bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_2085_orf1 Length=114 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_086560 u6 snRNA-associated Sm-like protein, putativ... 149 3e-36 bbo:BBOV_III001070 17.m07121; LSM domain containing protein; K... 122 2e-28 pfa:PFL0460w lsm7 homologue, putative; K12626 U6 snRNA-associa... 122 2e-28 tpv:TP03_0732 U6 snRNA-associated protein; K12626 U6 snRNA-ass... 117 8e-27 dre:573047 lsm7, fj64g01, wu:fj64g01, zgc:66405; LSM7 homolog,... 111 4e-25 hsa:51690 LSM7, YNL147W; LSM7 homolog, U6 small nuclear RNA as... 111 6e-25 mmu:66094 Lsm7, 0910001B06Rik, 1110033F18Rik; LSM7 homolog, U6... 111 6e-25 mmu:100041500 Gm10146; predicted gene 10146; K12626 U6 snRNA-a... 111 6e-25 mmu:100505147 u6 snRNA-associated Sm-like protein LSm7-like 111 6e-25 xla:444555 lsm7, GC83430; LSM7 homolog, U6 small nuclear RNA a... 110 8e-25 cel:ZK593.7 lsm-7; LSM Sm-like protein family member (lsm-7); ... 109 2e-24 ath:AT2G03870 small nuclear ribonucleoprotein, putative / snRN... 106 2e-23 sce:YNL147W LSM7; Lsm (Like Sm) protein; part of heteroheptame... 73.6 2e-13 cpv:cgd7_3520 hypothetical protein ; K12626 U6 snRNA-associate... 58.2 7e-09 sce:YER146W LSM5; Lsm (Like Sm) protein; part of heteroheptame... 56.2 2e-08 tgo:TGME49_114790 small nuclear ribonucleoprotein E/G, putativ... 54.3 8e-08 dre:447922 zgc:103688; K11099 small nuclear ribonucleoprotein G 54.3 1e-07 xla:779307 snrpg, MGC154809; small nuclear ribonucleoprotein p... 53.9 1e-07 mmu:68011 Snrpg, 2810024K17Rik, AL022803, SMG; small nuclear r... 51.6 6e-07 hsa:6637 SNRPG, MGC117317, SMG, Sm-G; small nuclear ribonucleo... 51.6 6e-07 dre:100331618 small nuclear ribonucleoprotein polypeptide G-like 51.6 7e-07 pfa:MAL8P1.48 small nuclear ribonucleoprotein, putative; K1109... 50.8 9e-07 ath:AT3G11500 small nuclear ribonucleoprotein G, putative / sn... 49.7 2e-06 cel:Y71F9B.4 snr-7; Small Nuclear Ribonucleoprotein family mem... 48.5 5e-06 bbo:BBOV_II007600 18.m06632; small nuclear ribonucleoprotein G... 48.5 6e-06 tgo:TGME49_098970 LSM domain-containing protein ; K12622 U6 sn... 48.1 6e-06 hsa:100130932 small nuclear ribonucleoprotein G-like protein 47.4 1e-05 ath:AT4G20440 smB; smB (small nuclear ribonucleoprotein associ... 47.4 1e-05 sce:YFL017W-A SMX2, SNP2, YFL018W-A; Sm G; SmG; K11099 small n... 47.4 1e-05 bbo:BBOV_III010410 17.m07899; LSM domain containing protein; K... 47.4 1e-05 cpv:cgd7_3970 small nuclear ribonucleoprotein ; K11099 small n... 46.6 2e-05 xla:414488 lsmd1-b, MGC81227, pfaap2; LSM domain containing 1 45.1 ath:AT2G23930 SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEI... 45.1 5e-05 tpv:TP02_0362 small nuclear ribonucleoprotein B; K11086 small ... 45.1 6e-05 ath:AT5G44500 small nuclear ribonucleoprotein associated prote... 44.7 7e-05 mmu:76522 Naa38, 2010003I05Rik, AW214405, Lsm8; N(alpha)-acety... 44.3 9e-05 hsa:51691 NAA38, FLJ33242, LSM8; N(alpha)-acetyltransferase 38... 44.3 9e-05 mmu:666609 Gm8186, EG666609; predicted gene 8186; K11099 small... 44.3 9e-05 pfa:PF14_0146 ribonucleoprotein, putative; K11086 small nuclea... 44.3 1e-04 cpv:cgd1_2910 hypothetical protein ; K11086 small nuclear ribo... 43.5 2e-04 sce:YLR438C-A LSM3, SMX4, USS2; Lsm (Like Sm) protein; part of... 43.1 2e-04 xla:414679 naa38, MGC82379, lsm8; N(alpha)-acetyltransferase 3... 43.1 2e-04 cel:Y73B6BL.32 lsm-8; LSM Sm-like protein family member (lsm-8... 