bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_0643_orf1
Length=165
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_023860 RNA-binding protein, putative ; K14789 nucle... 99.0 6e-21
mmu:22384 Eif4h, AU018978, D5Ertd355e, E430026L18Rik, Ef4h, Wb... 63.9 2e-10
hsa:7458 EIF4H, KIAA0038, WBSCR1, WSCR1; eukaryotic translatio... 63.9 2e-10
xla:447037 eif4h, MGC82967, wbscr1; eukaryotic translation ini... 62.4 7e-10
xla:398961 hypothetical protein MGC68480 60.8 2e-09
dre:402996 eif4h, MGC77282, wbscr1, zgc:77282; eukaryotic tran... 60.5 3e-09
dre:100331686 eukaryotic translation initiation factor 4H-like 60.5 3e-09
ath:AT1G48920 ATNUC-L1; nucleic acid binding / nucleotide bind... 56.6 4e-08
dre:436655 rbm34, zgc:92062; RNA binding motif protein 34; K14... 56.2 4e-08
cel:F56A8.6 cpf-2; Cleavage and Polyadenylation Factor family ... 56.2 5e-08
xla:444235 rbm23, MGC80803; RNA binding motif protein 23 53.9
xla:443584 rbm34, MGC115058; RNA binding motif protein 34; K14... 53.1 4e-07
dre:386806 cstf2, CstF-64, fb11e07, wu:fb11e07, zgc:56346, zgc... 52.4 6e-07
cel:F11A10.7 hypothetical protein; K14837 nucleolar protein 12 51.2
ath:AT5G50250 31 kDa ribonucleoprotein, chloroplast, putative ... 50.1 3e-06
dre:368358 sb:cb657 49.3 6e-06
tpv:TP03_0088 hypothetical protein; K14396 polyadenylate-bindi... 49.3 7e-06
xla:379871 cstf2, MGC53575, MGC83019, cstf-64; cleavage stimul... 48.9 9e-06
ath:AT5G61030 GR-RBP3 (glycine-rich RNA-binding protein 3); AT... 48.5 1e-05
mmu:83410 Cstf2t, 64kDa, C77975, tCstF-64, tauCstF-64; cleavag... 48.1 1e-05
hsa:23283 CSTF2T, CstF-64T, DKFZp434C1013, KIAA0689; cleavage ... 47.8 2e-05
sce:YOL123W HRP1, NAB4, NAB5; Hrp1p; K14411 RNA-binding protei... 47.8 2e-05
sce:YIR001C SGN1, RBP1, RBP29; Cytoplasmic RNA-binding protein... 47.8 2e-05
mmu:108062 Cstf2, 64kDa, C630034J23Rik, Cstf64; cleavage stimu... 47.8 2e-05
cel:R09B3.3 hypothetical protein 47.4 2e-05
hsa:1478 CSTF2, CstF-64; cleavage stimulation factor, 3' pre-R... 47.4 2e-05
ath:AT3G18610 ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1); nuc... 47.4 2e-05
pfa:MAL13P1.120 splicing factor, putative; K13091 RNA-binding ... 47.4 2e-05
ath:AT1G71800 cleavage stimulation factor, putative; K14407 cl... 47.4 2e-05
sce:YDL213C NOP6; Nop6p; K14789 nucleolar protein 6 47.0
ath:AT1G74230 GR-RBP5 (glycine-rich RNA-binding protein 5); AT... 47.0 3e-05
mmu:52202 Rbm34, 4930547K05Rik, 6330444B11, D8Ertd233e; RNA bi... 47.0 3e-05
hsa:390748 PABPN1L, PABPNL1, ePABP2; poly(A) binding protein, ... 46.2 5e-05
bbo:BBOV_IV003970 23.m05815; RNA recognition motif containing ... 45.8 7e-05
ath:AT3G14100 oligouridylate-binding protein, putative 45.4 8e-05
ath:AT1G60000 29 kDa ribonucleoprotein, chloroplast, putative ... 45.4 9e-05
ath:AT4G14300 heterogeneous nuclear ribonucleoprotein, putativ... 45.4 9e-05
ath:AT5G09880 RNA recognition motif (RRM)-containing protein; ... 45.4 9e-05
hsa:55147 RBM23, CAPERbeta, FLJ10482, MGC4458, RNPC4; RNA bind... 45.4 9e-05
cel:R09B3.2 hypothetical protein 45.4 9e-05
hsa:7073 TIAL1, MGC33401, TCBP, TIAR; TIA1 cytotoxic granule-a... 45.4 9e-05
mmu:21843 Tial1, 5330433G13Rik, AL033329, TIAR, mTIAR; Tia1 cy... 45.1 1e-04
ath:AT4G24770 RBP31; RBP31 (31-KDA RNA BINDING PROTEIN); RNA b... 45.1 1e-04
hsa:9584 RBM39, CAPER, CAPERalpha, CC1.3, DKFZp781C0423, FLJ44... 45.1 1e-04
cpv:cgd4_3410 RNA binding protein 45.1 1e-04
mmu:170791 Rbm39, 1500012C14Rik, 2310040E03Rik, B330012G18Rik,... 45.1 1e-04
xla:397919 ncl; nucleolin; K11294 nucleolin 44.7 1e-04
sce:YNL004W HRB1, TOM34; Hrb1p 44.7 1e-04
ath:AT4G16280 FCA; FCA; RNA binding 44.7 1e-04
cpv:cgd6_410 Sgn1p-like RRM domain containing protein ; K14396... 44.7 2e-04
> tgo:TGME49_023860 RNA-binding protein, putative ; K14789 nucleolar
protein 6
Length=247
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 46/81 (56%), Positives = 57/81 (70%), Gaps = 0/81 (0%)
Query 81 LVLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIA 140
+LF GNLPL A+++K FF KLQ I +VR+LT ++T KGC FVEF KEAL+IA
Sbjct 163 FILFAGNLPLDTKAEDLKAFFKNKLQPRIVEVRMLTHRETNKPKGCAFVEFDCKEALEIA 222
