bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_1075_orf1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_064450 DNA topoisomerase III beta-1, putative (EC:5... 231 7e-61
xla:398564 top3b, MGC53016; topoisomerase (DNA) III beta (EC:5... 194 1e-49
dre:100329289 topoisomerase (DNA) III beta-like; K03165 DNA to... 191 1e-48
hsa:8940 TOP3B, FLJ39376; topoisomerase (DNA) III beta (EC:5.9... 181 2e-45
mmu:21976 Top3b; topoisomerase (DNA) III beta (EC:5.99.1.2); K... 178 9e-45
ath:AT2G32000 DNA topoisomerase family protein; K03165 DNA top... 172 6e-43
bbo:BBOV_II000360 18.m06014; DNA topoisomerase; K03165 DNA top... 169 3e-42
cel:Y48C3A.14 hypothetical protein; K03165 DNA topoisomerase I... 169 3e-42
cpv:cgd6_2390 DNA topoisomerase III beta-1 ; K03165 DNA topois... 166 3e-41
ath:AT5G63920 DNA topoisomerase III alpha, putative; K03165 DN... 125 1e-28
dre:560212 top3a; topoisomerase (DNA) III alpha; K03165 DNA to... 117 1e-26
xla:444125 top3a, MGC80537, xtop3a; topoisomerase (DNA) III al... 110 3e-24
mmu:21975 Top3a, MGC106383; topoisomerase (DNA) III alpha (EC:... 109 5e-24
hsa:7156 TOP3A, TOP3; topoisomerase (DNA) III alpha (EC:5.99.1... 109 6e-24
tgo:TGME49_026480 DNA topoisomerase III alpha, putative (EC:5.... 104 2e-22
cpv:cgd5_1180 DNA topoisomerase III ; K03165 DNA topoisomerase... 99.0 8e-21
bbo:BBOV_III001510 17.m07153; DNA topoisomerase family protein... 98.2 1e-20
cel:Y56A3A.27 top-3; TOPoisomerase family member (top-3); K031... 90.9 2e-18
pfa:PF13_0251 DNA topoisomerase III, putative (EC:5.99.1.2); K... 83.6 3e-16
sce:YLR234W TOP3, EDR1; DNA Topoisomerase III, conserved prote... 82.8 6e-16
tpv:TP03_0692 DNA topoisomerase III; K03165 DNA topoisomerase ... 77.8 2e-14
eco:b1274 topA, asuA?, ECK1268, JW1266, supX; DNA topoisomeras... 35.8 0.091
ath:AT4G31210 DNA topoisomerase family protein 30.8 2.7
ath:AT5G51810 GA20OX2 (GIBBERELLIN 20 OXIDASE 2); gibberellin ... 30.0 4.3
mmu:228684 Sel1l2, Gm118; sel-1 suppressor of lin-12-like 2 (C... 30.0 4.4
hsa:80343 SEL1L2, C20orf50, DJ842G6.2, DKFZp434C1826, FLJ22324... 29.3 7.2
mmu:195209 Gm22; predicted gene 22 29.3
> tgo:TGME49_064450 DNA topoisomerase III beta-1, putative (EC:5.99.1.2);
K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=841
Score = 231 bits (590), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 109/163 (66%), Positives = 128/163 (78%), Gaps = 1/163 (0%)
Query 19 QIWRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLKIGVAFTRFQTQYFQGKYG 78
+IWRA FSALAP DIQ+AM+ LG+PNK+E+D+VDARQELDLK+G AFTRFQTQYFQGKYG
Sbjct 128 EIWRAKFSALAPADIQQAMRTLGTPNKNEADSVDARQELDLKVGCAFTRFQTQYFQGKYG 187
Query 79 DLDSSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQIQPIVRVGEQELTLEWARGQVFD 138
DLD+SL+SYGPCQTPTLQ CV R D I AF+PE +Y + +RVGEQEL LEW RGQVFD
Sbjct 188 DLDASLVSYGPCQTPTLQFCVQRYDDIHAFQPETFYTLDTSIRVGEQELFLEWERGQVFD 247
Query 139 RVVAQMFHFIVQS-ATFAVVSTTKQTEEVLPMPQALNTVALLK 180
V A + IV + AVV + EE +P PQALNTV +LK
Sbjct 248 SVTAHTYKDIVSARGAVAVVVDVTEKEEKMPRPQALNTVNMLK 290
> xla:398564 top3b, MGC53016; topoisomerase (DNA) III beta (EC:5.99.1.2);
K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=858