43.1 2e-04 mmu:67678 Lsm3, 1010001J12Rik, 2610005D18Rik, 6030401D18Rik, S... 42.7 3e-04 hsa:27258 LSM3, SMX4, USS2, YLR438C; LSM3 homolog, U6 small nu... 42.7 3e-04 xla:100049097 lsm3; LSM3 homolog, U6 small nuclear RNA associa... 42.7 3e-04 ath:AT1G76860 small nuclear ribonucleoprotein, putative / snRN... 42.7 3e-04 bbo:BBOV_III006010 17.m07530; Sm domain containing protein; K1... 42.4 4e-04 xla:443945 lsmd1-a, MGC80306, lsmd1, pfaap2; LSM domain contai... 41.6 6e-04 bbo:BBOV_IV009630 23.m05873; snRNP Sm-like protein; K12624 U6 ... 41.2 9e-04 > tgo:TGME49_086560 u6 snRNA-associated Sm-like protein, putative ; K12626 U6 snRNA-associated Sm-like protein LSm7 Length=99 Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 69/95 (72%), Positives = 84/95 (88%), Gaps = 0/95 (0%) Query 15 MSSKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASR 74 M+SK+ RSVID +KFLN++VRVKFSGGRE+ G LKGHDAV NLVLD+TEEFLRDPED + Sbjct 1 MTSKEARSVIDLNKFLNQRVRVKFSGGREITGVLKGHDAVSNLVLDETEEFLRDPEDPYK 60 Query 75 LLETTRSLGLVVARGSAIVLISPVDGVQRIENPFI 109 LL+ TR+LGL+VARG+A+VLISPVDG + I NPF+ Sbjct 61 LLDQTRTLGLIVARGTAVVLISPVDGTEEIANPFV 95 > bbo:BBOV_III001070 17.m07121; LSM domain containing protein; K12626 U6 snRNA-associated Sm-like protein LSm7 Length=103 Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 56/95 (58%), Positives = 75/95 (78%), Gaps = 0/95 (0%) Query 16 SSKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRL 75 S +D +SVI +LNKKV VKFSGGREV+G L+GHD + NLVLD+TEEFLRDP+D R+ Sbjct 7 SFRDVKSVIKLDAYLNKKVYVKFSGGREVQGILRGHDVMSNLVLDETEEFLRDPDDLDRV 66 Query 76 LETTRSLGLVVARGSAIVLISPVDGVQRIENPFIG 110 + TR LGL+VARG+++ +I PV+G ++I NPF+ Sbjct 67 TDKTRQLGLLVARGTSVTVIHPVEGAEKIANPFLA 101 > pfa:PFL0460w lsm7 homologue, putative; K12626 U6 snRNA-associated Sm-like protein LSm7 Length=108 Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 56/96 (58%), Positives = 75/96 (78%), Gaps = 0/96 (0%) Query 17 SKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLL 76 +KD + + D KF+N+K+RVKF GGREV GTL GHDA+ NLVLD TEE++RDP D+ + Sbjct 12 NKDNKFMTDIKKFMNQKIRVKFDGGREVVGTLIGHDAIFNLVLDKTEEYIRDPNDSFVVT 71 Query 77 ETTRSLGLVVARGSAIVLISPVDGVQRIENPFIGVE 112 + TRS+GL+VARG+++ LI+PV+G Q I NPFI E Sbjct 72 DKTRSIGLIVARGTSVALITPVEGTQEISNPFITEE 107 > tpv:TP03_0732 U6 snRNA-associated protein; K12626 U6 snRNA-associated Sm-like protein LSm7 Length=104 Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 53/94 (56%), Positives = 77/94 (81%), Gaps = 0/94 (0%) Query 16 SSKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRL 75 S +D +SVI+ +K LNK+V VKFSGGREV+G L+GHDA+ NLVLDDT E+L+D D+S+L Sbjct 7 SFRDVKSVINLNKHLNKEVYVKFSGGREVKGVLRGHDAMSNLVLDDTVEYLKDSSDSSKL 66 Query 76 LETTRSLGLVVARGSAIVLISPVDGVQRIENPFI 109 R+LGL+VARG+++ ++ PV+G ++I+NPF+ Sbjct 67 TGEKRNLGLLVARGTSVTVVYPVEGTEKIDNPFL 100 > dre:573047 lsm7, fj64g01, wu:fj64g01, zgc:66405; LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae); K12626 U6 snRNA-associated Sm-like protein LSm7 Length=103 Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 54/98 (55%), Positives = 71/98 (72%), Gaps = 3/98 (3%) Query 15 MSSKDPR---SVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPED 71 M+ KD + S+ D SK+++K +RVKF GGRE G LKG D + NLVLD T E++RDP+D Sbjct 1 MADKDKKKKESIFDLSKYIDKHIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDD 60 Query 72 ASRLLETTRSLGLVVARGSAIVLISPVDGVQRIENPFI 109 +L E TR LGLVV RG+++VLI P DG++ I NPFI Sbjct 61 QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFI 98 > hsa:51690 LSM7, YNL147W; LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae); K12626 U6 snRNA-associated Sm-like protein LSm7 Length=103 Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 52/92 (56%), Positives = 68/92 (73%), Gaps = 0/92 (0%) Query 18 KDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLE 77 K S++D SK+++K +RVKF GGRE G LKG D + NLVLD T E++RDP+D +L E Sbjct 7 KKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTE 66 Query 78 TTRSLGLVVARGSAIVLISPVDGVQRIENPFI 109 TR LGLVV RG+++VLI P DG++ I NPFI Sbjct 67 DTRQLGLVVCRGTSVVLICPQDGMEAIPNPFI 98 > mmu:66094 Lsm7, 0910001B06Rik, 1110033F18Rik; LSM7 homolog, U6 small nuclear RNA associated (S. cerevisiae) Length=103 Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 51/92 (55%), Positives = 68/92 (73%), Gaps = 0/92 (0%) Query 18 KDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLE 77 K S++D SK+++K +RVKF GGRE G LKG D + NLVLD T E++RDP+D +L E Sbjct 7 KKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTE 66 Query 78 TTRSLGLVVARGSAIVLISPVDGVQRIENPFI 109 TR LGLVV RG+++VLI P DG++ I NPF+ Sbjct 67 DTRQLGLVVCRGTSVVLICPQDGMEAIPNPFV 98 > mmu:100041500 Gm10146; predicted gene 10146; K12626 U6 snRNA-associated Sm-like protein LSm7 Length=103 Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 51/92 (55%), Positives = 68/92 (73%), Gaps = 0/92 (0%) Query 18 KDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLE 77 K S++D SK+++K +RVKF GGRE G LKG D + NLVLD T E++RDP+D +L E Sbjct 7 KKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTE 66 Query 78 TTRSLGLVVARGSAIVLISPVDGVQRIENPFI 109 TR LGLVV RG+++VLI P DG++ I NPF+ Sbjct 67 DTRQLGLVVCRGTSVVLICPQDGMEAIPNPFV 98 > mmu:100505147 u6 snRNA-associated Sm-like protein LSm7-like Length=103 Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 51/92 (55%), Positives = 68/92 (73%), Gaps = 0/92 (0%) Query 18 KDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLE 77 K S++D SK+++K +RVKF GGRE G LKG D + NLVLD T E++RDP+D +L E Sbjct 7 KKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTE 66 Query 78 TTRSLGLVVARGSAIVLISPVDGVQRIENPFI 109 TR LGLVV RG+++VLI P DG++ I NPF+ Sbjct 67 DTRQLGLVVCRGTSVVLICPQDGMEAIPNPFV 98 > xla:444555 lsm7, GC83430; LSM7 homolog, U6 small nuclear RNA associated; K12626 U6 snRNA-associated Sm-like protein LSm7 Length=103 Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 51/92 (55%), Positives = 68/92 (73%), Gaps = 0/92 (0%) Query 18 KDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLE 77 K S++D SK+++K +RVKF GGRE G LKG D + NLVLD T E++RDP+D +L E Sbjct 7 KKKESILDLSKYIDKTIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTE 66 Query 78 TTRSLGLVVARGSAIVLISPVDGVQRIENPFI 109 TR LGLVV RG+++VLI P DG++ I NPF+ Sbjct 67 DTRQLGLVVCRGTSVVLICPQDGMEAIPNPFV 98 > cel:ZK593.7 lsm-7; LSM Sm-like protein family member (lsm-7); K12626 U6 snRNA-associated Sm-like protein LSm7 Length=104 Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 48/87 (55%), Positives = 69/87 (79%), Gaps = 0/87 (0%) Query 22 SVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRS 81 SV+D ++FL+K++RVKF GGRE G L+G D + N+VLDD E+LRDP++ S + + TR Sbjct 12 SVVDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQ 71 Query 82 LGLVVARGSAIVLISPVDGVQRIENPF 108 LGL+VARG+AI ++SP DG+++I NPF Sbjct 72 LGLIVARGTAITVVSPADGLEQIANPF 98 > ath:AT2G03870 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; K12626 U6 snRNA-associated Sm-like protein LSm7 Length=99 Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 48/92 (52%), Positives = 70/92 (76%), Gaps = 0/92 (0%) Query 22 SVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRS 81 +V+D +KF++K V+VK +GGR+V GTLKG+D + NLVLD+ EF+RD +D + + TR