bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_2085_orf1
Length=114
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_086560 u6 snRNA-associated Sm-like protein, putativ... 149 3e-36
bbo:BBOV_III001070 17.m07121; LSM domain containing protein; K... 122 2e-28
pfa:PFL0460w lsm7 homologue, putative; K12626 U6 snRNA-associa... 122 2e-28
tpv:TP03_0732 U6 snRNA-associated protein; K12626 U6 snRNA-ass... 117 8e-27
dre:573047 lsm7, fj64g01, wu:fj64g01, zgc:66405; LSM7 homolog,... 111 4e-25
hsa:51690 LSM7, YNL147W; LSM7 homolog, U6 small nuclear RNA as... 111 6e-25
mmu:66094 Lsm7, 0910001B06Rik, 1110033F18Rik; LSM7 homolog, U6... 111 6e-25
mmu:100041500 Gm10146; predicted gene 10146; K12626 U6 snRNA-a... 111 6e-25
mmu:100505147 u6 snRNA-associated Sm-like protein LSm7-like 111 6e-25
xla:444555 lsm7, GC83430; LSM7 homolog, U6 small nuclear RNA a... 110 8e-25
cel:ZK593.7 lsm-7; LSM Sm-like protein family member (lsm-7); ... 109 2e-24
ath:AT2G03870 small nuclear ribonucleoprotein, putative / snRN... 106 2e-23
sce:YNL147W LSM7; Lsm (Like Sm) protein; part of heteroheptame... 73.6 2e-13
cpv:cgd7_3520 hypothetical protein ; K12626 U6 snRNA-associate... 58.2 7e-09
sce:YER146W LSM5; Lsm (Like Sm) protein; part of heteroheptame... 56.2 2e-08
tgo:TGME49_114790 small nuclear ribonucleoprotein E/G, putativ... 54.3 8e-08
dre:447922 zgc:103688; K11099 small nuclear ribonucleoprotein G 54.3 1e-07
xla:779307 snrpg, MGC154809; small nuclear ribonucleoprotein p... 53.9 1e-07
mmu:68011 Snrpg, 2810024K17Rik, AL022803, SMG; small nuclear r... 51.6 6e-07
hsa:6637 SNRPG, MGC117317, SMG, Sm-G; small nuclear ribonucleo... 51.6 6e-07
dre:100331618 small nuclear ribonucleoprotein polypeptide G-like 51.6 7e-07
pfa:MAL8P1.48 small nuclear ribonucleoprotein, putative; K1109... 50.8 9e-07
ath:AT3G11500 small nuclear ribonucleoprotein G, putative / sn... 49.7 2e-06
cel:Y71F9B.4 snr-7; Small Nuclear Ribonucleoprotein family mem... 48.5 5e-06
bbo:BBOV_II007600 18.m06632; small nuclear ribonucleoprotein G... 48.5 6e-06
tgo:TGME49_098970 LSM domain-containing protein ; K12622 U6 sn... 48.1 6e-06
hsa:100130932 small nuclear ribonucleoprotein G-like protein 47.4 1e-05
ath:AT4G20440 smB; smB (small nuclear ribonucleoprotein associ... 47.4 1e-05
sce:YFL017W-A SMX2, SNP2, YFL018W-A; Sm G; SmG; K11099 small n... 47.4 1e-05
bbo:BBOV_III010410 17.m07899; LSM domain containing protein; K... 47.4 1e-05
cpv:cgd7_3970 small nuclear ribonucleoprotein ; K11099 small n... 46.6 2e-05
xla:414488 lsmd1-b, MGC81227, pfaap2; LSM domain containing 1 45.1
ath:AT2G23930 SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEI... 45.1 5e-05
tpv:TP02_0362 small nuclear ribonucleoprotein B; K11086 small ... 45.1 6e-05
ath:AT5G44500 small nuclear ribonucleoprotein associated prote... 44.7 7e-05
mmu:76522 Naa38, 2010003I05Rik, AW214405, Lsm8; N(alpha)-acety... 44.3 9e-05
hsa:51691 NAA38, FLJ33242, LSM8; N(alpha)-acetyltransferase 38... 44.3 9e-05
mmu:666609 Gm8186, EG666609; predicted gene 8186; K11099 small... 44.3 9e-05
pfa:PF14_0146 ribonucleoprotein, putative; K11086 small nuclea... 44.3 1e-04
cpv:cgd1_2910 hypothetical protein ; K11086 small nuclear ribo... 43.5 2e-04
sce:YLR438C-A LSM3, SMX4, USS2; Lsm (Like Sm) protein; part of... 43.1 2e-04
xla:414679 naa38, MGC82379, lsm8; N(alpha)-acetyltransferase 3... 43.1 2e-04
cel:Y73B6BL.32 lsm-8; LSM Sm-like protein family member (lsm-8... 43.1 2e-04
mmu:67678 Lsm3, 1010001J12Rik, 2610005D18Rik, 6030401D18Rik, S... 42.7 3e-04
hsa:27258 LSM3, SMX4, USS2, YLR438C; LSM3 homolog, U6 small nu... 42.7 3e-04
