bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_0406_orf1 Length=352 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_031040 exosome complex exonuclease, putative ; K116... 106 1e-22 ath:AT3G61620 RRP41; RRP41; 3'-5'-exoribonuclease/ RNA binding... 96.7 1e-19 pfa:PF14_0256 exosome complex exonuclease rrp41, putative; K11... 80.1 1e-14 xla:495942 exosc4; exosome component 4; K11600 exosome complex... 77.8 6e-14 bbo:BBOV_IV005940 23.m05757; exosome complex exonuclease rrp41... 73.2 1e-12 dre:393712 exosc4, MGC73175, zgc:73175; exosome component 4; K... 72.8 2e-12 tgo:TGME49_119650 3' exoribonuclease, putative (EC:2.7.7.56); ... 68.9 3e-11 hsa:54512 EXOSC4, FLJ20591, RRP41, RRP41A, Rrp41p, SKI6, Ski6p... 67.4 9e-11 mmu:109075 Exosc4, 1110039I09Rik, 1500001N04Rik, Rrp41; exosom... 67.0 9e-11 dre:326786 exosc6, id:ibd1130, wu:fe17d05, zgc:110071; exosome... 63.9 9e-10 ath:AT4G27490 3' exoribonuclease family domain 1-containing pr... 62.8 2e-09 dre:751632 exosc5, MGC153707, si:ch211-194n6.2, zgc:153707; ex... 54.3 7e-07 mmu:27998 Exosc5, D7Wsu180e; exosome component 5; K12590 exoso... 50.8 7e-06 tpv:TP01_0398 exosome complex exonuclease Rrp41; K11600 exosom... 50.4 1e-05 hsa:56915 EXOSC5, MGC111224, MGC12901, RRP41B, RRP46, Rrp46p, ... 50.1 1e-05 sce:YGR195W SKI6, ECM20, RRP41; Exosome non-catalytic core com... 50.1 1e-05 pfa:PFB0415c 3' exoribonuclease, putative 49.3 2e-05 cel:Y6D11A.1 exos-4.2; EXOSome (multiexonuclease complex) comp... 45.1 4e-04 cpv:cgd4_3930 archeo-eukaryotic exosomal RNAse ; K11600 exosom... 43.5 0.001 cpv:cgd4_1950 RPR46-like RNAse PH domain ; K12590 exosome comp... 42.4 0.003 tgo:TGME49_106610 3' exoribonuclease family, domain 1 containi... 38.9 0.033 mmu:69944 2810021J22Rik, AI449137; RIKEN cDNA 2810021J22 gene;... 37.7 0.065 mmu:72544 Exosc6, 2610510N21Rik, C76919, MGC151362, Mtr3; exos... 37.4 0.078 tpv:TP01_1052 hypothetical protein 37.0 0.11 hsa:118460 EXOSC6, EAP4, MTR3, Mtr3p, hMtr3p, p11; exosome com... 37.0 0.12 ath:AT3G46210 3' exoribonuclease family domain 1-containing pr... 35.0 0.40 cel:C14A4.5 crn-5; Cell-death-Related Nuclease family member (... 33.1 1.6 bbo:BBOV_III011810 17.m10653; hypothetical protein 32.0 3.5 ath:AT5G14580 polyribonucleotide nucleotidyltransferase, putat... 31.2 6.0 > tgo:TGME49_031040 exosome complex exonuclease, putative ; K11600 exosome complex component RRP41 Length=352 Score = 106 bits (265), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 104/311 (33%), Positives = 155/311 (49%), Gaps = 35/311 (11%) Query 67 FRADGRLVYECRQLRCRTSVPS---------AAASD---LTTSAEVPDGPAIATAGASGS 114 RADGR +E R+LR T VPS A+ASD +S E + +A + G Sbjct 21 LRADGRRPHELRELRFSTCVPSLLPSPSARPASASDPRKADSSVESEEN-NLAPFASGGV 79 Query 115 LASCDGRAVVSLGCTXVMALVYGPQP----SSNMS-TLSTSSSNTWS----VSCTDNTSA 165 DGR++VS G T V A V+GP+P + N S L ++S WS + + S Sbjct 80 GTHADGRSLVSFGSTKVAAFVFGPRPLPAGAGNASRALVSASGGGWSERGVLEEGFDASG 139 Query 166 AMQMMHEGKQGLARGELAVPVSVVCSVGLVDSCVR-----TRSRYTPDAAEIAAAVRTAA 220 A ++ +G + G S++C VG+ TRS + E+A VR Sbjct 140 ADSVLGQGGAAGSGGAAER-ASLLCRVGIAPFSGDWRADVTRSGGAAEEHEVALGVRKVV 198 Query 221 EGIILRRLYTQTRITISILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTVLLLPQ 280 E +IL ++ I + + V+ +DG IL+AS+ AASLAL DAG+A +D + + + + +P+ Sbjct 199 ESVILADTCPRSLICLFVHVVENDGGILAASISAASLALVDAGIATKDFVAAMSCVYMPR 