Sbjct 7 TVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRR 66 Query 82 LGLVVARGSAIVLISPVDGVQRIENPFIGVEA 113 LGL+V RG+A++L+SP DG + I NPF+ EA Sbjct 67 LGLIVCRGTAVMLVSPTDGTEEIANPFVTAEA 98 > sce:YNL147W LSM7; Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA; K12626 U6 snRNA-associated Sm-like protein LSm7 Length=115 Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 3/96 (3%) Query 8 PVEESTKMSSKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLR 67 P ++ K +++D +K+ + K+RVK GG+ V G LKG+D + NLVLDDT E++ Sbjct 12 PQQQRKKFEGPKREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMS 71 Query 68 DPEDASR---LLETTRSLGLVVARGSAIVLISPVDG 100 +P+D + + + R LGL V RG+ +V +S +G Sbjct 72 NPDDENNTELISKNARKLGLTVIRGTILVSLSSAEG 107 > cpv:cgd7_3520 hypothetical protein ; K12626 U6 snRNA-associated Sm-like protein LSm7 Length=73 Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 7/66 (10%) Query 1 PKYLFCAPVEESTKMSSKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLD 60 KY +E S+K S++ +KF NK+++VK GGREV G L+G DAV NLVLD Sbjct 6 AKYYLSFNIEMSSK-------SILGLNKFNNKEIKVKLCGGREVIGILRGFDAVTNLVLD 58 Query 61 DTEEFL 66 +T E++ Sbjct 59 ETVEYM 64 > sce:YER146W LSM5; Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA; K12624 U6 snRNA-associated Sm-like protein LSm5 Length=93 Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 2/78 (2%) Query 20 PRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETT 79 P VID K +N+KV + RE EGTL G D N++L+D E+L DPED SR + Sbjct 8 PLEVID--KTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVM 65 Query 80 RSLGLVVARGSAIVLISP 97 + G ++ G+ I ++ P Sbjct 66 QHHGRMLLSGNNIAILVP 83 > tgo:TGME49_114790 small nuclear ribonucleoprotein E/G, putative ; K11099 small nuclear ribonucleoprotein G Length=93 Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%) Query 25 DPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLET-TRSLG 83 D +F+ K++ V SGGR V G L+G+D N+VL++T E +P +++ T T +G Sbjct 13 DLRRFMEKRLDVHLSGGRRVVGVLRGYDTFMNIVLENTVEVKGNPANSASSGGTETNEIG 72 Query 84 LVVARGSAIVLISPVDGVQ 102 VV RG++I+ +D V+ Sbjct 73 FVVVRGNSILYWECLDKVR 91 > dre:447922 zgc:103688; K11099 small nuclear ribonucleoprotein G Length=76 Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 8/74 (10%) Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVA 87 KF++KK+ +K +GGR V+G L+G D NLV+DDT E + ++G+VV Sbjct 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGGQ--------MNTIGMVVI 62 Query 88 RGSAIVLISPVDGV 101 RG++I+++ ++ V Sbjct 63 RGNSIIMLEALERV 76 > xla:779307 snrpg, MGC154809; small nuclear ribonucleoprotein polypeptide G; K11099 small nuclear ribonucleoprotein G Length=76 Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 8/74 (10%) Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVA 87 KF++KK+ +K +GGR+V+G L+G D NLVLD++ E S+G+VV Sbjct 11 KFMDKKLSLKINGGRQVQGILRGFDPFMNLVLDESTEISGSG--------NQNSIGMVVI 62 Query 88 RGSAIVLISPVDGV 101 RG++I+++ ++ V Sbjct 63 RGNSIIMLEALERV 76 > mmu:68011 Snrpg, 2810024K17Rik, AL022803, SMG; small nuclear ribonucleoprotein polypeptide G; K11099 small nuclear ribonucleoprotein G Length=76 Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 8/74 (10%) Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVA 87 KF++KK+ +K +GGR V+G L+G D NLV+D+ E + ++G+VV Sbjct 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ--------NNIGMVVI 62 Query 88 RGSAIVLISPVDGV 101 RG++I+++ ++ V Sbjct 63 RGNSIIMLEALERV 76 > hsa:6637 SNRPG, MGC117317, SMG, Sm-G; small nuclear ribonucleoprotein polypeptide G; K11099 small nuclear ribonucleoprotein