bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_2635_orf1
Length=89
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_034520 U2 snRNP auxiliary factor or splicing factor... 135 4e-32
bbo:BBOV_II004960 18.m06413; RNA recognition motif (RRM)-conta... 118 5e-27
tpv:TP04_0035 U2 small nuclear ribonucleoprotein, auxiliary fa... 116 2e-26
pfa:PF14_0656 U2 snRNP auxiliary factor, putative; K12837 spli... 105 5e-23
cpv:cgd2_1480 splicing factor U2AF U2 SnRNP auxiliary factor l... 83.2 2e-16
ath:AT1G60900 U2 snRNP auxiliary factor large subunit, putativ... 77.0 1e-14
ath:AT1G60830 U2 snRNP auxiliary factor large subunit, putative 73.9 1e-13
ath:AT4G36690 ATU2AF65A; RNA binding / nucleic acid binding / ... 70.9 9e-13
mmu:16589 Uhmk1, 4732477C12Rik, 4930500M09Rik, AA673513, AI449... 60.5 1e-09
cel:Y92C3B.2 uaf-1; U2AF splicing factor family member (uaf-1)... 59.7 2e-09
dre:767721 uhmk1, MGC153241, zgc:153241; U2AF homology motif (... 57.4 1e-08
hsa:127933 UHMK1, DKFZp434C1613, FLJ23015, KIS, KIST; U2AF hom... 56.2 2e-08
dre:402989 u2af2b, MGC77804, wu:fb73g02, zgc:77804; U2 small n... 50.4 1e-06
tpv:TP03_0201 hypothetical protein 50.1 2e-06
bbo:BBOV_IV007070 23.m05938; hypothetical protein 49.7 2e-06
xla:380287 u2af2, MGC53441, u2af65; U2 small nuclear RNA auxil... 49.3 3e-06
mmu:631331 Gm7061, EG631331; predicted gene 7061 48.5
mmu:22185 U2af2, 65kDa, MGC118033; U2 small nuclear ribonucleo... 47.8 1e-05
hsa:11338 U2AF2, U2AF65; U2 small nuclear RNA auxiliary factor... 47.4 1e-05
dre:557103 u2af2a, MGC110115, zgc:110115; U2 small nuclear RNA... 47.0 1e-05
cpv:cgd6_1680 splicing factor U2AF U2 snRNP auxiliary factor l... 35.0 0.059
pfa:PF07_0066 conserved Plasmodium protein, unknown function 34.7 0.082
hsa:29890 RBM15B, HUMAGCGB, OTT3; RNA binding motif protein 15... 33.5 0.17
mmu:109095 Rbm15b, 1810017N16Rik; RNA binding motif protein 15... 33.5 0.17
tgo:TGME49_002770 RNA-binding protein, putative ; K12838 poly(... 33.1 0.25
tgo:TGME49_112530 splicing factor protein, putative ; K13091 R... 32.7 0.26
tgo:TGME49_114050 splicing factor U2AF 65 kDa subunit, putative 32.0 0.49
hsa:84991 RBM17, DKFZp686F13131, MGC14439, SPF45; RNA binding ... 31.6 0.59
mmu:76938 Rbm17, 2700027J02Rik; RNA binding motif protein 17; ... 31.6 0.65
tpv:TP03_0691 splicing factor; K13091 RNA-binding protein 39 31.6
cel:Y47G6A.20 rnp-6; RNP (RRM RNA binding domain) containing f... 31.6 0.72
pfa:PFI0820c RNA binding protein, putative 31.2 0.84
dre:100330844 mCG19533-like; K13190 RNA-binding protein 15 30.8
dre:100136872 rbm15b, zgc:175165; RNA binding motif protein 15B 30.8 1.2
ath:AT2G16940 RNA recognition motif (RRM)-containing protein 30.0 1.8
dre:387255 rbm19, npo; RNA binding motif protein 19; K14787 mu... 30.0 1.9