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 94/165 (56%), Positives = 123/165 (74%), Gaps = 1/165 (0%)
Query 17 QQQIWRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLKIGVAFTRFQTQYFQGK 76
++ ++RA FS++ TDI AM +LG PNK+E+ +VDARQELDL+IG AFTRFQT+YFQGK
Sbjct 144 ERTVYRAKFSSITDTDILNAMNRLGEPNKNEALSVDARQELDLRIGCAFTRFQTKYFQGK 203
Query 77 YGDLDSSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQIQPIVRVG-EQELTLEWARGQ 135
YG+LDSSLIS+GPCQTPTL CV R D IQ+F+PE Y+ +Q V G E L+L+W R +
Sbjct 204 YGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQVKVSHGQEHPLSLDWDRVR 263
Query 136 VFDRVVAQMFHFIVQSATFAVVSTTKQTEEVLPMPQALNTVALLK 180
VFDR +AQMF I ++A A V + + E+ PQALNTV +L+
Sbjct 264 VFDREIAQMFINITKTAKEAQVESVSKKEKAKQRPQALNTVEMLR 308
> dre:100329289 topoisomerase (DNA) III beta-like; K03165 DNA
topoisomerase III [EC:5.99.1.2]
Length=861
Score = 191 bits (485), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 92/173 (53%), Positives = 124/173 (71%), Gaps = 1/173 (0%)
Query 9 LVKPPNKQQQQIWRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLKIGVAFTRF 68
++ P ++ ++RA FS++ TDI AM +LG PNK+E+ +VDARQELDL+IG AFTRF
Sbjct 136 VMNKPYGNERTVYRAKFSSITDTDICNAMNRLGEPNKNEALSVDARQELDLRIGCAFTRF 195
Query 69 QTQYFQGKYGDLDSSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQIQPIVRVGEQE-L 127
QT+YFQGKYG+LDSSLIS+GPCQTPTL CV R D IQ+F+PE Y+ +Q V G+ L
Sbjct 196 QTKYFQGKYGNLDSSLISFGPCQTPTLGFCVERHDKIQSFKPEAYWVVQAKVFKGKDSPL 255
Query 128 TLEWARGQVFDRVVAQMFHFIVQSATFAVVSTTKQTEEVLPMPQALNTVALLK 180
TL+W R +VFDR + QMF + ++A A V + + E+ P ALNTV +L+
Sbjct 256 TLDWDRVRVFDRDIGQMFVNMAKTAKEARVDSVTKKEKAKQRPLALNTVEMLR 308
> hsa:8940 TOP3B, FLJ39376; topoisomerase (DNA) III beta (EC:5.99.1.2);
K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=862
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 89/165 (53%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
Query 17 QQQIWRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLKIGVAFTRFQTQYFQGK 76
++ ++RA FS++ TDI AM LG P+ +E+ +VDARQELDL+IG AFTRFQT+YFQGK
Sbjct 144 EKTVFRARFSSITDTDICNAMACLGEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGK 203
Query 77 YGDLDSSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQIQPIVRVG-EQELTLEWARGQ 135
YGDLDSSLIS+GPCQTPTL CV R D IQ+F+PE Y+ +Q V ++ L L+W R +
Sbjct 204 YGDLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVNTDKDRSLLLDWDRVR 263
Query 136 VFDRVVAQMFHFIVQSATFAVVSTTKQTEEVLPMPQALNTVALLK 180
VFDR +AQMF + + A V T + E+ P ALNTV +L+
Sbjct 264 VFDREIAQMFLNMTKLEKEAQVEATSRKEKAKQRPLALNTVEMLR 308
> mmu:21976 Top3b; topoisomerase (DNA) III beta (EC:5.99.1.2);
K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=862
Score = 178 bits (451), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/165 (53%), Positives = 117/165 (70%), Gaps = 1/165 (0%)
Query 17 QQQIWRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLKIGVAFTRFQTQYFQGK 76
++ ++RA FS++ TDI AM +L P+ +E+ +VDARQELDL+IG AFTRFQT+YFQGK
Sbjct 144 EKTVFRARFSSITDTDICNAMTRLSEPDHNEALSVDARQELDLRIGCAFTRFQTKYFQGK 203
Query 77 YGDLDSSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQIQPIVRVGEQE-LTLEWARGQ 135
