bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_2635_orf1 Length=89 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_034520 U2 snRNP auxiliary factor or splicing factor... 135 4e-32 bbo:BBOV_II004960 18.m06413; RNA recognition motif (RRM)-conta... 118 5e-27 tpv:TP04_0035 U2 small nuclear ribonucleoprotein, auxiliary fa... 116 2e-26 pfa:PF14_0656 U2 snRNP auxiliary factor, putative; K12837 spli... 105 5e-23 cpv:cgd2_1480 splicing factor U2AF U2 SnRNP auxiliary factor l... 83.2 2e-16 ath:AT1G60900 U2 snRNP auxiliary factor large subunit, putativ... 77.0 1e-14 ath:AT1G60830 U2 snRNP auxiliary factor large subunit, putative 73.9 1e-13 ath:AT4G36690 ATU2AF65A; RNA binding / nucleic acid binding / ... 70.9 9e-13 mmu:16589 Uhmk1, 4732477C12Rik, 4930500M09Rik, AA673513, AI449... 60.5 1e-09 cel:Y92C3B.2 uaf-1; U2AF splicing factor family member (uaf-1)... 59.7 2e-09 dre:767721 uhmk1, MGC153241, zgc:153241; U2AF homology motif (... 57.4 1e-08 hsa:127933 UHMK1, DKFZp434C1613, FLJ23015, KIS, KIST; U2AF hom... 56.2 2e-08 dre:402989 u2af2b, MGC77804, wu:fb73g02, zgc:77804; U2 small n... 50.4 1e-06 tpv:TP03_0201 hypothetical protein 50.1 2e-06 bbo:BBOV_IV007070 23.m05938; hypothetical protein 49.7 2e-06 xla:380287 u2af2, MGC53441, u2af65; U2 small nuclear RNA auxil... 49.3 3e-06 mmu:631331 Gm7061, EG631331; predicted gene 7061 48.5 mmu:22185 U2af2, 65kDa, MGC118033; U2 small nuclear ribonucleo... 47.8 1e-05 hsa:11338 U2AF2, U2AF65; U2 small nuclear RNA auxiliary factor... 47.4 1e-05 dre:557103 u2af2a, MGC110115, zgc:110115; U2 small nuclear RNA... 47.0 1e-05 cpv:cgd6_1680 splicing factor U2AF U2 snRNP auxiliary factor l... 35.0 0.059 pfa:PF07_0066 conserved Plasmodium protein, unknown function 34.7 0.082 hsa:29890 RBM15B, HUMAGCGB, OTT3; RNA binding motif protein 15... 33.5 0.17 mmu:109095 Rbm15b, 1810017N16Rik; RNA binding motif protein 15... 33.5 0.17 tgo:TGME49_002770 RNA-binding protein, putative ; K12838 poly(... 33.1 0.25 tgo:TGME49_112530 splicing factor protein, putative ; K13091 R... 32.7 0.26 tgo:TGME49_114050 splicing factor U2AF 65 kDa subunit, putative 32.0 0.49 hsa:84991 RBM17, DKFZp686F13131, MGC14439, SPF45; RNA binding ... 31.6 0.59 mmu:76938 Rbm17, 2700027J02Rik; RNA binding motif protein 17; ... 31.6 0.65 tpv:TP03_0691 splicing factor; K13091 RNA-binding protein 39 31.6 cel:Y47G6A.20 rnp-6; RNP (RRM RNA binding domain) containing f... 31.6 0.72 pfa:PFI0820c RNA binding protein, putative 31.2 0.84 dre:100330844 mCG19533-like; K13190 RNA-binding protein 15 30.8 dre:100136872 rbm15b, zgc:175165; RNA binding motif protein 15B 30.8 1.2 ath:AT2G16940 RNA recognition motif (RRM)-containing protein 30.0 1.8 dre:387255 rbm19, npo; RNA binding motif protein 19; K14787 mu... 30.0 1.9 tpv:TP04_0540 hypothetical protein 29.6 2.3 cpv:cgd1_2730 Ro ribonucleoprotein-binding protein 1, RNA bind... 29.6 2.5 ath:AT5G09880 RNA recognition motif (RRM)-containing protein; ... 29.6 2.5 cel:Y82E9BR.2 hypothetical protein 29.3 3.0 tgo:TGME49_036910 U2 snRNP auxiliary factor small subunit, put... 29.3 3.0 xla:447356 MGC130690; MGC84102 protein; K12840 splicing factor 45 29.3 tgo:TGME49_108920 U2 small nuclear ribonucleoprotein auxiliary... 