Query 141 LNYDGRTLSDRKIRVELTAGG 161
LNY R L RKI +EL+AGG
Sbjct 223 LNYHHRELGGRKINIELSAGG 243
> mmu:22384 Eif4h, AU018978, D5Ertd355e, E430026L18Rik, Ef4h,
Wbscr1, Wscr1, mKIAA0038; eukaryotic translation initiation
factor 4H
Length=248
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query 76 TSKVPLVLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKE 135
++ P +VGNLP + ++ F L I+ VRL+ +KDT KG +VEF +
Sbjct 37 PTEPPYTAYVGNLPFNTVQGDIDAIF---KDLSIRSVRLVRDKDTDKFKGFCYVEFDEVD 93
Query 136 ALQIALNYDGRTLSDRKIRVELTAG 160
+L+ AL YDG L DR +RV++ G
Sbjct 94 SLKEALTYDGALLGDRSLRVDIAEG 118
> hsa:7458 EIF4H, KIAA0038, WBSCR1, WSCR1; eukaryotic translation
initiation factor 4H
Length=248
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query 76 TSKVPLVLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKE 135
++ P +VGNLP + ++ F L I+ VRL+ +KDT KG +VEF +
Sbjct 37 PTEPPYTAYVGNLPFNTVQGDIDAIF---KDLSIRSVRLVRDKDTDKFKGFCYVEFDEVD 93
Query 136 ALQIALNYDGRTLSDRKIRVELTAG 160
+L+ AL YDG L DR +RV++ G
Sbjct 94 SLKEALTYDGALLGDRSLRVDIAEG 118
> xla:447037 eif4h, MGC82967, wbscr1; eukaryotic translation initiation
factor 4H
Length=250
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query 76 TSKVPLVLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKE 135
+ P +VGNLP + ++ F L ++ VRL+ +K+T KG +VEF + E
Sbjct 37 PTDPPFTAYVGNLPFNTVQGDIDNIF---KDLSVRSVRLVRDKETDKFKGFCYVEFDDLE 93
Query 136 ALQIALNYDGRTLSDRKIRVELTAG 160
+L+ AL YDG DR IRV++ G
Sbjct 94 SLKEALTYDGAIFIDRAIRVDIAEG 118
> xla:398961 hypothetical protein MGC68480
Length=250
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query 76 TSKVPLVLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKE 135
++ P +VGNLP + ++ F L ++ VRL+ +K+T KG +VEF + E
Sbjct 37 PTEPPFTAYVGNLPFNTVQGDIDNIF---KDLSVRSVRLVRDKETDKFKGFCYVEFDDLE 93
Query 136 ALQIALNYDGRTLSDRKIRVELTAG 160
+L+ AL +DG DR IRV++ G
Sbjct 94 SLKEALTFDGAIFIDRAIRVDIAEG 118
> dre:402996 eif4h, MGC77282, wbscr1, zgc:77282; eukaryotic translation
initiation factor 4h
Length=262
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query 76 TSKVPLVLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKE 135
++ P +VGNLP + ++ F L ++ VRL+ +K+T KG +VEF + E
Sbjct 39 PTEPPYTAYVGNLPFNTVQGDIDAIF---RDLSVRSVRLVRDKETDKFKGFCYVEFDDLE 95
Query 136 ALQIALNYDGRTLSDRKIRVELT 158
+L+ AL YDG L DR +RV++
Sbjct 96 SLKEALTYDGALLGDRSLRVDIA 118
> dre:100331686 eukaryotic translation initiation factor 4H-like
Length=262
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query 76 TSKVPLVLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKE 135
++ P +VGNLP + ++ F L ++ VRL+ +K+T KG +VEF + E
Sbjct 39 PTEPPYTAYVGNLPFNTVQGDIDAIF---RDLSVRSVRLVRDKETDKFKGFCYVEFDDLE 95
Query 136 ALQIALNYDGRTLSDRKIRVELT 158
+L+ AL YDG L DR +RV++
Sbjct 96 SLKEALTYDGALLGDRSLRVDIA 118
> ath:AT1G48920 ATNUC-L1; nucleic acid binding / nucleotide binding;
K11294 nucleolin
Length=557
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query 65 ESEHSSDANDKTSKVPLV-----LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKD 119
++E SS KT P LF NL ++ +V+ FF ++ DVR T +D
Sbjct 276 DAEKSSAKQPKTPSTPAAGGSKTLFAANLSFNIERADVENFFKEAGEVV--DVRFSTNRD 333
Query 120 TGASKGCGFVEFTNKEALQIALNYDGRTLSDRKIRVELT 158
G+ +G G VEF + E Q AL + GR L R+IR+++
Sbjct 334 DGSFRGFGHVEFASSEEAQKALEFHGRPLLGREIRLDIA 372
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Query 83 LFVGNLPLSVSAQEVK----EFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQ 138
+FV S+S ++K E F + IK+V + ++DTG SKG ++EF+ E +
Sbjct 403 IFVKGFDASLSEDDIKNTLREHFSSCGE--IKNVSVPIDRDTGNSKGIAYLEFS--EGKE 458
Query 139 IALNYDGRTL 148
AL +G +
Sbjct 459 KALELNGSDM 468
> dre:436655 rbm34, zgc:92062; RNA binding motif protein 34; K14837
nucleolar protein 12
Length=411
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 2/73 (2%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIALN 142
+FVGNLP +S ++ F I+ VRL+ ++D+G KG G+V F + +++ +AL
Sbjct 254 IFVGNLPYDISELPLQNHFQECGN--IEAVRLVRDRDSGMGKGFGYVLFESPDSVMLALK 311
Query 143 YDGRTLSDRKIRV 155
+G TL RKIRV
Sbjct 312 LNGSTLQQRKIRV 324