G Length=76 Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 8/74 (10%) Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVA 87 KF++KK+ +K +GGR V+G L+G D NLV+D+ E + ++G+VV Sbjct 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ--------NNIGMVVI 62 Query 88 RGSAIVLISPVDGV 101 RG++I+++ ++ V Sbjct 63 RGNSIIMLEALERV 76 > dre:100331618 small nuclear ribonucleoprotein polypeptide G-like Length=79 Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 5/74 (6%) Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVA 87 KF++KK+ +K +GGR V+G L+G D NLV+DDT E + + T ++V Sbjct 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGGQ-----MNTIGMWSVLVI 65 Query 88 RGSAIVLISPVDGV 101 RG++I+++ ++ V Sbjct 66 RGNSIIMLEALERV 79 > pfa:MAL8P1.48 small nuclear ribonucleoprotein, putative; K11099 small nuclear ribonucleoprotein G Length=83 Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 9/78 (11%) Query 25 DPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGL 84 D KF+ K++++ +G R+V G L+G+D NLVLD+T E +D + +G+ Sbjct 13 DFRKFMEKRLQIYLNGNRQVVGILRGYDTFMNLVLDNTMEIKKDEQ---------IDIGV 63 Query 85 VVARGSAIVLISPVDGVQ 102 VV RG++I +D V Sbjct 64 VVIRGNSISYWECLDKVN 81 > ath:AT3G11500 small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative; K11099 small nuclear ribonucleoprotein G Length=79 Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 9/79 (11%) Query 25 DPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGL 84 D K+++KK+++K + R V GTL+G D NLV+D+T E D + +G+ Sbjct 9 DLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDK---------TDIGM 59 Query 85 VVARGSAIVLISPVDGVQR 103 VV RG++IV + ++ V R Sbjct 60 VVIRGNSIVTVEALEPVGR 78 > cel:Y71F9B.4 snr-7; Small Nuclear Ribonucleoprotein family member (snr-7); K11099 small nuclear ribonucleoprotein G Length=77 Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 8/70 (11%) Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVA 87 K+++K++ +K +G R V G L+G D N+V+D+ E+ +D + +LG+ V Sbjct 11 KYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDG--------GSVNLGMTVI 62 Query 88 RGSAIVLISP 97 RG+++V++ P Sbjct 63 RGNSVVIMEP 72 > bbo:BBOV_II007600 18.m06632; small nuclear ribonucleoprotein G; K11099 small nuclear ribonucleoprotein G Length=80 Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 9/78 (11%) Query 25 DPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGL 84 D +++ K++ V +G R V G L+G+D N+VLD+ + D E TR LG+ Sbjct 10 DLRRYMEKRLDVHLTGSRHVVGVLRGYDTFMNVVLDNALQIEGD--------EQTR-LGM 60 Query 85 VVARGSAIVLISPVDGVQ 102 VV RG+AIV +D V Sbjct 61 VVIRGNAIVYWECLDKVH 78 > tgo:TGME49_098970 LSM domain-containing protein ; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=96 Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 5/75 (6%) Query 30 LNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEE----FLRDPEDAS-RLLETTRSLGL 84 L+++V +K G REV G L +D N+VL D EE DP + +TTR L L Sbjct 18 LDERVTIKCRGDREVVGKLHAYDMHLNMVLGDVEEVATTVTSDPLTGDEQTKKTTRRLPL 77 Query 85 VVARGSAIVLISPVD 99 + RG AI+L++PV+ Sbjct 78 IFLRGDAIILVAPVN 92 > hsa:100130932 small nuclear ribonucleoprotein G-like protein Length=74 Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 8/72 (11%) Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVA 87 KF +KK +K +GGR V+G L+G D NLV+D+ E + +++G+V Sbjct 11 KFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ--------KNIGMVEI 62 Query 88 RGSAIVLISPVD 99 RG++I+++ ++ Sbjct 63 RGNSIIMLEALE 74 > ath:AT4G20440 smB; smB (small nuclear ribonucleoprotein associated protein B); K11086 small nuclear