bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_2996_orf2 Length=196 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_097530 DNA-directed RNA polymerase I subunit RPA2, ... 345 6e-95 bbo:BBOV_II001980 18.m06155; DNA-directed RNA polymerase, beta... 281 1e-75 cpv:cgd1_2770 RNA polymerase 1 beta subunit ; K03002 DNA-direc... 244 1e-64 tpv:TP04_0334 DNA-directed RNA polymerase subunit beta (EC:2.7... 240 2e-63 pfa:PF11_0358 DNA-directed RNA polymerase 1, subunit 2, putati... 238 1e-62 mmu:20017 Polr1b, 128kDa, D630020H17Rik, RPA116, RPA135, RPA2,... 218 2e-56 cel:F14B4.3 hypothetical protein; K03002 DNA-directed RNA poly... 213 3e-55 xla:379695 polr1b, MGC68946; polymerase (RNA) I polypeptide B,... 212 8e-55 hsa:84172 POLR1B, FLJ10816, FLJ21921, MGC131780, RPA135, RPA2,... 210 3e-54 dre:325603 polr1b, MGC113960, MGC158198, MGC192771, MGC66298, ... 205 7e-53 sce:YPR010C RPA135, RPA2, RRN2, SRP3; A135 (EC:2.7.7.6); K0300... 201 1e-51 ath:AT1G29940 NRPA2; NRPA2; DNA binding / DNA-directed RNA pol... 195 7e-50 tpv:TP03_0746 DNA-directed RNA polymerase III subunit; K03021 ... 166 4e-41 bbo:BBOV_III000960 17.m07112; DNA-directed RNA polymerase, bet... 164 2e-40 pfa:PFL0330c DNA-directed RNA polymerase III subunit, putative... 160 4e-39 cpv:cgd8_170 DNA-directed RNA polymerase beta subunit ; K03021... 159 5e-39 hsa:55703 POLR3B, C128, DKFZp686B10117, FLJ10388, RPC2; polyme... 159 5e-39 mmu:70428 Polr3b, 2700078H01Rik, A330032P03Rik, C85372, RPC2; ... 159 5e-39 pfa:PFB0715w DNA-directed RNA polymerase II second largest sub... 157 2e-38 dre:562329 polr3b, si:dkey-103i16.3, wu:fc20h06; polymerase (R... 157 2e-38 sce:YOR207C RET1, PDS2, RPC128, RPC2; C128 (EC:2.7.7.6); K0302... 155 1e-37 cel:F09F7.3 hypothetical protein; K03021 DNA-directed RNA poly... 155 1e-37 ath:AT4G21710 NRPB2; NRPB2; DNA binding / DNA-directed RNA pol... 154 2e-37 tgo:TGME49_072740 DNA-directed RNA polymerase III subunit, put... 152 8e-37 hsa:5431 POLR2B, POL2RB, RPB2, hRPB140, hsRPB2; polymerase (RN... 149 8e-36 mmu:231329 Polr2b, MGC47046, Pol2rb, Rpb140, Rpb2; polymerase ... 149 9e-36 tpv:TP04_0340 DNA-directed RNA polymerase II subunit (EC:2.7.7... 148 1e-35 ath:AT5G45140 NRPC2; NRPC2; DNA binding / DNA-directed RNA pol... 148 1e-35 dre:100149268 polr2b, zgc:109952; polymerase (RNA) II (DNA dir... 147 3e-35 cel:C26E6.4 rpb-2; RNA Polymerase II (B) subunit family member... 146 6e-35 bbo:BBOV_II002050 18.m06162; DNA-directed RNA polymerase, beta... 146 6e-35 cpv:cgd7_3720 RNA polymerase beta subunit ; K03010 DNA-directe... 145 8e-35 tgo:TGME49_058210 DNA-directed RNA polymerase II subunit RPB2,... 143 3e-34 sce:YOR151C RPB2, RPB150, RPO22, SIT2, SOH2; B150 (EC:2.7.7.6)... 143 4e-34 ath:AT3G23780 NRPD2A; NRPD2A; DNA binding / DNA-directed RNA p... 125 1e-28 ath:AT3G18090 NRPD2B; NRPD2b; DNA binding / DNA-directed RNA p... 121 2e-27 eco:b3987 rpoB, ECK3978, ftsR, groN, JW3950, mbrD?, nitB, rif,... 90.1 4e-18 ath:ArthCp014 rpoB; RNA polymerase beta chain; K03043 DNA-dire... 86.7 5e-17 tgo:TGME49_100670 hypothetical protein 63.9 3e-10 bbo:BBOV_V000130 RNA polymerase beta subunit; K03043 DNA-direc... 49.3 1e-05 tpv:TP05_0028 DNA-directed RNA polymerase subunit beta (EC:2.7... 47.4 3e-05 bbo:BBOV_II005840 18.m06484; hypothetical protein 37.4 0.031 mmu:17952 Naip6, Birc1f, Naip-rs4, Naip-rs4A; NLR family, apop... 31.2 2.6 > tgo:TGME49_097530 DNA-directed RNA polymerase I subunit RPA2, putative (EC:2.7.7.6); K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1388 Score = 345 bits (885), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 162/197 (82%), Positives = 179/197 (90%), Gaps = 1/197 (0%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R VRKP+IGDKFASRHGQKGILSMLWPHEDMPF+ESG+VPDILFNPHGFPSRMTIGMLIE Sbjct 1062 RCVRKPVIGDKFASRHGQKGILSMLWPHEDMPFTESGLVPDILFNPHGFPSRMTIGMLIE 1121 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGA-RWIDQEGHHGYVLRGGRYRTPEEEVKAQE 119 SMAGKAAAVHGA+QDAT FREF Q G +W+DQ G+HG+V RG RYRTPEEE +AQ+ Sbjct 1122 SMAGKAAAVHGAYQDATPFREFPPQSADGKNKWVDQGGYHGWVKRGERYRTPEEERQAQD 1181 Query 120 QGDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVR 179 + +TPVDYFGKAL+ +GYQYYG EELYSGVYG+PLT HIFTGLIYYQRLRHMVTDK QVR Sbjct 1182 EPETPVDYFGKALMRAGYQYYGTEELYSGVYGVPLTAHIFTGLIYYQRLRHMVTDKHQVR 1241 Query 180 ATGPIDSLTHQPVKGRK 196 ATGP+D+LTHQPVKGRK Sbjct 1242 ATGPVDALTHQPVKGRK 1258 > bbo:BBOV_II001980 18.m06155; DNA-directed RNA polymerase, beta subunit; K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1283 Score = 281 bits (718), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 131/196 (66%), Positives = 152/196 (77%), Gaps = 2/196 (1%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R VR PI+GDKFASRHGQKGILSM WP E+MPF ESGI+PDI+FNPHG PSRMTIG LIE Sbjct 982 RIVRNPIVGDKFASRHGQKGILSMAWPAENMPFLESGIIPDIIFNPHGLPSRMTIGKLIE 1041 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 MAGK+AA+HGAFQDAT FR++ KQ TG +WID G G+ RG RY + EEE+ E Sbjct 1042 