bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_1074_orf1
Length=146
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_030960 splicing factor 3B subunit 3, putative ; K12... 224 7e-59
cpv:cgd8_4240 possible spliceosome factor ; K12830 splicing fa... 136 2e-32
pfa:PFL1680w splicing factor 3b, subunit 3, 130kD, putative; K... 135 4e-32
ath:AT3G55200 splicing factor, putative; K12830 splicing facto... 128 6e-30
ath:AT3G55220 splicing factor, putative 128 6e-30
cel:K02F2.3 tag-203; Temporarily Assigned Gene name family mem... 119 2e-27
dre:406824 sf3b3, ik:tdsubc_2b2, wu:fb81f05, xx:tdsubc_2b2, zg... 119 3e-27
mmu:101943 Sf3b3, 1810061H24Rik, 5730409A01Rik, AA409318, D8Er... 117 1e-26
hsa:23450 SF3B3, KIAA0017, RSE1, SAP130, SF3b130, STAF130; spl... 117 1e-26
bbo:BBOV_II004270 18.m06355; splicing factor 3b, subunit 3, 13... 90.5 2e-18
tpv:TP04_0182 hypothetical protein; K12830 splicing factor 3B ... 86.7 3e-17
xla:399026 ddb1, MGC68476, ddba, uv-ddb1, xap1, xpce, xpe, xpe... 47.8 1e-05
hsa:1642 DDB1, DDBA, UV-DDB1, XAP1, XPCE, XPE, XPE-BF; damage-... 47.8 1e-05
hsa:100290337 DNA damage-binding protein 1-like; K10610 DNA da... 47.8 1e-05
mmu:13194 Ddb1, 127kDa, AA408517, p127-Ddb1; damage specific D... 47.8 1e-05
sce:YML049C RSE1; Protein involved in pre-mRNA splicing; compo... 38.9 0.006
ath:AT4G05420 DDB1A; DDB1A (DAMAGED DNA BINDING PROTEIN 1A); D... 37.7 0.014
ath:AT4G21100 DDB1B; DDB1B (Damaged DNA Binding Protein 1 B); ... 37.0 0.019
cpv:cgd1_2840 contains a UVDDB domain that is present in CPSF_... 37.0 0.020
pfa:PFC0780w CPSF (cleavage and polyadenylation specific facto... 33.5 0.22
tgo:TGME49_067710 hypothetical protein 31.6 1.0
cel:F21G4.6 hypothetical protein 30.8 1.6
sce:YOR250C CLP1; Clp1p; K14399 polyribonucleotide 5'-hydroxyl... 30.8 1.8
ath:AT3G21280 UBP7; UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7); ubiq... 29.6 3.1
ath:AT5G47140 zinc finger (GATA type) family protein 29.6 3.6
ath:AT1G51710 UBP6; UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6); calm... 29.3 4.5
sce:YDL167C NRP1; Nrp1p 28.9 6.7
> tgo:TGME49_030960 splicing factor 3B subunit 3, putative ; K12830
splicing factor 3B subunit 3
Length=1233
Score = 224 bits (571), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 99/146 (67%), Positives = 124/146 (84%), Gaps = 0/146 (0%)
Query 1 GKKRLLKKCEYKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60
G+KRLLKKCEYKNLP G+ F++V GDR+F GD+ ES+HV++Y+ + NLFYVL DD PRW
Sbjct 990 GRKRLLKKCEYKNLPCGVAFIRVAGDRLFVGDVRESVHVMRYRLSENLFYVLADDVVPRW 1049
Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTV 120
LT+GEVLDYH+ VAADKFDS+FI RVPSEA++DE GD+TGL+LRGDT Y+TD C KL ++
Sbjct 1050 LTKGEVLDYHTFVAADKFDSVFICRVPSEAKEDELGDTTGLRLRGDTTYLTDKCFKLQSL 1109
Query 121 LQFHVGETVTGLRRATLSTGASEAIV 146
L FH+GE VT L RATL++ ASE+IV
Sbjct 1110 LHFHIGEIVTALERATLTSAASESIV 1135
> cpv:cgd8_4240 possible spliceosome factor ; K12830 splicing
factor 3B subunit 3
Length=1317
Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 96/147 (65%), Gaps = 1/147 (0%)
Query 1 GKKRLLKKCEYKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60
