bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_2815_orf1
Length=185
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_063050 60S ribosomal protein L13, putative ; K02873... 133 4e-31
cpv:cgd2_2990 60S ribosomal protein L13 ; K02873 large subunit... 103 4e-22
ath:AT5G23900 60S ribosomal protein L13 (RPL13D); K02873 large... 99.0 7e-21
ath:AT3G49010 ATBBC1; ATBBC1 (ARABIDOPSIS THALIANA BREAST BASI... 98.6 1e-20
cel:C32E8.2 rpl-13; Ribosomal Protein, Large subunit family me... 94.0 3e-19
ath:AT3G48960 60S ribosomal protein L13 (RPL13C); K02873 large... 86.3 5e-17
tpv:TP01_0199 60S ribosomal protein L13e; K02873 large subunit... 84.7 2e-16
dre:378961 rpl13, zgc:92272; ribosomal protein L13; K02873 lar... 82.8 6e-16
hsa:6137 RPL13, BBC1, D16S444E, FLJ27453, FLJ27454, MGC117342,... 75.9 8e-14
xla:446306 rpl13, MGC81947; ribosomal protein L13 (EC:3.6.5.3)... 75.1 1e-13
xla:100049095 hypothetical protein LOC100049095; K02873 large ... 74.7 2e-13
mmu:270106 Rpl13, L13; ribosomal protein L13 (EC:3.6.5.3); K02... 74.7 2e-13
mmu:100040605 Gm15710, OTTMUSG00000025606; predicted gene 15710 74.7
mmu:100039656 Gm12918, OTTMUSG00000009186; predicted gene 1291... 74.7 2e-13
mmu:100040416 Gm10071; predicted gene 10071 73.9
sce:YDL082W RPL13A; L13A; K02873 large subunit ribosomal prote... 72.8 6e-13
bbo:BBOV_IV005370 23.m06407; ribosomal protein L13; K02873 lar... 71.2 2e-12
pfa:PF08_0075 60S ribosomal protein L13-2, putative; K02873 la... 69.3 7e-12
sce:YMR142C RPL13B; L13B; K02873 large subunit ribosomal prote... 67.4 3e-11
> tgo:TGME49_063050 60S ribosomal protein L13, putative ; K02873
large subunit ribosomal protein L13e
Length=319
Score = 133 bits (334), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/109 (58%), Positives = 76/109 (69%), Gaps = 3/109 (2%)
Query 1 ACCCFPQAKMVSRSAQLPNVHLRKEWQRFVRTWFDQPARKQRRRLQRQKKAAKLGVRPLG 60
+ CF KMVS++ LPNVHL K WQR+V+TWF+QP RKQ RRL+RQ+KAAKLGV P G
Sbjct 99 SVVCFSSVKMVSKNNVLPNVHLHKWWQRYVKTWFNQPGRKQSRRLRRQEKAAKLGVVPSG 158
Query 61 LLRPAVRCPTQKYNIKLREGRGFTLEELK---VSPDCCCCCCCCCCCTR 106
LLRP V PTQ+YN+K+R GRGFTLEELK +SP R
Sbjct 159 LLRPIVHPPTQRYNLKVRAGRGFTLEELKSVGLSPRVALSIGVAVDHRR 207
> cpv:cgd2_2990 60S ribosomal protein L13 ; K02873 large subunit
ribosomal protein L13e
Length=207
Score = 103 bits (257), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 63/99 (63%), Gaps = 10/99 (10%)
Query 17 LPNVHLRKEWQRFVRTWFDQPARKQRRRLQRQKKAAKLGVRPLGLLRPAVRCPTQKYNIK 76
+PNVH K ++R+++TW++QP RKQ RR+ RQK A+ G RP+G+LRP V PTQ+YN+K
Sbjct 7 IPNVHYHKNYKRWIKTWYNQPGRKQSRRIARQKAVAEAGFRPVGMLRPIVHPPTQRYNMK 66
Query 77 LREGRGFTLEELKVSPDCCCCCCCCCCCTRPASLLGLCC 115
R GRGFTLEEL C + A +G+
Sbjct 67 TRLGRGFTLEEL----------SACGINKKAAMSIGIAV 95
> ath:AT5G23900 60S ribosomal protein L13 (RPL13D); K02873 large
subunit ribosomal protein L13e
Length=206
Score = 99.0 bits (245), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/102 (51%), Positives = 64/102 (62%), Gaps = 5/102 (4%)
