bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_3289_orf2
Length=135
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_009290 40S ribosomal protein S28, putative ; K02979... 98.2 7e-21
cpv:cgd2_2870 40S ribosomal protein S28, no good start Met ; K... 91.3 9e-19
pfa:PF14_0585 40S ribosomal protein S28e, putative; K02979 sma... 86.3 2e-17
tpv:TP03_0428 40S ribosomal protein S28e; K02979 small subunit... 83.2 2e-16
bbo:BBOV_IV002240 21.m02745; 40S ribosomal protein S28; K02979... 81.3 8e-16
sce:YLR264W RPS28B, RPS33B; Rps28bp; K02979 small subunit ribo... 72.0 5e-13
sce:YOR167C RPS28A, RPS33A; Rps28ap; K02979 small subunit ribo... 72.0 5e-13
cel:Y41D4B.5 rps-28; Ribosomal Protein, Small subunit family m... 69.7 3e-12
mmu:54127 Rps28; ribosomal protein S28; K02979 small subunit r... 69.7 3e-12
hsa:6234 RPS28; ribosomal protein S28; K02979 small subunit ri... 69.7 3e-12
xla:447177 rps28p9, MGC116486, MGC85550; ribosomal protein S28... 69.3 3e-12
dre:406307 rps28, wu:fb07a10, wu:fb94f01, zgc:73367; ribosomal... 69.3 3e-12
ath:AT5G03850 40S ribosomal protein S28 (RPS28B); K02979 small... 62.8 3e-10
ath:AT3G10090 40S ribosomal protein S28 (RPS28A) 62.8 3e-10
ath:AT5G64140 RPS28; RPS28 (RIBOSOMAL PROTEIN S28); structural... 61.2 8e-10
hsa:3566 IL4R, CD124, IL4RA; interleukin 4 receptor; K05071 in... 31.6 0.68
ath:AT5G39840 ATP-dependent RNA helicase, mitochondrial, putative 30.8 1.2
hsa:9064 MAP3K6, ASK2, MAPKKK6, MEKK6, MGC125653, MGC20114; mi... 29.6 3.1
mmu:53608 Map3k6, Ask2, MAPKKK6, MEKK6, MGC159280; mitogen-act... 29.3 3.2
ath:AT5G42710 hypothetical protein 28.9 4.3
mmu:73711 Fam125a, 1110012M11Rik, MGC99951; family with sequen... 28.5 6.6
mmu:20650 Sntb2, Snt2; syntrophin, basic 2 28.5
hsa:6645 SNTB2, D16S2531E, EST25263, SNT2B2, SNT3, SNTL; syntr... 28.1 7.8
> tgo:TGME49_009290 40S ribosomal protein S28, putative ; K02979
small subunit ribosomal protein S28e
Length=68
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 49/59 (83%), Positives = 53/59 (89%), Gaps = 0/59 (0%)
Query 19 MDFSKLAKVEKVLGRTGSRGGVQQVRVTFMTEESDLQGRSLIRNVKGPVREGDILVLLQ 77
M+ KLAKVEKVLGRTGSRGGV QVRVTFM +E+DL GRSLIRNVKGPVREGDIL LL+
Sbjct 1 MEQPKLAKVEKVLGRTGSRGGVLQVRVTFMADETDLAGRSLIRNVKGPVREGDILALLE 59
> cpv:cgd2_2870 40S ribosomal protein S28, no good start Met ;
K02979 small subunit ribosomal protein S28e
Length=68
Score = 91.3 bits (225), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/55 (81%), Positives = 50/55 (90%), Gaps = 0/55 (0%)
Query 23 KLAKVEKVLGRTGSRGGVQQVRVTFMTEESDLQGRSLIRNVKGPVREGDILVLLQ 77
KLAKVEK+LGRTGSRGGV QVRV FM+ ES+L GRSLIRNV+GPVREGDIL LL+
Sbjct 5 KLAKVEKILGRTGSRGGVIQVRVQFMSGESELAGRSLIRNVRGPVREGDILALLE 59