28.9 3.9 xla:733282 rbm17; RNA binding motif protein 17 28.9 pfa:MAL13P1.120 splicing factor, putative; K13091 RNA-binding ... 28.9 4.3 hsa:135295 SRSF12, FLJ14459, FLJ33484, FLJ41221, RP11-63L7.3, ... 28.5 4.9 ath:AT3G13570 SCL30a; SCL30a; RNA binding / nucleic acid bindi... 28.5 5.5 xla:495068 srsf12, sfrs13b, srrp35; serine/arginine-rich splic... 28.1 6.2 bbo:BBOV_IV007810 23.m06352; U2 splicing factor subunit; K1283... 28.1 7.1 ath:AT1G55310 SR33; SR33; RNA binding / protein binding 28.1 7.7 > tgo:TGME49_034520 U2 snRNP auxiliary factor or splicing factor, putative ; K12837 splicing factor U2AF 65 kDa subunit Length=553 Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 62/85 (72%), Positives = 72/85 (84%), Gaps = 0/85 (0%) Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRR 64 +EA DI+ EAEK+G LEEVL+P+PNEDLSY+ GVGKVFL Y DVT+AR+AQ MLNGRR Sbjct 469 YEAICDDIKQEAEKHGALEEVLVPKPNEDLSYREGVGKVFLRYSDVTAARKAQLMLNGRR 528 Query 65 FDQTRVVCAAFFPEQKFKDGQYTLT 89 FD RVVCAAFFPE+KF G+YTLT Sbjct 529 FDSNRVVCAAFFPEEKFAAGRYTLT 553 > bbo:BBOV_II004960 18.m06413; RNA recognition motif (RRM)-containing protein; K12837 splicing factor U2AF 65 kDa subunit Length=383 Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 58/86 (67%), Positives = 68/86 (79%), Gaps = 3/86 (3%) Query 5 HEAAVKD-IRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGR 63 HE VKD I EA+KYG LE+++IPRPN+DLSYK GVGKVFL +GD S+RRAQYMLNGR Sbjct 300 HE--VKDAIMEEAKKYGHLEDIVIPRPNDDLSYKEGVGKVFLKFGDEISSRRAQYMLNGR 357 Query 64 RFDQTRVVCAAFFPEQKFKDGQYTLT 89 FD R+VCAAFFP +F G+YTL Sbjct 358 VFDGNRIVCAAFFPLDRFLKGKYTLV 383 > tpv:TP04_0035 U2 small nuclear ribonucleoprotein, auxiliary factor, large subunit; K12837 splicing factor U2AF 65 kDa subunit Length=380 Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 51/88 (57%), Positives = 70/88 (79%), Gaps = 0/88 (0%) Query 1 STSSHEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYML 60 S ++ V+ ++ EA+KYGPL+EV+IPRP++DL++K GVGKVF+ Y D+ SAR+AQYM Sbjct 292 SDYNYNEIVRLVKEEAQKYGPLQEVVIPRPDKDLTFKEGVGKVFIRYEDLLSARKAQYMF 351 Query 61 NGRRFDQTRVVCAAFFPEQKFKDGQYTL 88 NGR FD+ R+VC+AFFPE F G+YTL Sbjct 352 NGRVFDKNRIVCSAFFPEDLFITGKYTL 379 > pfa:PF14_0656 U2 snRNP auxiliary factor, putative; K12837 splicing factor U2AF 65 kDa subunit Length=833 Score = 105 bits (261), Expect = 5e-23, Method: Composition-based stats. Identities = 48/87 (55%), Positives = 67/87 (77%), Gaps = 1/87 (1%) Query 3 SSHEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNG 62 S +E +K+++ EAEKYG L+ ++IP+PN+DLSY GVGK+FL Y D +AR+AQYM NG Sbjct 748 SQYEEILKEVKEEAEKYGTLQNIVIPKPNKDLSYTEGVGKIFLHYADEATARKAQYMFNG 807 Query 63 RRFDQTRVVCAAFFPEQKFKDGQYTLT 89 R F++ RVVCAAF+ E+ F G+Y L+ Sbjct 808 RLFEK-RVVCAAFYSEEHFLKGKYVLS 833 > cpv:cgd2_1480 splicing factor U2AF U2 SnRNP auxiliary factor large subunit, RRM domain ; K12837 splicing factor U2AF 65 kDa subunit Length=438 Score = 83.2 bits (204), Expect = 2e-16, Method: Composition-based stats. Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 2/86 (2%) Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPN--EDLSYKPGVGKVFLVYGDVTSARRAQYMLNG 62 + + + +RSEAE YG + E+ PRP E+ G GKVF+ + D+T+ARRAQY NG Sbjct 342 YNSTLDSVRSEAEVYGTILEIFCPRPKVIEEFHSCSGAGKVFIYFSDITAARRAQYQFNG 401 Query 63 RRFDQTRVVCAAFFPEQKFKDGQYTL 88 R FD + V A FFP +K+ +Y++ Sbjct 402 RVFDNIKTVSATFFPLEKYLKHEYSV 427 > ath:AT1G60900 U2 snRNP auxiliary factor large subunit, putative; K12837 splicing factor U2AF 65 kDa subunit Length=589 Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 37/78 (47%), Positives = 51/78 (65%), Gaps = 1/78 (1%) Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQT 68 ++D+R E K+G L V+IPRPN D PGVGKVFL Y DV + +A+ +NGR+F Sbjct 511 MEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGN 570 Query 69 RVVCAAFFPEQKFKDGQY 86 +VV A ++PE K+ G Y Sbjct 571 QVV-AVYYPEDKYAQGDY 587 > ath:AT1G60830 U2 snRNP auxiliary factor large subunit, putative Length=111 Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 1/78 (1%) Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQT 68 ++D+ E K+G L V+IPRPN D PGVGKVFL Y DV + +A+ +NGR+F Sbjct 33 MEDMSQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKARSGMNGRKFGGN 92 Query 69 RVVCAAFFPEQKFKDGQY 86 +VV A ++PE K+ G Y Sbjct 93 QVV-AVYYPEDKYAQGDY 109 > ath:AT4G36690 ATU2AF65A; RNA binding / nucleic acid binding / nucleotide binding Length=573 Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 34/78 (43%), Positives = 50/78 (64%), Gaps = 1/78 (1%) Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQT 68 ++D+R E K+G L V+IPRP+ + G+GKVFL Y D + RA++ +NGR+F Sbjct 495 MEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRARFGMNGRKFGGN 554 Query 69 RVVCAAFFPEQKFKDGQY 86 VV A ++PE KF+ G Y Sbjct 555 EVV-AVYYPEDKFEQGDY 571 > mmu:16589 Uhmk1, 4732477C12Rik, 4930500M09Rik, AA673513, AI449218, AU021979, KIS, Kist; U2AF homology motif (UHM) kinase 1 (EC:2.7.11.1); K08877 U2AF homology motif (UHM) kinase 1 [EC:2.7.11.1] Length=419 Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 7/80 (8%) Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRR 64 +E V+D++ E +KYGP+ +L+P+ N PG G+VF+ Y + ++ AQ +L GR Sbjct 340 YEDVVEDVKEECQKYGPVVSLLVPKEN------PGRGQVFVEYANAGDSKAAQKLLTGRM 393 Query 65 FDQTRVVCAAFFPEQKFKDG 84 FD VV A F+P +K G Sbjct 394 FDGKFVV-ATFYPLSAYKRG 412 > cel:Y92C3B.2 uaf-1; U2AF splicing factor family member (uaf-1); K12837 splicing factor U2AF 65 kDa subunit Length=474 Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 31/82 (37%), Positives = 48/82 (58%), Gaps = 2/82 (2%) Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRR 64 +E ++D+R E KYG + + IPRP ED PGVGKVF+ + + +RAQ L GR+ Sbjct 395 YEEILEDVRDECSKYGIVRSLEIPRPYEDHPV-PGVGKVFVEFASTSDCQRAQAALTGRK 453 Query 65 FDQTRVVCAAFFPEQKFKDGQY 86 F R V +++ K+ + Q+ Sbjct 454 F-ANRTVVTSYYDVDKYHNRQF 474 > dre:767721 uhmk1, MGC153241, zgc:153241; U2AF homology motif (UHM) kinase 1 (EC:2.7.11.1); K08877 U2AF homology motif (UHM) kinase 1 [EC:2.7.11.1] Length=410 Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 29/80 (36%), Positives = 47/80 (58%), Gaps = 7/80 (8%) Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRR 64 +E ++D++ E +KYG + +LIP+ N PG G+VF+ Y + ++ AQ +L GR Sbjct 331 YEDIIEDMKEECQKYGTVVSLLIPKEN------PGKGQVFVEYANAGDSKEAQRLLTGRT 384 Query 65 FDQTRVVCAAFFPEQKFKDG 84 FD + V A F+P +K G Sbjct 385 FD-GKFVVATFYPLGAYKRG 403 > hsa:127933 UHMK1, DKFZp434C1613, FLJ23015, KIS, KIST; U2AF homology motif (UHM) kinase 1 (EC:2.7.11.1); K08877 U2AF homology motif (UHM) kinase 1 [EC:2.7.11.1] Length=345 