Query 17 LPNVHLRKEWQRFVRTWFDQPARKQRRRLQRQKKAAKLGVRPL-GLLRPAVRCPTQKYNI 75
+P+ H RK WQ +V+TWF+QPARK RRR+ RQKKA K+ RP G LRP V T KYN+
Sbjct 7 IPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQTLKYNM 66
Query 76 KLREGRGFTLEELKVS--PDCCCCCCCCCCCTRPA--SLLGL 113
K+R G+GFTLEELKV+ P R SL GL
Sbjct 67 KVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGL 108
> ath:AT3G49010 ATBBC1; ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC
CONSERVED 1); structural constituent of ribosome
Length=206
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/102 (50%), Positives = 63/102 (61%), Gaps = 5/102 (4%)
Query 17 LPNVHLRKEWQRFVRTWFDQPARKQRRRLQRQKKAAKLGVRPL-GLLRPAVRCPTQKYNI 75
+PN H +K WQ +V+TWF+QPARK RRR+ RQKKA K+ RP G LRP V T KYN+
Sbjct 7 IPNGHFKKHWQNYVKTWFNQPARKTRRRIARQKKAVKIFPRPTSGPLRPVVHGQTLKYNM 66
Query 76 KLREGRGFTLEELKVS--PDCCCCCCCCCCCTRPA--SLLGL 113
K+R G+GFTLEELK + P R SL GL
Sbjct 67 KVRTGKGFTLEELKAAGIPKKLAPTIGIAVDHRRKNRSLEGL 108
> cel:C32E8.2 rpl-13; Ribosomal Protein, Large subunit family
member (rpl-13); K02873 large subunit ribosomal protein L13e
Length=207
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/84 (55%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query 10 MVSRSAQ-LPNVHLRKEWQRFVRTWFDQPARKQRRRLQRQKKAAKLGVRPL-GLLRPAVR 67
M R Q L N H RK W + ++TWFDQPARK RRR RQ KA ++ RP+ GLLR VR
Sbjct 1 MAPRGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVR 60
Query 68 CPTQKYNIKLREGRGFTLEELKVS 91
CP ++YN K R GRGF+L+ELK +
Sbjct 61 CPQKRYNTKTRLGRGFSLQELKAA 84
> ath:AT3G48960 60S ribosomal protein L13 (RPL13C); K02873 large
subunit ribosomal protein L13e
Length=206
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/76 (52%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query 17 LPNVHLRKEWQRFVRTWFDQPARKQRRRLQRQKKAAKLGVRPL-GLLRPAVRCPTQKYNI 75
+PN H +K+W+ +V+T F+QPA K RRR+ RQ KA K+ RP G +RP V T YN+
Sbjct 7 IPNGHFKKKWENYVKTSFNQPAMKTRRRIARQNKAVKIFPRPTAGPIRPVVHAQTLTYNM 66
Query 76 KLREGRGFTLEELKVS 91
K+R G+GFTLEELK +
Sbjct 67 KVRAGKGFTLEELKAA 82
> tpv:TP01_0199 60S ribosomal protein L13e; K02873 large subunit
ribosomal protein L13e
Length=205
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 56/82 (68%), Gaps = 0/82 (0%)
Query 10 MVSRSAQLPNVHLRKEWQRFVRTWFDQPARKQRRRLQRQKKAAKLGVRPLGLLRPAVRCP 69
MV + L +VH K RFV+ +Q +K+RRRL RQ+KAA G+ P G LRP V P
Sbjct 1 MVKHNNMLSDVHRVKCSHRFVKPVLNQAGKKKRRRLARQRKAAASGLTPTGYLRPLVHMP 60
Query 70 TQKYNIKLREGRGFTLEELKVS 91
+++YN KLR GRGFTL+ELKV+
Sbjct 61 SRRYNYKLRFGRGFTLQELKVA 82
> dre:378961 rpl13, zgc:92272; ribosomal protein L13; K02873 large
subunit ribosomal protein L13e
Length=211
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 48/81 (59%), Positives = 60/81 (74%), Gaps = 1/81 (1%)
Query 12 SRSAQLPNVHLRKEWQRFVRTWFDQPARKQRRRLQRQKKAAKLGVRPL-GLLRPAVRCPT 70
SR+ + N H K+WQ+ VRTWF+QPARK RRR RQ KA ++ RP+ G LRP VRCPT
Sbjct 4 SRNGMILNPHFHKDWQKRVRTWFNQPARKIRRRKARQAKARRIAPRPVSGPLRPVVRCPT 63
Query 71 QKYNIKLREGRGFTLEELKVS 91
