bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_1074_orf1 Length=146 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_030960 splicing factor 3B subunit 3, putative ; K12... 224 7e-59 cpv:cgd8_4240 possible spliceosome factor ; K12830 splicing fa... 136 2e-32 pfa:PFL1680w splicing factor 3b, subunit 3, 130kD, putative; K... 135 4e-32 ath:AT3G55200 splicing factor, putative; K12830 splicing facto... 128 6e-30 ath:AT3G55220 splicing factor, putative 128 6e-30 cel:K02F2.3 tag-203; Temporarily Assigned Gene name family mem... 119 2e-27 dre:406824 sf3b3, ik:tdsubc_2b2, wu:fb81f05, xx:tdsubc_2b2, zg... 119 3e-27 mmu:101943 Sf3b3, 1810061H24Rik, 5730409A01Rik, AA409318, D8Er... 117 1e-26 hsa:23450 SF3B3, KIAA0017, RSE1, SAP130, SF3b130, STAF130; spl... 117 1e-26 bbo:BBOV_II004270 18.m06355; splicing factor 3b, subunit 3, 13... 90.5 2e-18 tpv:TP04_0182 hypothetical protein; K12830 splicing factor 3B ... 86.7 3e-17 xla:399026 ddb1, MGC68476, ddba, uv-ddb1, xap1, xpce, xpe, xpe... 47.8 1e-05 hsa:1642 DDB1, DDBA, UV-DDB1, XAP1, XPCE, XPE, XPE-BF; damage-... 47.8 1e-05 hsa:100290337 DNA damage-binding protein 1-like; K10610 DNA da... 47.8 1e-05 mmu:13194 Ddb1, 127kDa, AA408517, p127-Ddb1; damage specific D... 47.8 1e-05 sce:YML049C RSE1; Protein involved in pre-mRNA splicing; compo... 38.9 0.006 ath:AT4G05420 DDB1A; DDB1A (DAMAGED DNA BINDING PROTEIN 1A); D... 37.7 0.014 ath:AT4G21100 DDB1B; DDB1B (Damaged DNA Binding Protein 1 B); ... 37.0 0.019 cpv:cgd1_2840 contains a UVDDB domain that is present in CPSF_... 37.0 0.020 pfa:PFC0780w CPSF (cleavage and polyadenylation specific facto... 33.5 0.22 tgo:TGME49_067710 hypothetical protein 31.6 1.0 cel:F21G4.6 hypothetical protein 30.8 1.6 sce:YOR250C CLP1; Clp1p; K14399 polyribonucleotide 5'-hydroxyl... 30.8 1.8 ath:AT3G21280 UBP7; UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7); ubiq... 29.6 3.1 ath:AT5G47140 zinc finger (GATA type) family protein 29.6 3.6 ath:AT1G51710 UBP6; UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6); calm... 29.3 4.5 sce:YDL167C NRP1; Nrp1p 28.9 6.7 > tgo:TGME49_030960 splicing factor 3B subunit 3, putative ; K12830 splicing factor 3B subunit 3 Length=1233 Score = 224 bits (571), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 99/146 (67%), Positives = 124/146 (84%), Gaps = 0/146 (0%) Query 1 GKKRLLKKCEYKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60 G+KRLLKKCEYKNLP G+ F++V GDR+F GD+ ES+HV++Y+ + NLFYVL DD PRW Sbjct 990 GRKRLLKKCEYKNLPCGVAFIRVAGDRLFVGDVRESVHVMRYRLSENLFYVLADDVVPRW 1049 Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTV 120 LT+GEVLDYH+ VAADKFDS+FI RVPSEA++DE GD+TGL+LRGDT Y+TD C KL ++ Sbjct 1050 LTKGEVLDYHTFVAADKFDSVFICRVPSEAKEDELGDTTGLRLRGDTTYLTDKCFKLQSL 1109 Query 121 LQFHVGETVTGLRRATLSTGASEAIV 146 L FH+GE VT L RATL++ ASE+IV Sbjct 1110 LHFHIGEIVTALERATLTSAASESIV 1135 > cpv:cgd8_4240 possible spliceosome factor ; K12830 splicing factor 3B subunit 3 Length=1317 Score = 136 bits (342), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 64/147 (43%), Positives = 96/147 (65%), Gaps = 1/147 (0%) Query 1 GKKRLLKKCEYKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60 