bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_1724_orf2 Length=150 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_046970 exosome component 10, putative ; K12591 exos... 126 3e-29 cpv:cgd5_100 RRPp/PMC2 like exosome 3'-5' exoribonuclease subu... 97.8 1e-20 bbo:BBOV_IV002650 21.m02990; exosome component 10; K12591 exos... 93.6 2e-19 tpv:TP03_0385 hypothetical protein; K12591 exosome complex exo... 93.6 2e-19 cel:C14A4.4 crn-3; Cell-death-Related Nuclease family member (... 84.3 1e-16 sce:YOR001W RRP6; Nuclear exosome exonuclease component; has 3... 80.1 2e-15 ath:AT5G35910 3'-5' exonuclease domain-containing protein / he... 72.4 5e-13 ath:AT2G32415 3'-5' exonuclease/ nucleic acid binding 68.9 6e-12 xla:431865 exosc10, MGC83774; exosome component 10; K12591 exo... 68.9 6e-12 mmu:50912 Exosc10, PM-Scl, PM/Scl-100, Pmscl2, RRP6, p2, p3, p... 68.9 6e-12 hsa:5394 EXOSC10, PM-Scl, PM/Scl-100, PMSCL, PMSCL2, RRP6, Rrp... 68.2 9e-12 dre:394064 MGC55695, Pmscl2, exosc10; zgc:55695; K12591 exosom... 66.2 3e-11 ath:AT1G54440 3'-5' exonuclease/ nucleic acid binding 65.9 5e-11 pfa:PF14_0473 Rrp6 homologue, putative 37.4 0.018 dre:286787 def, chunp6870, dj434o14.5, dj434o14.5l, fc51g08, f... 30.4 2.4 dre:100333054 cadherin 4-like 29.3 5.2 ath:AT1G06310 ACX6; ACX6 (ACYL-COA OXIDASE 6); FAD binding / a... 28.9 6.0 cel:F20B6.3 mrp-6; Multidrug Resistance Protein family member ... 28.9 6.6 hsa:117155 CATSPER2, MGC33346; cation channel, sperm associated 2 28.5 > tgo:TGME49_046970 exosome component 10, putative ; K12591 exosome complex exonuclease RRP6 [EC:3.1.13.-] Length=1353 Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 56/99 (56%), Positives = 75/99 (75%), Gaps = 5/99 (5%) Query 2 PFMTVYRKQQLREMLDELCSGRHKVVAIDTEHHSYESYKGFICLIQLSTCGSAGAAKDSL 61 P + + K++L+E++DEL SG H +VAID EHHS+ SY+GF CL+QLST KD + Sbjct 460 PLVRIAEKEELQELVDELSSGAHSLVAIDLEHHSFHSYRGFTCLLQLST-----REKDYI 514 Query 62 VDPFSLFVHLTALNELTANPKILKILHGSASDVIWLRRE 100 +DPF+LF HL LN +TANPKILKI HG+ SD+IWL+R+ Sbjct 515 IDPFALFDHLHVLNTITANPKILKIFHGADSDIIWLQRD 553 > cpv:cgd5_100 RRPp/PMC2 like exosome 3'-5' exoribonuclease subunit with an RNAseD domain and an HRDc domain ; K12591 exosome complex exonuclease RRP6 [EC:3.1.13.-] Length=957 Score = 97.8 bits (242), Expect = 1e-20, Method: Composition-based stats. Identities = 45/75 (60%), Positives = 57/75 (76%), Gaps = 5/75 (6%) Query 26 VVAIDTEHHSYESYKGFICLIQLSTCGSAGAAKDSLVDPFSLFVHLTALNELTANPKILK 85 ++AID EHHS +SYKGF+ LIQLST D ++DPF+LF + LNELTANPKILK Sbjct 303 LLAIDVEHHSNQSYKGFVSLIQLST-----RTHDYIIDPFNLFNEIQMLNELTANPKILK 357 Query 86 ILHGSASDVIWLRRE 100 +LHGS D+IWL+R+ Sbjct 358 VLHGSDYDIIWLQRD 372 > bbo:BBOV_IV002650 21.m02990; exosome component 10; K12591 exosome complex exonuclease RRP6 [EC:3.1.13.