xla:100049097 lsm3; LSM3 homolog, U6 small nuclear RNA associa... 42.7 3e-04
ath:AT1G76860 small nuclear ribonucleoprotein, putative / snRN... 42.7 3e-04
bbo:BBOV_III006010 17.m07530; Sm domain containing protein; K1... 42.4 4e-04
xla:443945 lsmd1-a, MGC80306, lsmd1, pfaap2; LSM domain contai... 41.6 6e-04
bbo:BBOV_IV009630 23.m05873; snRNP Sm-like protein; K12624 U6 ... 41.2 9e-04
> tgo:TGME49_086560 u6 snRNA-associated Sm-like protein, putative
; K12626 U6 snRNA-associated Sm-like protein LSm7
Length=99
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 69/95 (72%), Positives = 84/95 (88%), Gaps = 0/95 (0%)
Query 15 MSSKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASR 74
M+SK+ RSVID +KFLN++VRVKFSGGRE+ G LKGHDAV NLVLD+TEEFLRDPED +
Sbjct 1 MTSKEARSVIDLNKFLNQRVRVKFSGGREITGVLKGHDAVSNLVLDETEEFLRDPEDPYK 60
Query 75 LLETTRSLGLVVARGSAIVLISPVDGVQRIENPFI 109
LL+ TR+LGL+VARG+A+VLISPVDG + I NPF+
Sbjct 61 LLDQTRTLGLIVARGTAVVLISPVDGTEEIANPFV 95
> bbo:BBOV_III001070 17.m07121; LSM domain containing protein;
K12626 U6 snRNA-associated Sm-like protein LSm7
Length=103
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/95 (58%), Positives = 75/95 (78%), Gaps = 0/95 (0%)
Query 16 SSKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRL 75
S +D +SVI +LNKKV VKFSGGREV+G L+GHD + NLVLD+TEEFLRDP+D R+
Sbjct 7 SFRDVKSVIKLDAYLNKKVYVKFSGGREVQGILRGHDVMSNLVLDETEEFLRDPDDLDRV 66
Query 76 LETTRSLGLVVARGSAIVLISPVDGVQRIENPFIG 110
+ TR LGL+VARG+++ +I PV+G ++I NPF+
Sbjct 67 TDKTRQLGLLVARGTSVTVIHPVEGAEKIANPFLA 101
> pfa:PFL0460w lsm7 homologue, putative; K12626 U6 snRNA-associated
Sm-like protein LSm7
Length=108
Score = 122 bits (307), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/96 (58%), Positives = 75/96 (78%), Gaps = 0/96 (0%)
Query 17 SKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLL 76
+KD + + D KF+N+K+RVKF GGREV GTL GHDA+ NLVLD TEE++RDP D+ +
Sbjct 12 NKDNKFMTDIKKFMNQKIRVKFDGGREVVGTLIGHDAIFNLVLDKTEEYIRDPNDSFVVT 71
Query 77 ETTRSLGLVVARGSAIVLISPVDGVQRIENPFIGVE 112
+ TRS+GL+VARG+++ LI+PV+G Q I NPFI E
Sbjct 72 DKTRSIGLIVARGTSVALITPVEGTQEISNPFITEE 107
> tpv:TP03_0732 U6 snRNA-associated protein; K12626 U6 snRNA-associated
Sm-like protein LSm7
Length=104
Score = 117 bits (293), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 77/94 (81%), Gaps = 0/94 (0%)
Query 16 SSKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRL 75
S +D +SVI+ +K LNK+V VKFSGGREV+G L+GHDA+ NLVLDDT E+L+D D+S+L
Sbjct 7 SFRDVKSVINLNKHLNKEVYVKFSGGREVKGVLRGHDAMSNLVLDDTVEYLKDSSDSSKL 66
Query 76 LETTRSLGLVVARGSAIVLISPVDGVQRIENPFI 109
R+LGL+VARG+++ ++ PV+G ++I+NPF+
Sbjct 67 TGEKRNLGLLVARGTSVTVVYPVEGTEKIDNPFL 100
> dre:573047 lsm7, fj64g01, wu:fj64g01, zgc:66405; LSM7 homolog,
U6 small nuclear RNA associated (S. cerevisiae); K12626 U6
snRNA-associated Sm-like protein LSm7
Length=103
Score = 111 bits (278), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/98 (55%), Positives = 71/98 (72%), Gaps = 3/98 (3%)
Query 15 MSSKDPR---SVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPED 71
M+ KD + S+ D SK+++K +RVKF GGRE G LKG D + NLVLD T E++RDP+D
Sbjct 1 MADKDKKKKESIFDLSKYIDKHIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDD 60
Query 72 ASRLLETTRSLGLVVARGSAIVLISPVDGVQRIENPFI 109
+L E TR LGLVV RG+++VLI P DG++ I NPFI
Sbjct 61 QYKLTEDTRQLGLVVCRGTSVVLICPQDGMEAIPNPFI 98
> hsa:51690 LSM7, YNL147W; LSM7 homolog, U6 small nuclear RNA
associated (S. cerevisiae); K12626 U6 snRNA-associated Sm-like
protein LSm7
Length=103
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 68/92 (73%), Gaps = 0/92 (0%)
Query 18 KDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLE 77
