bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_0610_orf2 Length=136 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_026440 SNF2/RAD54 helicase family protein (EC:2.7.1... 224 8e-59 cpv:cgd4_140 Swi2/Snf2 ATpase,Rad16 ortholog ; K15083 DNA repa... 196 2e-50 pfa:PFL2440w DNA repair protein rhp16, putative; K15083 DNA re... 195 3e-50 bbo:BBOV_III008700 17.m10681; DNA repair protein rhp16; K15083... 191 4e-49 ath:AT1G05120 SNF2 domain-containing protein / helicase domain... 170 1e-42 ath:AT1G02670 DNA repair protein, putative 140 8e-34 sce:YBR114W RAD16, PSO5; Protein that recognizes and binds dam... 134 8e-32 ath:AT3G20010 SNF2 domain-containing protein / helicase domain... 121 7e-28 ath:AT1G11100 SNF2 domain-containing protein / helicase domain... 120 1e-27 ath:AT1G50410 SNF2 domain-containing protein / helicase domain... 119 3e-27 ath:AT5G43530 SNF2 domain-containing protein / helicase domain... 117 1e-26 ath:AT5G22750 RAD5; RAD5; ATP binding / ATP-dependent helicase... 113 2e-25 ath:AT5G05130 SNF2 domain-containing protein / helicase domain... 111 7e-25 hsa:8458 TTF2, HuF2; transcription termination factor, RNA pol... 110 9e-25 xla:735224 hltf, MGC131155, smarca3; helicase-like transcripti... 109 3e-24 sce:YLR032W RAD5, REV2, SNM2; DNA helicase proposed to promote... 109 3e-24 dre:564651 hltf; helicase-like transcription factor-like; K150... 106 2e-23 mmu:74044 Ttf2, 4632434F22Rik, 8030447N19, AV218430; transcrip... 104 8e-23 bbo:BBOV_III002770 17.m07263; SNF2 family N-terminal domain co... 101 7e-22 pfa:MAL13P1.216 DNA helicase, putative 99.4 3e-21 hsa:6596 HLTF, HIP116, HIP116A, HLTF1, RNF80, SMARCA3, SNF2L3,... 99.0 4e-21 mmu:20585 Hltf, AF010600, BC057116, P113, Smarca3, Snf2l3; hel... 95.1 6e-20 sce:YOR191W ULS1, DIS1, RIS1, TID4; RING finger protein involv... 94.4 8e-20 tgo:TGME49_118480 DNA repair protein, putative (EC:2.7.11.1) 92.0 5e-19 xla:431999 ttf2, MGC81081; transcription termination factor, R... 92.0 5e-19 dre:565357 btaf1, TAFII, wu:fd60h10, wu:fe26c12; BTAF1 RNA pol... 90.5 1e-18 ath:AT3G16600 SNF2 domain-containing protein / helicase domain... 90.1 2e-18 cel:F53H4.1 csb-1; human CSB (Cockayne Syndrome B) homolog fam... 89.7 2e-18 ath:AT3G54280 RGD3; RGD3 (ROOT GROWTH DEFECTIVE 3); ATP bindin... 89.7 3e-18 xla:446222 hells, lsh, nbla10143, pasg, smarca6; helicase, lym... 87.8 9e-18 cel:F15D4.1 btf-1; BTAF (TBP-associated factor) homolog family... 87.8 1e-17 mmu:623474 Rad54b, E130016E03Rik, Fsbp, MGC67261; RAD54 homolo... 87.4 1e-17 sce:YGL163C RAD54, XRS1; DNA-dependent ATPase, stimulates stra... 87.4 1e-17 mmu:15201 Hells, AI323785, E130115I21Rik, LSH, Lysh, PASG, YFK... 87.4 1e-17 pfa:MAL8P1.65 DNA helicase, putative 86.7 2e-17 hsa:9044 BTAF1, KIAA0940, MGC138406, MOT1, TAF(II)170, TAF172,... 86.7 2e-17 mmu:107182 Btaf1, AI414500, AI447930, E430027O22Rik, TAF170; B... 86.7 2e-17 sce:YIL126W STH1, NPS1; ATPase component of the RSC chromatin ... 86.3 3e-17 dre:553328 hells, cb65, im:6911667, pasg, sb:cb65, sb:cb749; h... 85.9 4e-17 dre:559803 novel protein similar to SWI/SNF related, matrix as... 85.5 4e-17 cel:F59A7.8 hypothetical protein 85.5 4e-17 mmu:76251 0610007P08Rik, 1700019D06Rik, 9330134C04Rik, MGC1001... 85.5 4e-17 dre:566768 si:ch211-244p18.3; K11665 DNA helicase INO80 [EC:3.... 85.5 5e-17 hsa:54617 INO80, INO80A, INOC1, hINO80; INO80 homolog (S. cere... 85.1 5e-17 hsa:375748 C9orf102, FLJ37706, MGC30192, MGC43364, RAD26L, SR2... 85.1 6e-17 hsa:3070 HELLS, FLJ10339, LSH, PASG, SMARCA6; helicase, lympho... 85.1 6e-17 cpv:cgd1_1330 SWI/SNF-related, matrix associated, actin-depend... 84.7 8e-17 ath:AT3G57300 INO80; INO80 (INO80 ORTHOLOG); ATP binding / DNA... 84.0 1e-16 tgo:TGME49_005400 DNA repair protein RAD54, putative (EC:2.7.1... 84.0 1e-16 sce:YBR073W RDH54, TID1; DNA-dependent ATPase, stimulates stra... 84.0 1e-16 > tgo:TGME49_026440 SNF2/RAD54 helicase family protein (EC:2.7.11.1 6.1.1.11); K15083 DNA repair protein RAD16 Length=1667 Score = 224 bits (570), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 106/136 (77%), Positives = 121/136 (88%), Gaps = 1/136 (0%) Query 2 RVKREGIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMD 61 R+K+ GIHCA++ GSM+ V+RSNVLYAFNND +LKV+LISLKAGGEGLNLQ+ASRI+LMD Sbjct 1532 RLKKGGIHCAKMVGSMSIVSRSNVLYAFNNDPSLKVLLISLKAGGEGLNLQIASRIFLMD 1591 Query 62 PWWNPAAEMQAIQRAHRIGQT-RPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQ 120 PWWNPAAEMQAIQRAHRIGQ + V +RFI TIEERILQLQEKKQLVFDGTVGA + Sbjct 1592 PWWNPAAEMQAIQRAHRIGQRHKEVIAIRFIAEKTIEERILQLQEKKQLVFDGTVGACDH 1651 Query 121 AMHKLTQEDLRFLFQS 136 AM KLTQ+DLRFLFQ+ Sbjct 1652 AMTKLTQDDLRFLFQN 1667 > cpv:cgd4_140 Swi2/Snf2 ATpase,Rad16 ortholog ; K15083 DNA repair protein RAD16 Length=1278 Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 88/135 (65%), Positives = 111/135 (82%), Gaps = 0/135 (0%) Query 2 RVKREGIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMD 61 R+K+ I C L GSM+ + R+++LY+FN +LK+ILISLKAGGEGLNLQVA+ ++L+D Sbjct 1144 RLKKANIGCVMLAGSMSILQRNSILYSFNKFPDLKIILISLKAGGEGLNLQVANYVFLLD 1203 Query 62 PWWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQA 121 PWWNPA E+QA QRAHRIGQ + V +RFI DTIEER+ QLQEKKQLVFDGTVGASN A Sbjct 1204 PWWNPAVELQAFQRAHRIGQKKKVTALRFITKDTIEERMFQLQEKKQLVFDGTVGASNNA 1263 Query 122 MHKLTQEDLRFLFQS 136 ++KL +DL+FLFQ+ Sbjct 1264 LNKLNSDDLKFLFQN 1278 > pfa:PFL2440w DNA repair protein rhp16, putative; K15083 DNA repair protein RAD16 Length=1647 Score = 195 bits (496), Expect = 3e-50, Method: Composition-based stats. Identities = 86/134 (64%), Positives = 111/134 (82%), Gaps = 0/134 (0%) Query 3 VKREGIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDP 62 +K+ I C++L G M+ ++R+N+LY FN D L+V+LISLKAGGEGLNLQVA+RI+++DP Sbjct 1514 LKKHNIVCSKLLGYMSMISRNNILYNFNQDKQLRVLLISLKAGGEGLNLQVANRIFIVDP 1573 Query 63 WWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQAM 122 WWNPAAE+QAIQRAHRIGQT+ V +RFI +T+EE+I+QLQ KKQLVFD T+G S AM Sbjct 1574 WWNPAAELQAIQRAHRIGQTKTVYAIRFIIENTVEEKIIQLQNKKQLVFDSTIGDSGNAM 1633 Query 123 HKLTQEDLRFLFQS 136 KL++EDL FLF S Sbjct 1634 QKLSKEDLAFLFHS 1647 > bbo:BBOV_III008700 17.m10681; DNA repair protein rhp16; K15083 DNA repair protein RAD16 Length=1289 Score = 191 bits (486), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 85/133 (63%), Positives = 106/133 (79%), Gaps = 0/133 (0%) Query 2 RVKREGIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMD 61 R+K I CA L G+ +R N+L FN + +L+V+LISL AGGEGLNLQ+A+RI+LMD Sbjct 1155 RLKTANIECAVLVGNTKIESRRNILLEFNKNPSLRVMLISLNAGGEGLNLQIANRIFLMD 1214 Query 62 PWWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQA 121 PWWNPAAE+QAIQRAHRIGQT+PV +RFIC DTIEERI+ LQEKK ++FD T+ +S ++ Sbjct 1215 PWWNPAAELQAIQRAHRIGQTKPVYAIRFICKDTIEERIIALQEKKMILFDATICSSGES 1274 Query 122 MHKLTQEDLRFLF 134 M KLT EDL FLF Sbjct 1275 MKKLTSEDLSFLF 1287 > ath:AT1G05120 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein; K15083 DNA repair protein RAD16 Length=833 Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 76/130 (58%), Positives = 98/130 (75%), Gaps = 0/130 (0%) Query 7 GIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNP 66 G+ C QL GSMT AR + F D + +V L+SLKAGG LNL VAS +++MDPWWNP Sbjct 704 GVSCVQLVGSMTMAARDTAINKFKEDPDCRVFLMSLKAGGVALNLTVASHVFMMDPWWNP 763 Query 67 AAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQAMHKLT 126 A E QA R HRIGQ +P++ VRFI +T+EERIL+LQ+KK+LVF+GTVG S +A+ KLT Sbjct 764 AVERQAQDRIHRIGQYKPIRVVRFIIENTVEERILRLQKKKELVFEGTVGGSQEAIGKLT 823 Query 127 QEDLRFLFQS 136 +ED+RFLF + Sbjct 824 EEDMRFLFTT 833 > ath:AT1G02670 DNA repair protein, putative Length=678 Score = 140 bits (354), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 64/131 (48%), Positives = 92/131 (70%), Gaps = 1/131 (0%) Query 5 REGIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWW 64 + G+ C QL GSM+ A+ L F + + +V+L+SL+AGG LNL AS +++MDPWW Sbjct 547 KSGVSCVQLVGSMSKAAKDAALKNFKEEPDCRVLLMSLQAGGVALNLTAASHVFMMDPWW 606 Query 65 NPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQA-MH 123 NPA E QA R HRIGQ +PV+ VRFI T+EE+IL LQ+KK+ +F+ T+G S +A + Sbjct 607 NPAVERQAQDRIHRIGQCKPVRVVRFIMEKTVEEKILTLQKKKEDLFESTLGDSEEAVVQ 666 Query 124 KLTQEDLRFLF 134 KL ++D++ LF Sbjct 667 KLGEDDIKSLF 677 > sce:YBR114W RAD16, PSO5; Protein that recognizes and binds damaged DNA in an ATP-dependent manner (with Rad7p) during nucleotide excision repair; subunit of Nucleotide Excision Repair Factor 4 (NEF4) and the Elongin-Cullin-Socs (ECS) ligase complex (EC:3.6.1.-); K15083 DNA repair protein RAD16 Length=790 Score = 134 bits (337), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 63/135 (46%), Positives = 86/135 (63%), Gaps = 0/135 (0%) Query 2 RVKREGIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMD 61 R+KR G +L GSM+ R + F N+ +V L+SLKAGG LNL AS+++++D Sbjct 656 RLKRAGFQTVKLQGSMSPTQRDETIKYFMNNIQCEVFLVSLKAGGVALNLCEASQVFILD 715 Query 62 PWWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQA 121 PWWNP+ E Q+ R HRIGQ RPVK RF D+IE RI++LQEKK + T+ A Sbjct 716 PWWNPSVEWQSGDRVHRIGQYRPVKITRFCIEDSIEARIIELQEKKANMIHATINQDEAA 775 Query 122 MHKLTQEDLRFLFQS 136 + +LT DL+FLF + Sbjct 776 ISRLTPADLQFLFNN 790 > ath:AT3G20010 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein Length=1047 Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 60/135 (44%), Positives = 85/135 (62%), Gaps = 2/135 (1%) Query 2 RVKREGIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMD 61 R+ GI +L G+M+ AR + F+ ++KV+L+SLKAG GLN+ A + L+D Sbjct 911 RILESGIEFRRLDGTMSLAARDRAVKEFSKKPDVKVMLMSLKAGNLGLNMVAACHVILLD 970 Query 62 PWWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASN-- 119 WWNP E QAI RAHRIGQTRPV R DT+E+RIL+LQE+K+ + G + Sbjct 971 LWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILKLQEEKRTMVASAFGEEHGG 1030 Query 120 