> pfa:PF14_0585 40S ribosomal protein S28e, putative; K02979 small
subunit ribosomal protein S28e
Length=67
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 50/59 (84%), Gaps = 1/59 (1%)
Query 19 MDFSKLAKVEKVLGRTGSRGGVQQVRVTFMTEESDLQGRSLIRNVKGPVREGDILVLLQ 77
M+ SKLAKVEKVLGRTGSRGGV QVR FM +S+L GR LIRNVKGPVREGDIL LL+
Sbjct 1 MEKSKLAKVEKVLGRTGSRGGVIQVRAQFMG-DSELAGRFLIRNVKGPVREGDILALLE 58
> tpv:TP03_0428 40S ribosomal protein S28e; K02979 small subunit
ribosomal protein S28e
Length=67
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 49/59 (83%), Gaps = 1/59 (1%)
Query 19 MDFSKLAKVEKVLGRTGSRGGVQQVRVTFMTEESDLQGRSLIRNVKGPVREGDILVLLQ 77
M+ KLAKV KVLGRTG+RGGV QVRV FM ES +GR+LIRNVKGPVREGDIL LL+
Sbjct 1 MEQPKLAKVNKVLGRTGNRGGVTQVRVDFMG-ESGWEGRTLIRNVKGPVREGDILALLE 58
> bbo:BBOV_IV002240 21.m02745; 40S ribosomal protein S28; K02979
small subunit ribosomal protein S28e
Length=67
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 44/59 (74%), Positives = 47/59 (79%), Gaps = 1/59 (1%)
Query 19 MDFSKLAKVEKVLGRTGSRGGVQQVRVTFMTEESDLQGRSLIRNVKGPVREGDILVLLQ 77
M+ KLAKV KVLGRTGSRGGV QVRV FM E +GR LIRNVKGPVREGDIL LL+
Sbjct 1 MEQPKLAKVNKVLGRTGSRGGVTQVRVDFMG-EGGWEGRVLIRNVKGPVREGDILALLE 58
> sce:YLR264W RPS28B, RPS33B; Rps28bp; K02979 small subunit ribosomal
protein S28e
Length=67
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 44/54 (81%), Gaps = 4/54 (7%)
Query 24 LAKVEKVLGRTGSRGGVQQVRVTFMTEESDLQGRSLIRNVKGPVREGDILVLLQ 77
LAKV KVLGRTGSRGGV QVRV F+ + S R+++RNVKGPVRE DILVL++
Sbjct 9 LAKVIKVLGRTGSRGGVTQVRVEFLEDTS----RTIVRNVKGPVRENDILVLME 58
> sce:YOR167C RPS28A, RPS33A; Rps28ap; K02979 small subunit ribosomal
protein S28e
Length=67
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 44/54 (81%), Gaps = 4/54 (7%)
Query 24 LAKVEKVLGRTGSRGGVQQVRVTFMTEESDLQGRSLIRNVKGPVREGDILVLLQ 77
LAKV KVLGRTGSRGGV QVRV F+ + S R+++RNVKGPVRE DILVL++
Sbjct 9 LAKVIKVLGRTGSRGGVTQVRVEFLEDTS----RTIVRNVKGPVRENDILVLME 58
> cel:Y41D4B.5 rps-28; Ribosomal Protein, Small subunit family
member (rps-28); K02979 small subunit ribosomal protein S28e
Length=65
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 46/59 (77%), Gaps = 3/59 (5%)
Query 19 MDFSKLAKVEKVLGRTGSRGGVQQVRVTFMTEESDLQGRSLIRNVKGPVREGDILVLLQ 77
MD LA+V KV+GRTGS+G QVRV F+ ++++ RS+IRNVKGPVREGDIL LL+
Sbjct 1 MDKLTLARVTKVIGRTGSQGQCTQVRVEFINDQNN---RSIIRNVKGPVREGDILTLLE 56
> mmu:54127 Rps28; ribosomal protein S28; K02979 small subunit
ribosomal protein S28e
Length=69
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 43/55 (78%), Gaps = 4/55 (7%)
Query 23 KLAKVEKVLGRTGSRGGVQQVRVTFMTEESDLQGRSLIRNVKGPVREGDILVLLQ 77