ribonucleoprotein B and B' Length=257 Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%) Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLL----ETTRSLG 83 +F+N ++RV GR++ G D NLVL D EEF + P + + E R+LG Sbjct 11 QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLG 70 Query 84 LVVARGSAIVLIS 96 LV+ RG ++ ++ Sbjct 71 LVLLRGEEVISMT 83 > sce:YFL017W-A SMX2, SNP2, YFL018W-A; Sm G; SmG; K11099 small nuclear ribonucleoprotein G Length=77 Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 7/75 (9%) Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGL-VV 86 K+++KK+ + +G R+V G L+G+D N+VLDD E + ED + LGL V Sbjct 9 KYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEI--NGEDPA----NNHQLGLQTV 62 Query 87 ARGSAIVLISPVDGV 101 RG++I+ + +D + Sbjct 63 IRGNSIISLEALDAI 77 > bbo:BBOV_III010410 17.m07899; LSM domain containing protein; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=89 Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 7/88 (7%) Query 17 SKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLR----DPEDA 72 SK+P VI + L+++V +K GGRE+ G L +D CN++L D E DP Sbjct 2 SKEPMDVIRVN--LDERVYLKCKGGREIVGQLHAYDEHCNMLLSDAIETFTSVELDPTTN 59 Query 73 SRLLE-TTRSLGLVVARGSAIVLISPVD 99 + T++ G+V RG A++L+S + Sbjct 60 QEVTTITSKDSGVVFVRGDALILLSHAN 87 > cpv:cgd7_3970 small nuclear ribonucleoprotein ; K11099 small nuclear ribonucleoprotein G Length=62 Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 9/67 (13%) Query 36 VKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVARGSAIVLI 95 VK +G R++ G+L+G+D NLVL++T E L T +S+G V RG+++++ Sbjct 4 VKLNGNRQIIGSLRGYDNFMNLVLENTTEVLD---------STKKSIGTTVIRGNSVIMW 54 Query 96 SPVDGVQ 102 +D V+ Sbjct 55 ECIDKVK 61 > xla:414488 lsmd1-b, MGC81227, pfaap2; LSM domain containing 1 Length=111 Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query 29 FLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVAR 88 LN+ +R++ + GR + G D CN++L +EFLR P D+ R+ E R LGL + Sbjct 36 LLNRNMRIQMTDGRSLIGCFLCTDRDCNVILGSAQEFLR-PSDSFRIRE-PRVLGLAMVP 93 Query 89 GSAIVLI 95 G IV I Sbjct 94 GHHIVSI 100 > ath:AT2G23930 SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G); K04796 small nuclear ribonucleoprotein Length=67 Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 9/74 (12%) Query 30 LNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVARG 89 ++KK+++K + R V GTL+G D NLV+D+T E + D + +G+VV RG Sbjct 1 MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEV--NGNDKT-------DIGMVVIRG 51 Query 90 SAIVLISPVDGVQR 103 ++IV + ++ V R Sbjct 52 NSIVTVEALEPVGR 65 > tpv:TP02_0362 small nuclear ribonucleoprotein B; K11086 small nuclear ribonucleoprotein B and B' Length=155 Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%) Query 29 FLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEF-LRDPEDASRLLETTRSLGLVVA 87 +L VRV R+ GTL +D NLVL D EEF + +D +R E R+LG V+ Sbjct 11 WLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNR-TEVKRTLGFVLL 69 Query 88 RGSAIVLI---SPVD 99 RG IV SPV+ Sbjct 70 RGENIVSFTAKSPVN 84 > ath:AT5G44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative; K11086 small nuclear ribonucleoprotein B and B' Length=254 Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%) Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDP-----EDASRLLETTRSL 82 +F+N ++RV GR++ G D NLVL D EEF + P + + E R+L Sbjct 11 QFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREERRTL 70 Query 83 GLVVARGSAIVLIS 96 GLV+ RG ++ ++ Sbjct 71 GLVLLRGEEVISMT 84 > mmu:76522 Naa38, 2010003I05Rik, AW214405, Lsm8; N(alpha)-acetyltransferase 