMLISSEDVLH 161
> xla:2642081 COX2; cytochrome c oxidase subunit II; K02261 cytochrome
c oxidase subunit II [EC:1.9.3.1]
Length=229
Score = 87.8 bits (216), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 50/55 (90%), Gaps = 0/55 (0%)
Query 1 SYEYTDYEDLSFDSYIIPTSELKPGELRLLEVDNRVVLPIEITIRMLVSSEDVLH 55
SYEYT+YEDLSFDSY+IPT++L PG+ RLLEVDNR+V+P+E R+LV++EDVLH
Sbjct 107 SYEYTNYEDLSFDSYMIPTNDLTPGQFRLLEVDNRMVVPMESPTRLLVTAEDVLH 161
> dre:140540 COX2, mtco2; cytochrome c oxidase subunit II; K02261
cytochrome c oxidase subunit II [EC:1.9.3.1]
Length=230
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 46/55 (83%), Gaps = 0/55 (0%)
Query 1 SYEYTDYEDLSFDSYIIPTSELKPGELRLLEVDNRVVLPIEITIRMLVSSEDVLH 55
SYEYTDYE+L FDSY++PT +L PG RLLE D+R+V+P E IR+LVS+EDVLH
Sbjct 107 SYEYTDYENLEFDSYMVPTQDLTPGGFRLLETDHRMVVPKESPIRILVSAEDVLH 161
> hsa:4513 COX2, COII, MTCO2; cytochrome c oxidase subunit II;
K02261 cytochrome c oxidase subunit II [EC:1.9.3.1]
Length=227
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 47/55 (85%), Gaps = 0/55 (0%)
Query 1 SYEYTDYEDLSFDSYIIPTSELKPGELRLLEVDNRVVLPIEITIRMLVSSEDVLH 55
+YEYTDY L F+SY++P L+PG+LRLL+VDNRVVLPIE IRM+++S+DVLH
Sbjct 107 TYEYTDYGGLIFNSYMLPPLFLEPGDLRLLDVDNRVVLPIEAPIRMMITSQDVLH 161
> ath:ArthMp015 cox2; cytochrome c oxidase subunit 2; K02261 cytochrome
c oxidase subunit II [EC:1.9.3.1]
Length=260
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 45/60 (75%), Gaps = 5/60 (8%)
Query 1 SYEYTDY-----EDLSFDSYIIPTSELKPGELRLLEVDNRVVLPIEITIRMLVSSEDVLH 55
+YEY+DY + L+FDSY+IP +L+ G+ RLLEVDNRVV+P + +R++V+S DV H
Sbjct 128 TYEYSDYNSSDEQSLTFDSYMIPEEDLELGQSRLLEVDNRVVVPAKTHLRIIVTSADVPH 187
> cel:COX2 cytochrome c oxidase subunit II; K02261 cytochrome
c oxidase subunit II [EC:1.9.3.1]
Length=231
Score = 62.4 bits (150), Expect = 3e-10, Method: Composition-based stats.
Identities = 29/55 (52%), Positives = 37/55 (67%), Gaps = 0/55 (0%)
Query 1 SYEYTDYEDLSFDSYIIPTSELKPGELRLLEVDNRVVLPIEITIRMLVSSEDVLH 55
SYEY+D L FDSY+ +L GE RLLEVDNR V+P + IR ++S DV+H
Sbjct 110 SYEYSDIPGLEFDSYMKSLDQLSLGEPRLLEVDNRCVIPCDTNIRFCITSADVIH 164
> sce:Q0250 COX2, OXI1, OXII; Cox2p (EC:1.9.3.1); K02261 cytochrome
c oxidase subunit II [EC:1.9.3.1]
Length=251
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 41/60 (68%), Gaps = 5/60 (8%)
Query 1 SYEYTDY-----EDLSFDSYIIPTSELKPGELRLLEVDNRVVLPIEITIRMLVSSEDVLH 55
YEY+D+ E + F+SY+IP L+ G+LRLL+ D +V+P++ IR +V++ DV+H
Sbjct 127 KYEYSDFINDSGETVEFESYVIPDELLEEGQLRLLDTDTSMVVPVDTHIRFVVTAADVIH 186
> tpv:TP01_0683 cytochrome c oxidase subunit II precursor; K02261
cytochrome c oxidase subunit II [EC:1.9.3.1]
Length=176
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 30/45 (66%), Gaps = 0/45 (0%)
Query 11 SFDSYIIPTSELKPGELRLLEVDNRVVLPIEITIRMLVSSEDVLH 55
SF S ++ +L+PG LR LEVD R+ LP IR LV++ DVLH
Sbjct 64 SFQSNLVTDEDLQPGMLRQLEVDKRLTLPTRTHIRFLVTATDVLH 108
> tgo:TGME49_110470 cytochrome c oxidase subunit II, putative
(EC:1.9.3.1); K02261 cytochrome c oxidase subunit II [EC:1.9.3.1]
Length=191
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 0/44 (0%)
Query 12 FDSYIIPTSELKPGELRLLEVDNRVVLPIEITIRMLVSSEDVLH 55
F S ++ +L PG LR LEVD R+ LP IR L+++ DV+H
Sbjct 80 FQSNMVTDEDLLPGMLRNLEVDKRLTLPTRTHIRFLITATDVIH 123
> bbo:BBOV_IV010440 23.m05821; cytochrome c oxidase subunit 2
(EC:1.9.3.1); K02261 cytochrome c oxidase subunit II [EC:1.9.3.1]
Length=168
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 0/45 (0%)
Query 11 SFDSYIIPTSELKPGELRLLEVDNRVVLPIEITIRMLVSSEDVLH 55
SF S ++ +L PG LR LEVD R+ LP IR L+++ DV+H
Sbjct 55 SFQSNLVTDEDLVPGMLRQLEVDKRLTLPTRTHIRFLITATDVIH 99
> pfa:PF14_0288 cytochrome c oxidase subunit II precursor, putative;
K02261 cytochrome c oxidase subunit II [EC:1.9.3.1]
Length=172
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 0/44 (0%)
Query 12 FDSYIIPTSELKPGELRLLEVDNRVVLPIEITIRMLVSSEDVLH 55
F S ++ +L+PG LR LEVD R+ LP I LV++ DV+H
Sbjct 61 FQSNMVTDEDLQPGMLRQLEVDKRLTLPTRTHISFLVTATDVIH 104
Lambda K H
0.317 0.139 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2009826104
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40