+Y+ K+R GRGFTLEELK +
Sbjct 64 IRYHTKVRAGRGFTLEELKAA 84
> hsa:6137 RPL13, BBC1, D16S444E, FLJ27453, FLJ27454, MGC117342,
MGC71373; ribosomal protein L13; K02873 large subunit ribosomal
protein L13e
Length=211
Score = 75.9 bits (185), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query 12 SRSAQLPNVHLRKEWQRFVRTWFDQPARKQRRRLQRQKKAAKLGVRPL-GLLRPAVRCPT 70
SR+ + H K+WQR V TWF+QPARK RRR RQ KA ++ RP G +RP VRCPT
Sbjct 4 SRNGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPT 63
Query 71 QKYNIKLREGRGFTLEELKVSPDCCCCCCCCCCCTRP 107
+Y+ K+R GRGF+LEEL+V+ P
Sbjct 64 VRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDP 100
> xla:446306 rpl13, MGC81947; ribosomal protein L13 (EC:3.6.5.3);
K02873 large subunit ribosomal protein L13e
Length=211
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query 12 SRSAQLPNVHLRKEWQRFVRTWFDQPARKQRRRLQRQKKAAKLGVRPL-GLLRPAVRCPT 70
SR+ + H K+WQR V TWF+QPARK RRR RQ KA + RP+ G +RP VRCPT
Sbjct 4 SRNGMILKPHFHKDWQRRVTTWFNQPARKIRRRKARQVKARLVAPRPVSGPVRPVVRCPT 63
Query 71 QKYNIKLREGRGFTLEELKVSPDCCCCCCCCCCCTRP 107
+Y+ K+R GRGF+LEELK + P
Sbjct 64 NRYHTKVRAGRGFSLEELKAAGINKKVARTIGISVDP 100
> xla:100049095 hypothetical protein LOC100049095; K02873 large
subunit ribosomal protein L13e
Length=211
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query 12 SRSAQLPNVHLRKEWQRFVRTWFDQPARKQRRRLQRQKKAAKLGVRPL-GLLRPAVRCPT 70
SR+ + H K+WQ+ V TWF+QPARK RRR RQ KA ++ RP G +RP VRCPT
Sbjct 4 SRNGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPT 63
Query 71 QKYNIKLREGRGFTLEELKVSPDCCCCCCCCCCCTRP 107
+Y+ K+R GRGF+LEEL+V+ P
Sbjct 64 VRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDP 100
> mmu:270106 Rpl13, L13; ribosomal protein L13 (EC:3.6.5.3); K02873
large subunit ribosomal protein L13e
Length=211
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query 12 SRSAQLPNVHLRKEWQRFVRTWFDQPARKQRRRLQRQKKAAKLGVRPL-GLLRPAVRCPT 70
SR+ + H K+WQ+ V TWF+QPARK RRR RQ KA ++ RP G +RP VRCPT
Sbjct 4 SRNGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPT 63
Query 71 QKYNIKLREGRGFTLEELKVSPDCCCCCCCCCCCTRP 107
+Y+ K+R GRGF+LEEL+V+ P
Sbjct 64 VRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDP 100
> mmu:100040605 Gm15710, OTTMUSG00000025606; predicted gene 15710
Length=211
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query 12 SRSAQLPNVHLRKEWQRFVRTWFDQPARKQRRRLQRQKKAAKLGVRPL-GLLRPAVRCPT 70
SR+ + H K+WQ+ V TWF+QPARK RRR RQ KA ++ RP G +RP VRCPT
Sbjct 4 SRNGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPT 63
Query 71 QKYNIKLREGRGFTLEELKVSPDCCCCCCCCCCCTRP 107
+Y+ K+R GRGF+LEEL+V+ P
Sbjct 64 VRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDP 100
> mmu:100039656 Gm12918, OTTMUSG00000009186; predicted gene 12918;
K02873 large subunit ribosomal protein L13e
Length=211
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 59/97 (60%), Gaps = 1/97 (1%)
Query 12 SRSAQLPNVHLRKEWQRFVRTWFDQPARKQRRRLQRQKKAAKLGVRPL-GLLRPAVRCPT 70