38, NatC auxiliary subunit; K12627 U6 snRNA-associated Sm-like protein LSm8 Length=96 Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRS-----L 82 ++N+ V V S GR + GTLKG D NL+LD++ E R+ +++ L Sbjct 7 NYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE---------RVFSSSQGVEQVVL 57 Query 83 GLVVARGSAIVLISPVD 99 GL + RG + +I +D Sbjct 58 GLYIVRGDNVAVIGEID 74 > hsa:51691 NAA38, FLJ33242, LSM8; N(alpha)-acetyltransferase 38, NatC auxiliary subunit; K12627 U6 snRNA-associated Sm-like protein LSm8 Length=96 Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRS-----L 82 ++N+ V V S GR + GTLKG D NL+LD++ E R+ +++ L Sbjct 7 NYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE---------RVFSSSQGVEQVVL 57 Query 83 GLVVARGSAIVLISPVD 99 GL + RG + +I +D Sbjct 58 GLYIVRGDNVAVIGEID 74 > mmu:666609 Gm8186, EG666609; predicted gene 8186; K11099 small nuclear ribonucleoprotein G Length=76 Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 8/74 (10%) Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVA 87 K +++ +K +GGR V+G L+G D NLV+D+ E + ++G+VV Sbjct 11 KVYGQELSLKLNGGRHVQGILQGFDPFMNLVIDECVEMATSGQQ--------NNIGMVVI 62 Query 88 RGSAIVLISPVDGV 101 RG++I+++ ++ V Sbjct 63 RGNSIIMLEALERV 76 > pfa:PF14_0146 ribonucleoprotein, putative; K11086 small nuclear ribonucleoprotein B and B' Length=201 Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 0/65 (0%) Query 29 FLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVAR 88 +L +VRV S R GT +D N+VL D EEF + + L E R +GL++ R Sbjct 10 WLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSLKEIKRVVGLILIR 69 Query 89 GSAIV 93 G IV Sbjct 70 GENIV 74 > cpv:cgd1_2910 hypothetical protein ; K11086 small nuclear ribonucleoprotein B and B' Length=139 Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%) Query 27 SKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVV 86 K++N ++RV R + G L D NLVL D +E+ R + E RSLGL++ Sbjct 2 QKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEY-RRVKKGEESKELKRSLGLIM 60 Query 87 ARGSAIV 93 RG IV Sbjct 61 LRGENIV 67 > sce:YLR438C-A LSM3, SMX4, USS2; Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=89 Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%) Query 30 LNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVARG 89 L+++V +K G R + GTL+ D+ CN+VL D E + + L E+ R +V RG Sbjct 12 LDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNN-EELSESERRCEMVFIRG 70 Query 90 SAIVLIS 96 + LIS Sbjct 71 DTVTLIS 77 > xla:414679 naa38, MGC82379, lsm8; N(alpha)-acetyltransferase 38, NatC auxiliary subunit; K12627 U6 snRNA-associated Sm-like protein LSm8 Length=96 Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%) Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRS-----L 82 ++N+ V V + GR + GTLKG D NL+LD++ E R+ +++ L Sbjct 7 NYINRTVAVITADGRMIVGTLKGFDQTINLILDESHE---------RVFSSSQGVEQVVL 57 Query 83 GLVVARGSAIVLISPVD 99 GL + RG + +I +D Sbjct 58 GLYIVRGDNVAVIGEID 74 > cel:Y73B6BL.32 lsm-8; LSM Sm-like protein family member (lsm-8); K12627 U6 snRNA-associated Sm-like protein LSm8 Length=98 Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%) Query 29 FLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVAR 88 ++N+ V V GR + G LKG D + NLV++D E R + +L T LGL + R Sbjct 8 YMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHE--RSYSETEGVL--TTPLGLYIIR 63 Query 89 GSAIVLISPVD 99 G + +I +D Sbjct 64 GENVAIIGEID 74 > mmu:67678 Lsm3, 1010001J12Rik, 2610005D18Rik, 6030401D18Rik, SMX4, USS2; LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae); K12622 U6 snRNA-associated