> cel:F56A8.6 cpf-2; Cleavage and Polyadenylation Factor family
member (cpf-2); K14407 cleavage stimulation factor subunit
2
Length=336
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query 69 SSDANDKTSKVPLVLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGF 128
S ND++ + +FVGN+ VS ++ F + + ++++ +++TG KG GF
Sbjct 9 SGVGNDRSQRS---VFVGNISYDVSEDTIRSIFSKAGNVL--SIKMVHDRETGKPKGYGF 63
Query 129 VEFTNKEALQIAL-NYDGRTLSDRKIRVELTAGG 161
+EF + + ++A+ N +G LS R +RV+ AGG
Sbjct 64 IEFPDIQTAEVAIRNLNGYELSGRILRVDSAAGG 97
> xla:444235 rbm23, MGC80803; RNA binding motif protein 23
Length=416
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 9/90 (10%)
Query 80 PLVLFVGNLPLSVSAQEVK---EFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEA 136
P+ L+VG+L +++ + ++ E FG+ I++++LL E DTG SKG GF+ FT+ E
Sbjct 249 PMRLYVGSLHFNITEEMLRGIFEPFGK-----IENIQLLKEPDTGRSKGFGFITFTDAEC 303
Query 137 LQIALN-YDGRTLSDRKIRVELTAGGGGKS 165
+ AL +G L+ + ++V GGG S
Sbjct 304 ARRALEQLNGFELAGKPMKVGHVTGGGDAS 333
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query 82 VLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIAL 141
+F L + ++++++FF + ++DV++++++++ SKG +VEF ++ +A+
Sbjct 154 TVFCMQLAARIRSRDLEDFFSAVGK--VRDVKIISDRNSRRSKGIAYVEFCEIHSVPLAI 211
Query 142 NYDGRTLSDRKIRVE 156
G+ L I V+
Sbjct 212 GLTGQRLLGVPIIVQ 226
> xla:443584 rbm34, MGC115058; RNA binding motif protein 34; K14837
nucleolar protein 12
Length=414
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query 84 FVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIALNY 143
FVGNLP + + +++ F + ++ VR++ ++ TG KG G+V F + +A+Q+AL
Sbjct 276 FVGNLPYDIEEESIRKHFSQCGD--VQGVRIIRDQKTGIGKGFGYVLFESADAVQLALKL 333
Query 144 DGRTLSDRKIRVE--LTAGGGGKS 165
+ LS R+IRV+ +TA KS
Sbjct 334 NNSQLSGRRIRVKRSVTAEAAQKS 357
> dre:386806 cstf2, CstF-64, fb11e07, wu:fb11e07, zgc:56346, zgc:77730;
cleavage stimulation factor, 3' pre-RNA, subunit 2;
K14407 cleavage stimulation factor subunit 2
Length=488
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKE-ALQIAL 141
+FVGN+P + +++K+ F ++ L + RL+ +++TG KG GF E+ ++E AL
Sbjct 26 VFVGNIPYEATEEQLKDIF-SEVGLVVS-FRLVYDRETGKPKGYGFCEYQDQETALSAMR 83
Query 142 NYDGRTLSDRKIRVELTA 159
N +GR S R +RV+ A
Sbjct 84 NLNGREFSGRALRVDNAA 101
> cel:F11A10.7 hypothetical protein; K14837 nucleolar protein
12
Length=394
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query 81 LVLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIA 140
+ +FVGNLP ++ + FF ++ ++ VR++ +KDTG KG FV F ++ +A
Sbjct 246 MAIFVGNLPFEITEDALITFFSAQIGP-VEAVRIVRDKDTGKGKGFAFVNFKQDSSVSLA 304
Query 141 LNYDGRTLSDRKIRV 155
L+ + + R +R+
Sbjct 305 LSMETIKMEKRDLRI 319
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 64/129 (49%), Gaps = 16/129 (12%)
Query 43 GQQLRDSQQDQLQRKKLHQTEKESEHSSDANDKTSKVPLVLFVGNLPLSVSAQEVKEFFG 102
G++ +D ++ +R + Q E + S+A ++ L +FVGN+PL+++ + V+ F
Sbjct 106 GEEKKDENKEG-KRDRTKQRENRTLQKSNARASAAENALTVFVGNMPLTMNEKSVRRIFS 164
Query 103 ----------RKL----QLFIKDVRLLTEK-DTGASKGCGFVEFTNKEALQIALNYDGRT 147
R L + K V LT K + S +V+F +E+++ AL Y+G
Sbjct 165 DFGTISSVRMRNLLPANEKLTKRVTHLTGKLNDKQSSLTFYVKFGAEESVEKALKYNGTK 224
Query 148 LSDRKIRVE 156
L D IRV+
Sbjct 225 LDDHVIRVD 233
> ath:AT5G50250 31 kDa ribonucleoprotein, chloroplast, putative
/ RNA-binding protein RNP-T, putative / RNA-binding protein
1/2/3, putative / RNA-binding protein cp31, putative
Length=289
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIAL- 141
++VGNLP V + ++ F + + D R++++++TG S+G GFV+ +N+ + +A+
Sbjct 209 IYVGNLPWDVDSGRLERLFSEHGK--VVDARVVSDRETGRSRGFGFVQMSNENEVNVAIA 266
Query 142 NYDGRTLSDRKIRVEL 157
DG+ L R I+V +
Sbjct 267 ALDGQNLEGRAIKVNV 282
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIALN 142
LFVGNLP V +Q + F + + I +V + +DT S+G GFV + E + A+
Sbjct 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEV--IYNRDTDQSRGFGFVTMSTVEEAEKAVE 172
Query 143 -YDGRTLSDRKIRVELTAGGGGK 164
++ ++ R++ V A G +
Sbjct 173 KFNSFEVNGRRLTVNRAAPRGSR 195
> dre:368358 sb:cb657
Length=103
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIALN 142
+FV +P +V+ +EVKE+FG+ Q +K L +K+TG +G ++ FT +E LQ AL
