bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_2721_orf2
Length=147
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_029670 ribosomal protein S23, putative ; K02973 sma... 271 6e-73
cpv:cgd6_1390 ribosomal protein S23 260 9e-70
bbo:BBOV_III000970 17.m07113; 40S ribosomal protein S12P; K029... 256 1e-68
tpv:TP03_0745 40S ribosomal protein S23; K02973 small subunit ... 256 2e-68
pfa:PFC0290w 40S ribosomal protein S23, putative; K02973 small... 252 2e-67
dre:100000341 rps23; zgc:171710; K02973 small subunit ribosoma... 249 2e-66
xla:446737 rps23, MGC86316; ribosomal protein S23; K02973 smal... 247 1e-65
mmu:100038875 Gm15450, OTTMUSG00000022083; predicted gene 1545... 247 1e-65
mmu:66475 Rps23, 2410044J15Rik; ribosomal protein S23; K02973 ... 247 1e-65
hsa:6228 RPS23, FLJ35016; ribosomal protein S23; K02973 small ... 247 1e-65
mmu:100503854 40S ribosomal protein S23-like 244 9e-65
cel:F28D1.7 rps-23; Ribosomal Protein, Small subunit family me... 242 3e-64
ath:AT5G02960 40S ribosomal protein S23 (RPS23B); K02973 small... 234 6e-62
mmu:667414 Gm8618, EG667414; predicted gene 8618 234 7e-62
sce:YPR132W RPS23B; Rps23bp; K02973 small subunit ribosomal pr... 233 1e-61
sce:YGR118W RPS23A; Rps23ap; K02973 small subunit ribosomal pr... 233 1e-61
ath:AT3G09680 40S ribosomal protein S23 (RPS23A); K02973 small... 225 3e-59
mmu:668809 Gm9372, EG668809; predicted gene 9372 197 1e-50
dre:100332638 ribosomal protein S23-like 90.5 2e-18
xla:380337 mrps12, MGC64304; mitochondrial ribosomal protein S12 58.2 1e-08
mmu:24030 Mrps12, AI327385, Rpms12, rps12; mitochondrial ribos... 53.1 3e-07
hsa:6183 MRPS12, MPR-S12, MT-RPS12, RPMS12, RPS12, RPSM12; mit... 51.6 8e-07
ath:ArthCp047 rps12; ribosomal protein S12; K02992 small subun... 49.7 3e-06
ath:ArthCp001 rps12; ribosomal protein S12 49.7 3e-06
sce:YNR036C MRPS12; Mitochondrial protein; may interact with r... 45.8 4e-05
tgo:TGME49_102055 ribosomal protein S23, putative 45.8 5e-05
cel:T03D8.2 hypothetical protein 43.9 2e-04
bbo:BBOV_V000340 ribosomal protein S12 43.1 3e-04
eco:b3342 rpsL, asuB, ECK3329, JW3304, strA; 30S ribosomal sub... 42.7 4e-04
tpv:TP05_0017 rps12; ribosomal protein S12 39.3 0.004
tgo:TGME49_019770 ribosomal protein S12, putative 38.5 0.008
bbo:BBOV_IV007080 23.m06072; ribosomal protein S12 37.7 0.013
tpv:TP01_0505 40S ribosomal protein S12 37.0 0.024
pfa:PFD0600c mitochondrial ribosomal protein S12 precursor, pu... 35.4 0.061
cel:T23D8.9 sys-1; SYmmetrical Sister cell hermaphrodite gonad... 30.8 1.6
ath:ArthMp085 rps12; ribosomal protein S12 30.4 2.0
ath:AT2G07675 ribosomal protein S12 mitochondrial family protein 30.4 2.0
tpv:TP01_0543 transcription factor 28.9 6.1
> tgo:TGME49_029670 ribosomal protein S23, putative ; K02973 small
subunit ribosomal protein S23e
Length=143
Score = 271 bits (693), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 132/141 (93%), Positives = 137/141 (97%), Gaps = 0/141 (0%)
Query 7 KPRGMRTARKLRNRRRVQKWADKQYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIEAKQP 66
KP G+RTARKLR+RRRVQKWADK YKKAHLGTRWKANPFGGSSHAKGIVVEKLGIEAKQP
Sbjct 3 KPNGIRTARKLRSRRRVQKWADKTYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIEAKQP 62