QAMHKLTQEDLRFLF 134 + +LT +DL++LF Sbjct 1031 SSATRLTVDDLKYLF 1045 > ath:AT1G11100 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related Length=1226 Score = 120 bits (301), Expect = 1e-27, Method: Composition-based stats. Identities = 61/138 (44%), Positives = 82/138 (59%), Gaps = 2/138 (1%) Query 1 ARVKREGIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLM 60 A +K GI + G MT AR + FN ++ V+++SLKA GLN+ A + ++ Sbjct 1089 AGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSLKAASLGLNMVAACHVIML 1148 Query 61 DPWWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQ 120 D WWNP E QAI RAHRIGQTRPVK VRF DT+E+RIL LQ+KK+ + G Sbjct 1149 DLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDRILALQQKKRKMVASAFGEHEN 1208 Query 121 AMHK--LTQEDLRFLFQS 136 + L+ EDL +LF + Sbjct 1209 GSRESHLSVEDLNYLFMA 1226 > ath:AT1G50410 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein Length=981 Score = 119 bits (297), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 57/125 (45%), Positives = 83/125 (66%), Gaps = 2/125 (1%) Query 12 QLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEMQ 71 +L G+M+ +AR + F+ND ++KV+++SLKAG GLN+ A + L+D WWNP E Q Sbjct 855 RLDGTMSLIARDRAVKEFSNDPDVKVMIMSLKAGNLGLNMIAACHVILLDLWWNPTTEDQ 914 Query 72 AIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASN--QAMHKLTQED 129 AI RAHRIGQTRPV R +T+E+RIL LQE+K+ + G + + +LT +D Sbjct 915 AIDRAHRIGQTRPVTVTRITIKNTVEDRILALQEEKRKMVASAFGEDHGGSSATRLTVDD 974 Query 130 LRFLF 134 L++LF Sbjct 975 LKYLF 979 > ath:AT5G43530 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein Length=1277 Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 59/133 (44%), Positives = 81/133 (60%), Gaps = 2/133 (1%) Query 3 VKREGIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDP 62 ++R G + G + R VL FN ++L+SLKAGG GLNL AS ++LMDP Sbjct 1147 LRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKTILLMSLKAGGVGLNLTAASSVFLMDP 1206 Query 63 WWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQAM 122 WWNPA E QAI R HRIGQ R V RFI DT+EER+ Q+Q +KQ + G + +++ + Sbjct 1207 WWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTVEERMQQVQARKQRMIAGAL--TDEEV 1264 Query 123 HKLTQEDLRFLFQ 135 E+L+ LF+ Sbjct 1265 RSARLEELKMLFR 1277 > ath:AT5G22750 RAD5; RAD5; ATP binding / ATP-dependent helicase/ DNA binding / helicase/ hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / protein binding / zinc ion binding Length=1029 Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 57/132 (43%), Positives = 83/132 (62%), Gaps = 2/132 (1%) Query 3 VKREGIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDP 62 + R +L G+++ R VL F+ D ++ V+L+SLKAGG G+NL AS ++MDP Sbjct 899 LSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSILVLLMSLKAGGVGINLTAASNAFVMDP 958 Query 63 WWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQAM 122 WWNPA E QA+ R HRIGQT+ VK RFI T+EER+ +Q +KQ + G + ++Q + Sbjct 959 WWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEERMEAVQARKQRMISGAL--TDQEV 1016 Query 123 HKLTQEDLRFLF 134 E+L+ LF Sbjct 1017 RSARIEELKMLF 1028 > ath:AT5G05130 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein Length=862 Score = 111 bits (277), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 59/131 (45%), Positives = 81/131 (61%), Gaps = 9/131 (6%) Query 3 VKREGIHCAQLTGSMTAVARSNVLYAFNND--TNLKVILISLKAGGEGLNLQVASRIYLM 60 +K G +L G+MT R+ V+ F N T V+L SLKA G G+NL ASR+YL Sbjct 726 LKAAGFTILRLDGAMTVKKRTQVIGEFGNPELTGPVVLLASLKASGTGINLTAASRVYLF 785 Query 61 DPWWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQ 120 DPWWNPA E QA+ R HRIGQ + VK +R I ++IEER+L+LQ+KK+ +N+ Sbjct 786 DPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIARNSIEERVLELQQKKK-------NLANE 838 Query 121 AMHKLTQEDLR 131 A + ++D R Sbjct 839 AFKRRQKKDER 849 > hsa:8458 TTF2, HuF2; transcription termination factor, RNA polymerase II Length=1162 Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 57/132 (43%), Positives = 85/132 (64%), Gaps = 0/132 (0%) Query 3 VKREGIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDP 62 +K+ G+ A + GS+ R +++ AFN+ +V+LISL AGG GLNL + ++L+D Sbjct 1029 LKKHGLTYATIDGSVNPKQRMDLVEAFNHSRGPQVMLISLLAGGVGLNLTGGNHLFLLDM 1088 Query 63 WWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQAM 122 WNP+ E QA R +R+GQ + V RF+C T+EE+ILQLQEKK+ + + S +++ Sbjct 1089 HWNPSLEDQACDRIYRVGQQKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSGESV 1148 Query 123 HKLTQEDLRFLF 134 KLT DLR LF Sbjct 1149 TKLTLADLRVLF 1160 > xla:735224 hltf, MGC131155, smarca3; helicase-like transcription factor; K15083 DNA repair protein RAD16 Length=999 Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 56/136 (41%), Positives = 84/136 (61%), Gaps = 5/136 (3%) Query 3 VKREGIHCAQLTGSMTAVARSNVLYAFN--NDTNLKVILISLKAGGEGLNLQVASRIYLM 60 ++ G +L GSMT R+ + +F + + ++L+SLKAGG GLNL ASR++LM Sbjct 861 LRESGFMFTRLDGSMTQKKRTEAIQSFQRPDAQSPTIMLLSLKAGGVGLNLTAASRVFLM 920 Query 61 DPWWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQ 120 DP WNPAAE Q R HR+GQT+ V +F+ D++EE +L++Q KK+ + G GA Sbjct 921 DPAWNPAAEEQCFDRCHRLGQTKEVIITKFVVRDSVEENMLKIQSKKRQLAAGAFGAKKS 980 Query 121 AMHKLTQ---EDLRFL 133 + ++ Q ED+R L Sbjct 981 SASQIKQARIEDIRTL 996 > sce:YLR032W RAD5, REV2, SNM2; DNA helicase proposed to promote replication fork regression during postreplication repair by template switching; RING finger containing ubiquitin ligase; stimulates the synthesis of free and PCNA-bound polyubiquitin chains by Ubc13p-Mms2p (EC:3.6.1.