GKKRLL+K EY+N+P G+ ++KV DRIFAGD+S + V K+ +N F ++ D PRW Sbjct 1073 GKKRLLRKSEYRNIPQGLTWIKVVNDRIFAGDISNGVLVFKFNNTSNQFILVAKDPMPRW 1132 Query 61 LTRG-EVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDT 119 LT EVLDYH+I +DKFD+I + RVP+EA D ++ + H+++T Sbjct 1133 LTSACEVLDYHTIAVSDKFDNIIVSRVPAEASDDFSFVTSFTDNNNSQSSALMRTHQINT 1192 Query 120 VLQFHVGETVTGLRRATLSTGASEAIV 146 V QFH+G+ VT L+++ L+ ++EAI+ Sbjct 1193 VAQFHLGDIVTCLQKSQLTPTSAEAII 1219 > pfa:PFL1680w splicing factor 3b, subunit 3, 130kD, putative; K12830 splicing factor 3B subunit 3 Length=1329 Score = 135 bits (340), Expect = 4e-32, Method: Composition-based stats. Identities = 69/146 (47%), Positives = 99/146 (67%), Gaps = 0/146 (0%) Query 1 GKKRLLKKCEYKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60 GKK+LLKKCEYK++P IV +K+ G+RIFA D+ ES+ + Y N N ++ DD PRW Sbjct 1086 GKKKLLKKCEYKDIPEAIVSIKISGNRIFACDIRESVLIFFYDPNQNTLRLISDDIIPRW 1145 Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTV 120 +T E+LD+H+I+AADKFDS+FI RVP EA+QDE G + G+ + KL+ + Sbjct 1146 ITCSEILDHHTIMAADKFDSVFILRVPEEAKQDEYGITNKCWYGGEIMNSSTKNRKLEHM 1205 Query 121 LQFHVGETVTGLRRATLSTGASEAIV 146 + FH+GE VT +++ LS +SE I+ Sbjct 1206 MSFHIGEIVTSMQKVRLSPTSSECII 1231 > ath:AT3G55200 splicing factor, putative; K12830 splicing factor 3B subunit 3 Length=1214 Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 94/146 (64%), Gaps = 0/146 (0%) Query 1 GKKRLLKKCEYKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60 GKKRLL+KCE K P+ I+ ++ DRI+ GD+ ES H KY+ + N Y+ DD PRW Sbjct 971 GKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRW 1030 Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTV 120 LT +D+ ++ ADKF +++ R+P + ++ D TG K++ + + + +K+D + Sbjct 1031 LTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEI 1090 Query 121 LQFHVGETVTGLRRATLSTGASEAIV 146 +QFHVG+ VT L++A++ G SE+I+ Sbjct 1091 VQFHVGDVVTCLQKASMIPGGSESIM 1116 > ath:AT3G55220 splicing factor, putative Length=1214 Score = 128 bits (321), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 94/146 (64%), Gaps = 0/146 (0%) Query 1 GKKRLLKKCEYKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60 GKKRLL+KCE K P+ I+ ++ DRI+ GD+ ES H KY+ + N Y+ DD PRW Sbjct 971 GKKRLLRKCENKLFPNTIISIQTYRDRIYVGDIQESFHYCKYRRDENQLYIFADDCVPRW 1030 Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTV 120 LT +D+ ++ ADKF +++ R+P + ++ D TG K++ + + + +K+D + Sbjct 1031 LTASHHVDFDTMAGADKFGNVYFVRLPQDLSEEIEEDPTGGKIKWEQGKLNGAPNKVDEI 1090 Query 121 LQFHVGETVTGLRRATLSTGASEAIV 146 +QFHVG+ VT L++A++ G SE+I+ Sbjct 1091 VQFHVGDVVTCLQKASMIPGGSESIM 1116 > cel:K02F2.3 tag-203; Temporarily Assigned Gene name family member (tag-203); K12830 splicing factor 3B subunit 3 Length=1220 Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 57/146 (39%), Positives = 87/146 (59%), Gaps = 0/146 (0%) Query 1 GKKRLLKKCEYKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60 G+K+LL KCE KN P IV ++ G RI D ES+H ++Y+ N V DDT PR+ Sbjct 976 GQKKLLAKCENKNFPVSIVNIQSTGQRIIVSDSQESVHFLRYRKGDNQLVVFADDTTPRY 1035 Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTV 120 +T VLDYH++ ADKF ++ + R+P +D D T K D ++ + K++ V Sbjct 