KLA+V KVLGRTGS+G QVRV FM + S RS+IRNVKGPVREGD+L LL+
Sbjct 10 KLARVTKVLGRTGSQGQCTQVRVEFMDDTS----RSIIRNVKGPVREGDVLTLLE 60
> hsa:6234 RPS28; ribosomal protein S28; K02979 small subunit
ribosomal protein S28e
Length=69
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 43/55 (78%), Gaps = 4/55 (7%)
Query 23 KLAKVEKVLGRTGSRGGVQQVRVTFMTEESDLQGRSLIRNVKGPVREGDILVLLQ 77
KLA+V KVLGRTGS+G QVRV FM + S RS+IRNVKGPVREGD+L LL+
Sbjct 10 KLARVTKVLGRTGSQGQCTQVRVEFMDDTS----RSIIRNVKGPVREGDVLTLLE 60
> xla:447177 rps28p9, MGC116486, MGC85550; ribosomal protein S28
pseudogene 9; K02979 small subunit ribosomal protein S28e
Length=69
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 42/55 (76%), Gaps = 4/55 (7%)
Query 23 KLAKVEKVLGRTGSRGGVQQVRVTFMTEESDLQGRSLIRNVKGPVREGDILVLLQ 77
KLA+V KVLGRTGS+G QVRV FM D RS+IRNVKGPVREGD+L LL+
Sbjct 10 KLARVTKVLGRTGSQGQCTQVRVEFM----DDSNRSIIRNVKGPVREGDVLTLLE 60
> dre:406307 rps28, wu:fb07a10, wu:fb94f01, zgc:73367; ribosomal
protein S28; K02979 small subunit ribosomal protein S28e
Length=69
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 42/55 (76%), Gaps = 4/55 (7%)
Query 23 KLAKVEKVLGRTGSRGGVQQVRVTFMTEESDLQGRSLIRNVKGPVREGDILVLLQ 77
KLA+V KVLGRTGS+G QVRV FM D RS+IRNVKGPVREGD+L LL+
Sbjct 10 KLARVTKVLGRTGSQGQCTQVRVEFM----DDSNRSIIRNVKGPVREGDVLTLLE 60
> ath:AT5G03850 40S ribosomal protein S28 (RPS28B); K02979 small
subunit ribosomal protein S28e
Length=64
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 41/55 (74%), Gaps = 5/55 (9%)
Query 23 KLAKVEKVLGRTGSRGGVQQVRVTFMTEESDLQGRSLIRNVKGPVREGDILVLLQ 77
K A V KV+GRTGSRG V QVRV F +SD R ++RNVKGPVREGDIL LL+
Sbjct 6 KHAVVVKVMGRTGSRGQVTQVRVKFT--DSD---RYIMRNVKGPVREGDILTLLE 55
> ath:AT3G10090 40S ribosomal protein S28 (RPS28A)
Length=64
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 41/55 (74%), Gaps = 5/55 (9%)
Query 23 KLAKVEKVLGRTGSRGGVQQVRVTFMTEESDLQGRSLIRNVKGPVREGDILVLLQ 77
K A V KV+GRTGSRG V QVRV F +SD R ++RNVKGPVREGDIL LL+
Sbjct 6 KHAVVVKVMGRTGSRGQVTQVRVKFT--DSD---RYIMRNVKGPVREGDILTLLE 55
> ath:AT5G64140 RPS28; RPS28 (RIBOSOMAL PROTEIN S28); structural
constituent of ribosome; K02979 small subunit ribosomal protein
S28e
Length=64
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 41/55 (74%), Gaps = 5/55 (9%)
Query 23 KLAKVEKVLGRTGSRGGVQQVRVTFMTEESDLQGRSLIRNVKGPVREGDILVLLQ 77
K A V KV+GRTGSRG V QVRV F +SD R ++RNVKGPVREGD+L LL+
Sbjct 6 KHAVVVKVMGRTGSRGQVTQVRVKFT--DSD---RFIMRNVKGPVREGDVLTLLE 55
> hsa:3566 IL4R, CD124, IL4RA; interleukin 4 receptor; K05071
interleukin 4 receptor
Length=825
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 0/46 (0%)
Query 57 RSLIRNVKGPVREGDILVLLQRRQLLQRRRRQRGRAAARCCSWTGC 102
