bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_2958_orf1 Length=105 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_017450 REX1 DNA repair domain-containing protein 100 2e-21 bbo:BBOV_I002150 19.m02381; hypothetical protein; K10845 TFIIH... 89.4 2e-18 pfa:PF14_0398 Transcription factor TFIIH complex subunit Tfb5,... 81.3 8e-16 tpv:TP03_0115 hypothetical protein 58.5 5e-09 hsa:404672 GTF2H5, C6orf175, TFB5, TFIIH, TGF2H5, TTD, TTD-A, ... 43.1 2e-04 sce:YDR079C-A TFB5; Component of the RNA polymerase II general... 42.7 3e-04 mmu:66467 Gtf2h5, 2700017P07Rik, 2810432H05Rik, D17Wsu155e; ge... 42.4 3e-04 ath:AT1G12400 DNA binding; K10845 TFIIH basal transcription fa... 34.3 0.097 cel:Y55B1AL.2 hypothetical protein; K10845 TFIIH basal transcr... 33.5 0.16 mmu:218441 Zfyve16, AI035632, B130024H06Rik, B130031L15, mKIAA... 31.2 0.93 ath:AT5G44790 RAN1; RAN1 (RESPONSIVE-TO-ANTAGONIST 1); ATPase,... 30.8 1.1 ath:AT1G62886 DNA binding 30.0 2.0 dre:100005449 zfyve9, si:ch211-57g18.2; zinc finger, FYVE doma... 29.3 2.9 mmu:74068 Asz1, 4933400N19Rik, Gasz, ORF3; ankyrin repeat, SAM... 29.3 3.0 hsa:126402 CCDC105, FLJ40365; coiled-coil domain containing 105 29.3 dre:559694 ectodermal-neural cortex (with BTB-like domain)-lik... 28.5 4.9 hsa:63967 CLSPN, MGC131612, MGC131613, MGC131615; claspin 28.5 5.0 ath:AT1G50830 hypothetical protein 28.5 5.4 dre:100005596 hypothetical LOC100005596 28.1 6.6 tpv:TP02_0649 hypothetical protein 28.1 6.9 ath:AT4G18450 ethylene-responsive factor, putative 27.7 8.2 > tgo:TGME49_017450 REX1 DNA repair domain-containing protein Length=198 Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 48/71 (67%), Positives = 60/71 (84%), Gaps = 0/71 (0%) Query 22 KMVVAIKGILVQCDPPTMEIILQLNETKNFIIEKISEEHVLCSESVCSFLEEEVTRRLEL 81 MV A+KG+LV+CDPPTME+I LNET++FIIE+++EE+VLC E V FLEEEVT+RLEL Sbjct 112 NMVAALKGVLVKCDPPTMEVIRLLNETRDFIIEQLNEEYVLCRECVFDFLEEEVTKRLEL 171 Query 82 AERPLAEMQKE 92 AER AE Q+E Sbjct 172 AERQTAEQQRE 182 > bbo:BBOV_I002150 19.m02381; hypothetical protein; K10845 TFIIH basal transcription factor complex TTD-A subunit Length=75 Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 44/76 (57%), Positives = 57/76 (75%), Gaps = 1/76 (1%) Query 23 MVVAIKGILVQCDPPTMEIILQLNETKNFIIEKISEEHVLCSESVCSFLEEEVTRRLELA 82 MV +++GILV+CDPPTMEI+ Q+NET++FIIE++ E LC ESV FL EEVTRRLE A Sbjct 1 MVTSMRGILVKCDPPTMEIVKQINETRHFIIEQLDESVALCQESVFDFLSEEVTRRLEFA 60 Query 83 ERPLAEMQKEKKANEA 98 ER L + A+E+ Sbjct 61 ER-LTPTDAKTNADES 75 > pfa:PF14_0398 Transcription factor TFIIH complex subunit Tfb5, putative; K10845 TFIIH basal transcription factor complex TTD-A subunit Length=67 Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 