tpv:TP04_0540 hypothetical protein 29.6 2.3
cpv:cgd1_2730 Ro ribonucleoprotein-binding protein 1, RNA bind... 29.6 2.5
ath:AT5G09880 RNA recognition motif (RRM)-containing protein; ... 29.6 2.5
cel:Y82E9BR.2 hypothetical protein 29.3 3.0
tgo:TGME49_036910 U2 snRNP auxiliary factor small subunit, put... 29.3 3.0
xla:447356 MGC130690; MGC84102 protein; K12840 splicing factor 45 29.3
tgo:TGME49_108920 U2 small nuclear ribonucleoprotein auxiliary... 28.9 3.9
xla:733282 rbm17; RNA binding motif protein 17 28.9
pfa:MAL13P1.120 splicing factor, putative; K13091 RNA-binding ... 28.9 4.3
hsa:135295 SRSF12, FLJ14459, FLJ33484, FLJ41221, RP11-63L7.3, ... 28.5 4.9
ath:AT3G13570 SCL30a; SCL30a; RNA binding / nucleic acid bindi... 28.5 5.5
xla:495068 srsf12, sfrs13b, srrp35; serine/arginine-rich splic... 28.1 6.2
bbo:BBOV_IV007810 23.m06352; U2 splicing factor subunit; K1283... 28.1 7.1
ath:AT1G55310 SR33; SR33; RNA binding / protein binding 28.1 7.7
> tgo:TGME49_034520 U2 snRNP auxiliary factor or splicing factor,
putative ; K12837 splicing factor U2AF 65 kDa subunit
Length=553
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 72/85 (84%), Gaps = 0/85 (0%)
Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRR 64
+EA DI+ EAEK+G LEEVL+P+PNEDLSY+ GVGKVFL Y DVT+AR+AQ MLNGRR
Sbjct 469 YEAICDDIKQEAEKHGALEEVLVPKPNEDLSYREGVGKVFLRYSDVTAARKAQLMLNGRR 528
Query 65 FDQTRVVCAAFFPEQKFKDGQYTLT 89
FD RVVCAAFFPE+KF G+YTLT
Sbjct 529 FDSNRVVCAAFFPEEKFAAGRYTLT 553
> bbo:BBOV_II004960 18.m06413; RNA recognition motif (RRM)-containing
protein; K12837 splicing factor U2AF 65 kDa subunit
Length=383
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 58/86 (67%), Positives = 68/86 (79%), Gaps = 3/86 (3%)
Query 5 HEAAVKD-IRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGR 63
HE VKD I EA+KYG LE+++IPRPN+DLSYK GVGKVFL +GD S+RRAQYMLNGR
Sbjct 300 HE--VKDAIMEEAKKYGHLEDIVIPRPNDDLSYKEGVGKVFLKFGDEISSRRAQYMLNGR 357
Query 64 RFDQTRVVCAAFFPEQKFKDGQYTLT 89
FD R+VCAAFFP +F G+YTL
Sbjct 358 VFDGNRIVCAAFFPLDRFLKGKYTLV 383
> tpv:TP04_0035 U2 small nuclear ribonucleoprotein, auxiliary
factor, large subunit; K12837 splicing factor U2AF 65 kDa subunit
Length=380
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 51/88 (57%), Positives = 70/88 (79%), Gaps = 0/88 (0%)
Query 1 STSSHEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYML 60
S ++ V+ ++ EA+KYGPL+EV+IPRP++DL++K GVGKVF+ Y D+ SAR+AQYM
Sbjct 292 SDYNYNEIVRLVKEEAQKYGPLQEVVIPRPDKDLTFKEGVGKVFIRYEDLLSARKAQYMF 351
Query 61 NGRRFDQTRVVCAAFFPEQKFKDGQYTL 88
NGR FD+ R+VC+AFFPE F G+YTL
Sbjct 352 NGRVFDKNRIVCSAFFPEDLFITGKYTL 379
> pfa:PF14_0656 U2 snRNP auxiliary factor, putative; K12837 splicing
factor U2AF 65 kDa subunit
Length=833
Score = 105 bits (261), Expect = 5e-23, Method: Composition-based stats.