1036 VTCVCVLDYHTVAVADKFGNLAVVRLPERVNEDVQDDPTVSKSVWDRGWLNGASQKVELV 1095 Query 121 LQFHVGETVTGLRRATLSTGASEAIV 146 F +G+T+T L++ +L GA+EA+V Sbjct 1096 SNFFIGDTITSLQKTSLMPGANEALV 1121 > dre:406824 sf3b3, ik:tdsubc_2b2, wu:fb81f05, xx:tdsubc_2b2, zgc:55440; splicing factor 3b, subunit 3; K12830 splicing factor 3B subunit 3 Length=1217 Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 54/146 (36%), Positives = 87/146 (59%), Gaps = 0/146 (0%) Query 1 GKKRLLKKCEYKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60 GKK+LL+KCE K++P+ + + G R+ D+ ES+ ++Y+ N N + DDT PRW Sbjct 973 GKKKLLRKCENKHVPNLVTGIHTIGQRVIVSDVQESLFWVRYRRNENQLIIFADDTYPRW 1032 Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTV 120 +T +LDY ++ +ADKF +I + R+P D D TG K D + + K + + Sbjct 1033 ITTACLLDYDTMASADKFGNICVVRLPPNTSDDVDEDPTGNKALWDRGLLNGASQKAEII 1092 Query 121 LQFHVGETVTGLRRATLSTGASEAIV 146 + +H+GETV L++ TL G SE++V Sbjct 1093 INYHIGETVLSLQKTTLIPGGSESLV 1118 > mmu:101943 Sf3b3, 1810061H24Rik, 5730409A01Rik, AA409318, D8Ertd633e, RSE1, SAP130, mKIAA0017; splicing factor 3b, subunit 3; K12830 splicing factor 3B subunit 3 Length=1217 Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 85/146 (58%), Gaps = 0/146 (0%) Query 1 GKKRLLKKCEYKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60 GKK+LL+KCE K++ + I ++ G R+ D+ ES ++YK N N + DDT PRW Sbjct 973 GKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRW 1032 Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTV 120 +T +LDY ++ ADKF +I + R+P + D TG K D + + K + + Sbjct 1033 VTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVI 1092 Query 121 LQFHVGETVTGLRRATLSTGASEAIV 146 + +HVGETV L++ TL G SE++V Sbjct 1093 MNYHVGETVLSLQKTTLIPGGSESLV 1118 > hsa:23450 SF3B3, KIAA0017, RSE1, SAP130, SF3b130, STAF130; splicing factor 3b, subunit 3, 130kDa; K12830 splicing factor 3B subunit 3 Length=1217 Score = 117 bits (293), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 85/146 (58%), Gaps = 0/146 (0%) Query 1 GKKRLLKKCEYKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60 GKK+LL+KCE K++ + I ++ G R+ D+ ES ++YK N N + DDT PRW Sbjct 973 GKKKLLRKCENKHIANYISGIQTIGHRVIVSDVQESFIWVRYKRNENQLIIFADDTYPRW 1032 Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTV 120 +T +LDY ++ ADKF +I + R+P + D TG K D + + K + + Sbjct 1033 VTTASLLDYDTVAGADKFGNICVVRLPPNTNDEVDEDPTGNKALWDRGLLNGASQKAEVI 1092 Query 121 LQFHVGETVTGLRRATLSTGASEAIV 146 + +HVGETV L++ TL G SE++V Sbjct 1093 MNYHVGETVLSLQKTTLIPGGSESLV 1118 > bbo:BBOV_II004270 18.m06355; splicing factor 3b, subunit 3, 130kD; K12830 splicing factor 3B subunit 3 Length=1169 Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/142 (38%), Positives = 76/142 (53%), Gaps = 24/142 (16%) Query 1 GKKRLLKKCEYKNLPS-GIVFLKVCGDRIFAGDMSESIHVIK---YKANANLFYVLCDDT 56 GKK+LL K E++ G ++L G RIFAGD+ E I +++ Y A F + T Sbjct 943 GKKQLLLKAEHRTCSDHGFIWLNAVGSRIFAGDIREGIQILRIKFYSEEAAEFEWVGGAT 1002 Query 57 GPRWLTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHK 116 GPRWLT LDY +++A DKFDSIF+ RVP E T ++ + Sbjct 1003 GPRWLTSCAQLDYSTVIAGDKFDSIFVTRVPQEE---------------STRHI-----Q 1042 Query 117 LDTVLQFHVGETVTGLRRATLS 138 L+ V QFH+G+ T + +A LS Sbjct 