258 Query 281 QFPQQQQEPLLLVDPTSDETRSGGPCLTLGVTAETNNIVALQLTGRVDRQTYEKMFEVCL 340 Q PLL DP E ++G P LTL + + + LQL G+V +E+M+E C Sbjct 259 QL-----TPLL--DPPRAELQTGAPSLTLAMLVSSGEVSLLQLDGQVSTDVFEQMYEACA 311 Query 341 RGCLATAECMK 351 GC E MK Sbjct 312 AGCREVGEAMK 322 > ath:AT3G61620 RRP41; RRP41; 3'-5'-exoribonuclease/ RNA binding; K11600 exosome complex component RRP41 Length=241 Score = 96.7 bits (239), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 84/294 (28%), Positives = 126/294 (42%), Gaps = 72/294 (24%) Query 60 EAVSPCGFRADGRLVYECRQLRCRTSVPSAAASDLTTSAEVPDGPAIATAGASGSLASCD 119 E V+P G R DGR E RQ+ AEV G ++ D Sbjct 2 EYVNPEGLRLDGRRFNEMRQI----------------VAEV------------GVVSKAD 33 Query 120 GRAVVSLGCTXVMALVYGPQPSSNMSTLSTSSSNTWSVSCTDNTSAAMQMMHEGKQGLAR 179 G AV +G T V+A VYGP+ N S N +V Sbjct 34 GSAVFEMGNTKVIAAVYGPREIQNKSQ---QKKNDHAV---------------------- 68 Query 180 GELAVPVSVVC--SVGLVDSCVRTRSRYTPDAAEIAAAVRTAAEGIILRRLYTQTRITIS 237 V+C S+ + R R ++ + E++ +R E IL L ++I I Sbjct 69 --------VLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIF 120 Query 238 ILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTVLLLPQQFPQQQQEPLLLVDPTS 297 + VL DG SA + AA+LALADAG+ MRDL SC+ L PLL ++ Sbjct 121 LQVLQADGGTRSACINAATLALADAGIPMRDLAVSCSAGYL-------NSTPLLDLNYVE 173 Query 298 DETRSGGPCLTLGVTAETNNIVALQLTGRVDRQTYEKMFEVCLRGCLATAECMK 351 D +GG +T+G+ + + + LQ+ ++ +T+E +F + GC A AE ++ Sbjct 174 DS--AGGADVTVGILPKLDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIR 225 > pfa:PF14_0256 exosome complex exonuclease rrp41, putative; K11600 exosome complex component RRP41 Length=246 Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 67/294 (22%), Positives = 112/294 (38%), Gaps = 69/294 (23%) Query 59 AEAVSPCGFRADGRLVYECRQLRCRTSVPSAAASDLTTSAEVPDGPAIATAGASGSLASC 118 + ++ G+R DGR ECR ++ + G L Sbjct 4 VQYINDEGYRIDGRKNDECRLIKI-------------------------SLGNGNELIDV 38 Query 119 DGRAVVSLGCTXVMALVYGPQPSSNMSTLSTSSSNTWSVSCTDNTSAAMQMMHEGKQGLA 178 DG + +G T + A + GP V C N + + E K+ + Sbjct 39 DGFSFFEIGNTKLFAYIQGPNEYR-------RPDEKCLVKC--NVFLSPFNILEKKRKKS 89 Query 179 RGELAVPVSVVCSVGLVDSCVRTRSRYTPDAAEIAAAVRTAAEGIILRRLYTQTRITISI 238 + D+ R EI++ +R IIL LY + I I + Sbjct 90 K----------------DNVTR----------EISSYIRNICNHIILLDLYKNSEINIFL 123 Query 239 LVLADDGSILSASLIAASLALADAGVAMRDLLPSCTVLLLPQQFPQQQQEPLLLVDPTSD 298 ++ DG + +A++ LAL DAG+A++ + + +VL L ++VD Sbjct 124 YIIERDGGLKAAAVNTCILALIDAGIAIKYFISASSVLYLQNN---------IIVDGNQF 174 Query 299 ETRSGGPCLTLGVTAETNNIVALQLTGRVDRQTYEKMFEVCLRGCLATAECMKV 352 E SG P LTL + +NNIV L+ V ++ M + C + C+ MK+ Sbjct 175 EVNSGSPELTLAIDMSSNNIVLLEFDAEVPIDIFQSMLKTCAQACIHVGNIMKL 228 > xla:495942 exosc4; exosome component 4; K11600 exosome complex component RRP41 Length=249 Score = 77.8 bits (190), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 68/288 (23%), Positives = 111/288 (38%), Gaps = 67/288 (23%) Query 56 MFKAEAVSPCGFRADGRLVYECRQLRCRTSVPSAAASDLTTSAEVPDGPAIATAGASGSL 115 M E +S G+R DGR E R++R R G Sbjct 1 MAGMELLSDQGYRVDGRKAGELRKIRARM----------------------------GVF 32 Query 116 ASCDGRAVVSLGCTXVMALVYGPQPSSNMSTLSTSSSNTWSVSCTDNTSAAMQMMHEGKQ 175 A DG A + G T +A+VYGP + S S C N +M G++ Sbjct 33 AQADGSAYIEQGNTKALAVVYGPHE------IRGSRSKMLHDRCVINCQYSMATFSTGER 86 Query 176 GLARGELAVPVSVVCSVGLVDSCVRTRSRYTPDAAEIAAAVRTAAEGIILRRLYTQTRIT 235 + R ++E+ ++ E IL +LY +++I Sbjct 87 ------------------------KRRPHGDRKSSEMTLHLKQTFEAAILTQLYPRSQID 122 Query 236 ISILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTVLLLPQQFPQQQQEPLLLVDP 295 I + +L DG + AA+LA+ DAG+ MRD + +C+ + E L D Sbjct 123 IYVQILQADGGNYCTCVNAATLAVIDAGIPMRDYVCACSAGFI---------EDTPLADL 173 Query 296 TSDETRSGGPCLTLGVTAETNNIVALQLTGRVDRQTYEKMFEVCLRGC 343 + E +GGP L L + +++ I L++ R+ E++ E + C Sbjct 174 SYVEEATGGPQLALALLPKSDQIALLEMNSRLHEDHLERVMEAVSKAC 221 > bbo:BBOV_IV005940 23.m05757; exosome complex exonuclease rrp41 (EC:3.1.13.-); K11600 exosome complex component RRP41 Length=259 Score = 73.2 bits (178), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 69/287 (24%), Positives = 112/287 (39%), Gaps = 61/287 (21%) Query 56 MFKAEAVSPCGFRADGRLVYECRQLRCRTSVPSAAASDLTTSAEVPDGPAIATAGASGSL 115 M K E +S G R DGR E R + ++ GP + Sbjct 1 MSKIEYISLEGLRIDGRRPSEVRHI------------------DILCGPECGV-----DI 37 Query 116 ASCDGRAVVSLGCTXVMALVYGPQPSSNMSTLSTSSSNTWSVSCTDNTSAAMQMMHEGKQ 175 + DG A V+ G T V A + GP T K+ Sbjct 38 INYDGVAQVTQGLTKVQAFINGPTDIGRSKT---------------------------KE 70 Query 176 GLARGELAVPVSVVCSVGLVDSCVRTRSRYTPDAAEIAAAVRTAAEGIILRRLYTQTRIT 235 G + PV + C V + R EI+ AV E +I+ LY + I Sbjct 71 GFETAD--SPVEIRCEVCIPSERKSMGHRNNDATVEISRAVVGTFEPVIISHLYKNSTIH 128 Query 236 ISILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTVLLLPQQFPQQQQEPLLLVDP 295 I + VL DG + + + A +AL DAG+AM+D++ +CT ++L + LL+DP Sbjct 129 IFVNVLEADGGVKATVINAVLIALIDAGIAMKDIIVACTAVMLNET---------LLIDP 179 Query 296 TSDETRSGGPCLTLGVTAETNNIVALQLTGRVDRQTYEKMFEVCLRG 342 E + LTL ++ ++ + L + ++Y ++ E ++G Sbjct 180 NQLEINASIMELTLALSVSNEELIHIDLRSKYPIKSYAEIIEKAIKG 226 > dre:393712 exosc4, MGC73175, zgc:73175; exosome component 4; K11600 exosome complex component RRP41 Length=245 Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 67/284 (23%), Positives = 108/284 (38%), Gaps = 67/284 (23%) Query 60 EAVSPCGFRADGRLVYECRQLRCRTSVPSAAASDLTTSAEVPDGPAIATAGASGSLASCD 119 E +S G+R DGR E R+++ R SV A D Sbjct 5 ELLSDQGYRLDGRKATELRKVQARMSV----------------------------FAQAD 36 Query 120 GRAVVSLGCTXVMALVYGPQPSSNMSTLSTSSSNTWSVSCTDNTSAAMQMMHEGKQGLAR 179 G A + G T +A+VYGP + S S + N +M ++ Sbjct 37 GSAYLEQGNTKALAVVYGPHE------IRGSRSKSLHDRAIINCQYSMATFSTAER---- 86 Query 180 GELAVPVSVVCSVGLVDSCVRTRSRYTPDAAEIAAAVRTAAEGIILRRLYTQTRITISIL 239 + R ++E++ ++ E +L LY +++I I + Sbjct 87 --------------------KRRPHGDRKSSEMSLHLKQTFEAAVLTELYPRSQIDIYVK 126 Query 240 VLADDGSILSASLIAASLALADAGVAMRDLLPSCTVLLLPQQFPQQQQEPLLLVDPTSDE 299 +L DG SA + AA+LAL DAG+ MRD + +C+ + E L D E Sbjct 127 ILQADGGNYSACVNAATLALVDAGIPMRDYVCACSAGFV---------EDTPLADLCHAE 177 Query 300 TRSGGPCLTLGVTAETNNIVALQLTGRVDRQTYEKMFEVCLRGC 343 GG L L + + NI LQ+ R+ + + + E + C Sbjct 178 ESGGGTALALALLPRSGNIALLQMDARLHQDHLDTLMEAAMTAC 221 > tgo:TGME49_119650 3' exoribonuclease, putative (EC:2.7.7.56); K11600 exosome complex component RRP41 Length=303 Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 60/240 (25%), Positives = 102/240 (42%), Gaps = 40/240 (16%) Query 114 SLASCDGRAVVSLGCTXVMALVYGPQPSSNMSTLSTSSSNTWSVSCTDNTSAAMQMMHEG 173 SLA+ G A VS+G T + VYGP+P+ ++ S N Sbjct 65 SLAAAAGSAFVSVGKTKLNCAVYGPRPNMKHASQDRGSIN-------------------- 104 Query 174 KQGLARGELAVPVSVVCSVGLVDSCVRTRSRYTPDAAEIAAAVRTAAEGIILRRLYTQTR 233 L + + G D+C D A + + A ++ LY ++ Sbjct 105 --------LEFRFAPFATTG-KDACSER------DTAHLTTLLHQALNAVVRLDLYAKST 149 Query 234 ITISILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTVLLLPQQFPQQQQEPLLLV 293 I +S+LVL DDG ++SA+L LALADAG+ M D++ + + P +L+ Sbjct 150 IAVSVLVLEDDGGLISAALTCIGLALADAGIEMLDVVTGASACVFSVGHPDSPPRTCVLL 209 Query 294 DPTSDETRSGGP----CLTLGVTAETNNIVALQLTGR-VDRQTYEKMFEVCLRGCLATAE 348 DP ++E R+ + LG ++ + +G + ++ E+M +C C A A+ Sbjct 210 DPDAEERRAFADKNCTFVDLGYCPALASVCFIHASGTLLATESGEQMLRLCEAACYAVAD 269 > hsa:54512 EXOSC4, FLJ20591, RRP41, RRP41A, Rrp41p, SKI6, Ski6p, hRrp41p, p12A; exosome component 4; K11600 exosome complex component RRP41 Length=245 Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 68/285 (23%), Positives = 109/285 (38%), Gaps = 73/285 (25%) Query 56 MFKAEAVSPCGFRADGRLVYECRQLRCRTSVPSAAASDLTTSAEVPDGPAIATAGASGSL 115 M E +S G+R DGR E R+++ R V Sbjct 1 MAGLELLSDQGYRVDGRRAGELRKIQARMGV----------------------------F 32 Query 116 ASCDGRAVVSLGCTXVMALVYGPQP---SSNMSTLSTSSSNTWSVSCTDNTSAAMQMMHE 172 A DG A + G T +A+VYGP S + + N S T +T + H Sbjct 33 AQADGSAYIEQGNTKALAVVYGPHEIRGSRARALPDRALVNCQYSSATFSTGERKRRPHG 92 Query 173 GKQGLARGELAVPVSVVCSVGLVDSCVRTRSRYTPDAAEIAAAVRTAAEGIILRRLYTQT 232 ++ C +GL +R E IL +L+ ++ Sbjct 93 DRKS-------------CEMGL--------------------QLRQTFEAAILTQLHPRS 119 Query 233 RITISILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTVLLLPQQFPQQQQEPLLL 292 +I I + VL DG +A + AA+LA+ DAG+ MRD + +C+ + + L Sbjct 120 QIDIYVQVLQADGGTYAACVNAATLAVLDAGIPMRDFVCACSAGFV---------DGTAL 170 Query 293 VDPTSDETRSGGPCLTLGVTAETNNIVALQLTGRVDRQTYEKMFE 337 D + E +GGP L L + + I L++ R+ E++ E Sbjct 171 ADLSHVEEAAGGPQLALALLPASGQIALLEMDARLHEDHLERVLE 215 > mmu:109075 Exosc4, 1110039I09Rik, 1500001N04Rik, Rrp41; exosome component 4; K11600 exosome complex component RRP41 Length=245 Score = 67.0 bits (162), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 68/285 (23%), Positives = 110/285 (38%), Gaps = 73/285 (25%) Query 56 MFKAEAVSPCGFRADGRLVYECRQLRCRTSVPSAAASDLTTSAEVPDGPAIATAGASGSL 115 M E +S G+R DGR E R+++ R V Sbjct 1 MAGLELLSDQGYRIDGRRAGELRKIQARMGV----------------------------F 32 Query 116 ASCDGRAVVSLGCTXVMALVYGPQP---SSNMSTLSTSSSNTWSVSCTDNTSAAMQMMHE 172 A DG A + G T +A+VYGP S + + + N S T +T + H Sbjct 33 AQADGSAYIEQGNTKALAVVYGPHEIRGSRSRALPDRALVNCQYSSATFSTGERKRRPHG 92 Query 173 GKQGLARGELAVPVSVVCSVGLVDSCVRTRSRYTPDAAEIAAAVRTAAEGIILRRLYTQT 232 ++ C +GL +R E IL +L+ ++ Sbjct 93 DRKS-------------CEMGL--------------------QLRQTFEAAILTQLHPRS 119 Query 233 RITISILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTVLLLPQQFPQQQQEPLLL 292 +I I + VL DG +A + AA+LA+ DAG+ MRD + +C+ + + L Sbjct 120 QIDIYVQVLQADGGTYAACVNAATLAVMDAGIPMRDFVCACSAGFV---------DGTAL 170 Query 293 VDPTSDETRSGGPCLTLGVTAETNNIVALQLTGRVDRQTYEKMFE 337 D + E +GGP L L + + I L++ R+ E++ E Sbjct 171 ADLSHVEEAAGGPQLALALLPASGQIALLEMDSRLHEDHLEQVLE 215 > dre:326786 exosc6, id:ibd1130, wu:fe17d05, zgc:110071; exosome component 6 (EC:3.1.13.