GKKRLL+K EY+N+P G+ ++KV DRIFAGD+S + V K+ +N F ++ D PRW
Sbjct 1073 GKKRLLRKSEYRNIPQGLTWIKVVNDRIFAGDISNGVLVFKFNNTSNQFILVAKDPMPRW 1132
Query 61 LTRG-EVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDT 119
LT EVLDYH+I +DKFD+I + RVP+EA D ++ + H+++T
Sbjct 1133 LTSACEVLDYHTIAVSDKFDNIIVSRVPAEASDDFSFVTSFTDNNNSQSSALMRTHQINT 1192
Query 120 VLQFHVGETVTGLRRATLSTGASEAIV 146
V QFH+G+ VT L+++ L+ ++EAI+
Sbjct 1193 VAQFHLGDIVTCLQKSQLTPTSAEAII 1219
> pfa:PFL1680w splicing factor 3b, subunit 3, 130kD, putative;
K12830 splicing factor 3B subunit 3
Length=1329
Score = 135 bits (340), Expect = 4e-32, Method: Composition-based stats.
Identities = 69/146 (47%), Positives = 99/146 (67%), Gaps = 0/146 (0%)
Query 1 GKKRLLKKCEYKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60
GKK+LLKKCEYK++P IV +K+ G+RIFA D+ ES+ + Y N N ++ DD PRW
Sbjct 1086 GKKKLLKKCEYKDIPEAIVSIKISGNRIFACDIRESVLIFFYDPNQNTLRLISDDIIPRW 1145
Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTV 120
+T E+LD+H+I+AADKFDS+FI RVP EA+QDE G + G+ + KL+ +
Sbjct 1146 ITCSEILDHHTIMAADKFDSVFILRVPEEAKQDEYGITNKCWYGGEIMNSSTKNRKLEHM 1205
Query 121 LQFHVGETVTGLRRATLSTGASEAIV 146
+ FH+GE VT +++ LS +SE I+
Sbjct 1206 MSFHIGEIVTSMQKVRLSPTSSECII 1231
> ath:AT3G55200 splicing factor, putative; K12830 splicing factor
3B subunit 3
Length=1214
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 94/146 (64%), Gaps = 0/146 (0%)
Query 1 GKKRLLKKCEYKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60
GKKRLL+KCE K P+ I+ ++ DRI+ GD+ ES H KY+ + N Y+ DD PRW
Sbjct 971 GKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRW 1030
Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTV 120
LT +D+ ++ ADKF +++ R+P + ++ D TG K++ + + + +K+D +
Sbjct 1031 LTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEI 1090
Query 121 LQFHVGETVTGLRRATLSTGASEAIV 146
+QFHVG+ VT L++A++ G SE+I+
Sbjct 1091 VQFHVGDVVTCLQKASMIPGGSESIM 1116
> ath:AT3G55220 splicing factor, putative
Length=1214
Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 94/146 (64%), Gaps = 0/146 (0%)
Query 1 GKKRLLKKCEYKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60
GKKRLL+KCE K P+ I+ ++ DRI+ GD+ ES H KY+ + N Y+ DD PRW
Sbjct 971 GKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRW 1030
Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTV 120
LT +D+ ++ ADKF +++ R+P + ++ D TG K++ + + + +K+D +
Sbjct 1031 LTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEI 1090
Query 121 LQFHVGETVTGLRRATLSTGASEAIV 146
+QFHVG+ VT L++A++ G SE+I+
Sbjct 1091 VQFHVGDVVTCLQKASMIPGGSESIM 1116
> cel:K02F2.3 tag-203; Temporarily Assigned Gene name family member
(tag-203); K12830 splicing factor 3B subunit 3
Length=1220
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/146 (39%), Positives = 87/146 (59%), Gaps = 0/146 (0%)
Query 1 GKKRLLKKCEYKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60
G+K+LL KCE KN P IV ++ G RI D ES+H ++Y+ N V DDT PR+
Sbjct 976 GQKKLLAKCENKNFPVSIVNIQSTGQRIIVSDSQESVHFLRYRKGDNQLVVFADDTTPRY 1035
Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTV 120
+T VLDYH++ ADKF ++ + R+P +D D T K D ++ + K++ V
Sbjct 1036 VTCVCVLDYHTVAVADKFGNLAVVRLPERVNEDVQDDPTVSKSVWDRGWLNGASQKVELV 1095