Sbjct 15 VFVTKVPWTVATKEVKEYFGQFGQ--VKRCLLPLDKETGFHRGFCWIGFTTEEGLQNALQ 72
Query 143 YDGRTLSDRKIRVE 156
D + K++V+
Sbjct 73 KDPHIIEGAKLQVQ 86
> tpv:TP03_0088 hypothetical protein; K14396 polyadenylate-binding
protein 2
Length=151
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIALN 142
++VGN+ S QE++EFF Q I + ++ +K TG KG +VEF+N++A+ A+
Sbjct 44 IYVGNVDYSTKPQELQEFFKSSGQ--INRITIMVDKYTGHPKGYAYVEFSNEDAVNNAIM 101
Query 143 YDGRTLSDRKIRV 155
+ +R I+V
Sbjct 102 LNESLFKERIIKV 114
> xla:379871 cstf2, MGC53575, MGC83019, cstf-64; cleavage stimulation
factor, 3' pre-RNA, subunit 2, 64kDa; K14407 cleavage
stimulation factor subunit 2
Length=518
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKE-ALQIAL 141
+FVGN+P + +++K+ F + RL+ +++TG KG GF E+ ++E AL
Sbjct 18 VFVGNIPYEATEEQLKDIFSEVGP--VVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query 142 NYDGRTLSDRKIRVELTAGGGGK 164
N +GR S R +RV+ A K
Sbjct 76 NLNGREFSGRALRVDNAASEKNK 98
> ath:AT5G61030 GR-RBP3 (glycine-rich RNA-binding protein 3);
ATP binding / RNA binding
Length=309
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIAL- 141
LF+G + S+ ++E F + + + D R++ +++TG S+G GFV FT+ EA A+
Sbjct 42 LFIGGMAYSMDEDSLREAFTKYGE--VVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQ 99
Query 142 NYDGRTLSDRKIRVEL 157
DGR L R ++V
Sbjct 100 ALDGRDLHGRVVKVNY 115
> mmu:83410 Cstf2t, 64kDa, C77975, tCstF-64, tauCstF-64; cleavage
stimulation factor, 3' pre-RNA subunit 2, tau; K14407 cleavage
stimulation factor subunit 2
Length=632
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKE-ALQIAL 141
+FVGN+P + +++K+ F + RL+ +++TG KG GF E+ ++E AL
Sbjct 18 VFVGNIPYEATEEQLKDIFSEVGS--VVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query 142 NYDGRTLSDRKIRVELTAGGGGK 164
N +GR S R +RV+ A K
Sbjct 76 NLNGREFSGRALRVDNAASEKNK 98
> hsa:23283 CSTF2T, CstF-64T, DKFZp434C1013, KIAA0689; cleavage
stimulation factor, 3' pre-RNA, subunit 2, 64kDa, tau variant;
K14407 cleavage stimulation factor subunit 2
Length=616
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKE-ALQIAL 141
+FVGN+P + +++K+ F + RL+ +++TG KG GF E+ ++E AL
Sbjct 18 VFVGNIPYEATEEQLKDIFSEVGS--VVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query 142 NYDGRTLSDRKIRVELTAGGGGK 164
N +GR S R +RV+ A K
Sbjct 76 NLNGREFSGRALRVDNAASEKNK 98
> sce:YOL123W HRP1, NAB4, NAB5; Hrp1p; K14411 RNA-binding protein
Musashi
Length=534
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query 71 DANDKTSKVPLVLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVE 130
D DKT K+ FVG + V +E +EFF + + D +L+ +KDTG S+G GFV
Sbjct 237 DEQDKTGKI----FVGGIGPDVRPKEFEEFFSQWGTII--DAQLMLDKDTGQSRGFGFVT 290
Query 131 FTNKEALQIALNYDGRTLSDRKIRV 155
+ + +A+ DRKI +
Sbjct 291 YDSADAVDRVCQNKFIDFKDRKIEI 315
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query 77 SKVPLVLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEF 131
SK +F+G L + ++E+FG+ + D++++ + TG S+G GF+ F
Sbjct 155 SKESCKMFIGGLNWDTTEDNLREYFGKYGT--VTDLKIMKDPATGRSRGFGFLSF 207
> sce:YIR001C SGN1, RBP1, RBP29; Cytoplasmic RNA-binding protein,
contains an RNA recognition motif (RRM); may have a role
in mRNA translation, as suggested by genetic interactions with
genes encoding proteins involved in translational initiation;
K14396 polyadenylate-binding protein 2
Length=250
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIALN 142
+FVGN+ V+ +++++ F Q IK + LL +++TG KG G++EF + + AL
Sbjct 66 IFVGNITPDVTPEQIEDHFKDCGQ--IKRITLLYDRNTGTPKGYGYIEFESPAYREKALQ 123
Query 143 YDGRTLSDRKIRV 155
+G L +KI V
Sbjct 124 LNGGELKGKKIAV 136
> mmu:108062 Cstf2, 64kDa, C630034J23Rik, Cstf64; cleavage stimulation
factor, 3' pre-RNA subunit 2; K14407 cleavage stimulation
factor subunit 2
Length=580
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKE-ALQIAL 141
+FVGN+P + +++K+ F + RL+ +++TG KG GF E+ ++E AL
Sbjct 18 VFVGNIPYEATEEQLKDIFSEVGP--VVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query 142 NYDGRTLSDRKIRVELTAGGGGK 164
N +GR S R +RV+ A K
Sbjct 76 NLNGREFSGRALRVDNAASEKNK 98
> cel:R09B3.3 hypothetical protein
Length=85