Query 67 NSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGVRFKI 126
NSAIRKCVRVQLIKNGKKITAFVPRDG LNYIDENDEVLVAGFGRSGHAVGDIPGVRFK+
Sbjct 63 NSAIRKCVRVQLIKNGKKITAFVPRDGSLNYIDENDEVLVAGFGRSGHAVGDIPGVRFKV 122
Query 127 VKVSGVSLLALFKEKKEKPRS 147
VKV+G SLLALFKEKKEKPR+
Sbjct 123 VKVAGASLLALFKEKKEKPRT 143
> cpv:cgd6_1390 ribosomal protein S23
Length=161
Score = 260 bits (665), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 124/141 (87%), Positives = 135/141 (95%), Gaps = 0/141 (0%)
Query 7 KPRGMRTARKLRNRRRVQKWADKQYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIEAKQP 66
KP+G+ TAR+LR RRR QKWADKQYK+A+LGTR+K+NPFGG+SHAKGIVVE+ GIEAKQP
Sbjct 21 KPKGINTARELRTRRRTQKWADKQYKRANLGTRYKSNPFGGASHAKGIVVERFGIEAKQP 80
Query 67 NSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGVRFKI 126
NSA+RKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGR GH+VGDIPGVRFK
Sbjct 81 NSAVRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRKGHSVGDIPGVRFKA 140
Query 127 VKVSGVSLLALFKEKKEKPRS 147
VKVSGVSLLALFKEKKEKPRS
Sbjct 141 VKVSGVSLLALFKEKKEKPRS 161
> bbo:BBOV_III000970 17.m07113; 40S ribosomal protein S12P; K02973
small subunit ribosomal protein S23e
Length=145
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 124/145 (85%), Positives = 134/145 (92%), Gaps = 0/145 (0%)
Query 3 MGACKPRGMRTARKLRNRRRVQKWADKQYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIE 62
MG+ PRGM ARKL++RRR Q+WADK YKKAHLGTRWK NPF GSSHAKGIVVEK+ IE
Sbjct 1 MGSGVPRGMLAARKLKSRRRSQRWADKAYKKAHLGTRWKCNPFKGSSHAKGIVVEKIAIE 60
Query 63 AKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGV 122
AKQPNSA RK VRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGH+VGD+PGV
Sbjct 61 AKQPNSAYRKSVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHSVGDLPGV 120
Query 123 RFKIVKVSGVSLLALFKEKKEKPRS 147
RFK+VKV+GVSLLAL+KEKKEKPRS
Sbjct 121 RFKVVKVAGVSLLALYKEKKEKPRS 145
> tpv:TP03_0745 40S ribosomal protein S23; K02973 small subunit
ribosomal protein S23e
Length=145
Score = 256 bits (654), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/145 (85%), Positives = 135/145 (93%), Gaps = 0/145 (0%)
Query 3 MGACKPRGMRTARKLRNRRRVQKWADKQYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIE 62
MG+ PRG+R ARKLRNRRR Q+WADK YKKA+LGTRWK NPF GSSHAKGIVVEK+ IE
Sbjct 1 MGSGAPRGIRAARKLRNRRRKQRWADKAYKKANLGTRWKCNPFKGSSHAKGIVVEKIAIE 60
Query 63 AKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGV 122
AKQPNSA RK VRVQLIKNGKKITAFVPRDGCLN+IDENDEVLV+GFGRSGH+VGD+PGV
Sbjct 61 AKQPNSAYRKSVRVQLIKNGKKITAFVPRDGCLNFIDENDEVLVSGFGRSGHSVGDLPGV 120
Query 123 RFKIVKVSGVSLLALFKEKKEKPRS 147
RFK+VKVSGVSLLAL+KEKKEKPRS
Sbjct 121 RFKVVKVSGVSLLALYKEKKEKPRS 145
> pfa:PFC0290w 40S ribosomal protein S23, putative; K02973 small
subunit ribosomal protein S23e
Length=145
Score = 252 bits (644), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 121/145 (83%), Positives = 134/145 (92%), Gaps = 0/145 (0%)
Query 3 MGACKPRGMRTARKLRNRRRVQKWADKQYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIE 62
MG+ KP G+R ARKLR RRR Q+WADK YKK+HLGTRWK+NPF GSSHAKGIVVEK+ IE
Sbjct 1 MGSGKPSGLRAARKLRIRRRTQRWADKSYKKSHLGTRWKSNPFRGSSHAKGIVVEKVAIE 60