Query 121 LQFHVGETVTGLRRATLSTGASEAIV 146
F +G+T+T L++ +L GA+EA+V
Sbjct 1096 SNFFIGDTITSLQKTSLMPGANEALV 1121
> dre:406824 sf3b3, ik:tdsubc_2b2, wu:fb81f05, xx:tdsubc_2b2,
zgc:55440; splicing factor 3b, subunit 3; K12830 splicing factor
3B subunit 3
Length=1217
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 0/146 (0%)
Query 1 GKKRLLKKCEYKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60
GKK+LL+KCE K++P+ + + G R+ D+ ES+ ++Y+ N N + DDT PRW
Sbjct 973 GKKKLLRKCENKHVPNLVTGIHTIGQRVIVSDVQESLFWVRYRRNENQLIIFADDTYPRW 1032
Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTV 120
+T +LDY ++ +ADKF +I + R+P D D TG K D + + K + +
Sbjct 1033 ITTACLLDYDTMASADKFGNICVVRLPPNTSDDVDEDPTGNKALWDRGLLNGASQKAEII 1092
Query 121 LQFHVGETVTGLRRATLSTGASEAIV 146
+ +H+GETV L++ TL G SE++V
Sbjct 1093 INYHIGETVLSLQKTTLIPGGSESLV 1118
> mmu:101943 Sf3b3, 1810061H24Rik, 5730409A01Rik, AA409318, D8Ertd633e,
RSE1, SAP130, mKIAA0017; splicing factor 3b, subunit
3; K12830 splicing factor 3B subunit 3
Length=1217
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 85/146 (58%), Gaps = 0/146 (0%)
Query 1 GKKRLLKKCEYKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60
GKK+LL+KCE K++ + I ++ G R+ D+ ES ++YK N N + DDT PRW
Sbjct 973 GKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRW 1032
Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTV 120
+T +LDY ++ ADKF +I + R+P + D TG K D + + K + +
Sbjct 1033 VTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVI 1092
Query 121 LQFHVGETVTGLRRATLSTGASEAIV 146
+ +HVGETV L++ TL G SE++V
Sbjct 1093 MNYHVGETVLSLQKTTLIPGGSESLV 1118
> hsa:23450 SF3B3, KIAA0017, RSE1, SAP130, SF3b130, STAF130; splicing
factor 3b, subunit 3, 130kDa; K12830 splicing factor
3B subunit 3
Length=1217
Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 55/146 (37%), Positives = 85/146 (58%), Gaps = 0/146 (0%)
Query 1 GKKRLLKKCEYKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60
GKK+LL+KCE K++ + I ++ G R+ D+ ES ++YK N N + DDT PRW
Sbjct 973 GKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRW 1032
Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTV 120
+T +LDY ++ ADKF +I + R+P + D TG K D + + K + +
Sbjct 1033 VTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVI 1092
Query 121 LQFHVGETVTGLRRATLSTGASEAIV 146
+ +HVGETV L++ TL G SE++V
Sbjct 1093 MNYHVGETVLSLQKTTLIPGGSESLV 1118
> bbo:BBOV_II004270 18.m06355; splicing factor 3b, subunit 3,
130kD; K12830 splicing factor 3B subunit 3
Length=1169
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 76/142 (53%), Gaps = 24/142 (16%)
Query 1 GKKRLLKKCEYKNLPS-GIVFLKVCGDRIFAGDMSESIHVIK---YKANANLFYVLCDDT 56
GKK+LL K E++ G ++L G RIFAGD+ E I +++ Y A F + T
Sbjct 943 GKKQLLLKAEHRTCSDHGFIWLNAVGSRIFAGDIREGIQILRIKFYSEEAAEFEWVGGAT 1002
Query 57 GPRWLTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHK 116
GPRWLT LDY +++A DKFDSIF+ RVP E T ++ +
Sbjct 1003 GPRWLTSCAQLDYSTVIAGDKFDSIFVTRVPQEE---------------STRHI-----Q 1042
Query 117 LDTVLQFHVGETVTGLRRATLS 138
L+ V QFH+G+ T + +A LS
Sbjct 1043 LENVCQFHLGDLPTAMDKAALS 1064
> tpv:TP04_0182 hypothetical protein; K12830 splicing factor 3B
subunit 3
Length=1231