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 3/77 (3%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIALN 142
++VGN P + ++ +F + + +VR++ +++TG +G FVEFT + A Q A++
Sbjct 6 VYVGNAPFQTTEDDLGNYFSQAGN--VSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVD 63
Query 143 -YDGRTLSDRKIRVELT 158
++G + R +RV L
Sbjct 64 QFNGVDFNGRALRVNLA 80
> hsa:1478 CSTF2, CstF-64; cleavage stimulation factor, 3' pre-RNA,
subunit 2, 64kDa; K14407 cleavage stimulation factor subunit
2
Length=577
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKE-ALQIAL 141
+FVGN+P + +++K+ F + RL+ +++TG KG GF E+ ++E AL
Sbjct 18 VFVGNIPYEATEEQLKDIFSEVGP--VVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75
Query 142 NYDGRTLSDRKIRVELTAGGGGK 164
N +GR S R +RV+ A K
Sbjct 76 NLNGREFSGRALRVDNAASEKNK 98
> ath:AT3G18610 ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1); nucleic
acid binding / nucleotide binding; K11294 nucleolin
Length=636
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query 82 VLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIAL 141
LF GNL ++ +++ FF ++ DVRL + D G+ KG G +EF + E Q AL
Sbjct 385 TLFAGNLSYQIARSDIENFFKEAGEVV--DVRL-SSFDDGSFKGYGHIEFASPEEAQKAL 441
Query 142 NYDGRTLSDRKIRVEL 157
+G+ L R +R++L
Sbjct 442 EMNGKLLLGRDVRLDL 457
> pfa:MAL13P1.120 splicing factor, putative; K13091 RNA-binding
protein 39
Length=864
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query 81 LVLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIA 140
L + V NL L +++ EFF ++ ++D++ + ++ +G SKG +VEF +EA+ A
Sbjct 487 LTVLVLNLDLKADERDIYEFFS-EVAGKVRDIQCIKDQRSGKSKGVAYVEFYTQEAVIKA 545
Query 141 LNYDGRTLSDRKIRV 155
L +G L +R I++
Sbjct 546 LAANGMMLKNRPIKI 560
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 50/89 (56%), Gaps = 10/89 (11%)
Query 71 DANDKTSKVPLVLFVGNL--PLS-VSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCG 127
D ND +PL L++G L PLS ++ QE+K+ F + DV + + TG SKG G
Sbjct 580 DPND----IPLKLYIGGLLGPLSNITEQELKQLFNPFGDIL--DVEIHRDPYTGKSKGFG 633
Query 128 FVEFTN-KEALQIALNYDGRTLSDRKIRV 155
F++F EA++ +G ++ R+I+V
Sbjct 634 FIQFHKASEAIEALTVMNGMEVAGREIKV 662
> ath:AT1G71800 cleavage stimulation factor, putative; K14407
cleavage stimulation factor subunit 2
Length=461
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKE-ALQIAL 141
+FVGN+P + ++++E G + RL+T+++TG KG GF E+ ++E AL
Sbjct 11 VFVGNIPYDATEEQLREICGEVGPVV--SFRLVTDRETGKPKGYGFCEYKDEETALSARR 68
Query 142 NYDGRTLSDRKIRVEL 157
N ++ R++RV+
Sbjct 69 NLQSYEINGRQLRVDF 84
> sce:YDL213C NOP6; Nop6p; K14789 nucleolar protein 6
Length=225
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 45/92 (48%), Gaps = 16/92 (17%)
Query 81 LVLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEA---- 136
++FVG+LP ++A E++ F +RL A KG F+EF +
Sbjct 78 FIVFVGSLPRDITAVELQNHFKNSSP---DQIRLR------ADKGIAFLEFDADKDRTGI 128
Query 137 ---LQIALNYDGRTLSDRKIRVELTAGGGGKS 165
+ IAL G L ++KI VELT GGGG S
Sbjct 129 QRRMDIALLQHGTLLKEKKINVELTVGGGGNS 160
> ath:AT1G74230 GR-RBP5 (glycine-rich RNA-binding protein 5);
ATP binding / RNA binding
Length=289
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIALN 142
+FVG + S ++E F + + + D +++ +++TG S+G FV FT+ E A+
Sbjct 36 IFVGGISYSTDEFGLREAFSKYGE--VVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ 93
Query 143 YDGRTLSDRKIRVEL 157
DG+ L R+IRV
Sbjct 94 LDGQDLHGRRIRVNY 108
> mmu:52202 Rbm34, 4930547K05Rik, 6330444B11, D8Ertd233e; RNA
binding motif protein 34; K14837 nucleolar protein 12
Length=442
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQL-FIKDVRLLTEKDTGASKGCGFVEFTNKEALQIAL 141
+FVGNLP + ++E F L I VR++ TG +G G+V F N +A+ +AL
Sbjct 293 VFVGNLPYKIEDSALEEHF---LDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLAL 349
Query 142 NYDGRTLSDRKIRV 155
+ L RK+RV
Sbjct 350 KLNNSELMGRKLRV 363
> hsa:390748 PABPN1L, PABPNL1, ePABP2; poly(A) binding protein,
nuclear 1-like (cytoplasmic); K14396 polyadenylate-binding
protein 2
Length=278
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 67/147 (45%), Gaps = 15/147 (10%)
Query 10 LQLLKTALRAQQQQRKTKKGRK-QQQSEQQNVQNGQQLRDSQQDQLQRKKLHQTEKESEH 68
L+ +K + A +Q T + QQQ+E++ QL + + + E++H