-); K01529 [EC:3.6.1.-] Length=1169 Score = 109 bits (272), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 55/126 (43%), Positives = 83/126 (65%), Gaps = 3/126 (2%) Query 12 QLTGSMTAVARSNVL--YAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNPAAE 69 + G ++ R++VL +A + + K++L+SLKAGG GLNL AS Y+MDPWW+P+ E Sbjct 1045 KFDGRLSLKERTSVLADFAVKDYSRQKILLLSLKAGGVGLNLTCASHAYMMDPWWSPSME 1104 Query 70 MQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQAMHKLTQED 129 QAI R HRIGQT VK +RFI D+IEE++L++QEKK+ + + + K E+ Sbjct 1105 DQAIDRLHRIGQTNSVKVMRFIIQDSIEEKMLRIQEKKRTIGEA-MDTDEDERRKRRIEE 1163 Query 130 LRFLFQ 135 ++ LF+ Sbjct 1164 IQMLFE 1169 > dre:564651 hltf; helicase-like transcription factor-like; K15083 DNA repair protein RAD16 Length=942 Score = 106 bits (264), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 54/136 (39%), Positives = 85/136 (62%), Gaps = 3/136 (2%) Query 3 VKREGIHCAQLTGSMTAVARSNVLYAFNNDT--NLKVILISLKAGGEGLNLQVASRIYLM 60 ++ G +L GS+ AR+ + F + T + ++L+SLKAGG GLNL AS++++M Sbjct 806 LREYGFSFTRLDGSLIQRARAKAIEDFQDSTPGSPTIMLLSLKAGGVGLNLTAASQVFVM 865 Query 61 DPWWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQ 120 DP WNPAAE Q + R HR+GQ+R V +FI D++EE ++++Q+KKQ + D G N Sbjct 866 DPAWNPAAEDQCVDRCHRLGQSRDVVITKFIVKDSVEENMVKIQKKKQELVDKAFGVKNS 925 Query 121 AMHKLTQ-EDLRFLFQ 135 K + +D+R L + Sbjct 926 QDAKQARIDDIRALME 941 > mmu:74044 Ttf2, 4632434F22Rik, 8030447N19, AV218430; transcription termination factor, RNA polymerase II Length=1138 Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 55/132 (41%), Positives = 82/132 (62%), Gaps = 0/132 (0%) Query 3 VKREGIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDP 62 +K+ + A + GS+ R +++ AFN+ +V+LISL AGG GLNL + ++L+D Sbjct 1005 LKKNRLTYATIDGSVNPKQRMDLVEAFNHSQGPQVMLISLLAGGVGLNLTGGNHLFLLDM 1064 Query 63 WWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQAM 122 WNP+ E QA R +R+GQ + V RF+C T+EE+ILQLQEKK+ + + S + Sbjct 1065 HWNPSLEDQACDRIYRVGQKKDVVIHRFVCEGTVEEKILQLQEKKKDLAKQVLSGSEGPV 1124 Query 123 HKLTQEDLRFLF 134 KLT DL+ LF Sbjct 1125 TKLTLADLKILF 1136 > bbo:BBOV_III002770 17.m07263; SNF2 family N-terminal domain containing protein Length=860 Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 52/115 (45%), Positives = 69/115 (60%), Gaps = 5/115 (4%) Query 7 GIHCAQL-----TGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMD 61 G+H QL G R++++ F ND N+ ++LIS KAGG GLNL VAS + LMD Sbjct 736 GLHKPQLEYLRLDGGHNPSTRTDIVERFTNDPNITLLLISTKAGGTGLNLTVASTVILMD 795 Query 62 PWWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVG 116 WNP + QA R+HRIGQT PV + +C DTIEE I + ++K L+ D G Sbjct 796 LDWNPHNDAQAENRSHRIGQTEPVDVYKLMCEDTIEEYIWECCQRKLLLDDAFSG 850 > pfa:MAL13P1.216 DNA helicase, putative Length=1446 Score = 99.4 bits (246), Expect = 3e-21, Method: Composition-based stats. Identities = 49/108 (45%), Positives = 65/108 (60%), Gaps = 8/108 (7%) Query 36 KVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDT 95 KV+L SLKAGG GLNL V+S++YLMD WWNPA E QA +R HRIGQ + V +F+ T Sbjct 1333 KVLLCSLKAGGVGLNLTVSSKVYLMDLWWNPAIEDQAFERVHRIGQLKEVNIYKFVLEKT 1392 Query 96 IEERILQLQEKKQLVFDGTVGAS--------NQAMHKLTQEDLRFLFQ 135 +EERILQ+ + KQ + + N KL +D +F+ Sbjct 1393 VEERILQIHQSKQYTANQILTQEGNKLNTEMNMVPQKLGMDDFILMFK 1440 > hsa:6596 HLTF, HIP116, HIP116A, HLTF1, RNF80, SMARCA3, SNF2L3, ZBU1; helicase-like transcription factor Length=1009 Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 52/127 (40%), Positives = 73/127 (57%), Gaps = 2/127 (1%) Query 3 VKREGIHCAQLTGSMTAVARSNVLYAFNNDT--NLKVILISLKAGGEGLNLQVASRIYLM 60 +K G +L GSM R + F N + ++L+SLKAGG GLNL ASR++LM Sbjct 871 LKASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSPTIMLLSLKAGGVGLNLSAASRVFLM 930 Query 61 DPWWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQ 120 DP WNPAAE Q R HR+GQ + V +FI D++EE +L++Q KK+ + G G Sbjct 931 DPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNKKRELAAGAFGTKKP 990 Query 121 AMHKLTQ 127 ++ Q Sbjct 991 NADEMKQ 997 > mmu:20585 Hltf, AF010600, BC057116, P113, Smarca3, Snf2l3; helicase-like transcription factor Length=1003 Score = 95.1 bits (235), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 51/127 (40%), Positives = 72/127 (56%), Gaps = 2/127 (1%) Query 3 VKREGIHCAQLTGSMTAVARSNVLYAFNNDT--NLKVILISLKAGGEGLNLQVASRIYLM 60 +K G +L GSM R + F N + ++L+SLKAGG GLNL ASR++LM Sbjct 865 LKASGFVFTRLDGSMAQKKRVESIQRFQNTEAGSPTIMLLSLKAGGVGLNLCAASRVFLM 924 Query 61 DPWWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQ 120 DP WNPAAE Q R HR+GQ + V +FI D++EE +L++Q K+ + G G Sbjct 925 DPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENMLKIQNTKRDLAAGAFGTKKT 984 Query 121 AMHKLTQ 127 + + Q Sbjct 985 DANDMKQ 991 > sce:YOR191W ULS1, DIS1, RIS1, TID4; RING finger protein involved in proteolytic control of sumoylated substrates; interacts with SUMO (Smt3p); member of the SWI/SNF family of DNA-dependent ATPases; plays a role in antagonizing silencing during mating-type switching (EC:3.6.1.