-] Length=879 Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 37/75 (49%), Positives = 59/75 (78%), Gaps = 5/75 (6%) Query 26 VVAIDTEHHSYESYKGFICLIQLSTCGSAGAAKDSLVDPFSLFVHLTALNELTANPKILK 85 +VAID EHHS +SY+GF+CL+Q++ GA D ++DPFS+F + LN++T +P+ILK Sbjct 337 IVAIDVEHHSTQSYRGFVCLVQIT-----GADDDWVIDPFSIFDEMWRLNDVTTDPRILK 391 Query 86 ILHGSASDVIWLRRE 100 ++HG+ SD++WL+R+ Sbjct 392 VMHGAESDILWLQRD 406 > tpv:TP03_0385 hypothetical protein; K12591 exosome complex exonuclease RRP6 [EC:3.1.13.-] Length=996 Score = 93.6 bits (231), Expect = 2e-19, Method: Composition-based stats. Identities = 42/86 (48%), Positives = 64/86 (74%), Gaps = 7/86 (8%) Query 15 MLDELCSGRHKVVAIDTEHHSYESYKGFICLIQLSTCGSAGAAKDSLVDPFSLFVHLTAL 74 MLD+L + R V+++D EHH E+Y+GFICL+QLST ++ ++DPF +F + L Sbjct 484 MLDKLKNIR--VLSLDVEHHDTETYRGFICLVQLST-----PEENYIIDPFKIFGKMNKL 536 Query 75 NELTANPKILKILHGSASDVIWLRRE 100 N LT +PKILKI+HG+++DV+WL+R+ Sbjct 537 NRLTTDPKILKIMHGASNDVVWLQRD 562 > cel:C14A4.4 crn-3; Cell-death-Related Nuclease family member (crn-3); K12591 exosome complex exonuclease RRP6 [EC:3.1.13.-] Length=876 Score = 84.3 bits (207), Expect = 1e-16, Method: Composition-based stats. Identities = 43/99 (43%), Positives = 60/99 (60%), Gaps = 7/99 (7%) Query 2 PFMTVYRKQQLREMLDELCSGRHKVVAIDTEHHSYESYKGFICLIQLSTCGSAGAAKDSL 61 P + K++L + L S K A+D EHH SY G CLIQ+ST +D + Sbjct 277 PLTMIDTKEKLEALTKTLNS--VKEFAVDLEHHQMRSYLGLTCLIQIST-----RDEDFI 329 Query 62 VDPFSLFVHLTALNELTANPKILKILHGSASDVIWLRRE 100 +DPF ++ H+ LNE ANP+ILK+ HGS SDV+WL+R+ Sbjct 330 IDPFPIWDHVGMLNEPFANPRILKVFHGSDSDVLWLQRD 368 > sce:YOR001W RRP6; Nuclear exosome exonuclease component; has 3'-5' exonuclease activity; involved in RNA processing, maturation, surveillance, degradation, tethering, and export; has similarity to E. coli RNase D and to human PM-Sc1 100 (EXOSC10) (EC:3.1.13.-); K12591 exosome complex exonuclease RRP6 [EC:3.1.13.-] Length=733 Score = 80.1 bits (196), Expect = 2e-15, Method: Composition-based stats. Identities = 44/110 (40%), Positives = 63/110 (57%), Gaps = 8/110 (7%) Query 11 QLREMLDELCSGRHKVVAIDTEHHSYESYKGFICLIQLSTCGSAGAAKDSLVDPFSLFVH 70 +L ML++L K +A+D EHH Y SY G +CL+Q+ST +D LVD L + Sbjct 221 ELESMLEDL--KNTKEIAVDLEHHDYRSYYGIVCLMQIST-----RERDYLVDTLKLREN 273 Query 71 LTALNELTANPKILKILHGSASDVIWLRRESLGVMTTPSEPTSHQGRPDG 120 L LNE+ NP I+K+ HG+ D+IWL+R+ LG+ T H + G Sbjct 274 LHILNEVFTNPSIVKVFHGAFMDIIWLQRD-LGLYVVGLFDTYHASKAIG 322 > ath:AT5G35910 3'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein; K12591 exosome complex exonuclease RRP6 [EC:3.1.13.-] Length=838 Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 37/100 (37%), Positives = 60/100 (60%), Gaps = 8/100 (8%) Query 2 PFMTVYRKQQLREMLDELCSGRHKVVAIDTEHHSYESYKGFICLIQLSTCGSAGAAKDSL 61 PF V + L+E++ +L S A+D EH+ Y S++G CL+Q+ST +D + Sbjct 227 PFKFVQEVKDLKELVAKLRSVEE--FAVDLEHNQYRSFQGLTCLMQIST-----RTEDYI 279 Query 62 VDPFSLFVHL-TALNELTANPKILKILHGSASDVIWLRRE 100 VD F L +H+ L E+ +PK K++HG+ D+IWL+R+ Sbjct 280 VDTFKLRIHIGPYLREIFKDPKKKKVMHGADRDIIWLQRD 319 > ath:AT2G32415 3'-5' exonuclease/ nucleic acid binding Length=891 Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 37/98 (37%), Positives = 60/98 (61%), Gaps = 7/98 (7%) Query 3 FMTVYRKQQLREMLDELCSGRHKVVAIDTEHHSYESYKGFICLIQLSTCGSAGAAKDSLV 62 ++ V + QL+E+ + L + +V A+DTE HS S+ GF LIQ+ST +D LV Sbjct 119 YVWVETESQLKELAEIL--AKEQVFAVDTEQHSLRSFLGFTALIQIST-----HEEDFLV 171 Query 63 DPFSLFVHLTALNELTANPKILKILHGSASDVIWLRRE 100 D +L ++ L + ++P I K+ HG+ +DVIWL+R+ Sbjct 172 DTIALHDVMSILRPVFSDPNICKVFHGADNDVIWLQRD 209 > xla:431865 exosc10, MGC83774; exosome component 10; K12591 exosome complex exonuclease RRP6 [EC:3.1.13.