Identities = 48/87 (55%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query 3 SSHEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNG 62
S +E +K+++ EAEKYG L+ ++IP+PN+DLSY GVGK+FL Y D +AR+AQYM NG
Sbjct 748 SQYEEILKEVKEEAEKYGTLQNIVIPKPNKDLSYTEGVGKIFLHYADEATARKAQYMFNG 807
Query 63 RRFDQTRVVCAAFFPEQKFKDGQYTLT 89
R F++ RVVCAAF+ E+ F G+Y L+
Sbjct 808 RLFEK-RVVCAAFYSEEHFLKGKYVLS 833
> cpv:cgd2_1480 splicing factor U2AF U2 SnRNP auxiliary factor
large subunit, RRM domain ; K12837 splicing factor U2AF 65
kDa subunit
Length=438
Score = 83.2 bits (204), Expect = 2e-16, Method: Composition-based stats.
Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%)
Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPN--EDLSYKPGVGKVFLVYGDVTSARRAQYMLNG 62
+ + + +RSEAE YG + E+ PRP E+ G GKVF+ + D+T+ARRAQY NG
Sbjct 342 YNSTLDSVRSEAEVYGTILEIFCPRPKVIEEFHSCSGAGKVFIYFSDITAARRAQYQFNG 401
Query 63 RRFDQTRVVCAAFFPEQKFKDGQYTL 88
R FD + V A FFP +K+ +Y++
Sbjct 402 RVFDNIKTVSATFFPLEKYLKHEYSV 427
> ath:AT1G60900 U2 snRNP auxiliary factor large subunit, putative;
K12837 splicing factor U2AF 65 kDa subunit
Length=589
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/78 (47%), Positives = 51/78 (65%), Gaps = 1/78 (1%)
Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQT 68
++D+R E K+G L V+IPRPN D PGVGKVFL Y DV + +A+ +NGR+F
Sbjct 511 MEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGN 570
Query 69 RVVCAAFFPEQKFKDGQY 86
+VV A ++PE K+ G Y
Sbjct 571 QVV-AVYYPEDKYAQGDY 587
> ath:AT1G60830 U2 snRNP auxiliary factor large subunit, putative
Length=111
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQT 68
++D+ E K+G L V+IPRPN D PGVGKVFL Y DV + +A+ +NGR+F
Sbjct 33 MEDMSQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGN 92
Query 69 RVVCAAFFPEQKFKDGQY 86
+VV A ++PE K+ G Y
Sbjct 93 QVV-AVYYPEDKYAQGDY 109
> ath:AT4G36690 ATU2AF65A; RNA binding / nucleic acid binding
/ nucleotide binding
Length=573
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQT 68
++D+R E K+G L V+IPRP+ + G+GKVFL Y D + RA++ +NGR+F
Sbjct 495 MEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFGGN 554
Query 69 RVVCAAFFPEQKFKDGQY 86
VV A ++PE KF+ G Y
Sbjct 555 EVV-AVYYPEDKFEQGDY 571
> mmu:16589 Uhmk1, 4732477C12Rik, 4930500M09Rik, AA673513, AI449218,
AU021979, KIS, Kist; U2AF homology motif (UHM) kinase
1 (EC:2.7.11.1); K08877 U2AF homology motif (UHM) kinase 1
[EC:2.7.11.1]
Length=419
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 7/80 (8%)
Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRR 64
+E V+D++ E +KYGP+ +L+P+ N PG G+VF+ Y + ++ AQ +L GR
Sbjct 340 YEDVVEDVKEECQKYGPVVSLLVPKEN------PGRGQVFVEYANAGDSKAAQKLLTGRM 393
Query 65 FDQTRVVCAAFFPEQKFKDG 84
FD VV A F+P +K G
Sbjct 394 FDGKFVV-ATFYPLSAYKRG 412
> cel:Y92C3B.2 uaf-1; U2AF splicing factor family member (uaf-1);
K12837 splicing factor U2AF 65 kDa subunit
Length=474
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRR 64
+E ++D+R E KYG + + IPRP ED PGVGKVF+ + + +RAQ L GR+
Sbjct 395 YEEILEDVRDECSKYGIVRSLEIPRPYEDHPV-PGVGKVFVEFASTSDCQRAQAALTGRK 453