CMAGKSAAIHGAFQDATCFRKYPKQMATGNKWIDHGGLKGWEERGFRYMSKEEELSKTE- 1100 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 D +DYFGK LL +GY YYG E +Y G G + HIF G I+YQRLRHMV+DKAQVRA Sbjct 1101 -DDVIDYFGKTLLQAGYDYYGTESMYCGSLGTEIRTHIFIGCIFYQRLRHMVSDKAQVRA 1159 Query 181 TGPIDSLTHQPVKGRK 196 TGP+D++T QPVKGRK Sbjct 1160 TGPVDAITKQPVKGRK 1175 > cpv:cgd1_2770 RNA polymerase 1 beta subunit ; K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1281 Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 126/197 (63%), Positives = 143/197 (72%), Gaps = 21/197 (10%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R VR P++GDKFASRHGQKGILSMLWP E+MPFSESG+VPDILFNPHGFPSRMTIGML+E Sbjct 988 RIVRNPMVGDKFASRHGQKGILSMLWPQENMPFSESGMVPDILFNPHGFPSRMTIGMLLE 1047 Query 61 SMAGKAAAVHGAFQ-DATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQE 119 SM GKAA +HGA DAT F + + R E+ KA E Sbjct 1048 SMGGKAACIHGARSLDATPFNINISDDLS------------------RSEENCEDDKAGE 1089 Query 120 QGDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVR 179 + T VDYFGKAL +G+QYYG E LY+G+ G+ L CHIF G+IYYQRLRHMV DKAQVR Sbjct 1090 K--TTVDYFGKALERAGFQYYGCEPLYNGMTGVELPCHIFMGVIYYQRLRHMVADKAQVR 1147 Query 180 ATGPIDSLTHQPVKGRK 196 ATGPID+LT QPVKGRK Sbjct 1148 ATGPIDALTRQPVKGRK 1164 > tpv:TP04_0334 DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1235 Score = 240 bits (612), Expect = 2e-63, Method: Composition-based stats. Identities = 111/196 (56%), Positives = 136/196 (69%), Gaps = 25/196 (12%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R +R PI+GDKFASRHGQKGILS +WP EDMPF E+GIVPD++FNPHG PSRMTIG LIE Sbjct 957 RVLRSPIVGDKFASRHGQKGILSAVWPTEDMPFLENGIVPDVIFNPHGLPSRMTIGKLIE 1016 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 MAGK A+++G QD+T F+ + + PE + E+ Sbjct 1017 GMAGKVASIYGKPQDSTCFQAYYSE------------------------NPENGDEEMEE 1052 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 D VDYFGK+L+ SGY+YYG E +Y G G + HIF GLIYYQRLRHMV+DKAQVR+ Sbjct 1053 VDV-VDYFGKSLIKSGYEYYGTESMYCGTLGTEIQTHIFVGLIYYQRLRHMVSDKAQVRS 1111 Query 181 TGPIDSLTHQPVKGRK 196 TGP+D++T QPVKGRK Sbjct 1112 TGPVDTITKQPVKGRK 1127 > pfa:PF11_0358 DNA-directed RNA polymerase 1, subunit 2, putative; K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1517 Score = 238 bits (607), Expect = 1e-62, Method: Composition-based stats. Identities = 119/247 (48%), Positives = 149/247 (60%), Gaps = 51/247 (20%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 RS R+P +GDKFASRHGQKG++S L+P EDMPF+ESGIVPDI+FNPHG PSRMTIGMLIE Sbjct 1153 RSTRQPQVGDKFASRHGQKGVVSRLFPQEDMPFAESGIVPDIIFNPHGIPSRMTIGMLIE 1212 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTP--------- 111 S+ GKAA+++G DAT FR++ +Q+ WID G G++ + ++ Sbjct 1213 SICGKAASLYGKRIDATPFRKYTQQKSFNNPWIDNCGIKGFLEKNDTIKSDLDTCQKEKD 1272 Query 112 -----------------------------------------EEEVK-AQEQGDTPVDYFG 129 +EE K A D +DYF Sbjct 1273 KNKNINNNNNNKIKENKYNNSNDSNASIDSDDNTNNCNDKRDEEEKKANITYDEKIDYFA 1332 Query 130 KALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRATGPIDSLTH 189 K LL GY YYG E LYSG+YG+PL HIF G+IYYQRLRHM DKAQVR TGP+ +LTH Sbjct 1333 KLLLNKGYDYYGTELLYSGIYGVPLQAHIFIGVIYYQRLRHMAYDKAQVRRTGPVCNLTH 1392 Query 190 QPVKGRK 196 QP+KG++ Sbjct 1393 QPLKGKR 1399 > mmu:20017 Polr1b, 128kDa, D630020H17Rik, RPA116, RPA135, RPA2, Rpo1-2; polymerase (RNA) I polypeptide B (EC:2.7.7.6); K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1135 Score = 218 bits (554), Expect = 2e-56, Method: Composition-based stats. Identities = 107/195 (54%), Positives = 129/195 (66%), Gaps = 37/195 (18%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R R P IGDKFASRHGQKGILS LWP EDMPF+ESG++PDILFNPHGFPSRMTIGMLIE Sbjct 872 RIPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIE 931 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 SMAGK+AA+HG DAT F + ++E Sbjct 932 SMAGKSAALHGLCHDATPF-----------------------------------IFSEE- 955 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 ++ ++YFG+ L A+GY +YG E LYSG+ GM L IF G++YYQRLRHMV+DK QVR Sbjct 956 -NSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRT 1014 Query 181 TGPIDSLTHQPVKGR 195 TG D +T+QP+ GR Sbjct 1015 TGARDKVTNQPLGGR 1029 > cel:F14B4.3 hypothetical protein; K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1127 Score = 213 bits (542), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 107/196 (54%), Positives = 125/196 (63%), Gaps = 37/196 (18%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R R PIIGDKFASRHGQKGI S LWP E +PFSE+G+VPDI+FNPHGFPSRMTIGM+IE Sbjct 846 RIERNPIIGDKFASRHGQKGINSFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIE 905 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 SMAGKAAA HG DA+ F + Sbjct 906 SMAGKAAATHGENYDASPF-------------------------------------VFNE 928 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 +T +++FG+ L +GY YYG E YSGV G + IF G++YYQRLRHM+ DK QVRA Sbjct 929 DNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVRA 988 Query 181 TGPIDSLTHQPVKGRK 196 TGPID +THQPVKGRK Sbjct 989 TGPIDPITHQPVKGRK 1004 > xla:379695 polr1b, MGC68946; polymerase (RNA) I polypeptide B, 128kDa; K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1134 Score = 212 bits (539), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 112/196 (57%), Positives = 126/196 (64%), Gaps = 37/196 (18%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R R P IGDKFASRHGQKGILS LWP EDMPF+ESG+VPDILFNPHGFPSRMTIGMLIE Sbjct 871 RIPRNPTIGDKFASRHGQKGILSRLWPSEDMPFTESGMVPDILFNPHGFPSRMTIGMLIE 930 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 SMAGK+AA+HG DAT F T EE A E Sbjct 931 SMAGKSAALHGLCHDATPF------------------------------TFSEENSALE- 959 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 YFG+ L A GY +YG E+LYSG+ G+ L IF G++YYQRLRHMV+DK QVR Sbjct 960 ------YFGEMLRAGGYNFYGTEKLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRT 1013 Query 181 TGPIDSLTHQPVKGRK 196 TG D +T+QPV GR Sbjct 1014 TGARDKVTNQPVGGRN 1029 > hsa:84172 POLR1B, FLJ10816, FLJ21921, MGC131780, RPA135, RPA2, Rpo1-2; polymerase (RNA) I polypeptide B, 128kDa (EC:2.7.7.6); K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1079 Score = 210 bits (534), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 107/196 (54%), Positives = 129/196 (65%), Gaps = 37/196 (18%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R R P IGDKFASRHGQKGILS LWP EDMPF+ESG+VPDILFNPHGFPSRMTIGMLIE Sbjct 816 RVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIE 875 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 SMAGK+AA+HG DAT F + ++E Sbjct 876 SMAGKSAALHGLCHDATPF-----------------------------------IFSEE- 899 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 ++ ++YFG+ L A+GY +YG E LYSG+ G+ L IF G++YYQRLRHMV+DK QVR Sbjct 900 -NSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRT 958 Query 181 TGPIDSLTHQPVKGRK 196 TG D +T+QP+ GR Sbjct 959 TGARDRVTNQPIGGRN 974 > dre:325603 polr1b, MGC113960, MGC158198, MGC192771, MGC66298, wu:fc91a05, zgc:66298; polymerase (RNA) I polypeptide B (EC:2.7.7.6); K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1132 Score = 205 bits (522), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 107/196 (54%), Positives = 127/196 (64%), Gaps = 37/196 (18%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R R P IGDKFASRHGQKGILS LWP EDMPF+ESG+ PDILFNPHGFPSRMTIGMLIE Sbjct 869 RVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMSPDILFNPHGFPSRMTIGMLIE 928 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 SMAGK+A++HG DAT F T EE Sbjct 929 SMAGKSASLHGLCHDATPF------------------------------TFSEE------ 952 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 ++ +++FG+ L A+GY YYG E LYSG+ G+ L IF G++YYQRLRHMV+DK QVR Sbjct 953 -NSALEHFGELLKAAGYNYYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRT 1011 Query 181 TGPIDSLTHQPVKGRK 196 TG D +T+QP+ GR Sbjct 1012 TGARDKVTNQPMGGRN 1027 > sce:YPR010C RPA135, RPA2, RRN2, SRP3; A135 (EC:2.7.7.6); K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1203 Score = 201 bits (512), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 103/196 (52%), Positives = 121/196 (61%), Gaps = 37/196 (18%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R R P IGDKF+SRHGQKG+ S WP DMPFSE+GI PDI+ NPH FPSRMTIGM +E Sbjct 906 RIRRTPQIGDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVE 965 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 S+AGKA A+HG QD+T WI E Sbjct 966 SLAGKAGALHGIAQDSTP-------------WIFNE------------------------ 988 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 DTP DYFG+ L +GY Y+G E +YSG G L I+ G++YYQRLRHMV DK QVR+ Sbjct 989 DDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYYQRLRHMVNDKFQVRS 1048 Query 181 TGPIDSLTHQPVKGRK 196 TGP++SLT QPVKGRK Sbjct 1049 TGPVNSLTMQPVKGRK 1064 > ath:AT1G29940 NRPA2; NRPA2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding; K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1178 Score = 195 bits (496), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 102/197 (51%), Positives = 123/197 (62%), Gaps = 28/197 (14%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFS-ESGIVPDILFNPHGFPSRMTIGMLI 59 R R PIIGDKF+SRHGQKG+ S LWP DMPF+ +G+ PD++ NPH FPSRMTI ML+ Sbjct 888 RHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLL 947 Query 60 ESMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQE 119 ES+A K ++HG F DAT FR+ K KT EEE K+ Sbjct 948 ESIAAKGGSLHGKFVDATPFRDAVK--KTNG---------------------EEESKSS- 983 Query 120 QGDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVR 179 VD G L G+ +YG E LYSG G+ L C IF G +YYQRLRHMV+DK QVR Sbjct 984 ---LLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVR 1040 Query 180 ATGPIDSLTHQPVKGRK 196 +TG +D LTHQP+KGRK Sbjct 1041 STGQVDQLTHQPIKGRK 1057 > tpv:TP03_0746 DNA-directed RNA polymerase III subunit; K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1244 Score = 166 bits (420), Expect = 4e-41, Method: Composition-based stats. Identities = 83/195 (42%), Positives = 106/195 (54%), Gaps = 26/195 (13%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R