Sbjct 87 LEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADH 146
Query 69 SSDANDKTSKVPLVLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGF 128
S ++VGN+ SA+E++ F R + + V +L +K +G KG +
Sbjct 147 RS------------VYVGNVDYGGSAEELEAHFSRCGE--VHRVTILCDKFSGHPKGYAY 192
Query 129 VEFTNKEALQIALNYDGRTLSDRKIRV 155
+EF K ++Q A+ D R I+V
Sbjct 193 IEFATKGSVQAAVELDQSLFRGRVIKV 219
> bbo:BBOV_IV003970 23.m05815; RNA recognition motif containing
protein; K14838 nucleolar protein 15
Length=187
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 12/75 (16%)
Query 82 VLFVGNLPLSVSAQEVKEFFGRKLQLF--IKDVRLLTEKDTGASKGCGFVEFTNKEALQI 139
+++VGNLP +++ ++++F + F +K +RL+ K TG S+G F++F + E +I
Sbjct 11 IIYVGNLPKALNESNIRKYF----EQFGTVKKIRLMKSKKTGNSRGYCFLQFESNEIAKI 66
Query 140 AL----NY--DGRTL 148
A NY DGR L
Sbjct 67 AAEAMNNYFIDGRVL 81
> ath:AT3G14100 oligouridylate-binding protein, putative
Length=427
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 7/82 (8%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLF--IKDVRLLTEKDTGASKGCGFVEFTNKEALQIA 140
+FVG+L V+ + + F +F D R++ ++ TG S+G GFV F N++ Q A
Sbjct 146 IFVGDLSPEVTDATLYQSF----SVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTA 201
Query 141 LN-YDGRTLSDRKIRVELTAGG 161
+N +G+ LS R+IR G
Sbjct 202 INEMNGKWLSSRQIRCNWATKG 223
> ath:AT1G60000 29 kDa ribonucleoprotein, chloroplast, putative
/ RNA-binding protein cp29, putative
Length=258
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 9/93 (9%)
Query 75 KTSKVPLV------LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGF 128
K +K PL LFVGNL +V+++ + F + R++ + DTG S+G GF
Sbjct 165 KPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFRECGD--VVGARVVFDGDTGRSRGYGF 222
Query 129 VEFTNKEALQIAL-NYDGRTLSDRKIRVELTAG 160
V +++K ++ AL + DG L R IRV L G
Sbjct 223 VCYSSKAEMETALESLDGFELEGRAIRVNLAQG 255
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Query 58 KLHQTEKESEHSSDANDKTSKVPLVLFVGNLPLSVS----AQEVKEFFGRKLQLFIKDVR 113
KL + EK+ + +S D + V L+ GNLP +V AQ +++F +L V
Sbjct 63 KLEEEEKD-DGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQDFANPEL------VE 115
Query 114 LLTEKDTGASKGCGFVEFTNKEALQIAL-NYDGRTLSDRKIRVEL 157
+L +DTG S+G FV +N E I + N DG R ++V
Sbjct 116 VLYNRDTGQSRGFAFVTMSNVEDCNIIIDNLDGTEYLGRALKVNF 160
> ath:AT4G14300 heterogeneous nuclear ribonucleoprotein, putative
/ hnRNP, putative; K14411 RNA-binding protein Musashi
Length=411
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 50/85 (58%), Gaps = 6/85 (7%)
Query 71 DANDKTSKVPLVLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVE 130
DA +KT K+ FVG LP +++ +E +++F ++ + DV ++ ++ T +G GFV
Sbjct 104 DAYNKTKKI----FVGGLPPTLTDEEFRQYF--EVYGPVTDVAIMYDQATNRPRGFGFVS 157
Query 131 FTNKEALQIALNYDGRTLSDRKIRV 155
F +++A+ L+ LS +++ V
Sbjct 158 FDSEDAVDSVLHKTFHDLSGKQVEV 182
> ath:AT5G09880 RNA recognition motif (RRM)-containing protein;
K13091 RNA-binding protein 39
Length=527
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Query 82 VLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIAL 141
+F +PL + ++V EFF + + ++DVRL+ ++++ SKG G++EF + ++ +A+
Sbjct 169 TVFAYQMPLKATERDVYEFFSKAGK--VRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI 226
Query 142 NYDGRTLSDRKIRV 155
G+ + + V
Sbjct 227 ALSGQLFLGQPVMV 240
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 13/75 (17%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLF--IKDVRLLTEKDTGASKGCGFVEFTNKE---AL 137
L+VGNL ++S ++++ F + F ++ V+L + +TG KG GF++F E A
Sbjct 267 LYVGNLHFNMSELQLRQIF----EAFGPVELVQLPLDPETGQCKGFGFIQFVQLEHSKAA 322
Query 138 QIALN----YDGRTL 148
QIALN GRT+
Sbjct 323 QIALNGKLEIAGRTI 337
> hsa:55147 RBM23, CAPERbeta, FLJ10482, MGC4458, RNPC4; RNA binding
motif protein 23
Length=439
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 9/80 (11%)
Query 80 PLVLFVGNLPLSVSAQEVK---EFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEA 136
P+ L+VG+L +++ ++ E FG+ I ++ L+ + DTG SKG GF+ F++ E
Sbjct 262 PMRLYVGSLHFNITEDMLRGIFEPFGK-----IDNIVLMKDSDTGRSKGYGFITFSDSEC 316
Query 137 LQIALN-YDGRTLSDRKIRV 155
+ AL +G L+ R +RV
Sbjct 317 ARRALEQLNGFELAGRPMRV 336