YGDLDSSLIS+GPCQTPTL CV R D IQ+F+PE Y+ +Q V ++E L L+W R +
Sbjct 204 YGDLDSSLISFGPCQTPTLGFCVERHDKIQSFKPETYWVLQAKVHTDKEESLLLDWDRVR 263
Query 136 VFDRVVAQMFHFIVQSATFAVVSTTKQTEEVLPMPQALNTVALLK 180
VFD +AQMF + + A V T + E+ P ALNTV +L+
Sbjct 264 VFDWEIAQMFLNMTKLEKEAWVEATSRKEKAKQRPLALNTVEMLR 308
> ath:AT2G32000 DNA topoisomerase family protein; K03165 DNA topoisomerase
III [EC:5.99.1.2]
Length=838
Score = 172 bits (436), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 83/164 (50%), Positives = 110/164 (67%), Gaps = 0/164 (0%)
Query 17 QQQIWRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLKIGVAFTRFQTQYFQGK 76
+++++RA FS++ DI KAM L PN+DE+ AVDARQE+DLK+GVAF+RFQT YFQGK
Sbjct 113 KRKVYRARFSSVTEKDISKAMDNLVEPNRDEALAVDARQEIDLKVGVAFSRFQTSYFQGK 172
Query 77 YGDLDSSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQIQPIVRVGEQELTLEWARGQV 136
Y +LD +ISYGPCQTPTL CV R I F+PE+++ ++P +R EL LEW R ++
Sbjct 173 YQNLDCRVISYGPCQTPTLGFCVQRYMHINTFKPEKFWALRPYIRKDGYELQLEWERRRL 232
Query 137 FDRVVAQMFHFIVQSATFAVVSTTKQTEEVLPMPQALNTVALLK 180
FD A +F +V A V + +EV P LNTV LLK
Sbjct 233 FDLEAATVFQKLVVEGRTAKVMDVSEKQEVKGRPAGLNTVNLLK 276
> bbo:BBOV_II000360 18.m06014; DNA topoisomerase; K03165 DNA topoisomerase
III [EC:5.99.1.2]
Length=878
Score = 169 bits (429), Expect = 3e-42, Method: Composition-based stats.
Identities = 88/191 (46%), Positives = 118/191 (61%), Gaps = 14/191 (7%)
Query 1 VLDLCKAHLVKPPNKQQQQIWRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLK 60
V+ +C HLVK +KQ I+RA FSAL DI +A+ L PNK ESDAV ARQ +DL+
Sbjct 145 VIRVCHQHLVKIGSKQ---IFRARFSALTRADILRAVDNLCDPNKLESDAVRARQTIDLR 201
Query 61 IGVAFTRFQTQYFQGKYGDLDSSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQIQPIV 120
+G AFTRFQT +FQGKYGDLDS+ ISYGPCQTPTL CV R + I F+ E YY++ +
Sbjct 202 VGCAFTRFQTTFFQGKYGDLDSTCISYGPCQTPTLFFCVDRYNAIARFQEEPYYKLICDI 261
Query 121 RVGEQELTLEWARGQVFDRVVAQMFHFIVQSATF-----------AVVSTTKQTEEVLPM 169
Q + W RG++FD+ VA++F +V+ + V++ +
Sbjct 262 SYEGQYIPFTWNRGRIFDKSVARIFQQLVRCEKYYNILQLMGANKGVLTDIVTKRSINSS 321
Query 170 PQALNTVALLK 180
P+ALNTV +LK
Sbjct 322 PKALNTVTMLK 332
> cel:Y48C3A.14 hypothetical protein; K03165 DNA topoisomerase
III [EC:5.99.1.2]
Length=855
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/182 (46%), Positives = 118/182 (64%), Gaps = 2/182 (1%)
Query 1 VLDLCKAHLVKPPNKQQQQIWRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLK 60
V+D K + K ++RAHFSA+ DI+ AM+ LG P+++ S +VDARQELDL+
Sbjct 129 VIDAVKCAMFKNRQDFMSDVYRAHFSAITEKDIKAAMRNLGRPDQNMSHSVDARQELDLR 188
Query 61 IGVAFTRFQTQYFQGKYGDLDSSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQIQPIV 120
IG +FTRFQT++FQGKYGDLDS++ISYGPCQTPTL CV R D I F+PE+Y+ ++
Sbjct 189 IGCSFTRFQTKFFQGKYGDLDSNVISYGPCQTPTLGFCVTRHDQIVQFKPEQYWVLKTNF 248
Query 121 RVGE--QELTLEWARGQVFDRVVAQMFHFIVQSATFAVVSTTKQTEEVLPMPQALNTVAL 178
+ Q + EW RG++FD VA++F ++ +V + E P ALNTV L
Sbjct 249 TTSDDGQIFSPEWQRGRIFDAEVARVFVDRIKKCHTGLVLDVSKKEARKERPCALNTVEL 308
Query 179 LK 180
++
Sbjct 309 MR 310
> cpv:cgd6_2390 DNA topoisomerase III beta-1 ; K03165 DNA topoisomerase
III [EC:5.99.1.2]
Length=835
Score = 166 bits (421), Expect = 3e-41, Method: Composition-based stats.