Score = 56.2 bits (134), Expect = 2e-08, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 42/72 (58%), Gaps = 7/72 (9%) Query 13 RSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTRVVC 72 + E +KYGP+ +L+P+ N PG G+VF+ Y + ++ AQ +L GR FD + V Sbjct 274 KEECQKYGPVVSLLVPKEN------PGRGQVFVEYANAGDSKAAQKLLTGRMFD-GKFVV 326 Query 73 AAFFPEQKFKDG 84 A F+P +K G Sbjct 327 ATFYPLSAYKRG 338 > dre:402989 u2af2b, MGC77804, wu:fb73g02, zgc:77804; U2 small nuclear RNA auxiliary factor 2b; K12837 splicing factor U2AF 65 kDa subunit Length=475 Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRR 64 +E V+D++ E KYG ++ + IPRP + L PG GK+F+ + V +++A L GR+ Sbjct 395 YEEIVEDVKEECSKYGQVKSIEIPRPVDGLDI-PGTGKIFVEFTSVYDSQKAMQGLTGRK 453 Query 65 FDQTRVVCAAF 75 F RVV + Sbjct 454 F-ANRVVVTKY 463 > tpv:TP03_0201 hypothetical protein Length=509 Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/85 (36%), Positives = 48/85 (56%), Gaps = 8/85 (9%) Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLS------YKP-GVGKVFLVYGDVTSARRAQYMLN 61 + D+R E E YG + V +PR + L+ + P VG F+++ V SA +A+ +L+ Sbjct 383 IDDVRCECELYGVVLRVELPRVPKGLTEEEMKAFDPTSVGSAFVLFSTVESASKARKVLD 442 Query 62 GRRFDQTRVVCAAFFPEQKFKDGQY 86 GR+F Q R V A FF E F G++ Sbjct 443 GRKFGQ-RTVHAHFFSELYFLTGKF 466 > bbo:BBOV_IV007070 23.m05938; hypothetical protein Length=400 Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 8/86 (9%) Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLSYK-------PGVGKVFLVYGDVTSARRAQYMLN 61 + D+R E E+YGP+ V +PR + L+ VG F+++ ++ A +A+ +L+ Sbjct 279 IDDVRCECEEYGPVVRVEMPRVPKGLTLDEIRNMDFSAVGCAFVLFSNIEGASKARKVLD 338 Query 62 GRRFDQTRVVCAAFFPEQKFKDGQYT 87 GR+F R+V FF E F G+++ Sbjct 339 GRKFGH-RIVECHFFSELLFHVGEFS 363 > xla:380287 u2af2, MGC53441, u2af65; U2 small nuclear RNA auxiliary factor 2; K12837 splicing factor U2AF 65 kDa subunit Length=456 Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%) Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRR 64 +E V+D+R E KYG ++ + IPRP + + PG GK+F+ + V ++A L GR+ Sbjct 376 YEEIVEDVRDECGKYGAVKSIEIPRPVDGVEV-PGCGKIFVEFTSVFDCQKAMQGLTGRK 434 Query 65 FDQTRVVCAAF 75 F RVV + Sbjct 435 F-ANRVVVTKY 444 > mmu:631331 Gm7061, EG631331; predicted gene 7061 Length=730 Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 1/63 (1%) Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQT 68 V D+R E KYG ++ + IPRP + + PG GK+F+ + V ++A L GR+F Sbjct 654 VDDVRDECNKYGLVKSIEIPRPMDGVEV-PGCGKIFVEFTSVIDCQKAMQGLTGRKFANR 712 Query 69 RVV 71 VV Sbjct 713 VVV 715 > mmu:22185 U2af2, 65kDa, MGC118033; U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2; K12837 splicing factor U2AF 65 kDa subunit Length=475 Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%) Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQT 68 V+D+R E KYG ++ + IPRP + + PG GK+F+ + V ++A L GR+F Sbjct 399 VEDVRDECSKYGLVKSIEIPRPVDGVEV-PGCGKIFVEFTSVFDCQKAMQGLTGRKF-AN 456 Query 69 RVVCAAF 75 RVV + Sbjct 457 RVVVTKY 463 > hsa:11338 U2AF2, U2AF65; U2 small nuclear RNA auxiliary factor 2; K12837 splicing factor U2AF 65 kDa subunit Length=471 Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%) Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQT 68 V+D+R E KYG ++ + IPRP + + PG GK+F+ + V ++A L GR+F Sbjct 395 