Query 65 FDQTRVVCAAFFPEQKFKDGQY 86
F R V +++ K+ + Q+
Sbjct 454 F-ANRTVVTSYYDVDKYHNRQF 474
> dre:767721 uhmk1, MGC153241, zgc:153241; U2AF homology motif
(UHM) kinase 1 (EC:2.7.11.1); K08877 U2AF homology motif (UHM)
kinase 1 [EC:2.7.11.1]
Length=410
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRR 64
+E ++D++ E +KYG + +LIP+ N PG G+VF+ Y + ++ AQ +L GR
Sbjct 331 YEDIIEDMKEECQKYGTVVSLLIPKEN------PGKGQVFVEYANAGDSKEAQRLLTGRT 384
Query 65 FDQTRVVCAAFFPEQKFKDG 84
FD + V A F+P +K G
Sbjct 385 FD-GKFVVATFYPLGAYKRG 403
> hsa:127933 UHMK1, DKFZp434C1613, FLJ23015, KIS, KIST; U2AF homology
motif (UHM) kinase 1 (EC:2.7.11.1); K08877 U2AF homology
motif (UHM) kinase 1 [EC:2.7.11.1]
Length=345
Score = 56.2 bits (134), Expect = 2e-08, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query 13 RSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTRVVC 72
+ E +KYGP+ +L+P+ N PG G+VF+ Y + ++ AQ +L GR FD + V
Sbjct 274 KEECQKYGPVVSLLVPKEN------PGRGQVFVEYANAGDSKAAQKLLTGRMFD-GKFVV 326
Query 73 AAFFPEQKFKDG 84
A F+P +K G
Sbjct 327 ATFYPLSAYKRG 338
> dre:402989 u2af2b, MGC77804, wu:fb73g02, zgc:77804; U2 small
nuclear RNA auxiliary factor 2b; K12837 splicing factor U2AF
65 kDa subunit
Length=475
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRR 64
+E V+D++ E KYG ++ + IPRP + L PG GK+F+ + V +++A L GR+
Sbjct 395 YEEIVEDVKEECSKYGQVKSIEIPRPVDGLDI-PGTGKIFVEFTSVYDSQKAMQGLTGRK 453
Query 65 FDQTRVVCAAF 75
F RVV +
Sbjct 454 F-ANRVVVTKY 463
> tpv:TP03_0201 hypothetical protein
Length=509
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLS------YKP-GVGKVFLVYGDVTSARRAQYMLN 61
+ D+R E E YG + V +PR + L+ + P VG F+++ V SA +A+ +L+
Sbjct 383 IDDVRCECELYGVVLRVELPRVPKGLTEEEMKAFDPTSVGSAFVLFSTVESASKARKVLD 442
Query 62 GRRFDQTRVVCAAFFPEQKFKDGQY 86
GR+F Q R V A FF E F G++
Sbjct 443 GRKFGQ-RTVHAHFFSELYFLTGKF 466
> bbo:BBOV_IV007070 23.m05938; hypothetical protein
Length=400
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 8/86 (9%)
Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLSYK-------PGVGKVFLVYGDVTSARRAQYMLN 61
+ D+R E E+YGP+ V +PR + L+ VG F+++ ++ A +A+ +L+
Sbjct 279 IDDVRCECEEYGPVVRVEMPRVPKGLTLDEIRNMDFSAVGCAFVLFSNIEGASKARKVLD 338
Query 62 GRRFDQTRVVCAAFFPEQKFKDGQYT 87
GR+F R+V FF E F G+++
Sbjct 339 GRKFGH-RIVECHFFSELLFHVGEFS 363
> xla:380287 u2af2, MGC53441, u2af65; U2 small nuclear RNA auxiliary
factor 2; K12837 splicing factor U2AF 65 kDa subunit
Length=456
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRR 64
+E V+D+R E KYG ++ + IPRP + + PG GK+F+ + V ++A L GR+
Sbjct 376 YEEIVEDVRDECGKYGAVKSIEIPRPVDGVEV-PGCGKIFVEFTSVFDCQKAMQGLTGRK 434
Query 65 FDQTRVVCAAF 75
F RVV +
Sbjct 435 F-ANRVVVTKY 444
> mmu:631331 Gm7061, EG631331; predicted gene 7061
Length=730
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQT 68
V D+R E KYG ++ + IPRP + + PG GK+F+ + V ++A L GR+F
Sbjct 654 VDDVRDECNKYGLVKSIEIPRPMDGVEV-PGCGKIFVEFTSVIDCQKAMQGLTGRKFANR 712
Query 69 RVV 71
VV
Sbjct 713 VVV 715
> mmu:22185 U2af2, 65kDa, MGC118033; U2 small nuclear ribonucleoprotein