Identities = 85/170 (50%), Positives = 116/170 (68%), Gaps = 7/170 (4%)
Query 16 QQQQIWRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLKIGVAFTRFQTQYFQG 75
Q+ I+RA FS+++P DI AMK L PNK+ESDAVD RQELDLKIGVAF+R QT+Y +
Sbjct 139 QRDWIFRAKFSSISPGDIFFAMKNLTFPNKNESDAVDVRQELDLKIGVAFSRLQTKYLKS 198
Query 76 KYGDLD-SSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQIQPIVRVGEQELTLEWARG 134
K+GD + SS+ISYGPCQTPTL V R D+I +F PE+YY I + Q++ L W+R
Sbjct 199 KFGDFNKSSIISYGPCQTPTLFFTVQRRDSINSFIPEKYYTISATLSKDSQDINLIWSRS 258
Query 135 QVFDRVVAQMFHFIVQS----ATFAVVSTTKQTEEVLPMPQALNTVALLK 180
+VF+ VA F ++Q+ + V T+K + + P+P LNTV++LK
Sbjct 259 RVFELQVANCFLQLIQNKKPLSARVVDITSKNSRRIRPLP--LNTVSMLK 306
> ath:AT5G63920 DNA topoisomerase III alpha, putative; K03165
DNA topoisomerase III [EC:5.99.1.2]
Length=926
Score = 125 bits (313), Expect = 1e-28, Method: Composition-based stats.
Identities = 75/186 (40%), Positives = 102/186 (54%), Gaps = 12/186 (6%)
Query 1 VLDLCKAHLVKPPNKQQQQIWRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLK 60
V+D+C+A K I RAHFSAL DI +A++ L PN+ ++AVDARQE+DL+
Sbjct 135 VVDVCRA------VKHNLFIRRAHFSALIDRDIHEAVQNLRDPNQLFAEAVDARQEIDLR 188
Query 61 IGVAFTRFQTQYFQGKY-----GDLDSSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQ 115
IG +FTRFQT + ++ G+ S +ISYGPCQ PTL V R IQA PEE++
Sbjct 189 IGASFTRFQTMLLRDRFAIDSTGEERSRVISYGPCQFPTLGFIVERYWEIQAHEPEEFWT 248
Query 116 IQPIVRVGEQELTLEWARGQVFDRVVAQ-MFHFIVQSATFAVVSTTKQTEEVLPMPQALN 174
I + E T W RG +FD A ++ V+ T V++ E P LN
Sbjct 249 INCSHQSEEGLATFNWMRGHLFDYASAVILYEMCVEEPTATVMNVPHPRERFKYPPYPLN 308
Query 175 TVALLK 180
T+ L K
Sbjct 309 TIELEK 314
> dre:560212 top3a; topoisomerase (DNA) III alpha; K03165 DNA
topoisomerase III [EC:5.99.1.2]
Length=998
Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 73/184 (39%), Positives = 107/184 (58%), Gaps = 12/184 (6%)
Query 1 VLDLCKAHLVKPPNKQQQQIWRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLK 60
++D+CKA VKP Q++RA FS + P I++A + L P+ + SDAVD RQELDL+
Sbjct 157 IIDVCKA--VKP----NIQVFRARFSEITPNSIRRACETLTEPDINVSDAVDVRQELDLR 210
Query 61 IGVAFTRFQTQYFQGKYGD-LDSSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQIQPI 119
IG +FTRFQT Q + + L LISYG CQ PTL V R IQAF PE +++I+ +
Sbjct 211 IGASFTRFQTLRLQKIFPESLSDQLISYGSCQFPTLGFVVERFKAIQAFIPETFFKIKVV 270
Query 120 VRVGEQE-LTLEWARGQVFDRVVAQ-MFHFIVQSATFAVVS-TTKQTEEVLPMPQALNTV 176
E+E + W R ++F+ ++ ++ V+S T+K + P+P L+TV
Sbjct 271 HEPNEEESVEFNWKRHRLFNHTACLVLYQMCMEEPMAKVISVTSKPKSKWRPLP--LDTV 328
Query 177 ALLK 180
L K
Sbjct 329 ELEK 332
> xla:444125 top3a, MGC80537, xtop3a; topoisomerase (DNA) III
alpha (EC:5.99.1.2); K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=1022
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 96/181 (53%), Gaps = 7/181 (3%)
Query 1 VLDLCKAHLVKPPNKQQQQIWRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLK 60
++ +CK+ VKP Q++RA FS + P I+ A + L P+++ +DAVD R ELDL+