K S++D SK+++K +RVKF GGRE G LKG D + NLVLD T E++RDP+D +L E
Sbjct 7 KKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTE 66
Query 78 TTRSLGLVVARGSAIVLISPVDGVQRIENPFI 109
TR LGLVV RG+++VLI P DG++ I NPFI
Sbjct 67 DTRQLGLVVCRGTSVVLICPQDGMEAIPNPFI 98
> mmu:66094 Lsm7, 0910001B06Rik, 1110033F18Rik; LSM7 homolog,
U6 small nuclear RNA associated (S. cerevisiae)
Length=103
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 68/92 (73%), Gaps = 0/92 (0%)
Query 18 KDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLE 77
K S++D SK+++K +RVKF GGRE G LKG D + NLVLD T E++RDP+D +L E
Sbjct 7 KKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTE 66
Query 78 TTRSLGLVVARGSAIVLISPVDGVQRIENPFI 109
TR LGLVV RG+++VLI P DG++ I NPF+
Sbjct 67 DTRQLGLVVCRGTSVVLICPQDGMEAIPNPFV 98
> mmu:100041500 Gm10146; predicted gene 10146; K12626 U6 snRNA-associated
Sm-like protein LSm7
Length=103
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 68/92 (73%), Gaps = 0/92 (0%)
Query 18 KDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLE 77
K S++D SK+++K +RVKF GGRE G LKG D + NLVLD T E++RDP+D +L E
Sbjct 7 KKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTE 66
Query 78 TTRSLGLVVARGSAIVLISPVDGVQRIENPFI 109
TR LGLVV RG+++VLI P DG++ I NPF+
Sbjct 67 DTRQLGLVVCRGTSVVLICPQDGMEAIPNPFV 98
> mmu:100505147 u6 snRNA-associated Sm-like protein LSm7-like
Length=103
Score = 111 bits (277), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 68/92 (73%), Gaps = 0/92 (0%)
Query 18 KDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLE 77
K S++D SK+++K +RVKF GGRE G LKG D + NLVLD T E++RDP+D +L E
Sbjct 7 KKKESILDLSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTE 66
Query 78 TTRSLGLVVARGSAIVLISPVDGVQRIENPFI 109
TR LGLVV RG+++VLI P DG++ I NPF+
Sbjct 67 DTRQLGLVVCRGTSVVLICPQDGMEAIPNPFV 98
> xla:444555 lsm7, GC83430; LSM7 homolog, U6 small nuclear RNA
associated; K12626 U6 snRNA-associated Sm-like protein LSm7
Length=103
Score = 110 bits (276), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 68/92 (73%), Gaps = 0/92 (0%)
Query 18 KDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLE 77
K S++D SK+++K +RVKF GGRE G LKG D + NLVLD T E++RDP+D +L E
Sbjct 7 KKKESILDLSKYIDKTIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQYKLTE 66
Query 78 TTRSLGLVVARGSAIVLISPVDGVQRIENPFI 109
TR LGLVV RG+++VLI P DG++ I NPF+
Sbjct 67 DTRQLGLVVCRGTSVVLICPQDGMEAIPNPFV 98
> cel:ZK593.7 lsm-7; LSM Sm-like protein family member (lsm-7);
K12626 U6 snRNA-associated Sm-like protein LSm7
Length=104
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 48/87 (55%), Positives = 69/87 (79%), Gaps = 0/87 (0%)
Query 22 SVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRS 81
SV+D ++FL+K++RVKF GGRE G L+G D + N+VLDD E+LRDP++ S + + TR
Sbjct 12 SVVDLTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQ 71
Query 82 LGLVVARGSAIVLISPVDGVQRIENPF 108
LGL+VARG+AI ++SP DG+++I NPF
Sbjct 72 LGLIVARGTAITVVSPADGLEQIANPF 98
> ath:AT2G03870 small nuclear ribonucleoprotein, putative / snRNP,
putative / Sm protein, putative; K12626 U6 snRNA-associated
Sm-like protein LSm7
Length=99
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/92 (52%), Positives = 70/92 (76%), Gaps = 0/92 (0%)
Query 22 SVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRS 81
+V+D +KF++K V+VK +GGR+V GTLKG+D + NLVLD+ EF+RD +D + + TR
Sbjct 7 TVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRR 66
Query 82 LGLVVARGSAIVLISPVDGVQRIENPFIGVEA 113
LGL+V RG+A++L+SP DG + I NPF+ EA
Sbjct 67 LGLIVCRGTAVMLVSPTDGTEEIANPFVTAEA 98
> sce:YNL147W LSM7; Lsm (Like Sm) protein; part of heteroheptameric
complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic
Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex
part of U6 snRNP and possibly involved in processing tRNA,
snoRNA, and rRNA; K12626 U6 snRNA-associated Sm-like protein
LSm7
Length=115
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 59/96 (61%), Gaps = 3/96 (3%)
Query 8 PVEESTKMSSKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLR 67
P ++ K +++D +K+ + K+RVK GG+ V G LKG+D + NLVLDDT E++
Sbjct 12 PQQQRKKFEGPKREAILDLAKYKDSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMS 71
Query 68 DPEDASR---LLETTRSLGLVVARGSAIVLISPVDG 100
+P+D + + + R LGL V RG+ +V +S +G
Sbjct 72 NPDDENNTELISKNARKLGLTVIRGTILVSLSSAEG 107
> cpv:cgd7_3520 hypothetical protein ; K12626 U6 snRNA-associated
Sm-like protein LSm7
Length=73
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 7/66 (10%)
Query 1 PKYLFCAPVEESTKMSSKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLD 60
KY +E S+K S++ +KF NK+++VK GGREV G L+G DAV NLVLD
Sbjct 6 AKYYLSFNIEMSSK-------SILGLNKFNNKEIKVKLCGGREVIGILRGFDAVTNLVLD 58
Query 61 DTEEFL 66
+T E++
Sbjct 59 ETVEYM 64
> sce:YER146W LSM5; Lsm (Like Sm) protein; part of heteroheptameric
complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic
Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex
part of U6 snRNP and possibly involved in processing tRNA,
snoRNA, and rRNA; K12624 U6 snRNA-associated Sm-like protein
LSm5
Length=93
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 2/78 (2%)
Query 20 PRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETT 79
P VID K +N+KV + RE EGTL G D N++L+D E+L DPED SR +
Sbjct 8 PLEVID--KTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKVM 65
Query 80 RSLGLVVARGSAIVLISP 97
+ G ++ G+ I ++ P
Sbjct 66 QHHGRMLLSGNNIAILVP 83
> tgo:TGME49_114790 small nuclear ribonucleoprotein E/G, putative
; K11099 small nuclear ribonucleoprotein G
Length=93
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Query 25 DPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLET-TRSLG 83
D +F+ K++ V SGGR V G L+G+D N+VL++T E +P +++ T T +G
Sbjct 13 DLRRFMEKRLDVHLSGGRRVVGVLRGYDTFMNIVLENTVEVKGNPANSASSGGTETNEIG 72
Query 84 LVVARGSAIVLISPVDGVQ 102
VV RG++I+ +D V+
Sbjct 73 FVVVRGNSILYWECLDKVR 91
> dre:447922 zgc:103688; K11099 small nuclear ribonucleoprotein
G
Length=76
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVA 87
KF++KK+ +K +GGR V+G L+G D NLV+DDT E + ++G+VV
Sbjct 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGGQ--------MNTIGMVVI 62
Query 88 RGSAIVLISPVDGV 101
RG++I+++ ++ V
Sbjct 63 RGNSIIMLEALERV 76
> xla:779307 snrpg, MGC154809; small nuclear ribonucleoprotein
polypeptide G; K11099 small nuclear ribonucleoprotein G
Length=76
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 8/74 (10%)
Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVA 87
KF++KK+ +K +GGR+V+G L+G D NLVLD++ E S+G+VV
Sbjct 11 KFMDKKLSLKINGGRQVQGILRGFDPFMNLVLDESTEISGSG--------NQNSIGMVVI 62
Query 88 RGSAIVLISPVDGV 101
RG++I+++ ++ V
Sbjct 63 RGNSIIMLEALERV 76
> mmu:68011 Snrpg, 2810024K17Rik, AL022803, SMG; small nuclear
ribonucleoprotein polypeptide G; K11099 small nuclear ribonucleoprotein
G
Length=76
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVA 87
KF++KK+ +K +GGR V+G L+G D NLV+D+ E + ++G+VV
Sbjct 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ--------NNIGMVVI 62
Query 88 RGSAIVLISPVDGV 101
RG++I+++ ++ V
Sbjct 63 RGNSIIMLEALERV 76
> hsa:6637 SNRPG, MGC117317, SMG, Sm-G; small nuclear ribonucleoprotein
polypeptide G; K11099 small nuclear ribonucleoprotein
G
Length=76