R P IGDKF+SRHGQKG++ ++ HEDMPF+ESGIVPD++ NPHGFPSRMT+G L+E Sbjct 985 RQSRPPEIGDKFSSRHGQKGVVGLIAEHEDMPFTESGIVPDLIMNPHGFPSRMTVGKLLE 1044 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 +A K++ G F D+T F Sbjct 1045 LVASKSSVFSGNFVDSTPFSNSYSDNLCN--------------------------DLNNS 1078 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 G + L+ +G+ GKE LYSG+ G P+ IF G IYYQRL+HMVTDK R Sbjct 1079 GSNKMSDICDILIKNGFHPKGKEILYSGISGNPINTLIFIGPIYYQRLKHMVTDKIHARG 1138 Query 181 TGPIDSLTHQPVKGR 195 GP +T QP +GR Sbjct 1139 RGPRQPITRQPTEGR 1153 > bbo:BBOV_III000960 17.m07112; DNA-directed RNA polymerase, beta subunit; K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1171 Score = 164 bits (415), Expect = 2e-40, Method: Composition-based stats. Identities = 83/195 (42%), Positives = 110/195 (56%), Gaps = 41/195 (21%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R VR P IGDK++SRHGQKG++ ++ E++PFSE G VPD++ NPHGFPSRMT+G ++E Sbjct 923 RQVRLPEIGDKYSSRHGQKGVVGLIESQENLPFSEHGWVPDLIMNPHGFPSRMTVGKMLE 982 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 +A KAA ++G F+D T F E Sbjct 983 LVAAKAAVLNGIFEDGTPF---------------------------------------EA 1003 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 P ++L+ G+ GKE LYSG+ G PL IFTG +YYQ+L+HMV+DK RA Sbjct 1004 DSLPA--IERSLIKKGFHPAGKEILYSGITGEPLETLIFTGPMYYQKLKHMVSDKIHARA 1061 Query 181 TGPIDSLTHQPVKGR 195 GP SLT QP +GR Sbjct 1062 VGPRQSLTRQPTEGR 1076 > pfa:PFL0330c DNA-directed RNA polymerase III subunit, putative (EC:2.7.7.6); K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1450 Score = 160 bits (404), Expect = 4e-39, Method: Composition-based stats. Identities = 84/195 (43%), Positives = 108/195 (55%), Gaps = 41/195 (21%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R R P +GDKF+SRHGQKG++ +L EDMPF+ESGI PD++ NPHGFPSRMT+G L+E Sbjct 1205 RQTRLPELGDKFSSRHGQKGVVGLLVNQEDMPFTESGICPDLIMNPHGFPSRMTVGKLLE 1264 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 +A KAA + G ++ +G + G TP EE+ Sbjct 1265 LVASKAAVMDGEYK------------------------YGSIFSG----TPFEEI----- 1291 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 + L G+ KE LYSG+ G PL +IF G IYYQ+L+HMV DK RA Sbjct 1292 --------AEILFRYGFNCSSKELLYSGLTGEPLETYIFMGPIYYQKLKHMVQDKIHARA 1343 Query 181 TGPIDSLTHQPVKGR 195 GP LT QP +GR Sbjct 1344 RGPRQLLTRQPTEGR 1358 > cpv:cgd8_170 DNA-directed RNA polymerase beta subunit ; K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1287 Score = 159 bits (403), Expect = 5e-39, Method: Composition-based stats. Identities = 78/195 (40%), Positives = 106/195 (54%), Gaps = 41/195 (21%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R R+P +GDKF+SRHGQKG++ ++ ED+PFSE+G PD++ NPHGFPSRMT+G L+E Sbjct 1042 RQTRRPELGDKFSSRHGQKGVVGLIISQEDLPFSETGWCPDLIMNPHGFPSRMTVGKLLE 1101 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 ++ KA+ + G ++ TAF Sbjct 1102 LISSKASVLDGNYRYGTAF----------------------------------------- 1120 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 G TP++ K L+ G+ Y GKE L SG G + +IF G IYYQ+L+HMV DK R Sbjct 1121 GGTPLEESAKCLVEHGFHYSGKEYLTSGTTGEAIEAYIFVGPIYYQKLKHMVLDKMHARG 1180 Query 181 TGPIDSLTHQPVKGR 195 GP LT QP +GR Sbjct 1181 RGPRQILTRQPTEGR 1195 > hsa:55703 POLR3B, C128, DKFZp686B10117, FLJ10388, RPC2; polymerase (RNA) III (DNA directed) polypeptide B (EC:2.7.7.6); K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1075 Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 84/195 (43%), Positives = 106/195 (54%), Gaps = 41/195 (21%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R R+P IGDKF+SRHGQKG+ ++ P EDMPF +SGI PDI+ NPHGFPSRMT+G LIE Sbjct 828 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE 887 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 +AGKA + G F TAF Sbjct 888 LLAGKAGVLDGRFHYGTAF----------------------------------------- 906 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 G + V + L+ GY Y GK+ + SG+ G PL +I+ G +YYQ+L+HMV DK RA Sbjct 907 GGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARA 966 Query 181 TGPIDSLTHQPVKGR 195 GP LT QP +GR Sbjct 967 RGPRAVLTRQPTEGR 981 > mmu:70428 Polr3b, 2700078H01Rik, A330032P03Rik, C85372, RPC2; polymerase (RNA) III (DNA directed) polypeptide B (EC:2.7.7.6); K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1133 Score = 159 bits (402), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 84/195 (43%), Positives = 106/195 (54%), Gaps = 41/195 (21%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R R+P IGDKF+SRHGQKG+ ++ P EDMPF +SGI PDI+ NPHGFPSRMT+G LIE Sbjct 886 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRMTVGKLIE 945 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 +AGKA + G F TAF Sbjct 946 LLAGKAGVLDGRFHYGTAF----------------------------------------- 964 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 G + V + L+ GY Y GK+ + SG+ G PL +I+ G +YYQ+L+HMV DK RA Sbjct 965 GGSKVKDVCEDLVRHGYNYLGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARA 1024 Query 181 TGPIDSLTHQPVKGR 195 GP LT QP +GR