auxiliary factor (U2AF) 2; K12837 splicing factor
U2AF 65 kDa subunit
Length=475
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQT 68
V+D+R E KYG ++ + IPRP + + PG GK+F+ + V ++A L GR+F
Sbjct 399 VEDVRDECSKYGLVKSIEIPRPVDGVEV-PGCGKIFVEFTSVFDCQKAMQGLTGRKF-AN 456
Query 69 RVVCAAF 75
RVV +
Sbjct 457 RVVVTKY 463
> hsa:11338 U2AF2, U2AF65; U2 small nuclear RNA auxiliary factor
2; K12837 splicing factor U2AF 65 kDa subunit
Length=471
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQT 68
V+D+R E KYG ++ + IPRP + + PG GK+F+ + V ++A L GR+F
Sbjct 395 VEDVRDECSKYGLVKSIEIPRPVDGVEV-PGCGKIFVEFTSVFDCQKAMQGLTGRKF-AN 452
Query 69 RVVCAAF 75
RVV +
Sbjct 453 RVVVTKY 459
> dre:557103 u2af2a, MGC110115, zgc:110115; U2 small nuclear RNA
auxiliary factor 2a; K12837 splicing factor U2AF 65 kDa subunit
Length=465
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQT 68
V+D+R E KYG ++ + IPRP + L PG GK+F+ + V +++A L GR+
Sbjct 389 VEDVRDECSKYGQVKSIEIPRPVDGLDI-PGTGKIFVEFMSVFDSQKAMQGLTGRK-SAN 446
Query 69 RVVCAAF 75
RVV +
Sbjct 447 RVVVTKY 453
> cpv:cgd6_1680 splicing factor U2AF U2 snRNP auxiliary factor
large subunit; 3 RRM domains
Length=492
Score = 35.0 bits (79), Expect = 0.059, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query 3 SSHEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYK-----PGVGKVFLVYGDVTSARRAQ 57
S++ + ++I + KYG + + IP P LS K P G+ F+ + +V SA +A+
Sbjct 378 STYSSIHEEIHEKCLKYGEIYKTTIPIPERALSNKDQFNDPYFGRAFIFFYNVESAIKAK 437
Query 58 YMLNGRRFDQTRVVCAAFFPEQKFKDG 84
L RF R + +++ E +F G
Sbjct 438 LDLFKMRF-LGRNMKISYYCEHEFLHG 463
> pfa:PF07_0066 conserved Plasmodium protein, unknown function
Length=1125
Score = 34.7 bits (78), Expect = 0.082, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query 23 EEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTRVVCAAFFPEQKF 81
EE + PN DL+ +G F+ + ++ SA +A+ L+GR+F ++ A +F E+KF
Sbjct 1033 EEEDLTHPNYDLT---SIGCAFIHFENIESATKARKELSGRKFG-ANIIEANYFSEKKF 1087
> hsa:29890 RBM15B, HUMAGCGB, OTT3; RNA binding motif protein
15B; K13190 RNA-binding protein 15
Length=890
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGR 63
H + ++R EKYG +EEV+I RP + G FL + ++ A RA+ ++GR
Sbjct 346 HSVSEVELRRAFEKYGIIEEVVIKRP----ARGQGGAYAFLKFQNLDMAHRAKVAMSGR 400
> mmu:109095 Rbm15b, 1810017N16Rik; RNA binding motif protein
15B; K13190 RNA-binding protein 15
Length=887
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGR 63
H + ++R EKYG +EEV+I RP + G FL + ++ A RA+ ++GR
Sbjct 342 HSVSEVELRRAFEKYGIIEEVVIKRP----ARGQGGAYAFLKFQNLDMAHRAKVAMSGR 396
> tgo:TGME49_002770 RNA-binding protein, putative ; K12838 poly(U)-binding-splicing
factor PUF60
Length=532
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query 11 DIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTRV 70
++R E K+G ++ V + E + ++F+ + D++ AR A L+GR F R
Sbjct 463 EVREECSKFGSIKRVEVHTLKETV-------RIFVEFSDLSGAREAIPSLHGRWFGG-RQ 514
Query 71 VCAAFFPEQKFKDGQY 86
+ A + ++ F G+Y
Sbjct 515 IIANTYDQELFHQGEY 530
> tgo:TGME49_112530 splicing factor protein, putative ; K13091
RNA-binding protein 39