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVA 87
KF++KK+ +K +GGR V+G L+G D NLV+D+ E + ++G+VV
Sbjct 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ--------NNIGMVVI 62
Query 88 RGSAIVLISPVDGV 101
RG++I+++ ++ V
Sbjct 63 RGNSIIMLEALERV 76
> dre:100331618 small nuclear ribonucleoprotein polypeptide G-like
Length=79
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 45/74 (60%), Gaps = 5/74 (6%)
Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVA 87
KF++KK+ +K +GGR V+G L+G D NLV+DDT E + + T ++V
Sbjct 11 KFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEMAPGGQ-----MNTIGMWSVLVI 65
Query 88 RGSAIVLISPVDGV 101
RG++I+++ ++ V
Sbjct 66 RGNSIIMLEALERV 79
> pfa:MAL8P1.48 small nuclear ribonucleoprotein, putative; K11099
small nuclear ribonucleoprotein G
Length=83
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 9/78 (11%)
Query 25 DPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGL 84
D KF+ K++++ +G R+V G L+G+D NLVLD+T E +D + +G+
Sbjct 13 DFRKFMEKRLQIYLNGNRQVVGILRGYDTFMNLVLDNTMEIKKDEQ---------IDIGV 63
Query 85 VVARGSAIVLISPVDGVQ 102
VV RG++I +D V
Sbjct 64 VVIRGNSISYWECLDKVN 81
> ath:AT3G11500 small nuclear ribonucleoprotein G, putative /
snRNP-G, putative / Sm protein G, putative; K11099 small nuclear
ribonucleoprotein G
Length=79
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%), Gaps = 9/79 (11%)
Query 25 DPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGL 84
D K+++KK+++K + R V GTL+G D NLV+D+T E D + +G+
Sbjct 9 DLKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEVNGDDK---------TDIGM 59
Query 85 VVARGSAIVLISPVDGVQR 103
VV RG++IV + ++ V R
Sbjct 60 VVIRGNSIVTVEALEPVGR 78
> cel:Y71F9B.4 snr-7; Small Nuclear Ribonucleoprotein family member
(snr-7); K11099 small nuclear ribonucleoprotein G
Length=77
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 8/70 (11%)
Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVA 87
K+++K++ +K +G R V G L+G D N+V+D+ E+ +D + +LG+ V
Sbjct 11 KYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQKDG--------GSVNLGMTVI 62
Query 88 RGSAIVLISP 97
RG+++V++ P
Sbjct 63 RGNSVVIMEP 72
> bbo:BBOV_II007600 18.m06632; small nuclear ribonucleoprotein
G; K11099 small nuclear ribonucleoprotein G
Length=80
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query 25 DPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGL 84
D +++ K++ V +G R V G L+G+D N+VLD+ + D E TR LG+
Sbjct 10 DLRRYMEKRLDVHLTGSRHVVGVLRGYDTFMNVVLDNALQIEGD--------EQTR-LGM 60
Query 85 VVARGSAIVLISPVDGVQ 102
VV RG+AIV +D V
Sbjct 61 VVIRGNAIVYWECLDKVH 78
> tgo:TGME49_098970 LSM domain-containing protein ; K12622 U6
snRNA-associated Sm-like protein LSm3
Length=96
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query 30 LNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEE----FLRDPEDAS-RLLETTRSLGL 84
L+++V +K G REV G L +D N+VL D EE DP + +TTR L L
Sbjct 18 LDERVTIKCRGDREVVGKLHAYDMHLNMVLGDVEEVATTVTSDPLTGDEQTKKTTRRLPL 77
Query 85 VVARGSAIVLISPVD 99
+ RG AI+L++PV+
Sbjct 78 IFLRGDAIILVAPVN 92
> hsa:100130932 small nuclear ribonucleoprotein G-like protein
Length=74
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 8/72 (11%)
Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVA 87
KF +KK +K +GGR V+G L+G D NLV+D+ E + +++G+V
Sbjct 11 KFTDKKFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQ--------KNIGMVEI 62
Query 88 RGSAIVLISPVD 99
RG++I+++ ++
Sbjct 63 RGNSIIMLEALE 74
> ath:AT4G20440 smB; smB (small nuclear ribonucleoprotein associated
protein B); K11086 small nuclear ribonucleoprotein B
and B'
Length=257
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLL----ETTRSLG 83