-] Length=883 Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 54/90 (60%), Gaps = 10/90 (11%) Query 16 LDELCSGRHKVV-----AIDTEHHSYESYKGFICLIQLSTCGSAGAAKDSLVDPFSLFVH 70 L++L + K++ A+D EHHSY S+ G CL+Q+ST +D ++D L + Sbjct 290 LEDLVALNEKLLQCAEFAVDLEHHSYRSFLGLTCLMQIST-----RTEDYIIDVLELRSN 344 Query 71 LTALNELTANPKILKILHGSASDVIWLRRE 100 L LNE NP I+K+ HG+ SD+ WL+++ Sbjct 345 LYILNESFTNPSIIKVFHGADSDIEWLQKD 374 > mmu:50912 Exosc10, PM-Scl, PM/Scl-100, Pmscl2, RRP6, p2, p3, p4; exosome component 10; K12591 exosome complex exonuclease RRP6 [EC:3.1.13.-] Length=887 Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 10/90 (11%) Query 16 LDELCSGRHKVV-----AIDTEHHSYESYKGFICLIQLSTCGSAGAAKDSLVDPFSLFVH 70 LDEL K++ A+D EHHSY S+ G CL+Q+ST +D +VD L Sbjct 294 LDELVELNEKLLGCQEFAVDLEHHSYRSFLGLTCLMQIST-----RTEDFIVDTLELRSD 348 Query 71 LTALNELTANPKILKILHGSASDVIWLRRE 100 + LNE +P I+K+ HG+ SD+ WL+++ Sbjct 349 MYILNESLTDPAIVKVFHGADSDIEWLQKD 378 > hsa:5394 EXOSC10, PM-Scl, PM/Scl-100, PMSCL, PMSCL2, RRP6, Rrp6p, p2, p3, p4; exosome component 10; K12591 exosome complex exonuclease RRP6 [EC:3.1.13.-] Length=885 Score = 68.2 bits (165), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 52/90 (57%), Gaps = 10/90 (11%) Query 16 LDELCSGRHKVV-----AIDTEHHSYESYKGFICLIQLSTCGSAGAAKDSLVDPFSLFVH 70 LDEL K++ A+D EHHSY S+ G CL+Q+ST +D ++D L Sbjct 294 LDELVELNEKLLNCQEFAVDLEHHSYRSFLGLTCLMQIST-----RTEDFIIDTLELRSD 348 Query 71 LTALNELTANPKILKILHGSASDVIWLRRE 100 + LNE +P I+K+ HG+ SD+ WL+++ Sbjct 349 MYILNESLTDPAIVKVFHGADSDIEWLQKD 378 > dre:394064 MGC55695, Pmscl2, exosc10; zgc:55695; K12591 exosome complex exonuclease RRP6 [EC:3.1.13.-] Length=899 Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 11/112 (9%) Query 11 QLREMLDELCSGRHKVV-----AIDTEHHSYESYKGFICLIQLSTCGSAGAAKDSLVDPF 65 Q L++L + K+ A+D EHHSY S+ G CL+Q+ST +D ++D Sbjct 287 QFISTLEDLVALNEKLAKTTEFAVDLEHHSYRSFLGITCLMQIST-----REEDFIIDTL 341 Query 66 SLFVHLTALNELTANPKILKILHGSASDVIWLRRESLGVMTTPSEPTSHQGR 117 L + LNE +P I+K+ HG+ SD+ WL+++ G+ T H R Sbjct 342 ELRSEMYILNETFTDPAIVKVFHGADSDIEWLQKD-FGLYVVNMFDTHHAAR 392 > ath:AT1G54440 3'-5' exonuclease/ nucleic acid binding Length=637 Score = 65.9 bits (159), Expect = 5e-11, Method: Composition-based stats. Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 8/100 (8%) Query 2 PFMTVYRKQQLREMLDELCSGRHKVVAIDTEHHSYESYKGFICLIQLSTCGSAGAAKDSL 61 PF V + L ++ L S A+D EH+ Y +++G CL+Q+ST +D + Sbjct 114 PFKLVEEVKDLEDLAAALQSVEE--FAVDLEHNQYRTFQGLTCLMQIST-----RTEDYI 166 Query 62 VDPFSLFVHLTA-LNELTANPKILKILHGSASDVIWLRRE 100 VD F L+ H+ L EL +PK K++HG+ D+IWL+R+ Sbjct 167 VDIFKLWDHIGPYLRELFKDPKKKKVIHGADRDIIWLQRD 206 > pfa:PF14_0473 Rrp6 homologue, putative Length=1136 Score = 37.4 bits (85), Expect = 0.018, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 53/101 (52%), Gaps = 6/101 (5%) Query 1 KPFMTVYRKQQLREMLDEL-CSGRHKVVAIDTEHHSYESYKGFICLIQLSTCGSAGAAKD 59 K + + K L M++ + + K ++I + + +Y+GF +I + T + Sbjct 537 KAYKIIDNKNDLINMINNIKLNYEEKKISIMIKVNYKRTYRGFTSIIMIGT-----NNMN 591 Query 60 SLVDPFSLFVHLTALNELTANPKILKILHGSASDVIWLRRE 100 ++D F++F L +N++T +P ILKI + + + + L+++ Sbjct 592 YIIDVFNMFEDLYIINDITTDPNILKITYNAPNIINQLQKD 632 > dre:286787 def, chunp6870, dj434o14.5, dj434o14.5l, fc51g08, fi05f05, wu:fc51g08, wu:fi05f05; digestive-organ expansion factor; K14774 U3 small nucleolar RNA-associated protein 25 Length=753 Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 8/64 (12%) Query 44 CLIQLSTCGSAGAAKDSLVDPFSLFVHLTALNELTANPKILKILHGSASDVIWLRRESLG 103 C+ L + G A + + P +H T L AN +L + G+A+DV L++E LG Sbjct 230 CMSPLERFPAIGQASSAPLPP----IHKT----LEANWHLLNLPFGAATDVTELQKEMLG 281 Query 104 VMTT 107 +M T Sbjct 282 LMGT 285 > dre:100333054 cadherin 4-like Length=645 Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust. Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query 51 CGSAGAAKDSLVDPFSLFVHLTALN-ELTANPKILKILHGSASD 93 CG+AGAA D PF HL A N E K + +LH S + Sbjct 512 CGAAGAAGDFKAIPFDAKEHLIAYNTEGQGEDKGMALLHMSKDE 555 > ath:AT1G06310 ACX6; ACX6 (ACYL-COA OXIDASE 6); FAD binding / acyl-CoA dehydrogenase/ acyl-CoA oxidase/ electron carrier/ oxidoreductase/ oxidoreductase, acting on the CH-CH group of donors (EC:1.3.3.6); K00232 acyl-CoA oxidase [EC:1.3.3.6] Length=675 Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%) Query 85 KILHGSASDVIWLRRESLGVMTTPSEPT----SHQGRPD-GNVQSELHNACGARHPHRIR 139 K+ GS DV+ L R +++ +P+ H R + G+V+ E+ CG PH + Sbjct 588 KLPPGSVKDVLGLVRSMYALISLEEDPSLLRYGHLSRDNVGDVRKEVSKLCGELRPHALA 647 Query 140 QGCSAG 145 S G Sbjct 648 LVASFG 653 > cel:F20B6.3 mrp-6; Multidrug Resistance Protein family member (mrp-6); K02021 putative ABC transport system ATP-binding protein Length=1396 Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust. Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query 16 LDELCSGRHKVVAIDTEHHSYESYKGFICLIQLSTCGSAGAAKDSLVDPF 65 L E CSGR + +D +H S +G + +I +G +++L DPF Sbjct 1184 LKEYCSGRVTIDGVDLDHISLNFRRGGMSIIPQEPVIFSGTVRENL-DPF 1232 > hsa:117155 CATSPER2, MGC33346; cation channel, sperm associated 2 Length=528 Score = 28.5 bits (62), Expect = 9.3, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 36/92 (39%), Gaps = 8/92 (8%) Query 54 AGAAKDSLVDPFSLFVHLTALNELTANPKILKILHGSASDVIWLRRE----SLGVMTTPS 109 A A + L+D FSL HL L++ I ++L S + L + + Sbjct 15 ADAIRSRLIDTFSLIEHLQGLSQAVPRHTIRELLDPSRQKKLVLGDQHQLVRFSIKPQRI 74 Query 110 EPTSHQGRPDGNVQSELHNACGARHPHRIRQG 141 E SH R + S LH C R P + G Sbjct 75 EQISHAQR----LLSRLHVRCSQRPPLSLWAG 102 Lambda K H 0.319 0.134 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 3134054208 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40