Sbjct 165 IIHVCKS--VKP----NLQVFRARFSEITPRSIRMACEHLVQPDQNINDAVDVRTELDLR 218
Query 61 IGVAFTRFQTQYFQGKYGD-LDSSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQIQPI 119
IG AFTRFQT Q + L + LISYG CQ PTL V R IQAF PE +Y+I+
Sbjct 219 IGAAFTRFQTLRLQKIFPSVLSNQLISYGSCQFPTLGFVVERFKAIQAFIPETFYKIKVT 278
Query 120 VRVGEQELTLEWARGQVFDRVVAQMFHFIVQSATFAVVSTTKQTEEVLPMPQALNTVALL 179
+ + W R ++F+ + + I A V + P AL+TV L
Sbjct 279 HEHEDGLVEFSWKRNRLFNHTACLVLYQICMEDPMATVMEVGSKPKSKWRPVALDTVELE 338
Query 180 K 180
K
Sbjct 339 K 339
> mmu:21975 Top3a, MGC106383; topoisomerase (DNA) III alpha (EC:5.99.1.2);
K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=1003
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/181 (37%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query 1 VLDLCKAHLVKPPNKQQQQIWRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLK 60
++ +CKA VKP ++ RA FS + P ++ A + L P++ SDAVD RQELDL+
Sbjct 160 IIHVCKA--VKP----NLRVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query 61 IGVAFTRFQTQYFQGKYGD-LDSSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQIQPI 119
IG AFTRFQT Q + + L LISYG CQ PTL V R IQAF PE +++I+
Sbjct 214 IGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEVFHKIKVT 273
Query 120 VRVGEQELTLEWARGQVFDRVVAQMFHFIVQSATFAVVSTTKQTEEVLPMPQALNTVALL 179
+ + W R ++F+ + + + A V + + PQAL+TV L
Sbjct 274 HDHKDGTVEFNWKRYRLFNHTACLVLYQLCMEDPMATVVEVRSKPKSKWRPQALDTVELE 333
Query 180 K 180
K
Sbjct 334 K 334
> hsa:7156 TOP3A, TOP3; topoisomerase (DNA) III alpha (EC:5.99.1.2);
K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=1001
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/181 (38%), Positives = 97/181 (53%), Gaps = 7/181 (3%)
Query 1 VLDLCKAHLVKPPNKQQQQIWRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLK 60
++ +CKA VKP Q+ RA FS + P ++ A + L P++ SDAVD RQELDL+
Sbjct 160 IIHVCKA--VKP----NLQVLRARFSEITPHAVRTACENLTEPDQRVSDAVDVRQELDLR 213
Query 61 IGVAFTRFQTQYFQGKYGD-LDSSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQIQPI 119
IG AFTRFQT Q + + L LISYG CQ PTL V R IQAF PE +++I+
Sbjct 214 IGAAFTRFQTLRLQRIFPEVLAEQLISYGSCQFPTLGFVVERFKAIQAFVPEIFHRIKVT 273
Query 120 VRVGEQELTLEWARGQVFDRVVAQMFHFIVQSATFAVVSTTKQTEEVLPMPQALNTVALL 179
+ + W R ++F+ + + + A V + + PQAL+TV L
Sbjct 274 HDHKDGIVEFNWKRHRLFNHTACLVLYQLCVEDPMATVVEVRSKPKSKWRPQALDTVELE 333
Query 180 K 180
K
Sbjct 334 K 334
> tgo:TGME49_026480 DNA topoisomerase III alpha, putative (EC:5.99.1.2);
K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=677
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 59/171 (34%), Positives = 93/171 (54%), Gaps = 10/171 (5%)
Query 19 QIWRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLKIGVAFTRFQTQYFQGKYG 78
++RA FSAL D+++A + L +P++++SDAVD R E+DL+IG +FTRF T ++ +
Sbjct 143 NVFRAVFSALTKADLERACRTLQAPDRNQSDAVDTRSEIDLRIGASFTRFLTMRYRSRV- 201
Query 79 DLDSSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQIQPIVRVGEQE---------LTL 129