Query 63 AKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGV 122
AKQPNSA RKCVRVQLIKNGKKITAFVP DGCLN+IDENDEVLV+GFGRSGH+VGD+PGV
Sbjct 61 AKQPNSAYRKCVRVQLIKNGKKITAFVPGDGCLNFIDENDEVLVSGFGRSGHSVGDLPGV 120
Query 123 RFKIVKVSGVSLLALFKEKKEKPRS 147
+FK+VKV+ VSLLALFKEKKEKPRS
Sbjct 121 KFKVVKVARVSLLALFKEKKEKPRS 145
> dre:100000341 rps23; zgc:171710; K02973 small subunit ribosomal
protein S23e
Length=143
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 122/145 (84%), Positives = 133/145 (91%), Gaps = 2/145 (1%)
Query 3 MGACKPRGMRTARKLRNRRRVQKWADKQYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIE 62
MG C RG+RTARKLRN RR QKW DKQYKKAHLGT KANPFGG+SHAKGIV+EK+G+E
Sbjct 1 MGKC--RGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVE 58
Query 63 AKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGV 122
AKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLN+I+ENDEVLVAGFGR GHAVGDIPGV
Sbjct 59 AKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGV 118
Query 123 RFKIVKVSGVSLLALFKEKKEKPRS 147
RFK+VKV+ VSLLAL+K KKE+PRS
Sbjct 119 RFKVVKVANVSLLALYKGKKERPRS 143
> xla:446737 rps23, MGC86316; ribosomal protein S23; K02973 small
subunit ribosomal protein S23e
Length=143
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 121/145 (83%), Positives = 134/145 (92%), Gaps = 2/145 (1%)
Query 3 MGACKPRGMRTARKLRNRRRVQKWADKQYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIE 62
MG C RG+RTARKLRN RR QKW DKQYKKA+LGT KANPFGG+SHAKGIV+EK+G+E
Sbjct 1 MGKC--RGLRTARKLRNHRREQKWHDKQYKKANLGTALKANPFGGASHAKGIVLEKVGVE 58
Query 63 AKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGV 122
AKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLN+I+ENDEVLVAGFGR+GHAVGDIPGV
Sbjct 59 AKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRAGHAVGDIPGV 118
Query 123 RFKIVKVSGVSLLALFKEKKEKPRS 147
RFK+VKV+ VSLLAL+K KKE+PRS
Sbjct 119 RFKVVKVANVSLLALYKGKKERPRS 143
> mmu:100038875 Gm15450, OTTMUSG00000022083; predicted gene 15450;
K02973 small subunit ribosomal protein S23e
Length=143
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 121/145 (83%), Positives = 133/145 (91%), Gaps = 2/145 (1%)
Query 3 MGACKPRGMRTARKLRNRRRVQKWADKQYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIE 62
MG C RG+RTARKLR+ RR QKW DKQYKKAHLGT KANPFGG+SHAKGIV+EK+G+E
Sbjct 1 MGKC--RGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVE 58
Query 63 AKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGV 122
AKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLN+I+ENDEVLVAGFGR GHAVGDIPGV
Sbjct 59 AKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGV 118
Query 123 RFKIVKVSGVSLLALFKEKKEKPRS 147
RFK+VKV+ VSLLAL+K KKE+PRS
Sbjct 119 RFKVVKVANVSLLALYKGKKERPRS 143
> mmu:66475 Rps23, 2410044J15Rik; ribosomal protein S23; K02973
small subunit ribosomal protein S23e
Length=143
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 121/145 (83%), Positives = 133/145 (91%), Gaps = 2/145 (1%)
Query 3 MGACKPRGMRTARKLRNRRRVQKWADKQYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIE 62
MG C RG+RTARKLR+ RR QKW DKQYKKAHLGT KANPFGG+SHAKGIV+EK+G+E
Sbjct 1 MGKC--RGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVE 58
Query 63 AKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGV 122
AKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLN+I+ENDEVLVAGFGR GHAVGDIPGV
Sbjct 59 AKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGV 118
Query 123 RFKIVKVSGVSLLALFKEKKEKPRS 147
RFK+VKV+ VSLLAL+K KKE+PRS
Sbjct 119 RFKVVKVANVSLLALYKGKKERPRS 143
> hsa:6228 RPS23, FLJ35016; ribosomal protein S23; K02973 small
subunit ribosomal protein S23e
Length=143
Score = 247 bits (630), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 121/145 (83%), Positives = 133/145 (91%), Gaps = 2/145 (1%)
Query 3 MGACKPRGMRTARKLRNRRRVQKWADKQYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIE 62
MG C RG+RTARKLR+ RR QKW DKQYKKAHLGT KANPFGG+SHAKGIV+EK+G+E
Sbjct 1 MGKC--RGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVE 58
Query 63 AKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGV 122
AKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLN+I+ENDEVLVAGFGR GHAVGDIPGV
Sbjct 59 AKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGV 118
Query 123 RFKIVKVSGVSLLALFKEKKEKPRS 147
RFK+VKV+ VSLLAL+K KKE+PRS
Sbjct 119 RFKVVKVANVSLLALYKGKKERPRS 143
> mmu:100503854 40S ribosomal protein S23-like
Length=143
Score = 244 bits (622), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 120/145 (82%), Positives = 132/145 (91%), Gaps = 2/145 (1%)
Query 3 MGACKPRGMRTARKLRNRRRVQKWADKQYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIE 62
MG C RG+RTARKLR+ RR QKW DKQYKKAHLGT KANPFGG+SHAKGIV+EK+G+E
Sbjct 1 MGKC--RGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVE 58
Query 63 AKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGV 122
AKQPNSAIRKCVRVQLIKNGKKITAFVP DGCLN+I+ENDEVLVAGF R GHAVGDIPGV
Sbjct 59 AKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFRRKGHAVGDIPGV 118
Query 123 RFKIVKVSGVSLLALFKEKKEKPRS 147
RFK+VKV+ VSLLAL+K KKE+PRS
Sbjct 119 RFKVVKVANVSLLALYKGKKERPRS 143
> cel:F28D1.7 rps-23; Ribosomal Protein, Small subunit family
member (rps-23); K02973 small subunit ribosomal protein S23e
Length=143
Score = 242 bits (618), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 113/141 (80%), Positives = 132/141 (93%), Gaps = 0/141 (0%)
Query 7 KPRGMRTARKLRNRRRVQKWADKQYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIEAKQP 66
KP+G+ TARKL+ R+ Q+W DK+YKKAH+GTRWK+NPFGG+SHAKGIV+EK+G+EAKQP
Sbjct 3 KPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQP 62
Query 67 NSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGVRFKI 126
NSAIRKCVRVQLIKNGKKITAFVP DGCLN+++ENDEVLV+GFGRSGHAVGDIPGVRFKI
Sbjct 63 NSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKI 122
Query 127 VKVSGVSLLALFKEKKEKPRS 147
VKV+ SL+ALFK KKE+PRS
Sbjct 123 VKVANTSLIALFKGKKERPRS 143
> ath:AT5G02960 40S ribosomal protein S23 (RPS23B); K02973 small
subunit ribosomal protein S23e
Length=142
Score = 234 bits (598), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 116/141 (82%), Positives = 124/141 (87%), Gaps = 1/141 (0%)
Query 7 KPRGMRTARKLRNRRRVQKWADKQYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIEAKQP 66
K RGM RKL+ R Q+WADKQYKK+HLG WK PF GSSHAKGIV+EK+GIEAKQP
Sbjct 3 KTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQP 61
Query 67 NSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGVRFKI 126