40/62 (64%), Positives = 50/62 (80%), Gaps = 0/62 (0%) Query 23 MVVAIKGILVQCDPPTMEIILQLNETKNFIIEKISEEHVLCSESVCSFLEEEVTRRLELA 82 MV AIKG+LV+CD PTM+IIL LNE KNF+IEKIS+ LC E+V FLE+EV ++LE + Sbjct 1 MVTAIKGVLVKCDEPTMQIILMLNEEKNFLIEKISDTVCLCKENVHDFLEKEVIKQLEYS 60 Query 83 ER 84 ER Sbjct 61 ER 62 > tpv:TP03_0115 hypothetical protein Length=54 Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 29/45 (64%), Positives = 37/45 (82%), Gaps = 0/45 (0%) Query 39 MEIILQLNETKNFIIEKISEEHVLCSESVCSFLEEEVTRRLELAE 83 MEI+ Q+NE+K+FIIE+I E LC +SV FL+EEVTRRLE+AE Sbjct 1 MEIVKQINESKHFIIEQIDEGVALCKDSVTQFLKEEVTRRLEIAE 45 > hsa:404672 GTF2H5, C6orf175, TFB5, TFIIH, TGF2H5, TTD, TTD-A, TTDA, bA120J8.2; general transcription factor IIH, polypeptide 5; K10845 TFIIH basal transcription factor complex TTD-A subunit Length=71 Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%) Query 23 MVVAIKGILVQCDPPTMEIILQLNET----KNFIIEKISEEHVLCSESVCSFLEEEVTRR 78 MV +KG+L++CDP + +L L+E+ K FII+ I + HV + + L+E V Sbjct 1 MVNVLKGVLIECDPAMKQFLLYLDESNALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60 Query 79 LE 80 ++ Sbjct 61 MD 62 > sce:YDR079C-A TFB5; Component of the RNA polymerase II general transcription and DNA repair factor TFIIH; involved in transcription initiation and in nucleotide-excision repair; homolog of Chlamydomonas reinhardtii REX1-S protein involved in DNA repair; K10845 TFIIH basal transcription factor complex TTD-A subunit Length=72 Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 1/58 (1%) Query 23 MVVAIKGILVQCDPPTMEIILQLN-ETKNFIIEKISEEHVLCSESVCSFLEEEVTRRL 79 M A KG LVQCDP +ILQ++ + + ++E++ + H+L + S F++ E+ R L Sbjct 1 MARARKGALVQCDPSIKALILQIDAKMSDIVLEELDDTHLLVNPSKVEFVKHELNRLL 58 > mmu:66467 Gtf2h5, 2700017P07Rik, 2810432H05Rik, D17Wsu155e; general transcription factor IIH, polypeptide 5; K10845 TFIIH basal transcription factor complex TTD-A subunit Length=71 Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query 23 MVVAIKGILVQCDPPTMEIILQLNET----KNFIIEKISEEHVLCSESVCSFLEEEVTRR 78 MV +KG+L++CDP + +L L+E K FII+ I + HV + + L+E V Sbjct 1 MVNVLKGVLIECDPAMKQFLLYLDEANALGKKFIIQDIDDTHVFVIAELVNVLQERVGEL 60 Query 79 LE 80 ++ Sbjct 61 MD 62 > ath:AT1G12400 DNA binding; K10845 TFIIH basal transcription factor complex TTD-A subunit Length=71 Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust. Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 6/71 (8%) Query 23 MVVAIKGILVQCDPPTMEIILQLNE----TKNFIIEKISEEHVLCSESVCSFLEEEVT-- 76 MV AIKG+ V CD P + I+ +N ++ FII + H+ V + ++ Sbjct 1 MVNAIKGVFVSCDIPMTQFIVNMNNSMPPSQKFIIHVLDSTHLFVQPHVEQMIRSAISDF 60 Query 77 RRLELAERPLA 87 R E+P + Sbjct 61 RDQNSYEKPTS 71 > cel:Y55B1AL.2 hypothetical protein; K10845 TFIIH basal transcription factor complex TTD-A subunit Length=71 Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 35/62 (56%), Gaps = 4/62 (6%) Query 23 MVVAIKGILVQCDPPTMEIILQLNETKN----FIIEKISEEHVLCSESVCSFLEEEVTRR 78 MV KG+LV DP ++++ L++++ FI+ ++ + H+ + + LE +V + Sbjct 1 MVNVKKGVLVTSDPAFRQLLIHLDDSRQLGSKFIVRELDDTHLFIEKEIVPMLENKVEQI 60 Query 79 LE 80 +E Sbjct 61 ME 62 > mmu:218441 Zfyve16, AI035632, B130024H06Rik, B130031L15, mKIAA0305; zinc finger, FYVE domain containing 16; K04679 MAD, mothers against decapentaplegic interacting protein Length=1528 Score = 31.2 bits (69), Expect = 0.93, Method: Composition-based stats. Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Query 19 FLAKMVVAIKGILVQCDPPTME-IILQLNETKNFIIE 54 FLAK + G++VQ P TME + L L E K+F I+ Sbjct 1321 FLAKSSIVEDGLMVQITPETMEGLRLALREQKDFRIQ 1357 > ath:AT5G44790 RAN1; RAN1 (RESPONSIVE-TO-ANTAGONIST 1); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism / copper ion transmembrane transporter; K01533 Cu2+-exporting ATPase [EC:3.6.3.4] Length=1001 Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 49/92 (53%), Gaps = 11/92 (11%) Query 22 KMVVAIKGILVQCDPPTME-IILQLNETKNFIIEKISEE-------HVLCSESVCSFLEE 73 K+V+ + GIL + D +E I+ +LN + F +++IS E V+ S S+ +EE Sbjct 208 KLVLRVDGILNELDAQVLEGILTRLNGVRQFRLDRISGELEVVFDPEVVSSRSLVDGIEE 267 Query 74 EVTRRLELAERPLAEMQKEKKANEAGAAANTY 105 + + +L R ++ ++ + + G A+N + Sbjct 268 DGFGKFKL--RVMSPYER-LSSKDTGEASNMF 296 > ath:AT1G62886 DNA binding Length=72 Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust. Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 4/36 (11%) Query 23 MVVAIKGILVQCDPPTMEIILQLNE----TKNFIIE 54 MV +IKG+ + CD P + I LN ++ FII+ Sbjct 1 MVNSIKGVFISCDVPMAQFIAHLNNSLPASQKFIIQ 36 > dre:100005449 zfyve9, si:ch211-57g18.2; zinc finger, FYVE domain containing 9; K04679 MAD, mothers against decapentaplegic interacting protein Length=1209 Score = 29.3 bits (64), Expect = 2.9, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 12/63 (19%) Query 11 FFIFK-----FGDFLAKMVVAIKGILVQCDPPTMEIILQ-LNETKNFII------EKISE 58 FF+F +LAK + G++VQ TME + Q L E K+F I ++ ++ Sbjct 986 FFVFSGALKASSGYLAKTSIVEDGVMVQITAETMEALRQALREMKDFSIACGKADQEENQ 1045 Query 59 EHV 61 EHV Sbjct 1046 EHV 1048 > mmu:74068 Asz1, 4933400N19Rik, Gasz, ORF3; ankyrin repeat, SAM and basic leucine zipper domain containing 1 Length=475 Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 10/86 (11%) Query 9 FFFFIFKFGDFLAKMVVAIKGILVQCDPPTMEIILQLNETKNFIIEKISEEHVLCSESVC 68 F F+ K ++ A++ I+ + + +I+L+ +NF + EE V E Sbjct 356 FLNFLLKLNKQCGHLITAVQNIITELPVNSHKIVLEWASPRNFT--SVCEELVSNVED-- 411 Query 69 SFLEEEVTRRLELAERPLAEMQKEKK 