Length=633
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query 11 DIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRF 65
D+R E +K+G +E+V I N D G V++ + AR A LNGR F
Sbjct 566 DVRDECKKFGSVEKVWIDERNVD-------GNVWIRFAHPDQARAAFGALNGRYF 613
> tgo:TGME49_114050 splicing factor U2AF 65 kDa subunit, putative
Length=414
Score = 32.0 bits (71), Expect = 0.49, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPN-EDLSYKPGVGKVFLVYGDVTSARRAQYMLNGR 63
++ + DI +E KYG LI RP E L VG V+L Y A +GR
Sbjct 202 YDEILSDILAECNKYGHALAALIIRPELEQLLPSVTVGDVYLEYASCIQADHIILTFSGR 261
Query 64 RFD 66
+D
Sbjct 262 MYD 264
> hsa:84991 RBM17, DKFZp686F13131, MGC14439, SPF45; RNA binding
motif protein 17; K12840 splicing factor 45
Length=401
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query 11 DIRSEAEKYGPLEEVLI---PRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQ 67
+ + E EKYG + + +I P +D + + +FL + V SA +A LNGR F
Sbjct 325 ETKEECEKYGKVGKCVIFEIPGAPDDEAVR-----IFLEFERVESAIKAVVDLNGRYFG- 378
Query 68 TRVVCAAFFPEQKFK 82
RVV A F+ KF+
Sbjct 379 GRVVKACFYNLDKFR 393
> mmu:76938 Rbm17, 2700027J02Rik; RNA binding motif protein 17;
K12840 splicing factor 45
Length=405
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 9/75 (12%)
Query 11 DIRSEAEKYGPLEEVLI---PRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQ 67
+ + E EKYG + + +I P +D + + +FL + V SA +A LNGR F
Sbjct 329 ETKEECEKYGKVGKCVIFEIPGAPDDEAVR-----IFLEFERVESAIKAVVDLNGRYFG- 382
Query 68 TRVVCAAFFPEQKFK 82
RVV A F+ KF+
Sbjct 383 GRVVKACFYNLDKFR 397
> tpv:TP03_0691 splicing factor; K13091 RNA-binding protein 39
Length=644
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query 10 KDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTR 69
+D++ E KYG + +V + + N D GKV++ + + A+ A L GR F
Sbjct 574 EDVKEECGKYGTVIQVFVNKRNPD-------GKVYVKFKNNDDAQAANKSLQGRYF-AGN 625
Query 70 VVCAAFFPEQKFKD 83
+ ++ + +++D
Sbjct 626 TIQVSYISDDQYQD 639
> cel:Y47G6A.20 rnp-6; RNP (RRM RNA binding domain) containing
family member (rnp-6); K12838 poly(U)-binding-splicing factor
PUF60
Length=749
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query 11 DIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTRV 70
+IR E KYG + +V+I G+ K+F+ Y D RA+ L+GR F V
Sbjct 678 EIREECGKYGNVIDVVIAN-----FASSGLVKIFVKYSDSMQVDRAKAALDGRFFGGNTV 732
Query 71 VCAAF 75
A+
Sbjct 733 KAEAY 737
> pfa:PFI0820c RNA binding protein, putative
Length=388
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query 4 SHEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRA-QYMLNG 62
S + V +RS EKYG LEE +I NE S G G FL + +S R A + M
Sbjct 232 SQKTNVSTLRSIFEKYGKLEECVIIHDNEGKS--KGYG--FLTF---SSPREAFKVMQQP 284
Query 63 RRFDQTRVVCAAFFPEQKFKDGQ 85
R RVV F Q K Q
Sbjct 285 ERIIDNRVVFLHFAVSQNLKKYQ 307
> dre:100330844 mCG19533-like; K13190 RNA-binding protein 15
Length=815
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRR 64
H ++R +KYG +EEV+I RP + G FL + ++ A RA+ + GR
Sbjct 278 HNITEVELRQGFDKYGIIEEVVIKRP----ARGQGGAYAFLKFQNLDMAHRAKVAMQGRM 333
Query 65 FD 66
+
Sbjct 334 IN 335