-); K12587 exosome complex component MTR3, animal type Length=271 Score = 63.9 bits (154), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 18/130 (13%) Query 222 GIILRRLYTQTRITISILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTVLLLPQQ 281 G+ L R Y +++I ++++VL +DGS+L+ ++ AS+ALADAG+ M D++ CT+ Sbjct 128 GVCLHR-YPRSQIDVNVMVLENDGSVLAHAVTCASMALADAGIEMYDIVLGCTL------ 180 Query 282 FPQQQQEPLLLVDPTSDET--------RSGGPCLTLGVTAETNNIVALQLTGRVDRQTYE 333 +Q LVDP+ E C+TL + N + L G + T Sbjct 181 ---RQSGNACLVDPSYAEECGSWQEGYGDNQGCVTLALLPNLNQVSGLNADGEMREDTLT 237 Query 334 KMFEVCLRGC 343 + C+ GC Sbjct 238 EAMRTCMDGC 247 > ath:AT4G27490 3' exoribonuclease family domain 1-containing protein Length=256 Score = 62.8 bits (151), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 69/276 (25%), Positives = 106/276 (38%), Gaps = 57/276 (20%) Query 83 RTSVPSAAASDLTTSAEVPDG-------PAIATAGASGSLASCDGRAVVSLGCTXVMALV 135 R+ +P SDL S PDG PA+ GA ++S G A G T V+ V Sbjct 19 RSRLPIFKDSDLDWSR--PDGRGFHQCRPALLQTGA---VSSASGSAYAEFGNTKVIVSV 73 Query 136 YGPQPSSNMSTLSTSSSNTWSVSCTDNTSAAMQMMHEGKQGLARGELAVPVSVVCSVGLV 195 +GP+ S S +VS T+ S + QG Sbjct 74 FGPRESKKAMVYSDVGRLNCNVSYTNFASPTL------GQGT------------------ 109 Query 196 DSCVRTRSRYTPDAAEIAAAVRTAAEGIILRRLYTQTRITISILVLADDGSILSASLIAA 255 D E ++ + A EG+I+ + +T + + LVL GS LS + A Sbjct 110 ------------DHKEYSSMLHKALEGVIMMETFPKTTVDVFALVLESGGSDLSVLISCA 157 Query 256 SLALADAGVAMRDLLPSCTVLLLPQQFPQQQQEPLLLVDPTSDETRSGGPCLTLGVTAET 315 SLALADAG+ M DL+ + +V + + L++DP ++E + Sbjct 158 SLALADAGIMMYDLITAVSVSCIGKS---------LMIDPVTEEEGCEDGSFMMTCMPSR 208 Query 316 NNIVALQLTGRVDRQTYEKMFEVCLRGCLATAECMK 351 I L +TG + ++CL E M+ Sbjct 209 YEITQLTITGEWTTPNINEAMQLCLDASSKLGEIMR 244 > dre:751632 exosc5, MGC153707, si:ch211-194n6.2, zgc:153707; exosome component 5; K12590 exosome complex component RRP46 Length=218 Score = 54.3 bits (129), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 59/232 (25%), Positives = 94/232 (40%), Gaps = 50/232 (21%) Query 104 PAIATAGASGSLASC-DGRAVVSLGCTXVMALVYGPQPSSNMSTLSTSSSNTWSVSCTDN 162 P + G+ SL S DG + G T ++A VYGP VS Sbjct 8 PVLREYGSEQSLLSRPDGSSTFVQGDTSILAGVYGP--------------AEVKVSKEIY 53 Query 163 TSAAMQMMHEGKQGLARGELAVPVSVVCSVGLVDSCVRTRSRYTPDAAEIAAAVRTAAEG 222 A ++++ + K GL VR R+R VR E Sbjct 54 DRATVEVLIQPKMGLPS-------------------VRERAR--------EQCVRETCEA 86 Query 223 IILRRLYTQTRITISILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTVLLLPQQF 282 +L L+ ++ +T+ + V+ DDGS+LS L AA +AL DAG+ M L S T + Sbjct 87 ALLLTLHPRSSLTVILQVVHDDGSLLSCCLNAACMALMDAGLPMSRLFCSVTCAI----- 141 Query 283 PQQQQEPLLLVDPTSDETRSGGPCLTLGVTAETNNIVALQLTGRVDRQTYEK 334 +E ++ DPT+ + + LT + + N++ TG Q ++ Sbjct 142 ---SKEGQIITDPTARQEKVSRALLTFAIDSNERNVLMSSTTGSFSVQELQQ 190 > mmu:27998 Exosc5, D7Wsu180e; exosome component 5; K12590 exosome complex component RRP46 Length=235 Score = 50.8 bits (120), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 8/104 (7%) Query 216 VRTAAEGIILRRLYTQTRITISILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTV 275 VR E ++L L+ +T IT+ + V++D GS+L+ L AA +AL DAGV MR L T Sbjct 98 VRNTCEAVVLGALHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVTC 157 Query 276 LLLPQQFPQQQQEPLLLVDPTSDETRSGGPCLTLGVTAETNNIV 319 L + L++DPT+ + + LT + + ++ Sbjct 158 AL--------DSDGNLVLDPTTKQEKEARAILTFALDSAEQKLL 193 > tpv:TP01_0398 exosome complex exonuclease Rrp41; K11600 exosome complex component RRP41 Length=259 Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 6/99 (6%) Query 180 GELAVPVSVVCSVGLVDSCVRTRSRYTPDA---AEIAAAVRTAAEGIILRRLYTQTRITI 236 G L V + C + L + + +P+ ++A AV++ + +I+ Y + I+I Sbjct 98 GILEEKVDIHCEILL---STEKKVKNSPNERLIKDLAMAVKSTYQEMIISHCYKTSSISI 154 Query 237 SILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTV 275 I V+ DGSI S