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 83/150 (55%), Gaps = 23/150 (15%)
Query 1 GKKRLLKKCEYKNLPS-GIVFLKVCGDRIFAGDMSESIHVIK---YKANANLFYVLCDDT 56
G+K++L K E+++L S G + +KV G RI+ GD+ ES+ +++ Y + F + T
Sbjct 1004 GRKQMLLKGEHRSLTSNGFMDIKVVGSRIYCGDIRESVQLLRLKFYGEDLGEFELTTTST 1063
Query 57 GPRWLTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHK 116
GPRWL+ E+LDY +++A DKFDS+F+ RVP ++ S +
Sbjct 1064 GPRWLSTMELLDYSTVIAGDKFDSLFVSRVP---HNEDVVRSNYFEYHN----------- 1109
Query 117 LDTVLQFHVGETVTGLRRATLSTGASEAIV 146
QFH+G+ VT L+R ++ SE ++
Sbjct 1110 -----QFHLGDIVTSLQRVRINPIHSEVVL 1134
> xla:399026 ddb1, MGC68476, ddba, uv-ddb1, xap1, xpce, xpe, xpe-bf;
damage-specific DNA binding protein 1, 127kDa; K10610
DNA damage-binding protein 1
Length=1140
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query 1 GKKRLLKKCE-YKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPR 59
+K L +C Y N+ + ++LK GD I GD+ S+ ++ YK F + D P
Sbjct 895 AEKELRTECNHYNNIMA--LYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPN 952
Query 60 WLTRGEVLDYHSIVAADKFDSIFIERVPSEARQDE 94
W++ E+LD + + A+ ++F+ + S A DE
Sbjct 953 WMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDE 987
> hsa:1642 DDB1, DDBA, UV-DDB1, XAP1, XPCE, XPE, XPE-BF; damage-specific
DNA binding protein 1, 127kDa; K10610 DNA damage-binding
protein 1
Length=1140
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 10/140 (7%)
Query 2 KKRLLKKCE-YKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60
+K L +C Y N+ + ++LK GD I GD+ S+ ++ YK F + D P W
Sbjct 896 EKELRTECNHYNNIMA--LYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNW 953
Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGG---DSTGLKLRGDTAYMTDSCHKL 117
++ E+LD + + A+ ++F+ + S A DE GL G+ ++ CH
Sbjct 954 MSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGE--FVNVFCH-- 1009
Query 118 DTVLQFHVGETVTGLRRATL 137
+++ ++GET T + + L
Sbjct 1010 GSLVMQNLGETSTPTQGSVL 1029
> hsa:100290337 DNA damage-binding protein 1-like; K10610 DNA
damage-binding protein 1
Length=1140
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 10/140 (7%)
Query 2 KKRLLKKCE-YKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60
+K L +C Y N+ + ++LK GD I GD+ S+ ++ YK F + D P W
Sbjct 896 EKELRTECNHYNNIMA--LYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNW 953
Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGG---DSTGLKLRGDTAYMTDSCHKL 117
++ E+LD + + A+ ++F+ + S A DE GL G+ ++ CH
Sbjct 954 MSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGE--FVNVFCH-- 1009
Query 118 DTVLQFHVGETVTGLRRATL 137
+++ ++GET T + + L
Sbjct 1010 GSLVMQNLGETSTPTQGSVL 1029
> mmu:13194 Ddb1, 127kDa, AA408517, p127-Ddb1; damage specific
DNA binding protein 1; K10610 DNA damage-binding protein 1
Length=1140
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query 2 KKRLLKKCE-YKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60
+K L +C Y N+ + ++LK GD I GD+ S+ ++ YK F + D P W
Sbjct 896 EKELRTECNHYNNIMA--LYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNW 953
Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDE 94
++ E+LD + + A+ ++F+ + S A DE
Sbjct 954 MSAVEILDDDNFLGAENAFNLFVCQKDSAATTDE 987