SR+ + H K+WQ+ V TWF+QPARK RRR RQ KA ++ RP G +RP VRCPT
Sbjct 4 SRNGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPT 63
Query 71 QKYNIKLREGRGFTLEELKVSPDCCCCCCCCCCCTRP 107
+Y+ K+R GRGF+LEEL+V+ P
Sbjct 64 VRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDP 100
> mmu:100040416 Gm10071; predicted gene 10071
Length=211
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/97 (46%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query 12 SRSAQLPNVHLRKEWQRFVRTWFDQPARKQRRRLQRQKKAAKLGVRPL-GLLRPAVRCPT 70
SR+ + H K+WQ+ V TWF+QPARK RRR RQ KA + RP G +RP VRCPT
Sbjct 4 SRNGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARSIAPRPASGPIRPIVRCPT 63
Query 71 QKYNIKLREGRGFTLEELKVSPDCCCCCCCCCCCTRP 107
+Y+ K+R GRGF+LEEL+V+ P
Sbjct 64 VRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDP 100
> sce:YDL082W RPL13A; L13A; K02873 large subunit ribosomal protein
L13e
Length=199
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 0/81 (0%)
Query 11 VSRSAQLPNVHLRKEWQRFVRTWFDQPARKQRRRLQRQKKAAKLGVRPLGLLRPAVRCPT 70
+S++ + H RK WQ V+ FDQ +K RR R +AAK+ RPL LLRP VR PT
Sbjct 3 ISKNLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARATRAAKIAPRPLDLLRPVVRAPT 62
Query 71 QKYNIKLREGRGFTLEELKVS 91
KYN K+R GRGFTL E+K +
Sbjct 63 VKYNRKVRAGRGFTLAEVKAA 83
> bbo:BBOV_IV005370 23.m06407; ribosomal protein L13; K02873 large
subunit ribosomal protein L13e
Length=202
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/75 (53%), Positives = 53/75 (70%), Gaps = 0/75 (0%)
Query 17 LPNVHLRKEWQRFVRTWFDQPARKQRRRLQRQKKAAKLGVRPLGLLRPAVRCPTQKYNIK 76
LPN H K +F+R DQ RK+RR L R++KAAK GV P+G LRP V P+++YN K
Sbjct 7 LPNAHRVKCSGKFIRAELDQAGRKKRRLLARRQKAAKAGVTPVGYLRPVVHMPSRRYNYK 66
Query 77 LREGRGFTLEELKVS 91
+R GRGFT++ELK +
Sbjct 67 VRLGRGFTIQELKAA 81
> pfa:PF08_0075 60S ribosomal protein L13-2, putative; K02873
large subunit ribosomal protein L13e
Length=215
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/105 (42%), Positives = 59/105 (56%), Gaps = 10/105 (9%)
Query 10 MVSRSAQLPNVHLRKEWQRFVRTWFDQPARKQRRRLQRQKKAAKLGVRPLGLLRPAVRCP 69
MV+ + LPNVHL K WQR VR F + +K++RRL R+K+ G P+ L P V CP
Sbjct 1 MVAHNNVLPNVHLHKWWQRHVRVNFSKNIKKKKRRLLREKRRKANGGTPIEKLHPIVHCP 60
Query 70 TQKYNIKLREGRGFTLEELKVSPDCCCCCCCCCCCTRPASLLGLC 114
TQ+YN + R G+GFT EELK R A +G+C
Sbjct 61 TQRYNFRTRLGKGFTFEELK----------GAGLTPRAAQTIGIC 95
> sce:YMR142C RPL13B; L13B; K02873 large subunit ribosomal protein
L13e
Length=199
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/81 (50%), Positives = 52/81 (64%), Gaps = 0/81 (0%)
Query 11 VSRSAQLPNVHLRKEWQRFVRTWFDQPARKQRRRLQRQKKAAKLGVRPLGLLRPAVRCPT 70
+S++ + H RK WQ V+ FDQ +K RR R +AAK+ RPL LLRP VR PT
Sbjct 3 ISKNLPILKNHFRKHWQERVKVHFDQAGKKVSRRNARAARAAKIAPRPLDLLRPVVRAPT 62
Query 71 QKYNIKLREGRGFTLEELKVS 91
KYN K+R GRGFTL E+K +
Sbjct 63 VKYNRKVRAGRGFTLAEVKAA 83
Lambda K H
0.328 0.135 0.482
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 5106150148
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40