Sm-like protein LSm3 Length=102 Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 7/93 (7%) Query 10 EESTKMSSKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLR-- 67 ++ T + ++P +I S L++++ VK RE+ G L +D N++L D EE + Sbjct 7 QQQTTNTVEEPLDLIRLS--LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTI 64 Query 68 --DPEDASRLLETT-RSLGLVVARGSAIVLISP 97 D E + ++T R++ ++ RG +VL++P Sbjct 65 EIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAP 97 > hsa:27258 LSM3, SMX4, USS2, YLR438C; LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae); K12622 U6 snRNA-associated Sm-like protein LSm3 Length=102 Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 7/93 (7%) Query 10 EESTKMSSKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLR-- 67 ++ T + ++P +I S L++++ VK RE+ G L +D N++L D EE + Sbjct 7 QQQTTNTVEEPLDLIRLS--LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTI 64 Query 68 --DPEDASRLLETT-RSLGLVVARGSAIVLISP 97 D E + ++T R++ ++ RG +VL++P Sbjct 65 EIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAP 97 > xla:100049097 lsm3; LSM3 homolog, U6 small nuclear RNA associated; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=102 Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 7/93 (7%) Query 10 EESTKMSSKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLR-- 67 ++ T + ++P +I S L++++ VK RE+ G L +D N++L D EE + Sbjct 7 QQQTTNTVEEPLDLIRLS--LDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTI 64 Query 68 --DPEDASRLLETT-RSLGLVVARGSAIVLISP 97 D E + ++T R++ ++ RG +VL++P Sbjct 65 EIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAP 97 > ath:AT1G76860 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=98 Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 9/92 (9%) Query 15 MSSKDPRSVIDPSKF----LNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLR--- 67 MS ++ +V +P L++++ VK RE+ G L D N++L D EE + Sbjct 1 MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60 Query 68 -DPEDASRLLETT-RSLGLVVARGSAIVLISP 97 D E ++ TT R++ + RG ++L+SP Sbjct 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSP 92 > bbo:BBOV_III006010 17.m07530; Sm domain containing protein; K11086 small nuclear ribonucleoprotein B and B' Length=159 Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 6/71 (8%) Query 27 SKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFL----RDPEDASRLLETTRSL 82 ++L +VRV GR+ GT D NLVL D EEF + P+ +E R+L Sbjct 9 QQWLQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQK--VELKRTL 66 Query 83 GLVVARGSAIV 93 G ++ RG IV Sbjct 67 GFIMLRGENIV 77 > xla:443945 lsmd1-a, MGC80306, lsmd1, pfaap2; LSM domain containing 1 Length=113 Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%) Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVA 87 LN+ +R++ + GR + G D CN++L +EFLR P D+ + E R LGL + Sbjct 35 SLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGSAQEFLR-PSDSFPVRE-PRVLGLAMV 92 Query 88 RGSAIVLI 95 G IV I Sbjct 93 PGHHIVSI 100 > bbo:BBOV_IV009630 23.m05873; snRNP Sm-like protein; K12624 U6 snRNA-associated Sm-like protein LSm5 Length=87 Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 7/80 (8%) Query 20 PRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETT 79 P +++D K L KV + G +E+ G L+G D N+VLDD E+ P +ETT Sbjct 12 PLALVD--KCLGTKVWIIMKGEKEITGVLRGFDDYMNVVLDDVTEYTFKPTG----VETT 65 Query 80 RSLGLVVARGSAIVLISPVD 99 L + G+ I +I P D Sbjct 66 E-LKDALVNGTNIAMIVPGD 84 Lambda K H 0.316 0.136 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2047611720 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40