L A LAL DAGV+++D++ S TV Sbjct 155 FINVIEYDGSIKSTVLNAVGLALIDAGVSLKDIVSSSTV 193 > hsa:56915 EXOSC5, MGC111224, MGC12901, RRP41B, RRP46, Rrp46p, hRrp46p, p12B; exosome component 5; K12590 exosome complex component RRP46 Length=235 Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 8/96 (8%) Query 216 VRTAAEGIILRRLYTQTRITISILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTV 275 +R E ++L L+ +T IT+ + V++D GS+L+ L AA +AL DAGV MR L Sbjct 98 IRNTCEAVVLGTLHPRTSITVVLQVVSDAGSLLACCLNAACMALVDAGVPMRALFCGVAC 157 Query 276 LLLPQQFPQQQQEPLLLVDPTSDETRSGGPCLTLGV 311 L + L++DPTS + + LT + Sbjct 158 AL--------DSDGTLVLDPTSKQEKEARAVLTFAL 185 > sce:YGR195W SKI6, ECM20, RRP41; Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; has similarity to E. coli RNase PH and to human hRrp41p (EXOSC4) (EC:3.1.13.-); K11600 exosome complex component RRP41 Length=246 Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 61/297 (20%), Positives = 106/297 (35%), Gaps = 71/297 (23%) Query 56 MFKAEAVSPCGFRADGRLVYECRQLRCRTSVPSAAASDLTTSAEVPDGPAIATAGASGSL 115 M + E SP G R DGR E R+ + AA Sbjct 1 MSRLEIYSPEGLRLDGRRWNELRRFESSINTHPHAA------------------------ 36 Query 116 ASCDGRAVVSLGCTXVMALVYGPQPSSNMSTLSTSSSNTWSVSCTDNTSAAMQMMHEGKQ 175 DG + + G ++ LV GP+ S + TS + Sbjct 37 ---DGSSYMEQGNNKIITLVKGPKEPRLKSQMDTSKA----------------------- 70 Query 176 GLARGELAVPVSVVCSVGLVDSCVRTRSRYTPD--AAEIAAAVRTAAEGIILRRLYTQTR 233 ++V ++ R++S + + EI ++ E ++ +Y +T Sbjct 71 ---------LLNVSVNITKFSKFERSKSSHKNERRVLEIQTSLVRMFEKNVMLNIYPRTV 121 Query 234 ITISILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTVLLLPQQFPQQQQEPLLLV 293 I I I VL DG I+ + + +LAL DAG++M D + +V L PLL Sbjct 122 IDIEIHVLEQDGGIMGSLINGITLALIDAGISMFDYISGISVGLYDTT-------PLLDT 174 Query 294 DPTSDETRSGGPCLTLGVTAETNNIVALQLTGRVDRQTYEKMFEVCLRGCLATAECM 350 + + S +TLGV ++ + L + ++ E + + + G + M Sbjct 175 NSLEENAMS---TVTLGVVGKSEKLSLLLVEDKIPLDRLENVLAIGIAGAHRVRDLM 228 > pfa:PFB0415c 3' exoribonuclease, putative Length=275 Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 59/144 (40%), Gaps = 37/144 (25%) Query 125 SLGCTXVMALVYGPQPSSNMSTLSTSSSNTWSVSCTDNTSAAMQMMHEGKQGLARGELAV 184 SLG T ++ VYGP P S +T S +G++ + Sbjct 61 SLGNTKILTTVYGPNPDSKYATYS------------------------------KGKVFL 90 Query 185 PVSVVCSVGLVDSCVRTRSRYTPDAAEIAAAVRTAAEGIILRRLYTQTRITISILVLADD 244 V + ++ + + R R +I + + IIL Y Q I I L++ DD Sbjct 91 DVKSL-NINTIGASDRQRD------DDIKSLLIECISNIILLEKYPQCSIKIKCLIIQDD 143 Query 245 GSILSASLIAASLALADAGVAMRD 268 G LSA+L SLAL A + M+D Sbjct 144 GGCLSATLTCISLALIKAQIQMKD 167 > cel:Y6D11A.1 exos-4.2; EXOSome (multiexonuclease complex) component family member (exos-4.2) Length=241 Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 8/128 (6%) Query 210 AEIAAAVRTAAEGIILRRLYTQTRITISILVLADDGSILSASLIAASLALADAGVAMRDL 269 AE A + +A +I Y I I I VL+DDG +LS +L A +LA++ +G+ L Sbjct 97 AEYRAQLASAVSAVIFASKYPGKVIEIEITVLSDDGGVLSTALSAVTLAISHSGIENMGL 156 Query 270 LPSCTVLLLPQQFPQQQQEPLLLVDPTSDETRSGGPCLTLGVTAETNNIVALQLTGRVDR 329 + S V + + L DP++ E+ +T + + GR+ Sbjct 157 MASVHVAM--------NSDGECLTDPSTSESEGAIGGVTFAFVPNLGQTTCVDIYGRIPL 208 Query 330 QTYEKMFE 337 ++ + E Sbjct 209 KSTSSLLE 216 > cpv:cgd4_3930 archeo-eukaryotic exosomal RNAse ; K11600 exosome complex component RRP41 Length=351 Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust. Identities = 62/268 (23%), Positives = 103/268 (38%), Gaps = 82/268 (30%) Query 60 EAVSPCGFRADGRLVYECRQLRCRTSVPSAAASDLTTSAEVPDGPAIATAGASGSLASCD 119 E V+ G R DGR + E R+++C I G + D Sbjct 91 EIVNKHGIRQDGRKLTEIRRIKC-----------------------IINEGNQRGIE--D 125 Query 120 GRAVVSLGCTXVMALVYGPQPSSNMSTLSTSSSNTWSVSCTDNTSAAMQMMHEGKQGLAR 179 G G ++ + GP P S +++ T+N S Sbjct 126 GNVYFEQGQNKLIVSIVGPVPISG------------NINYTNNNSG-------------- 159 Query 180 GELAVPVSVVCSVGLVDSCVRTRSRYTPDAAEIAAAVRTAAE-GIILRRL--------YT 230 V + C+ R + D + R E G+I+ R Y+ Sbjct 160 ------VQINCNF-------RVSPFSSQDRRKRGKNDRFCIESGLIISRTFSSVICDQYS 206 Query 231 QTRITISILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTVLLLPQQFPQQQQEPL 290 +++I I+I++L DGS+ SA++ A S+ALA +G++M+DL+ S T L +Q Sbjct 207 KSQIIINIIILEGDGSVRSAAINATSIALAISGISMKDLIVSATCGLYGKQ--------- 257 Query 291 LLVDPTSDETRSGGPCLTLGVTAETNNI 318 +L D T E S L + + + N+I Sbjct 258 VLYDLTQSEMESLKGTLLMAIHSTDNDI 285 > cpv:cgd4_1950 RPR46-like RNAse PH domain ; K12590 exosome complex component RRP46 Length=244 Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust. Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 1/100 (1%) Query 221 EGIILRRLYTQTRITISILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTVLLLPQ 280 E +I +++ I+I++ ++++DG IL + AA LAL D G+ M + P + Sbjct 90 EKVIDFNSFSRCVISITLQIVSEDGPILPVCINAAVLALIDLGIPM-EFFPLAVSIAESS 148 Query 281 QFPQQQQEPLLLVDPTSDETRSGGPCLTLGVTAETNNIVA 320 F ++ L++DPT E C T+ + NI + Sbjct 149 HFYGERDISHLMLDPTQSEFEQCISCSTIVINTTEKNIFS 188 > tgo:TGME49_106610 3' exoribonuclease family, domain 1 containing protein (EC:2.7.7.56) Length=392 Score = 38.9 bits (89), Expect = 0.033, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 68/159 (42%), Gaps = 27/159 (16%) Query 120 GRAVVSLGCTXVMALVYGPQPSSNMSTLSTSSSNTWSVSCTDNTSAAMQMMHEGKQGLAR 179 G A VS G T V+ALV GP + S+S H + LA Sbjct 53 GSARVSQGLTSVIALVVGPVEAPPGPKYSSSGC----------------FFHVILKPLAG 96 Query 180 GELAVPVSVVCSVGLVDSCV---------RTRSRYTPDAAE--IAAAVRTAAEGIILRRL 228 + ++G DS V R R + ++ E + ++T + ++L Sbjct 97 PPMLSAARTAAAIGGCDSAVASGTARGTRRGRGAFGSESFERWMECQLQTLLQHMVLPGE 156 Query 229 YTQTRITISILVLADDGSILSASLIAASLALADAGVAMR 267 Y + + +++++L DDG SA + AA AL DAGV++R Sbjct 157 YPRCLVQLTLMILQDDGGAESACINAALAALIDAGVSLR 195 > mmu:69944 2810021J22Rik, AI449137; RIKEN cDNA 2810021J22 gene; K09228 KRAB domain-containing zinc finger protein Length=539 Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust. Identities = 35/107 (32%), Positives = 46/107 (42%), Gaps = 10/107 (9%) Query 98 AEVPDG-PAI-ATAGASGSLASCDGRAVVSLGCTXVMALVYG-PQPSSNMSTLSTSSSNT 154 + PDG PA A AG +L S G+ GC V+ P+P SN S S+ SN Sbjct 270 GKCPDGEPAFRAKAGLQHTLHSW-GKP---RGCNDNKKCVHQMPKPRSNQSVFSSKESNC 325 Query 155 WSVSCTDNTSAAMQMMHEGKQGLARGELAVPVSVVCSVGLVDSCVRT 201 C D+T + Q H GK+ E + PV + C RT Sbjct 326 VKTFCPDSTLSVQQRPHTGKKPQ---ESSTPVKINSQPRRRHRCGRT 369 > mmu:72544 Exosc6, 2610510N21Rik, C76919, MGC151362, Mtr3; exosome component 6 (EC:3.1.13.