1043 LENVCQFHLGDLPTAMDKAALS 1064 > tpv:TP04_0182 hypothetical protein; K12830 splicing factor 3B subunit 3 Length=1231 Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 50/150 (33%), Positives = 83/150 (55%), Gaps = 23/150 (15%) Query 1 GKKRLLKKCEYKNLPS-GIVFLKVCGDRIFAGDMSESIHVIK---YKANANLFYVLCDDT 56 G+K++L K E+++L S G + +KV G RI+ GD+ ES+ +++ Y + F + T Sbjct 1004 GRKQMLLKGEHRSLTSNGFMDIKVVGSRIYCGDIRESVQLLRLKFYGEDLGEFELTTTST 1063 Query 57 GPRWLTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHK 116 GPRWL+ E+LDY +++A DKFDS+F+ RVP ++ S + Sbjct 1064 GPRWLSTMELLDYSTVIAGDKFDSLFVSRVP---HNEDVVRSNYFEYHN----------- 1109 Query 117 LDTVLQFHVGETVTGLRRATLSTGASEAIV 146 QFH+G+ VT L+R ++ SE ++ Sbjct 1110 -----QFHLGDIVTSLQRVRINPIHSEVVL 1134 > xla:399026 ddb1, MGC68476, ddba, uv-ddb1, xap1, xpce, xpe, xpe-bf; damage-specific DNA binding protein 1, 127kDa; K10610 DNA damage-binding protein 1 Length=1140 Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 3/95 (3%) Query 1 GKKRLLKKCE-YKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPR 59 +K L +C Y N+ + ++LK GD I GD+ S+ ++ YK F + D P Sbjct 895 AEKELRTECNHYNNIMA--LYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPN 952 Query 60 WLTRGEVLDYHSIVAADKFDSIFIERVPSEARQDE 94 W++ E+LD + + A+ ++F+ + S A DE Sbjct 953 WMSAVEILDDDNFLGAENAFNLFVCQKDSAATTDE 987 > hsa:1642 DDB1, DDBA, UV-DDB1, XAP1, XPCE, XPE, XPE-BF; damage-specific DNA binding protein 1, 127kDa; K10610 DNA damage-binding protein 1 Length=1140 Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 10/140 (7%) Query 2 KKRLLKKCE-YKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60 +K L +C Y N+ + ++LK GD I GD+ S+ ++ YK F + D P W Sbjct 896 EKELRTECNHYNNIMA--LYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNW 953 Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGG---DSTGLKLRGDTAYMTDSCHKL 117 ++ E+LD + + A+ ++F+ + S A DE GL G+ ++ CH Sbjct 954 MSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGE--FVNVFCH-- 1009 Query 118 DTVLQFHVGETVTGLRRATL 137 +++ ++GET T + + L Sbjct 1010 GSLVMQNLGETSTPTQGSVL 1029 > hsa:100290337 DNA damage-binding protein 1-like; K10610 DNA damage-binding protein 1 Length=1140 Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 10/140 (7%) Query 2 KKRLLKKCE-YKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60 +K L +C Y N+ + ++LK GD I GD+ S+ ++ YK F + D P W Sbjct 896 EKELRTECNHYNNIMA--LYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNW 953 Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGG---DSTGLKLRGDTAYMTDSCHKL 117 ++ E+LD + + A+ ++F+ + S A DE GL G+ ++ CH Sbjct 954 MSAVEILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGE--FVNVFCH-- 1009 Query 118 DTVLQFHVGETVTGLRRATL 137 +++ ++GET T + + L Sbjct 1010 GSLVMQNLGETSTPTQGSVL 1029 > mmu:13194 Ddb1, 127kDa, AA408517, p127-Ddb1; damage specific DNA binding protein 1; K10610 DNA damage-binding protein 1 Length=1140 Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 3/94 (3%) Query 2 KKRLLKKCE-YKNLPSGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRW 60 +K L +C Y N+ + ++LK GD I GD+ S+ ++ YK F + D P W Sbjct 896 EKELRTECNHYNNIMA--LYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNW 953 Query 61 LTRGEVLDYHSIVAADKFDSIFIERVPSEARQDE 94 ++ E+LD + + A+ ++F+ + S A DE Sbjct 954 MSAVEILDDDNFLGAENAFNLFVCQKDSAATTDE 987 > sce:YML049C RSE1; Protein involved in pre-mRNA splicing; component of the pre-spliceosome; associates with U2 snRNA; involved in ER to Golgi transport; K12830 splicing factor 3B subunit 3 Length=1361 Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust. Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 9/98 (9%) Query 1 GKKRLLKKCEYKNLPSGIVFLKVCG------DRIFAGDMSESIHVIKYKANANLFYVLCD 54 GKK+LL++ + + + K+ +R+ GD+ ES+ + + N+F D Sbjct 1055 GKKQLLRRSVTQ---TPVSITKIVSMHQWNYERLAVGDIHESVTLFIWDPAGNVFIPYVD 1111 Query 55 DTGPRWLTRGEVLDYHSIVAADKFDSIFIERVPSEARQ 92 D+ R +T + LD +++ AD++ + + R P E + Sbjct 1112 DSVKRHVTVLKFLDEATVIGADRYGNAWTLRSPPECEK 1149 > ath:AT4G05420 DDB1A; DDB1A (DAMAGED DNA BINDING PROTEIN 1A); DNA binding / protein binding; K10610 DNA damage-binding protein 1 Length=1067 Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust. Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 18/119 (15%) Query 19 VFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRWLTRGEVLDYHSIVAADKF 78 ++++ GD I GD+ +SI ++ YK D W++ E+LD + A+ Sbjct 850 LYVQTRGDFIVVGDLMKSISLLLYKHEEGAIEERARDYNANWMSAVEILDDDIYLGAENN 909 Query 79 DSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTVLQFHVGETVTGLRRATL 137 ++ + SE DE RG +L+ V ++H+GE V R +L Sbjct 910 FNLLTVKKNSEGATDEE--------RG----------RLEVVGEYHLGEFVNRFRHGSL 950 > ath:AT4G21100 DDB1B; DDB1B (Damaged DNA Binding Protein 1 B); damaged DNA binding / protein binding; K10610 DNA damage-binding protein 1 Length=1088 Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust. Identities = 27/119 (22%), Positives = 49/119 (41%), Gaps = 18/119 (15%) Query 19 VFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRWLTRGEVLDYHSIVAADKF 78 ++++ GD I GD+ +SI ++ YK D W+T E+L+ + D Sbjct 871 LYVQTRGDFIAVGDLMKSISLLIYKHEEGAIEERARDYNANWMTAVEILNDDIYLGTDNC 930 Query 79 DSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTVLQFHVGETVTGLRRATL 137 +IF + +E DE +++ V ++H+GE V R +L Sbjct 931 FNIFTVKKNNEGATDE------------------ERARMEVVGEYHIGEFVNRFRHGSL 971 > cpv:cgd1_2840 contains a UVDDB domain that is present in CPSF_A and damage specific DNA binding protein 1 Length=1495 Score = 37.0 bits (84), Expect = 0.020, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 19/139 (13%) Query 6 LKKCEYKNLPSGIVFLKVC-GDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRWLTRG 64 LK+ E + IVF+K+ G+ I GD+ S+ + ++ F+ +C D W+ G Sbjct 1189 LKRKETYCTHTMIVFIKILNGEYILVGDLMRSVGLWEFDRYTGKFHEVCRDNSIAWVVEG 1248 Query 65 EVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTVLQFH 124 L + +D+ ++ RV E D Y + SC + H Sbjct 1249 IFLSKDMYLISDENRNL---RVLMRTLNPE----------NDETYTSLSC-----IAHLH 1290 Query 125 VGETVTGLRRATLSTGASE 143 VGE++T ++ + E Sbjct 1291 VGESITTFQQGKFTQAYPE 1309 > pfa:PFC0780w CPSF (cleavage and polyadenylation specific factor), subunit A, putative Length=2870 Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%) Query 16 SGIVFLKVCGDRIFAGDMSESIHVIKYKANANLFYVLCDDTGPRWLTRGEVLDYHSIVAA 75 S I+ + V GD I GD+ S+ +++Y + + +C D