+F+N ++RV GR++ G D NLVL D EEF + P + + E R+LG
Sbjct 11 QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLG 70
Query 84 LVVARGSAIVLIS 96
LV+ RG ++ ++
Sbjct 71 LVLLRGEEVISMT 83
> sce:YFL017W-A SMX2, SNP2, YFL018W-A; Sm G; SmG; K11099 small
nuclear ribonucleoprotein G
Length=77
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 7/75 (9%)
Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGL-VV 86
K+++KK+ + +G R+V G L+G+D N+VLDD E + ED + LGL V
Sbjct 9 KYMDKKILLNINGSRKVAGILRGYDIFLNVVLDDAMEI--NGEDPA----NNHQLGLQTV 62
Query 87 ARGSAIVLISPVDGV 101
RG++I+ + +D +
Sbjct 63 IRGNSIISLEALDAI 77
> bbo:BBOV_III010410 17.m07899; LSM domain containing protein;
K12622 U6 snRNA-associated Sm-like protein LSm3
Length=89
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 7/88 (7%)
Query 17 SKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLR----DPEDA 72
SK+P VI + L+++V +K GGRE+ G L +D CN++L D E DP
Sbjct 2 SKEPMDVIRVN--LDERVYLKCKGGREIVGQLHAYDEHCNMLLSDAIETFTSVELDPTTN 59
Query 73 SRLLE-TTRSLGLVVARGSAIVLISPVD 99
+ T++ G+V RG A++L+S +
Sbjct 60 QEVTTITSKDSGVVFVRGDALILLSHAN 87
> cpv:cgd7_3970 small nuclear ribonucleoprotein ; K11099 small
nuclear ribonucleoprotein G
Length=62
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 9/67 (13%)
Query 36 VKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVARGSAIVLI 95
VK +G R++ G+L+G+D NLVL++T E L T +S+G V RG+++++
Sbjct 4 VKLNGNRQIIGSLRGYDNFMNLVLENTTEVLD---------STKKSIGTTVIRGNSVIMW 54
Query 96 SPVDGVQ 102
+D V+
Sbjct 55 ECIDKVK 61
> xla:414488 lsmd1-b, MGC81227, pfaap2; LSM domain containing
1
Length=111
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query 29 FLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVAR 88
LN+ +R++ + GR + G D CN++L +EFLR P D+ R+ E R LGL +
Sbjct 36 LLNRNMRIQMTDGRSLIGCFLCTDRDCNVILGSAQEFLR-PSDSFRIRE-PRVLGLAMVP 93
Query 89 GSAIVLI 95
G IV I
Sbjct 94 GHHIVSI 100
> ath:AT2G23930 SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN
G); K04796 small nuclear ribonucleoprotein
Length=67
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 9/74 (12%)
Query 30 LNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVARG 89
++KK+++K + R V GTL+G D NLV+D+T E + D + +G+VV RG
Sbjct 1 MDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVEV--NGNDKT-------DIGMVVIRG 51
Query 90 SAIVLISPVDGVQR 103
++IV + ++ V R
Sbjct 52 NSIVTVEALEPVGR 65
> tpv:TP02_0362 small nuclear ribonucleoprotein B; K11086 small
nuclear ribonucleoprotein B and B'
Length=155
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query 29 FLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEF-LRDPEDASRLLETTRSLGLVVA 87
+L VRV R+ GTL +D NLVL D EEF + +D +R E R+LG V+
Sbjct 11 WLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNR-TEVKRTLGFVLL 69
Query 88 RGSAIVLI---SPVD 99
RG IV SPV+
Sbjct 70 RGENIVSFTAKSPVN 84
> ath:AT5G44500 small nuclear ribonucleoprotein associated protein
B, putative / snRNP-B, putative / Sm protein B, putative;
K11086 small nuclear ribonucleoprotein B and B'
Length=254
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDP-----EDASRLLETTRSL 82
+F+N ++RV GR++ G D NLVL D EEF + P + + E R+L
Sbjct 11 QFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREERRTL 70
Query 83 GLVVARGSAIVLIS 96
GLV+ RG ++ ++
Sbjct 71 GLVLLRGEEVISMT 84
> mmu:76522 Naa38, 2010003I05Rik, AW214405, Lsm8; N(alpha)-acetyltransferase
38, NatC auxiliary subunit; K12627 U6 snRNA-associated
Sm-like protein LSm8
Length=96
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)
Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRS-----L 82
++N+ V V S GR + GTLKG D NL+LD++ E R+ +++ L