-); K12587 exosome complex component MTR3, animal type Length=273 Score = 37.4 bits (85), Expect = 0.078, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 70/148 (47%), Gaps = 12/148 (8%) Query 202 RSRYTPDAA-----EIAAAVRTAAEGIILRRLYTQTRITISILVLADDGSILSASLIAAS 256 R R P E+ A++ A E + Y + ++ +S L+L D G L+A+L AA+ Sbjct 108 RRRRAPQGGGGEDRELGLALQEALEPAVRLGRYPRAQLEVSALLLEDGGCALAAALTAAA 167 Query 257 LALADAGVAMRDLLPSCTVLLLPQQFPQQQQEPLLLVDPTSDETRSGGPCLTLGVTAETN 316 LALADAGV M DL+ C + L P P L+DPT E LT+ + N Sbjct 168 LALADAGVEMYDLVVGCGLSLTP------GPSPTWLLDPTRLEEEHSAAGLTVALMPVLN 221 Query 317 NIVALQLTGRVDR-QTYEKMFEVCLRGC 343 + L +G + +++ + L GC Sbjct 222 QVAGLLGSGEGGQTESWTDAVRLGLEGC 249 > tpv:TP01_1052 hypothetical protein Length=148 Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%) Query 205 YTPDAAE-IAAAVRTAAEGIILRRLYTQTRITISILVLADDGSILSASLIAASLALADAG 263 +TP E + + + E IL + Y I I+V DDG +L A ++ L+L D G Sbjct 75 HTPKYLETLKSHIIETFERHILLQNYPSQIIEAYIIVSNDDGGLLPALIMGMCLSLIDCG 134 Query 264 VAMRDLLPSCTVL 276 + + D++ +C+V+ Sbjct 135 IQVYDVISACSVV 147 > hsa:118460 EXOSC6, EAP4, MTR3, Mtr3p, hMtr3p, p11; exosome component 6; K12587 exosome complex component MTR3, animal type Length=272 Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust. Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 6/108 (5%) Query 211 EIAAAVRTAAEGIILRRLYTQTRITISILVLADDGSILSASLIAASLALADAGVAMRDLL 270 E+A A++ A E + Y + ++ +S L+L D GS L+A+L AA+LALADAGV M DL+ Sbjct 121 ELALALQEALEPAVRLGRYPRAQLEVSALLLEDGGSALAAALTAAALALADAGVEMYDLV 180 Query 271 PSCTVLLLPQQFPQQQQEPLLLVDPTSDETRSGGPCLTLGVTAETNNI 318 C + L P P L+DPT E LT+ + N + Sbjct 181 VGCGLSLAPGPAPT------WLLDPTRLEEERAAAGLTVALMPVLNQV 222 > ath:AT3G46210 3' exoribonuclease family domain 1-containing protein; K12590 exosome complex component RRP46 Length=239 Score = 35.0 bits (79), Expect = 0.40, Method: Compositional matrix adjust. Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 0/39 (0%) Query 231 QTRITISILVLADDGSILSASLIAASLALADAGVAMRDL 269 T ++ I V+ DDGS+L ++ AA AL DAG+ M+ L Sbjct 99 NTTTSVIIQVVHDDGSLLPCAINAACAALVDAGIPMKHL 137 > cel:C14A4.5 crn-5; Cell-death-Related Nuclease family member (crn-5); K12590 exosome complex component RRP46 Length=214 Score = 33.1 bits (74), Expect = 1.6, Method: Compositional matrix adjust. Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 9/73 (12%) Query 227 RLYTQTRITISILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTVLLLPQQFPQQQ 286 L+ T I++++ + DDGS+ + ++ A AL D G+ + C VL++ + Sbjct 84 ELFPHTTISVTVHGIQDDGSMGAVAINGACFALLDNGMPFETVF--CGVLIV-------R 134 Query 287 QEPLLLVDPTSDE 299 + L++DPT+ + Sbjct 135 VKDELIIDPTAKQ 147 > bbo:BBOV_III011810 17.m10653; hypothetical protein Length=196 Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust. Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 2/87 (2%) Query 192 VGLVDSCVRTRSRYTPDA--AEIAAAVRTAAEGIILRRLYTQTRITISILVLADDGSILS 249 VG++ VR + P + A++ + E ++ Y + I + + D G + Sbjct 38 VGILSIEVRYSKPHIPSSSDADLRHVLTELFERHVILSRYPRQLIEAWVTIEEDAGGLFG 97 Query 250 ASLIAASLALADAGVAMRDLLPSCTVL 276 A + A SLA AD G+ M D+L + +V+ Sbjct 98 ACVTALSLAFADCGIQMLDILAATSVV 124 > ath:AT5G14580 polyribonucleotide nucleotidyltransferase, putative; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] Length=991 Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 12/69 (17%) Query 234 ITISILVLADDGSILSASLIAASLALADAGVAMRDLLPSCTVLLLPQQFPQQQQEPLLLV 293 I I+ V++ DGS AS+ S+AL DAG+ +R + +V L+ V Sbjct 474 IRINSEVMSSDGSTSMASVCGGSMALMDAGIPLRAHVAGVSVGLITD------------V 521 Query 294 DPTSDETRS 302 DP+S E + Sbjct 522 DPSSGEIKD 530 Lambda K H 0.319 0.129 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 15069884872 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40