NSAIRKC RVQLIKNGKKI AFVP DGCLNYI+ENDEVL+AGFGR GHAVGDIPGVRFK+
Sbjct 62 NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121
Query 127 VKVSGVSLLALFKEKKEKPRS 147
VKVSGVSLLALFKEKKEKPRS
Sbjct 122 VKVSGVSLLALFKEKKEKPRS 142
> mmu:667414 Gm8618, EG667414; predicted gene 8618
Length=143
Score = 234 bits (597), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 115/145 (79%), Positives = 130/145 (89%), Gaps = 2/145 (1%)
Query 3 MGACKPRGMRTARKLRNRRRVQKWADKQYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIE 62
MG C RG+RTARKLR+ R+ QKW D+QYKKAHLGT KANPFGG+SHAKGIV+EK+G+E
Sbjct 1 MGKC--RGLRTARKLRSHRQDQKWHDRQYKKAHLGTALKANPFGGASHAKGIVLEKVGVE 58
Query 63 AKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGV 122
KQPNSAIRK VRVQLIKNGKKITAFVP DGCLN+I+ENDEV VAGFGR GHAVGD+PGV
Sbjct 59 VKQPNSAIRKRVRVQLIKNGKKITAFVPNDGCLNFIEENDEVPVAGFGRKGHAVGDVPGV 118
Query 123 RFKIVKVSGVSLLALFKEKKEKPRS 147
RFK+VKV+ VSLLAL+K KKE+PRS
Sbjct 119 RFKVVKVANVSLLALYKGKKERPRS 143
> sce:YPR132W RPS23B; Rps23bp; K02973 small subunit ribosomal
protein S23e
Length=145
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 114/145 (78%), Positives = 129/145 (88%), Gaps = 0/145 (0%)
Query 3 MGACKPRGMRTARKLRNRRRVQKWADKQYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIE 62
MG KPRG+ +ARKLR RR +WA+ YKK LGT +K++PFGGSSHAKGIV+EKLGIE
Sbjct 1 MGKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIE 60
Query 63 AKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGV 122
+KQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN++DENDEVL+AGFGR G A GDIPGV
Sbjct 61 SKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGV 120
Query 123 RFKIVKVSGVSLLALFKEKKEKPRS 147
RFK+VKVSGVSLLAL+KEKKEKPRS
Sbjct 121 RFKVVKVSGVSLLALWKEKKEKPRS 145
> sce:YGR118W RPS23A; Rps23ap; K02973 small subunit ribosomal
protein S23e
Length=145
Score = 233 bits (594), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 114/145 (78%), Positives = 129/145 (88%), Gaps = 0/145 (0%)
Query 3 MGACKPRGMRTARKLRNRRRVQKWADKQYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIE 62
MG KPRG+ +ARKLR RR +WA+ YKK LGT +K++PFGGSSHAKGIV+EKLGIE
Sbjct 1 MGKGKPRGLNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIE 60
Query 63 AKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGV 122
+KQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN++DENDEVL+AGFGR G A GDIPGV
Sbjct 61 SKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGV 120
Query 123 RFKIVKVSGVSLLALFKEKKEKPRS 147
RFK+VKVSGVSLLAL+KEKKEKPRS
Sbjct 121 RFKVVKVSGVSLLALWKEKKEKPRS 145
> ath:AT3G09680 40S ribosomal protein S23 (RPS23A); K02973 small
subunit ribosomal protein S23e
Length=142
Score = 225 bits (574), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 112/141 (79%), Positives = 121/141 (85%), Gaps = 1/141 (0%)
Query 7 KPRGMRTARKLRNRRRVQKWADKQYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIEAKQP 66
K RGM RKL+ R Q+WADK YKK++ G WK PF SSHAKGIV+EK+GIEAKQP
Sbjct 3 KTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAKQP 61
Query 67 NSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGVRFKI 126
NSAIRKC RVQLIKNGKKI AFVP DGCLNYI+ENDEVL+AGFGR GHAVGDIPGVRFK+
Sbjct 62 NSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKV 121