Sbjct 7 NYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE---------RVFSSSQGVEQVVL 57
Query 83 GLVVARGSAIVLISPVD 99
GL + RG + +I +D
Sbjct 58 GLYIVRGDNVAVIGEID 74
> hsa:51691 NAA38, FLJ33242, LSM8; N(alpha)-acetyltransferase
38, NatC auxiliary subunit; K12627 U6 snRNA-associated Sm-like
protein LSm8
Length=96
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 14/77 (18%)
Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRS-----L 82
++N+ V V S GR + GTLKG D NL+LD++ E R+ +++ L
Sbjct 7 NYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHE---------RVFSSSQGVEQVVL 57
Query 83 GLVVARGSAIVLISPVD 99
GL + RG + +I +D
Sbjct 58 GLYIVRGDNVAVIGEID 74
> mmu:666609 Gm8186, EG666609; predicted gene 8186; K11099 small
nuclear ribonucleoprotein G
Length=76
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 8/74 (10%)
Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVA 87
K +++ +K +GGR V+G L+G D NLV+D+ E + ++G+VV
Sbjct 11 KVYGQELSLKLNGGRHVQGILQGFDPFMNLVIDECVEMATSGQQ--------NNIGMVVI 62
Query 88 RGSAIVLISPVDGV 101
RG++I+++ ++ V
Sbjct 63 RGNSIIMLEALERV 76
> pfa:PF14_0146 ribonucleoprotein, putative; K11086 small nuclear
ribonucleoprotein B and B'
Length=201
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 0/65 (0%)
Query 29 FLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVAR 88
+L +VRV S R GT +D N+VL D EEF + + L E R +GL++ R
Sbjct 10 WLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSLKEIKRVVGLILIR 69
Query 89 GSAIV 93
G IV
Sbjct 70 GENIV 74
> cpv:cgd1_2910 hypothetical protein ; K11086 small nuclear ribonucleoprotein
B and B'
Length=139
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query 27 SKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVV 86
K++N ++RV R + G L D NLVL D +E+ R + E RSLGL++
Sbjct 2 QKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEY-RRVKKGEESKELKRSLGLIM 60
Query 87 ARGSAIV 93
RG IV
Sbjct 61 LRGENIV 67
> sce:YLR438C-A LSM3, SMX4, USS2; Lsm (Like Sm) protein; part
of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or
8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear
Lsm8p complex part of U6 snRNP and possibly involved in processing
tRNA, snoRNA, and rRNA; K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=89
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 1/67 (1%)
Query 30 LNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVARG 89
L+++V +K G R + GTL+ D+ CN+VL D E + + L E+ R +V RG
Sbjct 12 LDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNN-EELSESERRCEMVFIRG 70
Query 90 SAIVLIS 96
+ LIS
Sbjct 71 DTVTLIS 77
> xla:414679 naa38, MGC82379, lsm8; N(alpha)-acetyltransferase
38, NatC auxiliary subunit; K12627 U6 snRNA-associated Sm-like
protein LSm8
Length=96
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 14/77 (18%)
Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRS-----L 82
++N+ V V + GR + GTLKG D NL+LD++ E R+ +++ L
Sbjct 7 NYINRTVAVITADGRMIVGTLKGFDQTINLILDESHE---------RVFSSSQGVEQVVL 57
Query 83 GLVVARGSAIVLISPVD 99
GL + RG + +I +D
Sbjct 58 GLYIVRGDNVAVIGEID 74
> cel:Y73B6BL.32 lsm-8; LSM Sm-like protein family member (lsm-8);
K12627 U6 snRNA-associated Sm-like protein LSm8
Length=98
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Query 29 FLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVAR 88
++N+ V V GR + G LKG D + NLV++D E R + +L T LGL + R
Sbjct 8 YMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHE--RSYSETEGVL--TTPLGLYIIR 63
Query 89 GSAIVLISPVD 99
G + +I +D
Sbjct 64 GENVAIIGEID 74
> mmu:67678 Lsm3, 1010001J12Rik, 2610005D18Rik, 6030401D18Rik,
SMX4, USS2; LSM3 homolog, U6 small nuclear RNA associated (S.