-) Length=1619 Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 46/121 (38%), Positives = 75/121 (61%), Gaps = 1/121 (0%) Query 15 GSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEMQAIQ 74 GSM A RS+V+ F D +++LIS+KAG GL L A+ + ++DP+WNP E QA Sbjct 1494 GSMNAQRRSDVINEFYRDPEKRILLISMKAGNSGLTLTCANHVVIVDPFWNPYVEEQAQD 1553 Query 75 RAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASN-QAMHKLTQEDLRFL 133 R +RI QT+ V+ + D++E+RI +LQ++K+ + D + + ++ L + +L FL Sbjct 1554 RCYRISQTKKVQVHKLFIKDSVEDRISELQKRKKEMVDSAMDPGKIKEVNSLGRRELGFL 1613 Query 134 F 134 F Sbjct 1614 F 1614 > tgo:TGME49_118480 DNA repair protein, putative (EC:2.7.11.1) Length=1733 Score = 92.0 bits (227), Expect = 5e-19, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 55/77 (71%), Gaps = 0/77 (0%) Query 31 NDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEMQAIQRAHRIGQTRPVKGVRF 90 +D +++L SLKAG GLNL ASR YLMD WWNP E QA++R R GQ +PVK VRF Sbjct 1520 DDEEGRILLCSLKAGNVGLNLTRASRCYLMDGWWNPQVENQAMKRIWRFGQDKPVKVVRF 1579 Query 91 ICTDTIEERILQLQEKK 107 +C T+EER+ +++E K Sbjct 1580 VCVRTVEERLEEIKEFK 1596 > xla:431999 ttf2, MGC81081; transcription termination factor, RNA polymerase II Length=1187 Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 56/129 (43%), Positives = 80/129 (62%), Gaps = 1/129 (0%) Query 7 GIHCAQLTGSMTAVARSNVLYAFNNDTN-LKVILISLKAGGEGLNLQVASRIYLMDPWWN 65 G+ CA + GS+ R +++ FNN+ +V+L+SL AGG GLNL + ++LMD WN Sbjct 1057 GLSCATIDGSVNPKQRMDMVEDFNNNPKGPQVMLVSLCAGGVGLNLVGGNHLFLMDMHWN 1116 Query 66 PAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQAMHKL 125 PA E QA R +R+GQ + V RF+C T+EE+I QLQEKK+ + + ++ KL Sbjct 1117 PALEDQACDRIYRVGQQKDVVIHRFVCLGTVEEKISQLQEKKKDLAKKVLSGNSATFTKL 1176 Query 126 TQEDLRFLF 134 T DLR LF Sbjct 1177 TLADLRLLF 1185 > dre:565357 btaf1, TAFII, wu:fd60h10, wu:fe26c12; BTAF1 RNA polymerase II, B-TFIID transcription factor-associated Length=1858 Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 0/128 (0%) Query 7 GIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNP 66 G+ +L GS+ A R +++ FNND ++ V+L++ GG GLNL A + ++ WNP Sbjct 1678 GVTYLRLDGSVQAGLRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNP 1737 Query 67 AAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQAMHKLT 126 ++QA+ RAHRIGQ R V R I T+EE+I+ LQ+ K + + + N ++ + Sbjct 1738 MRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMTIANTVISQENASLQSMG 1797 Query 127 QEDLRFLF 134 E L LF Sbjct 1798 TEQLLNLF 1805 > ath:AT3G16600 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein Length=638 Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 45/97 (46%), Positives = 60/97 (61%), Gaps = 4/97 (4%) Query 27 YAFNNDTNLK----VILISLKAGGEGLNLQVASRIYLMDPWWNPAAEMQAIQRAHRIGQT 82 ++ N D ++ +L+SLKAG GLN+ AS + L+D WWNP E QAI RAHRIGQT Sbjct 495 HSTNKDNSISGLVCAMLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAIDRAHRIGQT 554 Query 83 RPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASN 119 R V R +T+EERIL L E+K+ + +G N Sbjct 555 RAVTVTRIAIKNTVEERILTLHERKRNIVASALGEKN 591 > cel:F53H4.1 csb-1; human CSB (Cockayne Syndrome B) homolog family member (csb-1); K10841 DNA excision repair protein ERCC-6 Length=957 Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 40/93 (43%), Positives = 60/93 (64%), Gaps = 0/93 (0%) Query 6 EGIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWN 65 +GI C LTG+ +A AR ++ F +D ++KV L++ +AGG GLNL A+++ + DP WN Sbjct 561 KGIKCVSLTGADSAAARPKIIKKFEDDVSIKVFLMTTRAGGLGLNLTCANKVIIFDPDWN 620 Query 66 PAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEE 98 P A+ QA R +R+GQT V R + TIE+ Sbjct 621 PQADNQAKNRIYRMGQTNDVAIYRLVSNGTIED 653 > ath:AT3G54280 RGD3; RGD3 (ROOT GROWTH DEFECTIVE 3); ATP binding / DNA binding / binding / helicase/ nucleic acid binding Length=2038 Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 47/125 (37%), Positives = 71/125 (56%), Gaps = 0/125 (0%) Query 12 QLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEMQ 71 +L GS+ R ++ AFN+D + V+L++ GG GLNL A + M+ WNP + Q Sbjct 1855 RLDGSVVPEKRFEIVKAFNSDPTIDVLLLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQ 1914 Query 72 AIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQAMHKLTQEDLR 131 A+ RAHR+GQ R V R I T+EE+++ LQ+ K V + + A N +M + + L Sbjct 1915 AMDRAHRLGQKRVVNVHRLIMRGTLEEKVMSLQKFKVSVANTVINAENASMKTMNTDQLL 