L S ISYGPCQ+PTL V R ++ F E Y+ I+ + + E +
Sbjct 202 KLPSPTISYGPCQSPTLGFVVSRFVEVENFVREAYWTIRVTISKPDDEKGANAPPLSIDF 261
Query 130 EWARGQVFDRVVAQMFHFIVQSATFAVVSTTKQTEEVLPMPQALNTVALLK 180
W R ++FD++ + + + A V+ + TE P L TV L K
Sbjct 262 TWERQRLFDQLAVLVLYEMCLENPEATVTDVRGTERTKQRPVPLCTVELHK 312
> cpv:cgd5_1180 DNA topoisomerase III ; K03165 DNA topoisomerase
III [EC:5.99.1.2]
Length=814
Score = 99.0 bits (245), Expect = 8e-21, Method: Composition-based stats.
Identities = 62/176 (35%), Positives = 95/176 (53%), Gaps = 25/176 (14%)
Query 21 WRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLKIGVAFTRFQTQYFQGKYGDL 80
+RAHFSA+ +I AMK+L PN+ SDAV+AR+E+DL++G +FTRF T + + +
Sbjct 189 FRAHFSAITKFEINNAMKKLSFPNRALSDAVEARKEIDLRVGSSFTRFLTLRYSRLF-PI 247
Query 81 DSSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQIQPIVRVGEQE--------LTLEWA 132
+SYG CQ PTL V R I FR E+ + I V++ E + EW
Sbjct 248 PERTLSYGTCQFPTLGFVVSRYKKIINFREEDEWTITLEVKMKIYEGNNKEMSNVIFEWE 307
Query 133 RGQVFDRVVAQMFHFIVQSATFAVVSTTKQTEEVL--------PMPQALNTVALLK 180
RG++FD +F FI+ + ++ + +E++ P+P LNTV + K
Sbjct 308 RGKLFD----NLFTFIIYET--CIENSNARIKEIVNNKILKRKPLP--LNTVEMTK 355
> bbo:BBOV_III001510 17.m07153; DNA topoisomerase family protein;
K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=633
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 52/150 (34%), Positives = 88/150 (58%), Gaps = 3/150 (2%)
Query 32 DIQKAMKQLGSPNKDESDAVDARQELDLKIGVAFTRFQTQYFQGKYGDLDSSLISYGPCQ 91
+I+ A L PN + + AV+ARQE+DL+IG + TRF T ++ + D +S ++SYGPCQ
Sbjct 164 EIETACATLREPNPNLAQAVEARQEIDLRIGSSMTRFMTTRYRERI-DTESKVLSYGPCQ 222
Query 92 TPTLQLCVHRSDTIQAFRPEEYYQIQPIVRVGEQELTLEWARGQVFDRV-VAQMFHFIVQ 150
PTL V R I++F+PE ++ IQ + G ++ W R ++FDR+ V ++ ++
Sbjct 223 LPTLGFVVDRFFKIESFQPESFWSIQVFIESGGKDYLFRWDRVKLFDRLAVLTLYEACLE 282
Query 151 SATFAVVSTTKQTEEVLPMPQALNTVALLK 180
+ V + ++ + P P L+TV + K
Sbjct 283 NPMAKVTHVSNRSTKRYP-PLPLDTVEMHK 311
> cel:Y56A3A.27 top-3; TOPoisomerase family member (top-3); K03165
DNA topoisomerase III [EC:5.99.1.2]
Length=759
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/168 (35%), Positives = 85/168 (50%), Gaps = 9/168 (5%)
Query 20 IWRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLKIGVAFTRFQTQYFQGKYGD 79
I+RA FS + I +A + L ++ AVD R ELDL+IG AFTR QT + + ++ D
Sbjct 141 IFRARFSEITKAAITRAARNLIRLDEKTVAAVDCRSELDLRIGSAFTRLQTLHLRNRFRD 200
Query 80 L-----DSSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQIQPIVRVGEQELTLE--WA 132
L S +ISYG CQ PTL R I+ F E ++++ IV + +E W
Sbjct 201 LLGQNDTSQVISYGSCQFPTLGFVTDRYKMIENFVSEPFWKL--IVEHTRESHKVEFLWD 258
Query 133 RGQVFDRVVAQMFHFIVQSATFAVVSTTKQTEEVLPMPQALNTVALLK 180
R ++FDR + H + A V + + PQAL+TV L K
Sbjct 259 RNRLFDRDTVDILHDECKETKEAHVEKVAKKPKSKWRPQALDTVELEK 306
> pfa:PF13_0251 DNA topoisomerase III, putative (EC:5.99.1.2);
K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=710
Score = 83.6 bits (205), Expect = 3e-16, Method: Composition-based stats.