cerevisiae); K12622 U6 snRNA-associated Sm-like protein LSm3
Length=102
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query 10 EESTKMSSKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLR-- 67
++ T + ++P +I S L++++ VK RE+ G L +D N++L D EE +
Sbjct 7 QQQTTNTVEEPLDLIRLS--LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTI 64
Query 68 --DPEDASRLLETT-RSLGLVVARGSAIVLISP 97
D E + ++T R++ ++ RG +VL++P
Sbjct 65 EIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAP 97
> hsa:27258 LSM3, SMX4, USS2, YLR438C; LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae); K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=102
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query 10 EESTKMSSKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLR-- 67
++ T + ++P +I S L++++ VK RE+ G L +D N++L D EE +
Sbjct 7 QQQTTNTVEEPLDLIRLS--LDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTI 64
Query 68 --DPEDASRLLETT-RSLGLVVARGSAIVLISP 97
D E + ++T R++ ++ RG +VL++P
Sbjct 65 EIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAP 97
> xla:100049097 lsm3; LSM3 homolog, U6 small nuclear RNA associated;
K12622 U6 snRNA-associated Sm-like protein LSm3
Length=102
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query 10 EESTKMSSKDPRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLR-- 67
++ T + ++P +I S L++++ VK RE+ G L +D N++L D EE +
Sbjct 7 QQQTTNTVEEPLDLIRLS--LDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTI 64
Query 68 --DPEDASRLLETT-RSLGLVVARGSAIVLISP 97
D E + ++T R++ ++ RG +VL++P
Sbjct 65 EIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAP 97
> ath:AT1G76860 small nuclear ribonucleoprotein, putative / snRNP,
putative / Sm protein, putative; K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=98
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query 15 MSSKDPRSVIDPSKF----LNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLR--- 67
MS ++ +V +P L++++ VK RE+ G L D N++L D EE +
Sbjct 1 MSGEEEATVREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60
Query 68 -DPEDASRLLETT-RSLGLVVARGSAIVLISP 97
D E ++ TT R++ + RG ++L+SP
Sbjct 61 IDDETYEEIVRTTKRTIEFLFVRGDGVILVSP 92
> bbo:BBOV_III006010 17.m07530; Sm domain containing protein;
K11086 small nuclear ribonucleoprotein B and B'
Length=159
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query 27 SKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFL----RDPEDASRLLETTRSL 82
++L +VRV GR+ GT D NLVL D EEF + P+ +E R+L
Sbjct 9 QQWLQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQK--VELKRTL 66
Query 83 GLVVARGSAIV 93
G ++ RG IV
Sbjct 67 GFIMLRGENIV 77
> xla:443945 lsmd1-a, MGC80306, lsmd1, pfaap2; LSM domain containing
1
Length=113
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query 28 KFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETTRSLGLVVA 87
LN+ +R++ + GR + G D CN++L +EFLR P D+ + E R LGL +
Sbjct 35 SLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGSAQEFLR-PSDSFPVRE-PRVLGLAMV 92
Query 88 RGSAIVLI 95
G IV I
Sbjct 93 PGHHIVSI 100
> bbo:BBOV_IV009630 23.m05873; snRNP Sm-like protein; K12624 U6
snRNA-associated Sm-like protein LSm5
Length=87
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query 20 PRSVIDPSKFLNKKVRVKFSGGREVEGTLKGHDAVCNLVLDDTEEFLRDPEDASRLLETT 79
P +++D K L KV + G +E+ G L+G D N+VLDD E+ P +ETT
Sbjct 12 PLALVD--KCLGTKVWIIMKGEKEITGVLRGFDDYMNVVLDDVTEYTFKPTG----VETT 65
Query 80 RSLGLVVARGSAIVLISPVD 99
L + G+ I +I P D
Sbjct 66 E-LKDALVNGTNIAMIVPGD 84
Lambda K H
0.316 0.136 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2047611720
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40