1974 Query 132 FLFQS 136 LF S Sbjct 1975 DLFAS 1979 > xla:446222 hells, lsh, nbla10143, pasg, smarca6; helicase, lymphoid-specific Length=838 Score = 87.8 bits (216), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 48/135 (35%), Positives = 74/135 (54%), Gaps = 9/135 (6%) Query 11 AQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEM 70 +L GSM+ R + +FN D ++ + L+S +AGG G+NL A + + D WNP A++ Sbjct 646 CRLDGSMSYTDREENMRSFNTDPDVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQADL 705 Query 71 QAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLV---------FDGTVGASNQA 121 QA R HRIGQTRPV R + +TI+++I++ K+ + F G NQ+ Sbjct 706 QAQDRCHRIGQTRPVVVYRLVTANTIDQKIVERAAAKRKLEKLVIHKNKFKGGQTGINQS 765 Query 122 MHKLTQEDLRFLFQS 136 L ++L L QS Sbjct 766 KSCLDPQELLELLQS 780 > cel:F15D4.1 btf-1; BTAF (TBP-associated factor) homolog family member (btf-1) Length=1649 Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 45/122 (36%), Positives = 68/122 (55%), Gaps = 0/122 (0%) Query 13 LTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEMQA 72 L GS+ A R ++ FN D + V++++ GG GLNL A + +D WNP ++QA Sbjct 1474 LDGSVPAGDRMKMVNRFNEDKTIDVLILTTHVGGVGLNLTGADTVIFLDHDWNPMKDLQA 1533 Query 73 IQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQAMHKLTQEDLRF 132 I RAHR+GQTR V R I T+EE+++ L + K +GA N +M + +L Sbjct 1534 IDRAHRLGQTRNVNVYRLITQGTVEEKVMSLAKFKLNTAQALIGADNTSMMTMETGELMN 1593 Query 133 LF 134 +F Sbjct 1594 MF 1595 > mmu:623474 Rad54b, E130016E03Rik, Fsbp, MGC67261; RAD54 homolog B (S. cerevisiae); K10877 DNA repair and recombination protein RAD54B [EC:3.6.4.-] Length=886 Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 53/134 (39%), Positives = 74/134 (55%), Gaps = 2/134 (1%) Query 3 VKREGIHCAQLTGSMTAVARSNVLYAFNNDTNLKVI-LISLKAGGEGLNLQVASRIYLMD 61 KR G CA+L G R +++ +FN+ + I L+S KAGG GLNL S + L D Sbjct 658 CKRHGYACARLDGQTPVSQRQHIVDSFNSKYSTDFIFLLSSKAGGVGLNLIGGSHLILYD 717 Query 62 PWWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQA 121 WNPA ++QA+ R R GQ PV R + T TIEE+I Q Q KQ + V + + Sbjct 718 IDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAVVDLTRSS 777 Query 122 MH-KLTQEDLRFLF 134 H + + E+L+ LF Sbjct 778 EHIQFSVEELKNLF 791 > sce:YGL163C RAD54, XRS1; DNA-dependent ATPase, stimulates strand exchange by modifying the topology of double-stranded DNA; involved in the recombinational repair of double-strand breaks in DNA during vegetative growth and meiosis; member of the SWI/SNF family (EC:3.6.1.-); K10875 DNA repair and recombination protein RAD54 and RAD54-like protein [EC:3.6.4.-] Length=898 Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 52/125 (41%), Positives = 71/125 (56%), Gaps = 1/125 (0%) Query 12 QLTGSMTAVARSNVLYAFNNDTNLKVI-LISLKAGGEGLNLQVASRIYLMDPWWNPAAEM 70 +L G+M+ R ++ FN+ + I L+S KAGG G+NL A+R+ LMDP WNPAA+ Sbjct 701 RLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGINLIGANRLILMDPDWNPAADQ 760 Query 71 QAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQAMHKLTQEDL 130 QA+ R R GQ + RFI T TIEE+I Q Q K + V A + ++L Sbjct 761 QALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDAKEDVERLFSSDNL 820 Query 131 RFLFQ 135 R LFQ Sbjct 821 RQLFQ 825 > mmu:15201 Hells, AI323785, E130115I21Rik, LSH, Lysh, PASG, YFK8; helicase, lymphoid specific Length=821 Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 37/92 (40%), Positives = 61/92 (66%), Gaps = 0/92 (0%) Query 11 AQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEM 70 ++L GSM+ R +Y+FN D ++ + L+S +AGG G+NL A + + D WNP +++ Sbjct 626 SRLDGSMSYSEREKNIYSFNTDPDVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDL 685 Query 71 QAIQRAHRIGQTRPVKGVRFICTDTIEERILQ 102 QA R HRIGQT+PV R + +TI+++I++ Sbjct 686 QAQDRCHRIGQTKPVVVYRLVTANTIDQKIVE 717 > pfa:MAL8P1.65 DNA helicase, putative Length=1221 Score = 86.7 bits (213), Expect = 2e-17, Method: Composition-based stats. Identities = 46/112 (41%), Positives = 63/112 (56%), Gaps = 1/112 (0%) Query 12 QLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEMQ 71 +L GS + R ++ F+ D N+ V L+S KAGG GLNL A+ + LMD WNP + Q Sbjct 1100 RLDGSTNTIERQKIIKRFSKDENIFVFLLSTKAGGVGLNLIAANHVILMDQDWNPHNDRQ 1159 Query 72 AIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQAMH 123 A R HR+GQ V R C +TIEE IL+ K +L D G +N+ + Sbjct 1160 AEDRVHRLGQKNEVFIYRLCCKNTIEEAILKCN-KAKLHLDQAFGGNNELLQ 1210 > hsa:9044 BTAF1, KIAA0940, MGC138406, MOT1, TAF(II)170, TAF172, TAFII170; BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae) Length=1849 Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 71/123 (57%), Gaps = 0/123 (0%) Query 12 QLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEMQ 71 +L GS+ R +++ FNND ++ V+L++ GG GLNL A + ++ WNP ++Q Sbjct 1676 RLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQ 1735 Query 72 AIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQAMHKLTQEDLR 131 A+ RAHRIGQ R V R I T+EE+I+ LQ+ K + + + N ++ + + L Sbjct 1736 AMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLL 1795 Query 132 FLF 134 LF Sbjct 1796 DLF 1798 > mmu:107182 Btaf1, AI414500, AI447930, E430027O22Rik, TAF170; BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, (Mot1 homolog, S. cerevisiae) Length=1848 Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 44/123 (35%), Positives = 71/123 (57%), Gaps = 0/123 (0%) Query 12 QLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEMQ 71 +L GS+ R +++ FNND ++ V+L++ GG GLNL A + ++ WNP ++Q Sbjct 1675 RLDGSIPPGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQ 1734 Query 72 AIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQAMHKLTQEDLR 131 A+ RAHRIGQ R V R I T+EE+I+ LQ+ K + + + N ++ + + L Sbjct 1735 AMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLL 1794 Query 132 FLF 134 LF Sbjct 1795 DLF 1797 > sce:YIL126W STH1, NPS1; ATPase component of the RSC chromatin remodeling complex; required for expression of early meiotic genes; essential helicase-related protein homologous to Snf2p (EC:3.6.1.-); K11786 ATP-dependent helicase STH1/SNF2 [EC:3.6.4.-] Length=1359 Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 54/130 (41%), Positives = 76/130 (58%), Gaps = 6/130 (4%) Query 12 QLTGSMTAVARSNVLYAFN-NDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEM 70 +L GS R+ +L AFN D++ L+S +AGG GLNLQ A + + D WNP ++ Sbjct 836 RLDGSTKTEERTEMLNAFNAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDL 895 Query 71 QAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQAMHKLTQED- 129 QA RAHRIGQ V+ +R I TD++EE IL+ +K L DG V + + +K T E+ Sbjct 896 QAQDRAHRIGQKNEVRILRLITTDSVEEVILERAMQK-LDIDGKVIQAGKFDNKSTAEEQ 954 Query 130 ---LRFLFQS 136 LR L +S Sbjct 955 EAFLRRLIES 964 > dre:553328 hells, cb65, im:6911667, pasg, sb:cb65, sb:cb749; helicase, lymphoid-specific Length=853 Score = 85.9 bits (211), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 40/96 (41%), Positives = 60/96 (62%), Gaps = 0/96 (0%) Query 7 GIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNP 66 G ++L GSM+ R + F++D + + L+S +AGG G+NL A + + D WNP Sbjct 655 GYEYSRLDGSMSYADRDENMKKFSSDPEVFLFLLSTRAGGLGINLTSADTVIIFDSDWNP 714 Query 67 AAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQ 102 A++QA R HRIGQT+PV R I +TI+E+IL+ Sbjct 715 QADLQAQDRCHRIGQTKPVVVHRLITANTIDEKILE 750 > dre:559803 novel protein similar to SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 (smarca5); K11727 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 1 [EC:3.6.4.-] Length=1036 Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/110 (42%), Positives = 64/110 (58%), Gaps = 2/110 (1%) Query 7 GIHCAQLTGSMTAVARSNVLYAFNNDTNLKVI-LISLKAGGEGLNLQVASRIYLMDPWWN 65 G +L G+ AR + AFN + K I ++S +AGG G+NL A + L D WN Sbjct 485 GFEYCRLDGNTPHEAREQAIDAFNAPNSSKFIFMLSTRAGGLGINLATADVVILYDSDWN 544 Query 66 PAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTV 115 P ++QA+ RAHRIGQ +PVK R I +T+EERI++ E K L D V Sbjct 545 PQVDLQAMDRAHRIGQRKPVKVFRLITDNTVEERIVERAEMK-LRLDSIV 593 > cel:F59A7.8 hypothetical protein Length=518 Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 53/134 (39%), Positives = 79/134 (58%), Gaps = 5/134 (3%) Query 5 REGIH-CAQLTGSMTAVARSNVLYAFNNDTN-LKVILISLKAGGEGLNLQVASRIYLMDP 62 +EG H +TG + R + +FN + + +L+SL AGG GLNL + + ++D Sbjct 376 QEGGHGYTSITGEVAIKDRQERVDSFNQEKGGAQDMLLSLTAGGVGLNLIGGNHLIMVDL 435 Query 63 WWNPAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTV--GASNQ 120 WNPA E QA R +R+GQ + V R I +TIE+R++ LQEKK L +V G++ + Sbjct 436 HWNPALEQQACDRIYRMGQKKEVHIHRLIVKETIEQRVMSLQEKK-LALAASVLEGSATR 494 Query 121 AMHKLTQEDLRFLF 134 M+KLT D+R LF Sbjct 495 GMNKLTNSDIRTLF 508 > mmu:76251 0610007P08Rik, 1700019D06Rik, 9330134C04Rik, MGC100170, Rad26l, Sr278; RIKEN cDNA 0610007P08 gene Length=699 Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 45/113 (39%), Positives = 66/113 (58%), Gaps = 0/113 (0%) Query 7 GIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNP 66 G+ +L GS + R ++ FN+ ++ + L+S AGG GLN A+ + L DP WNP Sbjct 546 GLDYRRLDGSTKSEERLKIVKEFNSSQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNP 605 Query 67 AAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASN 119 A ++QA+ RA+RIGQ R VK +R I T+EE + Q KQ + VG+ N Sbjct 606 ANDLQAVDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHCVVVGSEN 658 > dre:566768 si:ch211-244p18.3; K11665 DNA helicase INO80 [EC:3.6.4.12] Length=1552 Score = 85.5 bits (210), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 42/96 (43%), Positives = 59/96 (61%), Gaps = 0/96 (0%) Query 12 QLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEMQ 71 +L GS R +++ F + T++ V L+S +AGG G+NL A + D WNP + Q Sbjct 1144 RLDGSSKISERRDMVADFQSRTDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQ 1203 Query 72 AIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKK 107 A+ RAHR+GQT+ V R IC TIEERILQ ++K Sbjct 1204 AMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEK 1239 > hsa:54617 INO80, INO80A, INOC1, hINO80; INO80 homolog (S. cerevisiae) (EC:3.6.4.12); K11665 DNA helicase INO80 [EC:3.6.4.12] Length=1556 Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 42/96 (43%), Positives = 58/96 (60%), Gaps = 0/96 (0%) Query 12 QLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEMQ 71 +L GS R +++ F N ++ V L+S +AGG G+NL A + D WNP + Q Sbjct 1146 RLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQ 1205 Query 72 AIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKK 107 A+ RAHR+GQT+ V R IC TIEERILQ ++K Sbjct 1206 AMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEK 1241 > hsa:375748 C9orf102, FLJ37706, MGC30192, MGC43364, RAD26L, SR278; chromosome 9 open reading frame 102 Length=712 Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 0/113 (0%) Query 7 GIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNP 66 G+ +L GS + R ++ FN+ ++ + L+S AGG GLN A+ + L DP WNP Sbjct 559 GLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNP 618 Query 67 AAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASN 119 A ++QAI RA+RIGQ R VK +R I T+EE + Q KQ + VG+ N Sbjct 619 ANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQIYKQQLHCVVVGSEN 671 > hsa:3070 HELLS, FLJ10339, LSH, PASG, SMARCA6; helicase, lymphoid-specific Length=838 Score = 85.1 bits (209), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 36/92 (39%), Positives = 60/92 (65%), Gaps = 0/92 (0%) Query 11 AQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEM 70 ++L GSM+ R +++FN D + + L+S +AGG G+NL A + + D WNP +++ Sbjct 643 SRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDL 702 Query 71 QAIQRAHRIGQTRPVKGVRFICTDTIEERILQ 102 QA R HRIGQT+PV R + +TI+++I++ Sbjct 703 QAQDRCHRIGQTKPVVVYRLVTANTIDQKIVE 734 > cpv:cgd1_1330 SWI/SNF-related, matrix associated, actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 Length=807 Score = 84.7 bits (208), Expect = 8e-17, Method: Composition-based stats. Identities = 46/109 (42%), Positives = 63/109 (57%), Gaps = 2/109 (1%) Query 12 QLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEMQ 71 +L G+ + R N++ F T + + L+S KA G+GLNL VAS + +MD +NP E Q Sbjct 698 RLDGTTPILERQNMIEKFQT-TQVPLFLLSTKAAGQGLNLTVASSVIMMDLDYNPQIEKQ 756 Query 72 AIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQ 120 A R HRIGQ++ VK + +C DTIEE I + K L D G NQ Sbjct 757 AEDRVHRIGQSKQVKIFKLVCKDTIEENIFNCCQSK-LTLDNAFGGRNQ 804 > ath:AT3G57300 INO80; INO80 (INO80 ORTHOLOG); ATP binding / DNA binding / helicase/ nucleic acid binding; K11665 DNA helicase INO80 [EC:3.6.4.12] Length=1507 Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 42/106 (39%), Positives = 65/106 (61%), Gaps = 4/106 (3%) Query 12 QLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNPAAEMQ 71 +L GS T + R +++ F + +++ V L+S +AGG G+NL A + + WNP ++Q Sbjct 1251 RLDGSSTIMDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDLQ 1310 Query 72 AIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKK----QLVFDG 113 A+ RAHR+GQT+ V R IC +T+EE+IL +K QLV G Sbjct 1311 AMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKNTVQQLVMTG 1356 > tgo:TGME49_005400 DNA repair protein RAD54, putative (EC:2.7.11.1) Length=693 Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 51/126 (40%), Positives = 67/126 (53%), Gaps = 1/126 (0%) Query 6 EGIHCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWN 65 +G +L GS R+ ++ FN L+S KAGG GLNL A+R+ L+DP WN Sbjct 561 KGYSFLRLDGSTAVKDRTGLVKTFNESKECFAFLLSSKAGGVGLNLIGANRLVLLDPDWN 620 Query 66 PAAEMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQE-KKQLVFDGTVGASNQAMHK 124 PA + QA+ R R GQ PV R + TIEE+ILQ Q K L G VG+ Q H Sbjct 621 PANDQQALARVWRPGQINPVYIYRLVGARTIEEKILQRQAYKATLAQVGVVGSDFQMAHI 680 Query 125 LTQEDL 130 + +L Sbjct 681 ILGRNL 686 > sce:YBR073W RDH54, TID1; DNA-dependent ATPase, stimulates strand exchange by modifying the topology of double-stranded DNA; involved in recombinational repair of DNA double-strand breaks during mitosis and meiosis; proposed to be involved in crossover interference (EC:5.99.-.- 3.6.1.-); K10877 DNA repair and recombination protein RAD54B [EC:3.6.4.-] Length=958 Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 46/122 (37%), Positives = 70/122 (57%), Gaps = 1/122 (0%) Query 9 HCAQLTGSMTAVARSNVLYAFNNDTNLKVILISLKAGGEGLNLQVASRIYLMDPWWNPAA 68 HC +L GS+ A R +++ +FN + + L+S K+GG GLNL SR+ L D WNP+ Sbjct 708 HC-RLDGSIPAKQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNLVGRSRLILFDNDWNPSV 766 Query 69 EMQAIQRAHRIGQTRPVKGVRFICTDTIEERILQLQEKKQLVFDGTVGASNQAMHKLTQE 128 ++QA+ R HR GQ +P R + T I+E+ILQ Q K + +G S + + + Sbjct 767 DLQAMSRIHRDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNKESSND 826 Query 129 DL 130 DL Sbjct 827 DL 828 Lambda K H 0.322 0.134 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2362384368 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40