VEDVRDECSKYGLVKSIEIPRPVDGVEV-PGCGKIFVEFTSVFDCQKAMQGLTGRKF-AN 452 Query 69 RVVCAAF 75 RVV + Sbjct 453 RVVVTKY 459 > dre:557103 u2af2a, MGC110115, zgc:110115; U2 small nuclear RNA auxiliary factor 2a; K12837 splicing factor U2AF 65 kDa subunit Length=465 Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 25/67 (37%), Positives = 39/67 (58%), Gaps = 2/67 (2%) Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQT 68 V+D+R E KYG ++ + IPRP + L PG GK+F+ + V +++A L GR+ Sbjct 389 VEDVRDECSKYGQVKSIEIPRPVDGLDI-PGTGKIFVEFMSVFDSQKAMQGLTGRK-SAN 446 Query 69 RVVCAAF 75 RVV + Sbjct 447 RVVVTKY 453 > cpv:cgd6_1680 splicing factor U2AF U2 snRNP auxiliary factor large subunit; 3 RRM domains Length=492 Score = 35.0 bits (79), Expect = 0.059, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 6/87 (6%) Query 3 SSHEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYK-----PGVGKVFLVYGDVTSARRAQ 57 S++ + ++I + KYG + + IP P LS K P G+ F+ + +V SA +A+ Sbjct 378 STYSSIHEEIHEKCLKYGEIYKTTIPIPERALSNKDQFNDPYFGRAFIFFYNVESAIKAK 437 Query 58 YMLNGRRFDQTRVVCAAFFPEQKFKDG 84 L RF R + +++ E +F G Sbjct 438 LDLFKMRF-LGRNMKISYYCEHEFLHG 463 > pfa:PF07_0066 conserved Plasmodium protein, unknown function Length=1125 Score = 34.7 bits (78), Expect = 0.082, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 35/59 (59%), Gaps = 4/59 (6%) Query 23 EEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTRVVCAAFFPEQKF 81 EE + PN DL+ +G F+ + ++ SA +A+ L+GR+F ++ A +F E+KF Sbjct 1033 EEEDLTHPNYDLT---SIGCAFIHFENIESATKARKELSGRKFG-ANIIEANYFSEKKF 1087 > hsa:29890 RBM15B, HUMAGCGB, OTT3; RNA binding motif protein 15B; K13190 RNA-binding protein 15 Length=890 Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%) Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGR 63 H + ++R EKYG +EEV+I RP + G FL + ++ A RA+ ++GR Sbjct 346 HSVSEVELRRAFEKYGIIEEVVIKRP----ARGQGGAYAFLKFQNLDMAHRAKVAMSGR 400 > mmu:109095 Rbm15b, 1810017N16Rik; RNA binding motif protein 15B; K13190 RNA-binding protein 15 Length=887 Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust. Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%) Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGR 63 H + ++R EKYG +EEV+I RP + G FL + ++ A RA+ ++GR Sbjct 342 HSVSEVELRRAFEKYGIIEEVVIKRP----ARGQGGAYAFLKFQNLDMAHRAKVAMSGR 396 > tgo:TGME49_002770 RNA-binding protein, putative ; K12838 poly(U)-binding-splicing factor PUF60 Length=532 Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 39/76 (51%), Gaps = 8/76 (10%) Query 11 DIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTRV 70 ++R E K+G ++ V + E + ++F+ + D++ AR A L+GR F R Sbjct 463 EVREECSKFGSIKRVEVHTLKETV-------RIFVEFSDLSGAREAIPSLHGRWFGG-RQ 514 Query 71 VCAAFFPEQKFKDGQY 86 + A + ++ F G+Y Sbjct 515 IIANTYDQELFHQGEY 530 > tgo:TGME49_112530 splicing factor protein, putative ; K13091 RNA-binding protein 39 Length=633 Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust. Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 7/55 (12%) Query 11 DIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRF 65 D+R E +K+G +E+V I N D G V++ + AR A LNGR F Sbjct 566 DVRDECKKFGSVEKVWIDERNVD-------GNVWIRFAHPDQARAAFGALNGRYF 613 > tgo:TGME49_114050 splicing factor U2AF 65 kDa subunit, putative Length=414 Score = 32.0 bits (71), Expect = 0.49, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPN-EDLSYKPGVGKVFLVYGDVTSARRAQYMLNGR 63 ++ + DI +E KYG LI RP E L VG V+L Y A +GR Sbjct 202 YDEILSDILAECNKYGHALAALIIRPELEQLLPSVTVGDVYLEYASCIQADHIILTFSGR 261 Query 64 RFD 66 +D Sbjct 262 MYD 264 > hsa:84991 RBM17, DKFZp686F13131, MGC14439, SPF45; RNA binding motif protein 17; K12840 splicing factor 45 Length=401 Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 9/75 (12%) Query 11 DIRSEAEKYGPLEEVLI---PRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQ 67 + + E EKYG + + +I P +D + + +FL + V SA +A LNGR F Sbjct 325 ETKEECEKYGKVGKCVIFEIPGAPDDEAVR-----IFLEFERVESAIKAVVDLNGRYFG- 378 Query 68 TRVVCAAFFPEQKFK 82 RVV A F+ KF+ Sbjct 379 GRVVKACFYNLDKFR 393 > mmu:76938 Rbm17, 2700027J02Rik; RNA binding motif protein 17; K12840 splicing factor 45 Length=405 Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust. Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 9/75 (12%) Query 11 DIRSEAEKYGPLEEVLI---PRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQ 67 + + E EKYG + + +I P +D + + +FL + V SA +A LNGR F Sbjct 329 ETKEECEKYGKVGKCVIFEIPGAPDDEAVR-----IFLEFERVESAIKAVVDLNGRYFG- 382 Query 68 TRVVCAAFFPEQKFK 82 RVV A F+ KF+ Sbjct 383 GRVVKACFYNLDKFR 397 > tpv:TP03_0691 splicing factor; K13091 RNA-binding protein 39 Length=644 Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust. Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 8/74 (10%) Query 10 KDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTR 69 +D++ E KYG + +V + + N D GKV++ + + A+ A L GR F Sbjct 574 EDVKEECGKYGTVIQVFVNKRNPD-------GKVYVKFKNNDDAQAANKSLQGRYF-AGN 625 Query 70 VVCAAFFPEQKFKD 83 + ++ + +++D Sbjct 626 TIQVSYISDDQYQD 639 > cel:Y47G6A.20 rnp-6; RNP (RRM RNA binding domain) containing family member (rnp-6); K12838 poly(U)-binding-splicing factor PUF60 Length=749 Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust. Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%) Query 11 DIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTRV 70 +IR E KYG + +V+I G+ K+F+ Y D RA+ L+GR F V Sbjct 678 EIREECGKYGNVIDVVIAN-----FASSGLVKIFVKYSDSMQVDRAKAALDGRFFGGNTV 732 Query 71 VCAAF 75 A+ Sbjct 733 KAEAY 737 > pfa:PFI0820c RNA binding protein, putative Length=388 Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 37/83 (44%), Gaps = 8/83 (9%) Query 4 SHEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRA-QYMLNG 62 S + V +RS EKYG LEE +I NE S G G FL + +S R A + M Sbjct 232 SQKTNVSTLRSIFEKYGKLEECVIIHDNEGKS--KGYG--FLTF---SSPREAFKVMQQP 284 Query 63 RRFDQTRVVCAAFFPEQKFKDGQ 85 R RVV F Q K Q Sbjct 285 ERIIDNRVVFLHFAVSQNLKKYQ 307 > dre:100330844 mCG19533-like; K13190 RNA-binding protein 15 Length=815 Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 4/62 (6%) Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRR 64 H ++R +KYG +EEV+I RP + G FL + ++ A RA+ + GR Sbjct 278 HNITEVELRQGFDKYGIIEEVVIKRP----ARGQGGAYAFLKFQNLDMAHRAKVAMQGRM 333 Query 65 FD 66 + Sbjct 334 IN 335 > dre:100136872 rbm15b, zgc:175165; RNA binding motif protein 15B Length=402 Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust. Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGR 63 H ++R +KYG +EEV+I RP + G FL + ++ A RA+ + GR Sbjct 50 HNITEVELRQGFDKYGIIEEVVIKRP----ARGQGGAYAFLKFQNLDMAHRAKVAMQGR 104 > ath:AT2G16940 RNA recognition motif (RRM)-containing protein Length=561 Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust. Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 16/79 (20%) Query 10 KDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTR 69 +D++ E K+G L + + K VG V+L + + +A AQ L+GR F Sbjct 489 EDVKEECSKFGKLNHIFVD--------KNSVGFVYLRFENAQAAIGAQRALHGRWFAGKM 540 Query 70 VVCA--------AFFPEQK 80 + A FPE K Sbjct 541 ITATYMTTEAYEAKFPESK 559 > dre:387255 rbm19, npo; RNA binding motif protein 19; K14787 multiple RNA-binding domain-containing protein 1 Length=926 Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 4/62 (6%) Query 10 KDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTR 69 +D++ K+GPL EVL P + L+ KP G F+ Y +A A L+G+ F Q R Sbjct 412 EDLKEVFSKHGPLSEVLFPI--DSLTKKPK-GFAFVTYMIPENAVSALAQLDGQTF-QGR 467 Query 70 VV 71 V+ Sbjct 468 VL 469 > tpv:TP04_0540 hypothetical protein Length=486 Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust. Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 6/83 (7%) Query 6 EAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRF 65 E +++ E KYG + V + S VF+V+ A A LN R F Sbjct 410 ENLANEVKVECNKYGTVTSVYL-----HFSANNDTLSVFVVFNTPEDADNAVRALNTRWF 464 Query 66 DQTRVVCAAFFPEQKFKDGQYTL 88 + +++C + F G Y L Sbjct 465 NGRQIMCKTYDASAYFS-GNYDL 486 > cpv:cgd1_2730 Ro ribonucleoprotein-binding protein 1, RNA binding protein with 3x RRM domains ; K12838 poly(U)-binding-splicing factor PUF60 Length=693 Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%) Query 10 KDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTR 69 ++++ E KYG + +V I N ++S ++F+V+ + A+ A LN R F + Sbjct 617 EEVKIECSKYGKVYDVRIHVSN-NISKPSDRVRIFVVFESPSMAQIAVPALNNRWFGGNQ 675 Query 70 VVCAAFFPEQKF 81 V C+ + E+ + Sbjct 676 VFCSLYNTERYY 687 > ath:AT5G09880 RNA recognition motif (RRM)-containing protein; K13091 RNA-binding protein 39 Length=527 Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust. Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 9/72 (12%) Query 11 DIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTRV 70 D+ E KYGP+ + + K G V+L + V +A AQ ++ R F Q ++ Sbjct 460 DVADECSKYGPVNHIYVD--------KNSAGFVYLRFQSVEAAAAAQRAMHMRWFAQ-KM 510 Query 71 VCAAFFPEQKFK 82 + A F P +++ Sbjct 511 ISATFMPPHEYE 522 > cel:Y82E9BR.2 hypothetical protein Length=530 Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Query 43 VFLVYGDVTSARRAQYMLNGRRFDQTRVVCAAFFPEQKFKDGQY 86 VF+ + + +RAQ L GR+F R V +++ K+ + Q+ Sbjct 488 VFVEFASTSDCQRAQAALTGRKF-ANRTVVTSYYDVDKYHNRQF 530 > tgo:TGME49_036910 U2 snRNP auxiliary factor small subunit, putative ; K12836 splicing factor U2AF 35 kDa subunit Length=254 Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust. Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 5/80 (6%) Query 6 EAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRF 65 EA ++ E KYG +E++++ D +G V++ Y D +A +A L G RF Sbjct 80 EAFFSEVFEELAKYGEVEDMVVCDNIGDHI----IGNVYVKYTDEEAANKALAALQG-RF 134 Query 66 DQTRVVCAAFFPEQKFKDGQ 85 + + A F P F++ + Sbjct 135 YSGKQIHAEFTPVTDFREAR 154 > xla:447356 MGC130690; MGC84102 protein; K12840 splicing factor 45 Length=400 Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%) Query 42 KVFLVYGDVTSARRAQYMLNGRRFDQTRVVCAAFFPEQKFK 82 ++FL + V SA +A LNGR F R+V A+F+ KF+ Sbjct 355 RIFLEFERVESAIKAVVDLNGRYFG-GRIVKASFYNLDKFR 394 > tgo:TGME49_108920 U2 small nuclear ribonucleoprotein auxiliary factor U2AF Length=704 Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 13/82 (15%) Query 2 TSSHEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPG-VGKVFLVYGDVTSARRAQYML 60 T+ E A + R E EK EE KP +G ++ + D + +A+ L Sbjct 507 TAGEEDAGEKGRQEKEKAKSSEE-----------QKPATIGFAYVEFEDCEWSAKARKAL 555 Query 61 NGRRFDQTRVVCAAFFPEQKFK 82 NGR+F ++V A +F E KF+ Sbjct 556 NGRKFG-GKIVEAHYFSEVKFR 576 > xla:733282 rbm17; RNA binding motif protein 17 Length=400 Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%) Query 42 KVFLVYGDVTSARRAQYMLNGRRFDQTRVVCAAFFPEQKFK 82 ++FL + V SA +A LNGR F R+V A F+ KF+ Sbjct 355 RIFLEFERVESAIKAVVDLNGRYFG-GRIVKAGFYNLDKFR 394 > pfa:MAL13P1.120 splicing factor, putative; K13091 RNA-binding protein 39 Length=864 Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 7/57 (12%) Query 9 VKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRF 65 ++D++ E KYG + + + N D GK+++ Y + + ++ LNGR F Sbjct 793 LEDVKEECSKYGKVVNIWLDTKNID-------GKIYIKYSNNDESLKSFQFLNGRYF 842 > hsa:135295 SRSF12, FLJ14459, FLJ33484, FLJ41221, RP11-63L7.3, SFRS13B, SFRS19, SRrp35; serine/arginine-rich splicing factor 12 Length=261 Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust. Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%) Query 11 DIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLN 61 D+R E +YGP+ +V IP D + G ++ + DV A A Y LN Sbjct 25 DLRREFGRYGPIVDVYIP---LDFYTRRPRGFAYVQFEDVRDAEDALYNLN 72 > ath:AT3G13570 SCL30a; SCL30a; RNA binding / nucleic acid binding / nucleotide binding Length=262 Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%) Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNG 62 H+ +D+R E++GP++++ +PR D G F+ + D A A++ ++G Sbjct 46 HDCRQEDLRRPFEQFGPVKDIYLPR---DYYTGDPRGFGFIQFMDPADAAEAKHQMDG 100 > xla:495068 srsf12, sfrs13b, srrp35; serine/arginine-rich splicing factor 12 Length=251 Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Query 10 KDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLN 61 +D+R E +YGP+ +V +P D + G ++ + DV A A Y LN Sbjct 24 EDLRREFGRYGPIVDVYVP---LDFYNRRPRGFAYIQFEDVRDAEDALYNLN 72 > bbo:BBOV_IV007810 23.m06352; U2 splicing factor subunit; K12836 splicing factor U2AF 35 kDa subunit Length=251 Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 5/71 (7%) Query 15 EAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNGRRFDQTRVVCAA 74 E KYG +E++++ D +G V++ Y D SA A ML+GR + + C Sbjct 89 ELMKYGEIEDMVVCDNIGDHI----IGNVYVKYRDENSAAHAISMLSGRFYGGKPIQC-E 143 Query 75 FFPEQKFKDGQ 85 + P F++ + Sbjct 144 YTPVTDFREAR 154 > ath:AT1G55310 SR33; SR33; RNA binding / protein binding Length=220 Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust. Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 3/58 (5%) Query 5 HEAAVKDIRSEAEKYGPLEEVLIPRPNEDLSYKPGVGKVFLVYGDVTSARRAQYMLNG 62 H+ +D+R E++GP++++ +PR D G F+ + D A A++ ++G Sbjct 45 HDCRQEDLRKSFEQFGPVKDIYLPR---DYYTGDPRGFGFVQFMDPADAADAKHHMDG 99 Lambda K H 0.317 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2017039696 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40