Identities = 45/101 (44%), Positives = 64/101 (63%), Gaps = 7/101 (6%)
Query 20 IWRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLKIGVAFTRFQTQYFQGKYGD 79
I RA FSA+ DI A+ L PNK+ + +VD R+E+DL++G FTRF T +Y +
Sbjct 143 IHRAQFSAVTEKDIIHAINNLKEPNKNLAYSVDVRREIDLRMGSIFTRFMTI----RYIE 198
Query 80 L---DSSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQIQ 117
L ++S+ISYGPCQ PTL V+R I+ F+ E Y+ I+
Sbjct 199 LVKHETSIISYGPCQFPTLGFVVNRYLDIKNFKNEYYWSIK 239
> sce:YLR234W TOP3, EDR1; DNA Topoisomerase III, conserved protein
that functions in a complex with Sgs1p and Rmi1p to relax
single-stranded negatively-supercoiled DNA preferentially,
involved in telomere stability and regulation of mitotic recombination
(EC:5.99.1.2); K03165 DNA topoisomerase III [EC:5.99.1.2]
Length=656
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 87/187 (46%), Gaps = 24/187 (12%)
Query 16 QQQQIWRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLKIGVAFTRFQTQYFQG 75
Q Q++RA FS L I A + + AV R E+DL+ GV FTR T+ +
Sbjct 144 QNDQVYRAVFSHLERQHILNAARNPSRLDMKSVHAVGTRIEIDLRAGVTFTRLLTETLRN 203
Query 76 KYGD----------------LDSSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQIQPI 119
K + DS ++SYG CQ PTL V R + I+ F PEE++ IQ +
Sbjct 204 KLRNQATMTKDGAKHRGGNKNDSQVVSYGTCQFPTLGFVVDRFERIRNFVPEEFWYIQLV 263
Query 120 VRVGEQ--ELTLEWARGQVFDRVVAQMFH--FIVQSATFAVVS--TTKQTEEVLPMPQAL 173
V + T +W RG +FDR+ F+ I + A V +K T + P+P L
Sbjct 264 VENKDNGGTTTFQWDRGHLFDRLSVLTFYETCIETAGNVAQVVDLKSKPTTKYRPLP--L 321
Query 174 NTVALLK 180
TV L K
Sbjct 322 TTVELQK 328
> tpv:TP03_0692 DNA topoisomerase III; K03165 DNA topoisomerase
III [EC:5.99.1.2]
Length=531
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 65/112 (58%), Gaps = 1/112 (0%)
Query 32 DIQKAMKQLGSPNKDESDAVDARQELDLKIGVAFTRFQTQYFQGKYGDLDSSLISYGPCQ 91
DI+ A L PNK+ ++AV+ RQE+DL+IG A TR+ T ++ + + ++++SYG CQ
Sbjct 109 DIEHACVNLKEPNKNLANAVETRQEIDLRIGSAITRYLTLKYKTQI-NTKAAILSYGTCQ 167
Query 92 TPTLQLCVHRSDTIQAFRPEEYYQIQPIVRVGEQELTLEWARGQVFDRVVAQ 143
PTL V R I+ F E ++ I V +T W R ++FD ++ +
Sbjct 168 LPTLGFVVERFILIENFISEPFWTINVEVTHDNIPVTFLWHRKRIFDELMNK 219
> eco:b1274 topA, asuA?, ECK1268, JW1266, supX; DNA topoisomerase
I, omega subunit (EC:5.99.1.2); K03168 DNA topoisomerase
I [EC:5.99.1.2]
Length=865
Score = 35.8 bits (81), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query 22 RAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLKIGVAFTRFQTQYFQGKYGDLD 81