W T L IV + Sbjct 2634 SWIMTVDVYGDYIVVGDIMTSVTILQYDYENSQLFEVCRDYSNIWCTSLCALSKSHIVVS 2693 Query 76 DKFDSIFI 83 D D+ FI Sbjct 2694 D-MDANFI 2700 > tgo:TGME49_067710 hypothetical protein Length=2136 Score = 31.6 bits (70), Expect = 1.0, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 6/91 (6%) Query 31 GDMSESIHVIKYKANANLFYVLCDDTGPRWLTRGEVL--DYHSIVAADKFDSIFIERVP- 87 GDM S ++++ N F + DT W L + H + AD+ + +ER Sbjct 1830 GDMVASAVLLRFSPKDNAFKEIARDTNACWTLAVSCLSPNLHYLADADR-NIWLLERASL 1888 Query 88 --SEARQDEGGDSTGLKLRGDTAYMTDSCHK 116 SE R++EG ST +T CH+ Sbjct 1889 LGSEGRREEGVPSTRPNFPAETVEECSICHQ 1919 > cel:F21G4.6 hypothetical protein Length=2022 Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust. Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 7/95 (7%) Query 51 VLCDDTGPRWLTRGEVLDYHSIVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYM 110 +LC+ P ++ +L V + +F E+VP +R D+ L+ T + Sbjct 624 LLCEARMPTYVKMTAIL--RESVNSPEFSH---EKVPKLSRMHWNSDTLPAVLQVMTVSL 678 Query 111 TDSCHKLDTVLQFHVGETVTGL--RRATLSTGASE 143 +DS K D FHVG +V R + GA+E Sbjct 679 SDSHSKEDCYHGFHVGMSVLNWVYRNVFIVRGAAE 713 > sce:YOR250C CLP1; Clp1p; K14399 polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78] Length=445 Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust. Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 5/54 (9%) Query 32 DMSESIHVIKYKANANLFYVLCDDTGPRW----LTRGEVLDYHSIVAADKFDSI 81 +++E H+I+ K N N+ VLC +T P W T G L ++I K D + Sbjct 261 NLAELHHIIE-KLNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGV 313 > ath:AT3G21280 UBP7; UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7); ubiquitin thiolesterase/ ubiquitin-specific protease; K11843 ubiquitin carboxyl-terminal hydrolase 14 [EC:3.1.2.15] Length=532 Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 0/52 (0%) Query 72 IVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTVLQF 123 IV A + +F+E +P E + G S GL G+T YM + L +V + Sbjct 132 IVKAPEKGPVFMEDLPEEQQAANLGYSAGLVNLGNTCYMNSTMQCLISVPEL 183 > ath:AT5G47140 zinc finger (GATA type) family protein Length=470 Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 0/34 (0%) Query 51 VLCDDTGPRWLTRGEVLDYHSIVAADKFDSIFIE 84 VLC+ G RW T+G +++Y + A + D IE Sbjct 27 VLCNACGSRWRTKGSLVNYTPLHARAEGDETEIE 60 > ath:AT1G51710 UBP6; UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6); calmodulin binding / ubiquitin-specific protease; K11843 ubiquitin carboxyl-terminal hydrolase 14 [EC:3.1.2.15] Length=443 Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust. Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 0/52 (0%) Query 72 IVAADKFDSIFIERVPSEARQDEGGDSTGLKLRGDTAYMTDSCHKLDTVLQF 123 IV A + +F E +P EA G S GL G+T YM + L +V + Sbjct 38 IVKAPEKAIVFAEDLPEEALATNLGYSAGLVNLGNTCYMNSTVQCLKSVPEL 89 > sce:YDL167C NRP1; Nrp1p Length=719 Score = 28.9 bits (63), Expect = 6.7, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 0/32 (0%) Query 9 CEYKNLPSGIVFLKVCGDRIFAGDMSESIHVI 40 C Y N +V L+ G + +GD SE+ H I Sbjct 590 CTYHNFAKNVVCLRCGGPKSISGDASETNHYI 621 Lambda K H 0.320 0.137 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2872883024 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40