94 L EEV R EL ++ MQ E++ Sbjct 412 --LNEEVCRLKELIQK----MQNERE 431 > hsa:126402 CCDC105, FLJ40365; coiled-coil domain containing 105 Length=499 Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 13/55 (23%) Query 43 LQLNETKNFIIEK-------------ISEEHVLCSESVCSFLEEEVTRRLELAER 84 L LNE K ++E + E+ + S+ VC+ L ++ + LEL ER Sbjct 295 LALNEAKRLLVESKDTLVEMAKNEVDVREQQLQISDRVCASLAQKASETLELKER 349 > dre:559694 ectodermal-neural cortex (with BTB-like domain)-like; K10466 kelch-like protein 30 Length=650 Score = 28.5 bits (62), Expect = 4.9, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Query 8 HFFFFIFKFGDFLAKMVVAIKGILVQCDPPTMEIILQLNETKNFIIEKISEEHVLCSESV 67 H+F +F GDF+ + ++ L DP + +L T I K + E ++C+ S Sbjct 56 HYFHSMFS-GDFIESIAARVE--LHDVDPDVLSSLLDFAYTGKLTINKNNVEGLICTSSQ 112 Query 68 CSF 70 F Sbjct 113 LQF 115 > hsa:63967 CLSPN, MGC131612, MGC131613, MGC131615; claspin Length=1275 Score = 28.5 bits (62), Expect = 5.0, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 1/59 (1%) Query 37 PTMEIILQLNETKNFIIE-KISEEHVLCSESVCSFLEEEVTRRLELAERPLAEMQKEKK 94 P +E+ LQ + +F + K S++H+ E + + RRLE ER + ++++ KK Sbjct 130 PCLELSLQSGNSTDFTTDRKSSKKHIHDKEGTAGKAKVKSKRRLEKEERKMEKIRQLKK 188 > ath:AT1G50830 hypothetical protein Length=768 Score = 28.5 bits (62), Expect = 5.4, Method: Composition-based stats. Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 5/46 (10%) Query 51 FIIEKISEEHVLCSESVCSFL--EEEVTRRLELAERPLAEMQKEKK 94 F++ K SE+H C+E +CS + +EE+ RL+ ER LA + E K Sbjct 695 FLVHKNSEKH-RCNEKMCSEVKKQEEIDERLK--ERKLAIKEMELK 737 > dre:100005596 hypothetical LOC100005596 Length=1698 Score = 28.1 bits (61), Expect = 6.6, Method: Composition-based stats. Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%) Query 47 ETKNFIIEKISEEHVLCSESVCSFLEEEVTRRLELAERP 85 E K ++K +EE C E +C FLEE+ TR +L+ P Sbjct 990 EDKECALQKQAEELQKCQEKIC-FLEEKQTRTNDLSVPP 1027 > tpv:TP02_0649 hypothetical protein Length=623 Score = 28.1 bits (61), Expect = 6.9, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Query 32 VQCDPPTMEIILQLNETKNFIIEKISEEHVLC-SESVCSFLEEEVTRRLEL 81 V C + I +QL +T + +I I ++ LC S V F+EE + +EL Sbjct 7 VLCRSTSRTIRIQLIQTMSMLIHNIGKKKTLCESNDVLCFIEELMDLEIEL 57 > ath:AT4G18450 ethylene-responsive factor, putative Length=303 Score = 27.7 bits (60), Expect = 8.2, Method: Compositional matrix adjust. Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%) Query 52 IIEKISEEHVLCSESVCSFLEEEVTRRLELAERPLAEMQKEKKANE 97 +++ + E H C+ S CS E TR L +E +++K +++NE Sbjct 217 VVDGMVENH--CALSYCSTKEHSETRGLRGSEETWFDLRKRRRSNE 260 Lambda K H 0.326 0.139 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2017521068 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40