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query 82 VLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIAL 141
+F L + +++++FF + ++DVR+++++++ SKG +VEF +++ +A+
Sbjct 167 TVFCMQLAARIRPRDLEDFFSAVGK--VRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI 224
Query 142 NYDGRTLSDRKIRVELT 158
G+ L I V+ +
Sbjct 225 GLTGQRLLGVPIIVQAS 241
> cel:R09B3.2 hypothetical protein
Length=83
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIALN 142
++VGN P + +E+ FF Q I +VR++ +++TG +G F+EF + + Q A+
Sbjct 7 VYVGNAPFQTTEEELGNFFSSIGQ--INNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVE 64
Query 143 -YDGRTLSDRKIRVELT 158
+G + R +RV L
Sbjct 65 QMNGAEFNGRPLRVNLA 81
> hsa:7073 TIAL1, MGC33401, TCBP, TIAR; TIA1 cytotoxic granule-associated
RNA binding protein-like 1; K13201 nucleolysin TIA-1/TIAR
Length=392
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNK-EALQIAL 141
+FVG+L ++ +++K F + I D R++ + TG SKG GFV F NK +A +
Sbjct 116 VFVGDLSPEITTEDIKSAFAPFGK--ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query 142 NYDGRTLSDRKIRVEL 157
+ G+ L R+IR
Sbjct 174 HMGGQWLGGRQIRTNW 189
> mmu:21843 Tial1, 5330433G13Rik, AL033329, TIAR, mTIAR; Tia1
cytotoxic granule-associated RNA binding protein-like 1; K13201
nucleolysin TIA-1/TIAR
Length=392
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNK-EALQIAL 141
+FVG+L ++ +++K F + I D R++ + TG SKG GFV F NK +A +
Sbjct 116 VFVGDLSPEITTEDIKSAFAPFGK--ISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query 142 NYDGRTLSDRKIRVEL 157
+ G+ L R+IR
Sbjct 174 HMGGQWLGGRQIRTNW 189
> ath:AT4G24770 RBP31; RBP31 (31-KDA RNA BINDING PROTEIN); RNA
binding / poly(U) binding
Length=329
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 13/82 (15%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLF-----IKDVRLLTEKDTGASKGCGFVEFTNKEAL 137
++VGNLP V GR QLF + + R++ +++TG S+G GFV ++ + L
Sbjct 246 VYVGNLPWDVDN-------GRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDEL 298
Query 138 QIALN-YDGRTLSDRKIRVELT 158
A++ DG+ L R IRV +
Sbjct 299 NEAISALDGQNLEGRAIRVNVA 320
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 59/128 (46%), Gaps = 16/128 (12%)
Query 36 EQQNVQNGQQLRDSQQDQLQRKKLHQTEKESEHSSDANDKTSKVP-----LVLFVGNLPL 90
E Q+V G + S+ D + E E + S A + ++ P LFVGNL
Sbjct 103 ESQDVSEGDE---SEGDASEGDVSEGDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAY 159
Query 91 SVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIALN----YD-- 144
V++Q + F + + I +V + ++T S+G GFV ++ + + A+ YD
Sbjct 160 DVNSQALAMLFEQAGTVEIAEV--IYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLN 217
Query 145 GRTLSDRK 152
GR L+ K
Sbjct 218 GRLLTVNK 225
> hsa:9584 RBM39, CAPER, CAPERalpha, CC1.3, DKFZp781C0423, FLJ44170,
HCC1, RNPC2, fSAP59; RNA binding motif protein 39; K13091
RNA-binding protein 39
Length=524
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 9/85 (10%)
Query 75 KTSKVPLVLFVGNLPLSVSAQEVK---EFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEF 131
K S P+ L+VG+L +++ ++ E FGR I+ ++L+ + +TG SKG GF+ F
Sbjct 244 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGR-----IESIQLMMDSETGRSKGYGFITF 298
Query 132 TNKEALQIALN-YDGRTLSDRKIRV 155
++ E + AL +G L+ R ++V
Sbjct 299 SDSECAKKALEQLNGFELAGRPMKV 323
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIALN 142
+F L + ++++EFF + ++DVR+++++++ SKG +VEF + ++ +A+
Sbjct 155 VFCMQLAARIRPRDLEEFFSTVGK--VRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG 212
Query 143 YDG 145
G
Sbjct 213 LTG 215
> cpv:cgd4_3410 RNA binding protein
Length=906
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query 77 SKVPLV----LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFT 132
S +P V LFVG LP ++ E++E F Q I ++ ++ E +G KGC FV++
Sbjct 398 SCIPGVDQVKLFVGALPRNIIEDEIRELFSPYGQ--INEIFIMREPHSGVGKGCAFVKYA 455
Query 133 NKEALQIALN--YDGRTLSD--RKIRVELTA 159
KE A+ + TL+D R I V +
Sbjct 456 FKEQGLFAIKSLHGALTLADVNRPIEVRFAS 486
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIALN 142
+F+ N+P + + F R + L+ +K +G +KG FV + N + A+N
Sbjct 737 IFIFNVPYEWDKKSLVGLFCRFGNIL--SAHLMVDKTSGRNKGVAFVSYDNIHSAAEAVN 794
Query 143 YDGRTLSD--RKIRVELTAG 160