> sce:YML049C RSE1; Protein involved in pre-mRNA splicing; component
of the pre-spliceosome; associates with U2 snRNA; involved
in ER to Golgi transport; K12830 splicing factor 3B subunit
3
Length=1361
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 9/98 (9%)
Query 1 GKKRLLKKCEYKNLPSGIVFLKVCG------DRIFAGDMSESIHVIKYKANANLFYVLCD 54
GKK+LL++ + + + K+ +R+ GD+ ES+ + + N+F D
Sbjct 1055 GKKQLLRRSVTQ---TPVSITKIVSMHQWNYERLAVGDIHESVTLFIWDPAGNVFIPYVD 1111
Query 55 DTGPRWLTRGEVLDYHSIVAADKFDSIFIERVPSEARQ 92
D+ R +T + LD +++ AD++ + + R P E +
Sbjct 1112 DSVKRHVTVLKFLDEATVIGADRYGNAWTLRSPPECEK 1149
> ath:AT4G05420 DDB1A; DDB1A (DAMAGED DNA BINDING PROTEIN 1A);
DNA binding / protein binding; K10610 DNA damage-binding protein
1
Length=1067
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 18/119 (15%)
Query 19 VFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRWLTRGEVLDYHSIVAADKF 78
++++ GD I GD+ +SI ++ YK D W++ E+LD + A+
Sbjct 850 LYVQTRGDFIVVGDLMKSISLLLYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENN 909
Query 79 DSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTVLQFHVGETVTGLRRATL 137
++ + SE DE RG +L+ V ++H+GE V R +L
Sbjct 910 FNLLTVKKNSEGATDEE--------RG----------RLEVVGEYHLGEFVNRFRHGSL 950
> ath:AT4G21100 DDB1B; DDB1B (Damaged DNA Binding Protein 1 B);
damaged DNA binding / protein binding; K10610 DNA damage-binding
protein 1
Length=1088
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 18/119 (15%)
Query 19 VFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRWLTRGEVLDYHSIVAADKF 78
++++ GD I GD+ +SI ++ YK D W+T E+L+ + D
Sbjct 871 LYVQTRGDFIAVGDLMKSISLLIYKHEEGAIEERARDYNANWMTAVEILNDDIYLGTDNC 930
Query 79 DSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTVLQFHVGETVTGLRRATL 137
+IF + +E DE +++ V ++H+GE V R +L
Sbjct 931 FNIFTVKKNNEGATDE------------------ERARMEVVGEYHIGEFVNRFRHGSL 971
> cpv:cgd1_2840 contains a UVDDB domain that is present in CPSF_A
and damage specific DNA binding protein 1
Length=1495
Score = 37.0 bits (84), Expect = 0.020, Method: Composition-based stats.
Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 19/139 (13%)
Query 6 LKKCEYKNLPSGIVFLKVC-GDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRWLTRG 64
LK+ E + IVF+K+ G+ I GD+ S+ + ++ F+ +C D W+ G
Sbjct 1189 LKRKETYCTHTMIVFIKILNGEYILVGDLMRSVGLWEFDRYTGKFHEVCRDNSIAWVVEG 1248
Query 65 EVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTVLQFH 124
L + +D+ ++ RV E D Y + SC + H
Sbjct 1249 IFLSKDMYLISDENRNL---RVLMRTLNPE----------NDETYTSLSC-----IAHLH 1290
Query 125 VGETVTGLRRATLSTGASE 143
VGE++T ++ + E
Sbjct 1291 VGESITTFQQGKFTQAYPE 1309
> pfa:PFC0780w CPSF (cleavage and polyadenylation specific factor),
subunit A, putative
Length=2870
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query 16 SGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRWLTRGEVLDYHSIVAA 75
S I+ + V GD I GD+ S+ +++Y + + +C D W T L IV +
Sbjct 2634 SWIMTVDVYGDYIVVGDIMTSVTILQYDYENSQLFEVCRDYSNIWCTSLCALSKSHIVVS 2693
Query 76 DKFDSIFI 83
D D+ FI
Sbjct 2694 D-MDANFI 2700
> tgo:TGME49_067710 hypothetical protein
Length=2136
Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats.