> dre:100136872 rbm15b, zgc:175165; RNA binding motif protein
15B
Length=402
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGR 63
H ++R +KYG +EEV+I RP + G FL + ++ A RA+ + GR
Sbjct 50 HNITEVELRQGFDKYGIIEEVVIKRP----ARGQGGAYAFLKFQNLDMAHRAKVAMQGR 104
> ath:AT2G16940 RNA recognition motif (RRM)-containing protein
Length=561
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 16/79 (20%)
Query 10 KDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTR 69
+D++ E K+G L + + K VG V+L + + +A AQ L+GR F
Sbjct 489 EDVKEECSKFGKLNHIFVD--------KNSVGFVYLRFENAQAAIGAQRALHGRWFAGKM 540
Query 70 VVCA--------AFFPEQK 80
+ A FPE K
Sbjct 541 ITATYMTTEAYEAKFPESK 559
> dre:387255 rbm19, npo; RNA binding motif protein 19; K14787
multiple RNA-binding domain-containing protein 1
Length=926
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query 10 KDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTR 69
+D++ K+GPL EVL P + L+ KP G F+ Y +A A L+G+ F Q R
Sbjct 412 EDLKEVFSKHGPLSEVLFPI--DSLTKKPK-GFAFVTYMIPENAVSALAQLDGQTF-QGR 467
Query 70 VV 71
V+
Sbjct 468 VL 469
> tpv:TP04_0540 hypothetical protein
Length=486
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 6/83 (7%)
Query 6 EAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRF 65
E +++ E KYG + V + S VF+V+ A A LN R F
Sbjct 410 ENLANEVKVECNKYGTVTSVYL-----HFSANNDTLSVFVVFNTPEDADNAVRALNTRWF 464
Query 66 DQTRVVCAAFFPEQKFKDGQYTL 88
+ +++C + F G Y L
Sbjct 465 NGRQIMCKTYDASAYFS-GNYDL 486
> cpv:cgd1_2730 Ro ribonucleoprotein-binding protein 1, RNA binding
protein with 3x RRM domains ; K12838 poly(U)-binding-splicing
factor PUF60
Length=693
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query 10 KDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTR 69
++++ E KYG + +V I N ++S ++F+V+ + A+ A LN R F +
Sbjct 617 EEVKIECSKYGKVYDVRIHVSN-NISKPSDRVRIFVVFESPSMAQIAVPALNNRWFGGNQ 675
Query 70 VVCAAFFPEQKF 81
V C+ + E+ +
Sbjct 676 VFCSLYNTERYY 687
> ath:AT5G09880 RNA recognition motif (RRM)-containing protein;
K13091 RNA-binding protein 39
Length=527
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query 11 DIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTRV 70
D+ E KYGP+ + + K G V+L + V +A AQ ++ R F Q ++
Sbjct 460 DVADECSKYGPVNHIYVD--------KNSAGFVYLRFQSVEAAAAAQRAMHMRWFAQ-KM 510
Query 71 VCAAFFPEQKFK 82
+ A F P +++
Sbjct 511 ISATFMPPHEYE 522
> cel:Y82E9BR.2 hypothetical protein
Length=530
Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query 43 VFLVYGDVTSARRAQYMLNGRRFDQTRVVCAAFFPEQKFKDGQY 86
VF+ + + +RAQ L GR+F R V +++ K+ + Q+
Sbjct 488 VFVEFASTSDCQRAQAALTGRKF-ANRTVVTSYYDVDKYHNRQF 530
> tgo:TGME49_036910 U2 snRNP auxiliary factor small subunit, putative
; K12836 splicing factor U2AF 35 kDa subunit
Length=254
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query 6 EAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRF 65
EA ++ E KYG +E++++ D +G V++ Y D +A +A L G RF
Sbjct 80 EAFFSEVFEELAKYGEVEDMVVCDNIGDHI----IGNVYVKYTDEEAANKALAALQG-RF 134
Query 66 DQTRVVCAAFFPEQKFKDGQ 85
+ + A F P F++ +
Sbjct 135 YSGKQIHAEFTPVTDFREAR 154