Query 127 VKVSGVSLLALFKEKKEKPRS 147
VKVSGVSLLALFKEKKEKPRS
Sbjct 122 VKVSGVSLLALFKEKKEKPRS 142
> mmu:668809 Gm9372, EG668809; predicted gene 9372
Length=155
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/141 (68%), Positives = 116/141 (82%), Gaps = 0/141 (0%)
Query 7 KPRGMRTARKLRNRRRVQKWADKQYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIEAKQP 66
K G+RTARKL + RR QKW DKQ+KKAHLG KA PFGG+S AKGIV+EK+G+ KQP
Sbjct 15 KCHGLRTARKLCSHRRDQKWHDKQFKKAHLGIAPKAIPFGGASRAKGIVLEKVGVGGKQP 74
Query 67 NSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGVRFKI 126
NSAIR C RVQL+KN KKITAF+ DGCLN+I+ENDE+LVAGFG+ GHAVGD PGV F++
Sbjct 75 NSAIRNCARVQLVKNSKKITAFMLSDGCLNFIEENDELLVAGFGQKGHAVGDNPGVCFEV 134
Query 127 VKVSGVSLLALFKEKKEKPRS 147
VK++ VS LAL+K K E+PRS
Sbjct 135 VKLANVSRLALYKGKMERPRS 155
> dre:100332638 ribosomal protein S23-like
Length=55
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/57 (78%), Positives = 49/57 (85%), Gaps = 2/57 (3%)
Query 3 MGACKPRGMRTARKLRNRRRVQKWADKQYKKAHLGTRWKANPFGGSSHAKGIVVEKL 59
MG C RG+RTARKLRN RR QKW DKQYKKAHLGT KANPFGG+SHAKGIV+EK+
Sbjct 1 MGKC--RGLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKV 55
> xla:380337 mrps12, MGC64304; mitochondrial ribosomal protein
S12
Length=150
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 55/85 (64%), Gaps = 8/85 (9%)
Query 44 PFGGSSHAKGIVVEKLGIEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDE 103
P G KG+V++ + + K+PNSA RKC RV+L NGK++ F+P +G + + E++
Sbjct 62 PTFGCPQLKGVVLKTMIRKPKKPNSANRKCARVRL-SNGKEVICFIPGEG--HNLQEHNI 118
Query 104 VLVAGFGRSGHAVGDIPGVRFKIVK 128
VLV G GR+ D+PGV+ KIV+
Sbjct 119 VLVEG-GRT----QDLPGVKLKIVR 138
> mmu:24030 Mrps12, AI327385, Rpms12, rps12; mitochondrial ribosomal
protein S12
Length=139
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Query 41 KANPFGGSSHAKGIVVEKLGIEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDE 100
+ P G KG+V+ + K+PNSA RKC RV+L GK+ F+P +G + + E
Sbjct 48 RLGPTEGRPQLKGVVLRTFIRKPKKPNSANRKCCRVRL-STGKEAVCFIPGEG--HTLQE 104
Query 101 NDEVLVAGFGRSGHAVGDIPGVRFKIVK 128
+ VLV G GR+ D+PGV+ K+V+
Sbjct 105 HHVVLVEG-GRT----QDLPGVKLKVVR 127
> hsa:6183 MRPS12, MPR-S12, MT-RPS12, RPMS12, RPS12, RPSM12; mitochondrial
ribosomal protein S12
Length=138
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query 41 KANPFGGSSHAKGIVVEKLGIEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDE 100
K P G KG+V+ + K+PNSA RKC RV+L G++ F+P +G + + E
Sbjct 48 KLGPTEGRPQLKGVVLCTFTRKPKKPNSANRKCCRVRL-STGREAVCFIPGEG--HTLQE 104
Query 101 NDEVLVAGFGRSGHAVGDIPGVRFKIVK 128
+ VLV G GR+ D+PGV+ +V+
Sbjct 105 HQIVLVEG-GRT----QDLPGVKLTVVR 127
> ath:ArthCp047 rps12; ribosomal protein S12; K02992 small subunit
ribosomal protein S7
Length=123
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query 41 KANPFGGSSHAKGIVVEKLGIEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDE 100
K+ G +G I K+PNSA+RK RV+L +G +ITA++P G + + E
Sbjct 20 KSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLT-SGFEITAYIP--GIGHNLQE 76
Query 101 NDEVLVAGFGRSGHAVGDIPGVRFKIVK 128
+ VLV G GR V D+PGVR+ IV+
Sbjct 77 HSVVLVRG-GR----VKDLPGVRYHIVR 99
> ath:ArthCp001 rps12; ribosomal protein S12
Length=123