+ +++ RK++V + G
Sbjct 795 HMNGFITEQGRKLKVSIKQG 814
> mmu:170791 Rbm39, 1500012C14Rik, 2310040E03Rik, B330012G18Rik,
C79248, R75070, Rnpc2, caper; RNA binding motif protein 39;
K13091 RNA-binding protein 39
Length=530
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 50/85 (58%), Gaps = 9/85 (10%)
Query 75 KTSKVPLVLFVGNLPLSVSAQEVK---EFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEF 131
K S P+ L+VG+L +++ ++ E FGR I+ ++L+ + +TG SKG GF+ F
Sbjct 244 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGR-----IESIQLMMDSETGRSKGYGFITF 298
Query 132 TNKEALQIALN-YDGRTLSDRKIRV 155
++ E + AL +G L+ R ++V
Sbjct 299 SDSECAKKALEQLNGFELAGRPMKV 323
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIALN 142
+F L + ++++EFF + ++DVR+++++++ SKG +VEF + ++ +A+
Sbjct 155 VFCMQLAARIRPRDLEEFFSTVGK--VRDVRMISDRNSRRSKGIAYVEFVDVSSVPLAIG 212
Query 143 YDG 145
G
Sbjct 213 LTG 215
> xla:397919 ncl; nucleolin; K11294 nucleolin
Length=705
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query 82 VLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEF-TNKEALQIA 140
LFV N+P S SA+E++E F KD+R+ T D G++KG +VEF T EA +
Sbjct 377 TLFVKNIPYSTSAEELQEIFEN-----AKDIRIPTGND-GSNKGIAYVEFSTEAEANKAL 430
Query 141 LNYDGRTLSDRKIRVELT 158
G + R + V+ T
Sbjct 431 EEKQGAEIEGRSLFVDFT 448
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 57/111 (51%), Gaps = 12/111 (10%)
Query 50 QQDQLQRKKLHQTEKESEHSSDANDKTSKVPLVLFVGNLPLSVSAQEVK----EFFGRKL 105
QQ +RKK E D S+ +F+GNL ++ E+K EFF +K
Sbjct 254 QQGPAKRKKEMPKNNVPEAKKTKTDTASEG-FSIFIGNLNSTLDFDELKDALREFFSKK- 311
Query 106 QLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIALNYDGRTLSDRKIRVE 156
L I+DVR+ G SK G+V+F+++E ++ AL G+ + ++++E
Sbjct 312 NLTIQDVRI------GGSKKFGYVDFSSEEEVEKALKLSGKKILGLEVKIE 356
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 5/59 (8%)
Query 82 VLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIA 140
LFV L + + +KE F + + R++T++DTGASKG GFV+F++ E + A
Sbjct 555 TLFVRGLSEDTTEETLKEAFDGSI-----NARIVTDRDTGASKGFGFVDFSSAEDAKAA 608
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 8/78 (10%)
Query 82 VLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIAL 141
VL V NL S + ++E F + + I ++ G +KG FVEF++ E + A+
Sbjct 467 VLVVNNLSYSATEDSLREVFEKATSIRI-------PQNQGRAKGFAFVEFSSMEDAKEAM 519
Query 142 NYDGRT-LSDRKIRVELT 158
+ T + R IR+E +
Sbjct 520 DSCNNTEVEGRSIRLEFS 537
> sce:YNL004W HRB1, TOM34; Hrb1p
Length=454
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIALN 142
+FVGNL + +++ EFF + ++ D+ +T + G +G G VEFTN + + A+
Sbjct 163 IFVGNLTYDSTPEDLTEFFSQIGKVVRADI--ITSR--GHHRGMGTVEFTNSDDVDRAIR 218
Query 143 -YDGRTLSDRKIRV 155
YDG DRKI V
Sbjct 219 QYDGAFFMDRKIFV 232
> ath:AT4G16280 FCA; FCA; RNA binding
Length=533
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 25/105 (23%)
Query 66 SEHSS----DANDKTSKVPLVLFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTG 121
S+H S D +D++S V LFVG++P + + +E++ +F + + +V L+ +K TG
Sbjct 103 SDHGSFTGTDVSDRSSTV--KLFVGSVPRTATEEEIRPYFEQHGNVL--EVALIKDKRTG 158
Query 122 ASKGCGFVEF-TNKEALQIALNYDGRTLSDRKIRV---ELTAGGG 162
+GC FV++ T+K+A DR IR ++T GG
Sbjct 159 QQQGCCFVKYATSKDA-------------DRAIRALHNQITLPGG 190
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 5/61 (8%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQL-FIKDVRLLTEKDTGASKGCGFVEFTNKEALQIAL 141
LFVG+L + +EV+E F LQ ++DV L+ + + S+GCGFV++++KE A+
Sbjct 213 LFVGSLNKQATEKEVEEIF---LQFGHVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAI 268
Query 142 N 142
+
Sbjct 269 D 269
> cpv:cgd6_410 Sgn1p-like RRM domain containing protein ; K14396
polyadenylate-binding protein 2
Length=262
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query 83 LFVGNLPLSVSAQEVKEFFGRKLQLFIKDVRLLTEKDTGASKGCGFVEFTNKEALQIALN 142
+++GN+ E+++ F K I + ++ +K TG KG ++EF EA++ AL
Sbjct 112 IYIGNVDYGTKLTELQDLF--KSCGSINRITIMNDKRTGMPKGFAYLEFCEPEAVETALK 169
Query 143 YDGRTLSDRKIRV 155
+DG R+I+V
Sbjct 170 FDGAMFRGRQIKV 182
Lambda K H
0.313 0.129 0.341
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 3962792044
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40