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
Query 31 GDMSESIHVIKYKANANLFYVLCDDTGPRWLTRGEVL--DYHSIVAADKFDSIFIERVP- 87
GDM S ++++ N F + DT W L + H + AD+ + +ER
Sbjct 1830 GDMVASAVLLRFSPKDNAFKEIARDTNACWTLAVSCLSPNLHYLADADR-NIWLLERASL 1888
Query 88 --SEARQDEGGDSTGLKLRGDTAYMTDSCHK 116
SE R++EG ST +T CH+
Sbjct 1889 LGSEGRREEGVPSTRPNFPAETVEECSICHQ 1919
> cel:F21G4.6 hypothetical protein
Length=2022
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 7/95 (7%)
Query 51 VLCDDTGPRWLTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYM 110
+LC+ P ++ +L V + +F E+VP +R D+ L+ T +
Sbjct 624 LLCEARMPTYVKMTAIL--RESVNSPEFSH---EKVPKLSRMHWNSDTLPAVLQVMTVSL 678
Query 111 TDSCHKLDTVLQFHVGETVTGL--RRATLSTGASE 143
+DS K D FHVG +V R + GA+E
Sbjct 679 SDSHSKEDCYHGFHVGMSVLNWVYRNVFIVRGAAE 713
> sce:YOR250C CLP1; Clp1p; K14399 polyribonucleotide 5'-hydroxyl-kinase
[EC:2.7.1.78]
Length=445
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query 32 DMSESIHVIKYKANANLFYVLCDDTGPRW----LTRGEVLDYHSIVAADKFDSI 81
+++E H+I+ K N N+ VLC +T P W T G L ++I K D +
Sbjct 261 NLAELHHIIE-KLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGV 313
> ath:AT3G21280 UBP7; UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7); ubiquitin
thiolesterase/ ubiquitin-specific protease; K11843 ubiquitin
carboxyl-terminal hydrolase 14 [EC:3.1.2.15]
Length=532
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 0/52 (0%)
Query 72 IVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTVLQF 123
IV A + +F+E +P E + G S GL G+T YM + L +V +
Sbjct 132 IVKAPEKGPVFMEDLPEEQQAANLGYSAGLVNLGNTCYMNSTMQCLISVPEL 183
> ath:AT5G47140 zinc finger (GATA type) family protein
Length=470
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 0/34 (0%)
Query 51 VLCDDTGPRWLTRGEVLDYHSIVAADKFDSIFIE 84
VLC+ G RW T+G +++Y + A + D IE
Sbjct 27 VLCNACGSRWRTKGSLVNYTPLHARAEGDETEIE 60
> ath:AT1G51710 UBP6; UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6); calmodulin
binding / ubiquitin-specific protease; K11843 ubiquitin
carboxyl-terminal hydrolase 14 [EC:3.1.2.15]
Length=443
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 0/52 (0%)
Query 72 IVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTVLQF 123
IV A + +F E +P EA G S GL G+T YM + L +V +
Sbjct 38 IVKAPEKAIVFAEDLPEEALATNLGYSAGLVNLGNTCYMNSTVQCLKSVPEL 89
> sce:YDL167C NRP1; Nrp1p
Length=719
Score = 28.9 bits (63), Expect = 6.7, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 0/32 (0%)
Query 9 CEYKNLPSGIVFLKVCGDRIFAGDMSESIHVI 40
C Y N +V L+ G + +GD SE+ H I
Sbjct 590 CTYHNFAKNVVCLRCGGPKSISGDASETNHYI 621
Lambda K H
0.320 0.137 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2872883024
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40