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query 41 KANPFGGSSHAKGIVVEKLGIEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDE 100
K+ G +G I K+PNSA+RK RV+L +G +ITA++P G + + E
Sbjct 20 KSPALRGCPQRRGTCTRVYTITPKKPNSALRKVARVRLT-SGFEITAYIP--GIGHNLQE 76
Query 101 NDEVLVAGFGRSGHAVGDIPGVRFKIVK 128
+ VLV G GR V D+PGVR+ IV+
Sbjct 77 HSVVLVRG-GR----VKDLPGVRYHIVR 99
> sce:YNR036C MRPS12; Mitochondrial protein; may interact with
ribosomes based on co-purification experiments; similar to
E. coli and human mitochondrial S12 ribosomal proteins
Length=153
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query 52 KGIVVEKLGIEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGR 111
KG+V+ + ++ K+PNSA RK RV+L NG ++A++P +G + E+ V V G GR
Sbjct 59 KGVVLRVMVLKPKKPNSAQRKACRVRLT-NGNVVSAYIPGEG--HDAQEHSIVYVRG-GR 114
Query 112 SGHAVGDIPGVRFKIVKVSG 131
D+PGV++ +++ +G
Sbjct 115 ----CQDLPGVKYHVIRGAG 130
> tgo:TGME49_102055 ribosomal protein S23, putative
Length=121
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 52/84 (61%), Gaps = 8/84 (9%)
Query 45 FGGSSHAKGIVVEKLGIEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEV 104
F KG+ ++ K+PNSA+RK +++L KN K+I A++P +G + + +++ V
Sbjct 22 FYTKPQIKGLCIKVFTRTPKKPNSALRKIAKIKL-KNKKEILAYIPGEG--HALQDHNFV 78
Query 105 LVAGFGRSGHAVGDIPGVRFKIVK 128
L+ GR V D+PG+++K+++
Sbjct 79 LIKK-GR----VQDLPGIKYKVIR 97
> cel:T03D8.2 hypothetical protein
Length=157
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query 47 GSSHAKGIVVEKLGIEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLV 106
G SH KGIV++ + K+PNS RKC V+L G ++ A++P G + + E+ +VLV
Sbjct 72 GYSHYKGIVLKTVIRHPKKPNSGNRKCAIVRL-STGAEVCAYIPNVG--HNLQEHSQVLV 128
Query 107 AG 108
G
Sbjct 129 KG 130
> bbo:BBOV_V000340 ribosomal protein S12
Length=123
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 9/67 (13%)
Query 61 IEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIP 120
+ K+PNSA+RK ++ L N K + A+VP + + I +N VL+ G V D+P
Sbjct 40 MSPKKPNSAVRKVIKTTL--NKKTVLAYVPGENVI--IPKNSRVLI-----KGGNVPDLP 90
Query 121 GVRFKIV 127
GV++K++
Sbjct 91 GVKYKVI 97
> eco:b3342 rpsL, asuB, ECK3329, JW3304, strA; 30S ribosomal subunit
protein S12; K02950 small subunit ribosomal protein S12
Length=124
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%), Gaps = 8/77 (10%)
Query 52 KGIVVEKLGIEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGR 111
+G+ K+PNSA+RK RV+L NG ++T+++ +G + + E+ +L+ G GR
Sbjct 31 RGVCTRVYTTTPKKPNSALRKVCRVRLT-NGFEVTSYIGGEG--HNLQEHSVILIRG-GR 86
Query 112 SGHAVGDIPGVRFKIVK 128
V D+PGVR+ V+
Sbjct 87 ----VKDLPGVRYHTVR 99
> tpv:TP05_0017 rps12; ribosomal protein S12
Length=124
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 15/102 (14%)
Query 45 FGGSSHAKGIVVEKLGIEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEV 104
+ +G + + + K+PNSA RK ++L KN KKI A++P G + + + V
Sbjct 21 LNHNPQLEGFLCSIISMSPKKPNSAKRKVGIIEL-KNNKKIKAYIP--GERSVVRDKTRV 77
Query 105 LVAGFGRSGHAVGDIPGVRFKIVKVSGVSLLALFKEKKEKPR 146
L+ G D+PGV KIV L + +++KPR
Sbjct 78 LIRGGN-----TRDLPGVNHKIV-------LNMMNCREDKPR 107
> tgo:TGME49_019770 ribosomal protein S12, putative
Length=380
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 59/115 (51%), Gaps = 14/115 (12%)