Sbjct 1025 RGPRAVLTRQPTEGR 1039 > pfa:PFB0715w DNA-directed RNA polymerase II second largest subunit, putative; K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1340 Score = 157 bits (398), Expect = 2e-38, Method: Composition-based stats. Identities = 86/195 (44%), Positives = 103/195 (52%), Gaps = 41/195 (21%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 RSVR P IGDKFASRHGQKG + + + EDMPFS GI PDI+ NPH PSRMTIG L+E Sbjct 1089 RSVRIPQIGDKFASRHGQKGTIGITYRTEDMPFSSLGIFPDIIMNPHAVPSRMTIGHLVE 1148 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 + GK AA+ G DAT F + QE I Q+ H+ Sbjct 1149 CLTGKVAAIEGGEGDATPFSKITVQE------ISQKLHN--------------------- 1181 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 GY+ YG E LY+G G L IF G YYQRL+HMV DK R+ Sbjct 1182 --------------LGYEKYGNEMLYNGHNGRMLKSKIFIGPTYYQRLKHMVEDKIHARS 1227 Query 181 TGPIDSLTHQPVKGR 195 GP+ +T QP +GR Sbjct 1228 RGPLTMITRQPTEGR 1242 > dre:562329 polr3b, si:dkey-103i16.3, wu:fc20h06; polymerase (RNA) III (DNA directed) polypeptide B; K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1140 Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 83/195 (42%), Positives = 106/195 (54%), Gaps = 41/195 (21%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R R+P IGDKF+SRHGQKG+ ++ P EDMPF +SGI PDI+ NPHG+PSRMT+G LIE Sbjct 883 RQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGYPSRMTVGKLIE 942 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 +AGKA + G F TAF Sbjct 943 LLAGKAGVLDGRFHYGTAF----------------------------------------- 961 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 G + V + L+ GY Y GK+ + SG+ G PL +I+ G +YYQ+L+HMV DK RA Sbjct 962 GGSKVKDVCEDLIRYGYNYQGKDYVTSGITGEPLEAYIYFGPVYYQKLKHMVLDKMHARA 1021 Query 181 TGPIDSLTHQPVKGR 195 GP LT QP +GR Sbjct 1022 RGPRAVLTRQPTEGR 1036 > sce:YOR207C RET1, PDS2, RPC128, RPC2; C128 (EC:2.7.7.6); K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1149 Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 80/195 (41%), Positives = 107/195 (54%), Gaps = 41/195 (21%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R R+P +GDKF+SRHGQKG+ ++ EDMPF++ GIVPDI+ NPHGFPSRMT+G +IE Sbjct 901 RQNRRPELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIE 960 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 ++GKA ++G + T F Sbjct 961 LISGKAGVLNGTLEYGTCF----------------------------------------- 979 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 G + ++ K L+ G+ Y GK+ LYSG+ G L +IF G IYYQ+L+HMV DK RA Sbjct 980 GGSKLEDMSKILVDQGFNYSGKDMLYSGITGECLQAYIFFGPIYYQKLKHMVLDKMHARA 1039 Query 181 TGPIDSLTHQPVKGR 195 GP LT QP +GR Sbjct 1040 RGPRAVLTRQPTEGR 1054 > cel:F09F7.3 hypothetical protein; K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1154 Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 80/195 (41%), Positives = 108/195 (55%), Gaps = 41/195 (21%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R R+P +GDKF+SRHGQKG+ ++ EDMPF++ G+VPD++ NPHG+PSRMT+G L+E Sbjct 907 RQTRRPELGDKFSSRHGQKGVCGLIAQQEDMPFNDLGMVPDMIMNPHGYPSRMTVGKLME 966 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 ++GKA V+G + TAF Sbjct 967 LLSGKAGVVNGTYHYGTAF----------------------------------------- 985 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 G V + L A GY Y GK+ L SG+ G PL+ +I+ G IYYQ+L+HMV DK RA Sbjct 986 GGDQVKDVCEELAACGYNYMGKDMLTSGITGQPLSAYIYFGPIYYQKLKHMVLDKMHARA 1045 Query 181 TGPIDSLTHQPVKGR 195 GP +LT QP +GR Sbjct 1046 RGPRAALTRQPTEGR 1060 > ath:AT4G21710 NRPB2; NRPB2; DNA binding / DNA-directed RNA polymerase; K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1188 Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/195 (44%), Positives = 100/195 (51%), Gaps = 41/195 (21%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 RSVR P IGDKF+SRHGQKG + M + EDMP++ G+ PDI+ NPH PSRMTIG LIE Sbjct 930 RSVRIPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEGVTPDIIVNPHAIPSRMTIGQLIE 989 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 + GK AA G DAT F Sbjct 990 CIMGKVAAHMGKEGDATPF----------------------------------------- 1008 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 D VD KAL GYQ G E +Y+G G PLT IF G YYQRL+HMV DK R Sbjct 1009 TDVTVDNISKALHKCGYQMRGFERMYNGHTGRPLTAMIFLGPTYYQRLKHMVDDKIHSRG 1068 Query 181 TGPIDSLTHQPVKGR 195 GP+ LT QP +GR Sbjct 1069 RGPVQILTRQPAEGR 1083 > tgo:TGME49_072740 DNA-directed RNA polymerase III subunit, putative (EC:2.7.7.6); K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1332 Score = 152 bits (384), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 82/195 (42%), Positives = 106/195 (54%), Gaps = 41/195 (21%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R R P +GDKF+SRHGQKG++ ++ P ED+PF+ESG PD++ NPHGFPSRMT+G ++E Sbjct 1087 RQTRLPELGDKFSSRHGQKGVVGLIAPAEDLPFAESGWCPDLIMNPHGFPSRMTVGKMME 1146 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 +AGK+A GA Q TAF Sbjct 1147 LIAGKSALQVGACQYGTAF----------------------------------------- 1165 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 