> xla:447356 MGC130690; MGC84102 protein; K12840 splicing factor
45
Length=400
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query 42 KVFLVYGDVTSARRAQYMLNGRRFDQTRVVCAAFFPEQKFK 82
++FL + V SA +A LNGR F R+V A+F+ KF+
Sbjct 355 RIFLEFERVESAIKAVVDLNGRYFG-GRIVKASFYNLDKFR 394
> tgo:TGME49_108920 U2 small nuclear ribonucleoprotein auxiliary
factor U2AF
Length=704
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query 2 TSSHEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPG-VGKVFLVYGDVTSARRAQYML 60
T+ E A + R E EK EE KP +G ++ + D + +A+ L
Sbjct 507 TAGEEDAGEKGRQEKEKAKSSEE-----------QKPATIGFAYVEFEDCEWSAKARKAL 555
Query 61 NGRRFDQTRVVCAAFFPEQKFK 82
NGR+F ++V A +F E KF+
Sbjct 556 NGRKFG-GKIVEAHYFSEVKFR 576
> xla:733282 rbm17; RNA binding motif protein 17
Length=400
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query 42 KVFLVYGDVTSARRAQYMLNGRRFDQTRVVCAAFFPEQKFK 82
++FL + V SA +A LNGR F R+V A F+ KF+
Sbjct 355 RIFLEFERVESAIKAVVDLNGRYFG-GRIVKAGFYNLDKFR 394
> pfa:MAL13P1.120 splicing factor, putative; K13091 RNA-binding
protein 39
Length=864
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRF 65
++D++ E KYG + + + N D GK+++ Y + + ++ LNGR F
Sbjct 793 LEDVKEECSKYGKVVNIWLDTKNID-------GKIYIKYSNNDESLKSFQFLNGRYF 842
> hsa:135295 SRSF12, FLJ14459, FLJ33484, FLJ41221, RP11-63L7.3,
SFRS13B, SFRS19, SRrp35; serine/arginine-rich splicing factor
12
Length=261
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query 11 DIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLN 61
D+R E +YGP+ +V IP D + G ++ + DV A A Y LN
Sbjct 25 DLRREFGRYGPIVDVYIP---LDFYTRRPRGFAYVQFEDVRDAEDALYNLN 72
> ath:AT3G13570 SCL30a; SCL30a; RNA binding / nucleic acid binding
/ nucleotide binding
Length=262
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNG 62
H+ +D+R E++GP++++ +PR D G F+ + D A A++ ++G
Sbjct 46 HDCRQEDLRRPFEQFGPVKDIYLPR---DYYTGDPRGFGFIQFMDPADAAEAKHQMDG 100
> xla:495068 srsf12, sfrs13b, srrp35; serine/arginine-rich splicing
factor 12
Length=251
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query 10 KDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLN 61
+D+R E +YGP+ +V +P D + G ++ + DV A A Y LN
Sbjct 24 EDLRREFGRYGPIVDVYVP---LDFYNRRPRGFAYIQFEDVRDAEDALYNLN 72
> bbo:BBOV_IV007810 23.m06352; U2 splicing factor subunit; K12836
splicing factor U2AF 35 kDa subunit
Length=251
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query 15 EAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTRVVCAA 74
E KYG +E++++ D +G V++ Y D SA A ML+GR + + C
Sbjct 89 ELMKYGEIEDMVVCDNIGDHI----IGNVYVKYRDENSAAHAISMLSGRFYGGKPIQC-E 143
Query 75 FFPEQKFKDGQ 85
+ P F++ +
Sbjct 144 YTPVTDFREAR 154
> ath:AT1G55310 SR33; SR33; RNA binding / protein binding
Length=220
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNG 62
H+ +D+R E++GP++++ +PR D G F+ + D A A++ ++G
Sbjct 45 HDCRQEDLRKSFEQFGPVKDIYLPR---DYYTGDPRGFGFVQFMDPADAADAKHHMDG 99
Lambda K H
0.317 0.134 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2017039696
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40