Query 30 QYKKAHLGTRWKANPFGGSSHAKGIVVEKLGIEAKQPNSAIRKCVRVQLIKNGKKITAFV 89
+ K ++ ++W G+ KGI V+ ++PNS +RK RV+L G+ + ++
Sbjct 198 KLKPPNIRSKW----LEGAPQKKGICVKVRVQTPRKPNSGLRKVARVRL-STGRTVLVYI 252
Query 90 PRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGVRFKIVKVSGVSLLALFKEKKEK 144
P G + ++ + VLV G GR D+PG +K V+ GV+ L K ++ K
Sbjct 253 P--GIGHNLNVHSVVLVRG-GR----CKDVPGCNYKAVR--GVADLLPVKNRERK 298
> bbo:BBOV_IV007080 23.m06072; ribosomal protein S12
Length=294
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query 47 GSSHAKGIVVEKLGIEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLV 106
G KG+ V + ++PNS +RK RV+L G+ +T VP +G + + + VLV
Sbjct 127 GCPQKKGVCVTIRVVTPRKPNSGLRKVARVRL-STGRTVTCHVPGEG--HNLHTHSVVLV 183
Query 107 AGFGRSGHAVGDIPGVRFKIVK 128
G GR D+ G +K+V+
Sbjct 184 RG-GR----CQDVSGCHYKVVR 200
> tpv:TP01_0505 40S ribosomal protein S12
Length=278
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query 47 GSSHAKGIVVEKLGIEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLV 106
G+ KGIVV + ++PNS +RK RV+L G+ +T +P G + + + VLV
Sbjct 111 GAPQKKGIVVTVRLVTPRKPNSGLRKVARVRL-TTGRTVTCHIPGQG--HNLHTHSVVLV 167
Query 107 AGFGRSGHAVGDIPGVRFKIVK 128
G GR D+ G + +V+
Sbjct 168 RG-GR----CQDVSGCHYTVVR 184
> pfa:PFD0600c mitochondrial ribosomal protein S12 precursor,
putative
Length=336
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
Query 40 WKANPFGGSSHAKGIVVEKLGIEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYID 99
W++ G+ +GI ++ K+PNS ++K RV+L G+ ++ ++P G + ++
Sbjct 160 WRSKWLEGAPQKRGICLKVRVQTPKKPNSGLKKIARVRL-STGRIVSVYIP--GIGHNLN 216
Query 100 ENDEVLVAGFGRSGHAVGDIPGVRFKIVK 128
+ +LV G GR DIPG +K ++
Sbjct 217 THSIILVRG-GR----CKDIPGCNYKAIR 240
> cel:T23D8.9 sys-1; SYmmetrical Sister cell hermaphrodite gonad
defect family member (sys-1)
Length=811
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 13/16 (81%), Gaps = 0/16 (0%)
Query 86 TAFVPRDGCLNYIDEN 101
T FVP+DG LN IDEN
Sbjct 653 TPFVPKDGVLNVIDEN 668
> ath:ArthMp085 rps12; ribosomal protein S12
Length=125
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query 64 KQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGVR 123
K+PNSA RK +V+L N I A +P +G + E+ VL+ G GR V D PGV+
Sbjct 43 KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRG-GR----VKDSPGVK 94
Query 124 FKIVK 128
++
Sbjct 95 SHCIR 99
> ath:AT2G07675 ribosomal protein S12 mitochondrial family protein
Length=125
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 8/65 (12%)
Query 64 KQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLNYIDENDEVLVAGFGRSGHAVGDIPGVR 123
K+PNSA RK +V+L N I A +P +G + E+ VL+ G GR V D PGV+
Sbjct 43 KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRG-GR----VKDSPGVK 94
Query 124 FKIVK 128
++
Sbjct 95 SHCIR 99
> tpv:TP01_0543 transcription factor
Length=140
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 26/45 (57%), Gaps = 0/45 (0%)
Query 52 KGIVVEKLGIEAKQPNSAIRKCVRVQLIKNGKKITAFVPRDGCLN 96
+G++ ++ E ++PN +R C+ +LI + +++ +GC N
Sbjct 29 QGVIRKRGNSEGEKPNPKLRACISCRLIMSEDQVSVTFYENGCGN 73
Lambda K H
0.320 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2938175820
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40