G V+ G+ L A G+ Y GKE L SG+ G L ++F G IYYQ+L+HMV DK R Sbjct 1166 GGVGVETLGEILAAHGFHYSGKEYLTSGITGEALQTYVFAGPIYYQKLKHMVQDKIHARG 1225 Query 181 TGPIDSLTHQPVKGR 195 GP LT QP +GR Sbjct 1226 RGPRQLLTRQPTEGR 1240 > hsa:5431 POLR2B, POL2RB, RPB2, hRPB140, hsRPB2; polymerase (RNA) II (DNA directed) polypeptide B, 140kDa (EC:2.7.7.6); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1174 Score = 149 bits (375), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 85/195 (43%), Positives = 99/195 (50%), Gaps = 40/195 (20%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 RSVR P IGDKFASRHGQKG + + EDMPF+ GI PDI+ NPH PSRMTIG LIE Sbjct 924 RSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIE 983 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 + GK +A G DAT F + V Q+ Sbjct 984 CLQGKVSANKGEIGDATPF--------------------------------NDAVNVQKI 1011 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 + DY GY G E LY+G G +T IF G YYQRL+HMV DK RA Sbjct 1012 SNLLSDY--------GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063 Query 181 TGPIDSLTHQPVKGR 195 GPI L QP++GR Sbjct 1064 RGPIQILNRQPMEGR 1078 > mmu:231329 Polr2b, MGC47046, Pol2rb, Rpb140, Rpb2; polymerase (RNA) II (DNA directed) polypeptide B (EC:2.7.7.6); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1174 Score = 149 bits (375), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 85/195 (43%), Positives = 99/195 (50%), Gaps = 40/195 (20%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 RSVR P IGDKFASRHGQKG + + EDMPF+ GI PDI+ NPH PSRMTIG LIE Sbjct 924 RSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIE 983 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 + GK +A G DAT F + V Q+ Sbjct 984 CLQGKVSANKGEIGDATPF--------------------------------NDAVNVQKI 1011 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 + DY GY G E LY+G G +T IF G YYQRL+HMV DK RA Sbjct 1012 SNLLSDY--------GYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDKIHSRA 1063 Query 181 TGPIDSLTHQPVKGR 195 GPI L QP++GR Sbjct 1064 RGPIQILNRQPMEGR 1078 > tpv:TP04_0340 DNA-directed RNA polymerase II subunit (EC:2.7.7.6); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1190 Score = 148 bits (373), Expect = 1e-35, Method: Composition-based stats. Identities = 79/195 (40%), Positives = 96/195 (49%), Gaps = 41/195 (21%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 RS+R P IGDKFASRHGQKG + M + ED+PF+ GIVPDI+ NPH PSRMTIG LIE Sbjct 939 RSIRVPQIGDKFASRHGQKGTIGMTFRMEDLPFTCDGIVPDIIMNPHAVPSRMTIGHLIE 998 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 + GK ++ G DAT F + Sbjct 999 CLLGKVGSLVGMEGDATPFSKM-------------------------------------- 1020 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 +D L Y YG E ++G G + IF G YYQRL+HMV DK RA Sbjct 1021 ---TLDQISNRLFKCRYSRYGNEAFHNGFTGNLMASKIFVGPTYYQRLKHMVEDKIHARA 1077 Query 181 TGPIDSLTHQPVKGR 195 GP+ LT QP +GR Sbjct 1078 RGPVTMLTRQPTEGR 1092 > ath:AT5G45140 NRPC2; NRPC2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding; K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1161 Score = 148 bits (373), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 78/195 (40%), Positives = 104/195 (53%), Gaps = 36/195 (18%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R R+P +GDKF+SRHGQKG+ ++ ED PFSE GI PD++ NPHGFPSRMT+G +IE Sbjct 905 RHTRRPELGDKFSSRHGQKGVCGIIIQQEDFPFSELGICPDLIMNPHGFPSRMTVGKMIE 964 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 + KA G F +AF E + GH Sbjct 965 LLGSKAGVSCGRFHYGSAFGE-------------RSGHAD-------------------- 991 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 V+ L+ G+ Y GK+ LYSG+ G P+ +IF G IYYQ+L+HMV DK R Sbjct 992 ---KVETISATLVEKGFSYSGKDLLYSGISGEPVEAYIFMGPIYYQKLKHMVLDKMHARG 1048 Query 181 TGPIDSLTHQPVKGR 195 +GP +T QP +G+ Sbjct 1049 SGPRVMMTRQPTEGK 1063 > dre:100149268 polr2b, zgc:109952; polymerase (RNA) II (DNA directed) polypeptide B (EC:2.7.7.6); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1174 Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 83/195 (42%), Positives = 99/195 (50%), Gaps = 40/195 (20%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 RSVR P IGDKFASRHGQKG + + EDMPF+ GI PDI+ NPH PSRMT+G LIE Sbjct 924 RSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTVGHLIE 983 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 + GK +A G DAT F + V Q+ Sbjct 984 CLQGKVSANKGEIGDATPF--------------------------------NDAVNVQKV 1011 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 + +Y GY G E LY+G G LT IF G YYQRL+HMV DK RA Sbjct 1012 SNLLSEY--------GYHLRGNEVLYNGFTGRKLTSQIFVGPTYYQRLKHMVDDKIHSRA 1063 Query 181 TGPIDSLTHQPVKGR 195 GP+ L QP++GR Sbjct 1064 RGPVQILNRQPMEGR 1078 > cel:C26E6.4 rpb-2; RNA Polymerase II (B) subunit family member (rpb-2); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1193 Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 81/195 (41%), Positives = 98/195 (50%), Gaps = 40/195 (20%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 RSVR P IGDKFASRHGQKG + +++ EDMPF+ G+ PDI+ NPH PSRMTIG LIE Sbjct 930 RSVRLPQIGDKFASRHGQKGTMGIMYRQEDMPFTAEGLTPDIIINPHAVPSRMTIGHLIE 989 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 + GK +A G DAT F + +K Sbjct 990 CLQGKLSANKGEIGDATPFNDTVNVQKISG------------------------------ 1019 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 L GY G E +Y+G G LT IF G YYQRL+HMV DK RA Sbjct 1020 ----------LLCEYGYHLRGNEVMYNGHTGKKLTTQIFFGPTYYQRLKHMVDDKIHSRA 1069 Query 181 TGPIDSLTHQPVKGR 195 GPI + QP++GR Sbjct 1070 RGPIQMMNRQPMEGR 1084 > bbo:BBOV_II002050 18.m06162; DNA-directed RNA polymerase, beta subunit family protein (EC:2.7.7.6); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1207 Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 80/195 (41%), Positives = 97/195 (49%), Gaps = 41/195 (21%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 RS+R P IGDKFASRHGQKG + M + ED+PF+ GIVPDI+ NPH PSRMTIG L+E Sbjct 956 RSIRVPQIGDKFASRHGQKGTIGMTYRTEDLPFTCEGIVPDIIMNPHAVPSRMTIGHLVE 1015 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 + GK A G DAT F + Sbjct 1016 CLVGKVGACCGMEGDATPFSKL-------------------------------------- 1037 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 V + + L GY +G E L+ G G + IF G YYQRL+HMV DK RA Sbjct 1038 ---TVQHVAERLFECGYGKHGNEALHCGFTGEMIVSKIFIGPTYYQRLKHMVEDKIHARA 1094 Query 181 TGPIDSLTHQPVKGR 195 GP+ LT QP +GR Sbjct 1095 RGPVTMLTRQPTEGR 1109 > cpv:cgd7_3720 RNA polymerase beta subunit ; K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1177 Score = 145 bits (366), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 80/195 (41%), Positives = 101/195 (51%), Gaps = 41/195 (21%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R++R P +GDKFASRHGQKG + + + EDMPF++ GI+PDI+ NPH PSRMTIG LIE Sbjct 926 RTIRIPHVGDKFASRHGQKGTIGITYRTEDMPFTQDGIIPDIIMNPHAIPSRMTIGHLIE 985 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 + GKA A+ G DAT F + +E Sbjct 986 CLLGKACAIQGLEGDATPFTKITVEE---------------------------------- 1011 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 L +SG+Q G E +Y+G G L IF G YYQRL+HMV DK RA Sbjct 1012 -------ISSRLHSSGFQKNGNEVMYNGHTGKRLESRIFIGPTYYQRLKHMVDDKIHARA 1064 Query 181 TGPIDSLTHQPVKGR 195 G + LT QP +GR Sbjct 1065 RGAVTMLTRQPREGR 1079 > tgo:TGME49_058210 DNA-directed RNA polymerase II subunit RPB2, putative (EC:2.7.7.6); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1259 Score = 143 bits (361), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 83/195 (42%), Positives = 102/195 (52%), Gaps = 41/195 (21%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 RSVR P GDKFASRHGQKG + + + EDMPF+E GI PD++ NPH PSRMTIG L+E Sbjct 1008 RSVRIPQTGDKFASRHGQKGTIGITYRTEDMPFNEEGITPDLIMNPHAVPSRMTIGHLVE 1067 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 + GK AA+ G DAT F +GY + R Sbjct 1068 CLLGKTAAIFGGEGDATPF-------------------NGYAVLDISNR----------- 1097 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 L + GY+ +G E LY G G L IF G YYQRL+HMV DK RA Sbjct 1098 -----------LHSLGYERFGNERLYHGHTGRHLPSLIFFGPTYYQRLKHMVDDKIHARA 1146 Query 181 TGPIDSLTHQPVKGR 195 GP+ LT QP++G+ Sbjct 1147 RGPVTMLTRQPMEGK 1161 > sce:YOR151C RPB2, RPB150, RPO22, SIT2, SOH2; B150 (EC:2.7.7.6); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1224 Score = 143 bits (361), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 81/195 (41%), Positives = 98/195 (50%), Gaps = 41/195 (21%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R+ + P IGDKFASRHGQKG + + + EDMPF+ GIVPD++ NPH PSRMT+ LIE Sbjct 969 RTTKIPQIGDKFASRHGQKGTIGITYRREDMPFTAEGIVPDLIINPHAIPSRMTVAHLIE 1028 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 + K AA+ G DA+ F Sbjct 1029 CLLSKVAALSGNEGDASPF----------------------------------------- 1047 Query 121 GDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRA 180 D V+ K L GYQ G E +Y+G G L IF G YYQRLRHMV DK RA Sbjct 1048 TDITVEGISKLLREHGYQSRGFEVMYNGHTGKKLMAQIFFGPTYYQRLRHMVDDKIHARA 1107 Query 181 TGPIDSLTHQPVKGR 195 GP+ LT QPV+GR Sbjct 1108 RGPMQVLTRQPVEGR 1122 > ath:AT3G23780 NRPD2A; NRPD2A; DNA binding / DNA-directed RNA polymerase Length=1172 Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 75/197 (38%), Positives = 97/197 (49%), Gaps = 32/197 (16%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R VR P +GDKF+S HGQKG+L L ++ PF+ GIVPDI+ NPH FPSR T G L+E Sbjct 903 RQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLE 962 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 + K A I +EG + R+ TP Sbjct 963 AALSKGIACP----------------------IQKEGSSAAYTKLTRHATP--------- 991 Query 121 GDTP-VDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVR 179 TP V + L +G+ +G E +Y+G G + IF G +YQRL HM DK + R Sbjct 992 FSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSMIFMGPTFYQRLVHMSEDKVKFR 1051 Query 180 ATGPIDSLTHQPVKGRK 196 TGP+ LT QPV RK Sbjct 1052 NTGPVHPLTRQPVADRK 1068 > ath:AT3G18090 NRPD2B; NRPD2b; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding Length=1055 Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 74/197 (37%), Positives = 100/197 (50%), Gaps = 31/197 (15%) Query 1 RSVRKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIE 60 R VR P +GDKF+S HGQKG+L L ++ PF+ GIVPDI+ NPH FPSR T G L+E Sbjct 785 RQVRSPCLGDKFSSMHGQKGVLGYLEEQQNFPFTIQGIVPDIVINPHAFPSRQTPGQLLE 844 Query 61 SMAGKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQ 120 + K A +K+E + A + + R+ TP Sbjct 845 AALSKGIAC-----------PIQKKEGSSAAYT----------KLTRHATP--------- 874 Query 121 GDTP-VDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVR 179 TP V + L +G+ +G E +Y+G G + IF G +YQRL HM +K + R Sbjct 875 FSTPGVTEITEQLHRAGFSRWGNERVYNGRSGEMMRSLIFMGPTFYQRLVHMSENKVKFR 934 Query 180 ATGPIDSLTHQPVKGRK 196 TGP+ LT QPV RK Sbjct 935 NTGPVHPLTRQPVADRK 951 > eco:b3987 rpoB, ECK3978, ftsR, groN, JW3950, mbrD?, nitB, rif, ron, sdgB, stl, stv, tabD, tabG; RNA polymerase, beta subunit (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Length=1342 Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 70/214 (32%), Positives = 97/214 (45%), Gaps = 41/214 (19%) Query 9 GDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIESMAGKAA- 67 GDK A RHG KG++S + P EDMP+ E+G DI+ NP G PSRM IG ++E+ G AA Sbjct 1063 GDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAK 1122 Query 68 -------AVHGAFQDATAFREF----------RKQEKTGARWIDQEGHH-GYVLRGGR-Y 108 A+ Q+ REF +Q+ + + D+E LR G Sbjct 1123 GIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPI 1182 Query 109 RTP------EEEVKA-QEQGDTPVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTG 161 TP E E+K + GD P G+ LY G G + G Sbjct 1183 ATPVFDGAKEAEIKELLKLGDLPTS--------------GQIRLYDGRTGEQFERPVTVG 1228 Query 162 LIYYQRLRHMVTDKAQVRATGPIDSLTHQPVKGR 195 +Y +L H+V DK R+TG +T QP+ G+ Sbjct 1229 YMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK 1262 > ath:ArthCp014 rpoB; RNA polymerase beta chain; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Length=1072 Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 87/192 (45%), Gaps = 26/192 (13%) Query 4 RKPIIGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIESMA 63 R+ +GDK A RHG KGI+S + P +DMP+ + G D++FNP G PSRM +G + E Sbjct 814 REIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNVGQIFECSL 873 Query 64 GKAAAVHGAFQDATAFREFRKQEKTGARWIDQEGHHGYVLRGGRYRTPEEEVKAQEQGDT 123 G A ++ F E +QE + R E +A +Q Sbjct 874 GLAGSLLDRHYRIAPFDERYEQEAS------------------RKLVFSELYEASKQTAN 915 Query 124 PVDYFGKALLASGYQYYGKEELYSGVYGMPLTCHIFTGLIYYQRLRHMVTDKAQVRATGP 183 P + +Y GK ++ G G P + G Y +L H V DK R++G Sbjct 916 PWVF--------EPEYPGKSRIFDGRTGDPFEQPVIIGKPYILKLIHQVDDKIHGRSSGH 967 Query 184 IDSLTHQPVKGR 195 +T QP++GR Sbjct 968 YALVTQQPLRGR 979 > tgo:TGME49_100670 hypothetical protein Length=235 Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 0/60 (0%) Query 8 IGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIESMAGKAA 67 +GDK R+G KGILS + + D+PF ++ PDI+ G PSRM +G L E++ GK + Sbjct 136 VGDKLCGRYGNKGILSYIAENADLPFLQNSFYPDIIVGALGIPSRMNLGQLFEALVGKIS 195 > bbo:BBOV_V000130 RNA polymerase beta subunit; K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Length=971 Score = 49.3 bits (116), Expect = 1e-05, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 0/62 (0%) Query 8 IGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIESMAGKAA 67 +GDK RHG KG +S + + P++ +P+I+ +P G SRM +G IE G Sbjct 743 VGDKLCGRHGNKGTISKIIEIPESPYTSEDKLPNIITSPIGAASRMNVGQFIEGYIGNTC 802 Query 68 AV 69 + Sbjct 803 DI 804 > tpv:TP05_0028 DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Length=1005 Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats. Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 0/57 (0%) Query 8 IGDKFASRHGQKGILSMLWPHEDMPFSESGIVPDILFNPHGFPSRMTIGMLIESMAG 64 IGDK RHG KG++S + + D+P++ G+ P + +P G +R+ +G +E G Sbjct 766 IGDKLCGRHGNKGVVSKIVDNIDLPYTFRGLCPYSITSPIGALARINLGQFLEGSCG 822 Score = 35.8 bits (81), Expect = 0.089, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 0/33 (0%) Query 164 YYQRLRHMVTDKAQVRATGPIDSLTHQPVKGRK 196 Y+ +L H K Q R G SLT QPVKG++ Sbjct 891 YFLKLMHTSKSKFQYRTVGKYSSLTQQPVKGKR 923 > bbo:BBOV_II005840 18.m06484; hypothetical protein Length=1146 Score = 37.4 bits (85), Expect = 0.031, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 5/76 (6%) Query 29 EDMPFSESGIVPDILFNPHGFPSRMTIGMLIESMAGKAAAVHGAFQDATAFREFRKQEKT 88 + M FS +GI+P F GFP R+TIG ++A A + Q ++EF++ E + Sbjct 39 DPMAFS-TGILPH--FQMIGFPHRLTIGGPSYTLA--VALLENNPQRLKHYKEFKRDETS 93 Query 89 GARWIDQEGHHGYVLR 104 +ID E + Y+ R Sbjct 94 WPTYIDNEAAYTYLWR 109 > mmu:17952 Naip6, Birc1f, Naip-rs4, Naip-rs4A; NLR family, apoptosis inhibitory protein 6; K12807 baculoviral IAP repeat-containing protein 1 Length=1403 Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 3/46 (6%) Query 102 VLRGGRYRTPEEEVKAQEQGDTPVDYFG---KALLASGYQYYGKEE 144 +LRGG+ R EEE + + D P G +AL A+G+ + GK + Sbjct 148 MLRGGKARYHEEEARLESFEDWPFYAHGTSPRALSAAGFVFTGKRD 193 Lambda K H 0.321 0.138 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 5737858124 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40