R F+ + I++A + G N D +A AR+ +D +G + +
Sbjct 136 RVVFNEITKNAIRQAFNKPGELNIDRVNAQQARRFMDRVVGYMVSPLLWKKI-------- 187
Query 82 SSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQI 116
+ +S G Q+ ++L V R I+AF PEE++++
Sbjct 188 ARGLSAGRVQSVAVRLVVEREREIKAFVPEEFWEV 222
> ath:AT4G31210 DNA topoisomerase family protein
Length=1280
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 8/101 (7%)
Query 16 QQQQIWRAHFSALAPTDIQKAMKQLGSPNKDESDAVDARQELDLKIGVAFTRFQTQYFQG 75
+ + R F + + I+ A++ + D A AR+ LD IG + + G
Sbjct 575 ESMTVARVVFHEITESAIKSALQSPREIDGDLVHAYLARRALDYLIGFNISPLLWRKLPG 634
Query 76 KYGDLDSSLISYGPCQTPTLQLCVHRSDTIQAFRPEEYYQI 116
S G Q+ L L R I F+P+EY+ +
Sbjct 635 --------CPSAGRVQSAALALVCDRESEIDGFKPQEYWTV 667
> ath:AT5G51810 GA20OX2 (GIBBERELLIN 20 OXIDASE 2); gibberellin
20-oxidase (EC:1.14.11.12); K05282 gibberellin 20-oxidase
[EC:1.14.11.12]
Length=378
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 45/106 (42%), Gaps = 26/106 (24%)
Query 49 DAVDARQELDLKI----GVAFTRFQTQYFQGKYGDLDS--SLISYGPCQTPTLQL----- 97
D +A L LKI G++ YF+G + + DS L Y PCQTP L L
Sbjct 187 DYCEAMSSLSLKIMELLGLSLG-VNRDYFRGFFEENDSIMRLNHYPPCQTPDLTLGTGPH 245
Query 98 CVHRSDTI---------QAFRPEEYYQIQP-----IVRVGEQELTL 129
C S TI Q F ++ I+P +V +G+ + L
Sbjct 246 CDPSSLTILHQDHVNGLQVFVDNQWQSIRPNPKAFVVNIGDTFMAL 291
> mmu:228684 Sel1l2, Gm118; sel-1 suppressor of lin-12-like 2
(C. elegans); K07126
Length=688
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 0/22 (0%)
Query 67 RFQTQYFQGKYGDLDSSLISYG 88
+F T YF K GD+DSSLI Y
Sbjct 482 KFLTAYFAYKDGDIDSSLIQYA 503
> hsa:80343 SEL1L2, C20orf50, DJ842G6.2, DKFZp434C1826, FLJ22324,
dJ631M13.1; sel-1 suppressor of lin-12-like 2 (C. elegans);
K07126
Length=688
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 0/22 (0%)
Query 67 RFQTQYFQGKYGDLDSSLISYG 88
+F T YF K GD+DSSL+ Y
Sbjct 482 KFLTAYFAYKDGDIDSSLVQYA 503
> mmu:195209 Gm22; predicted gene 22
Length=3765
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 17/81 (20%)
Query 32 DIQKAMKQLGSPNKDESDAVDARQE--LDLKIG---------VAFTRFQTQYFQGKYGDL 80
D Q G P+K AR+ DL++ V F RF + G+L
Sbjct 2913 DFQVTANSQGPPDKRMEGTARARRAKGRDLRVKGKRASYKCRVCFQRFHS------LGEL 2966
Query 81 DSSLISYGPCQTPTLQLCVHR 101
D +S+ P PT LCV R
Sbjct 2967 DLHKLSHSPSPPPTCYLCVER 2987
Lambda K H
0.320 0.133 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 4859948100
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40