+ + P R + +++Q Q Q +R RG+ A+C W C
Sbjct 260 KEWWDQIPNPARSRLVAIIIQDAQGSQWEKRSRGQEPAKCPHWKNC 305
> ath:AT5G39840 ATP-dependent RNA helicase, mitochondrial, putative
Length=776
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Query 54 LQGRSLIRNVKGPVREGDILVLLQRRQLLQRRRRQRGRAAARCCSWTGCRPVGQQRQAVL 113
++ ++L+ +K V+ GD +V RR++ + + RCC G P +RQ
Sbjct 423 VEAKTLLGELKN-VKSGDCVVAFSRREIFEVKMAIEKHTNHRCCVIYGALPPETRRQQAK 481
Query 114 LL 115
L
Sbjct 482 LF 483
> hsa:9064 MAP3K6, ASK2, MAPKKK6, MEKK6, MGC125653, MGC20114;
mitogen-activated protein kinase kinase kinase 6 (EC:2.7.11.25);
K04425 mitogen-activated protein kinase kinase kinase 6
[EC:2.7.11.25]
Length=1288
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query 26 KVEKVLGRTGSRGGVQQVRVTFMTEESDLQGRSLIRNVKGPVREGDILVLLQRRQLLQ 83
+ + LG + S+GG ++ FM E SL+R+V GP+++ + + RQ+LQ
Sbjct 704 NIVRYLG-SASQGGYLKI---FMEEVPGGSLSSLLRSVWGPLKDNESTISFYTRQILQ 757
> mmu:53608 Map3k6, Ask2, MAPKKK6, MEKK6, MGC159280; mitogen-activated
protein kinase kinase kinase 6 (EC:2.7.11.25); K04425
mitogen-activated protein kinase kinase kinase 6 [EC:2.7.11.25]
Length=1291
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query 26 KVEKVLGRTGSRGGVQQVRVTFMTEESDLQGRSLIRNVKGPVREGDILVLLQRRQLLQ 83
+ + LG + S+GG ++ FM E SL+R+V GP+++ + + RQ+LQ
Sbjct 705 NIVRYLG-SASQGGYLKI---FMEEVPGGSLSSLLRSVWGPLKDNESTISFYTRQILQ 758
> ath:AT5G42710 hypothetical protein
Length=807
Score = 28.9 bits (63), Expect = 4.3, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query 32 GRTGSRGGVQQVRVTFMTEESDLQGRSLIRNVKGPVREGDILVLLQRRQLLQRRRRQ 88
GR + G QQ + SD+ +++ + KG + G L LL++RQ +RR+R+
Sbjct 577 GRMFTNGMDQQAPIPKSDGNSDILSKTVYKETKGEIEAG--LPLLEKRQ--ERRKRE 629
> mmu:73711 Fam125a, 1110012M11Rik, MGC99951; family with sequence
similarity 125, member A; K12186 ESCRT-I complex subunit
MVB12
Length=271
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query 2 QTPNPSPKPQTLAP-------NPKMDFSKLAKVEKVLGRTGSRGGVQQVRVTFMTEESDL 54
+ P P PKP+TL+ +P + SK + E+ L R GSR + R + E S L
Sbjct 149 KAPRPVPKPRTLSQDMRGLSLDPPKEPSKGSHPERTLSRLGSRASTLR-RTDSIYEASSL 207
Query 55 QGRSLIRNV 63
G S + V
Sbjct 208 YGISAMDGV 216
> mmu:20650 Sntb2, Snt2; syntrophin, basic 2
Length=520
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query 24 LAKVEKVLGRTGSRGGVQQVR-VTFMTEESDLQ-GRSLIRNVKGPVREGDILVL 75
LA++ +LG T + GG ++V+ + ++ E++ L GR R V V E D+L+
Sbjct 287 LAELNAMLGATSTAGGSKEVKHIAWLAEQAKLDGGRQQWRPVLMAVTEKDLLLY 340
> hsa:6645 SNTB2, D16S2531E, EST25263, SNT2B2, SNT3, SNTL; syntrophin,
beta 2 (dystrophin-associated protein A1, 59kDa, basic
component 2)
Length=540
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query 24 LAKVEKVLGRTGSRGGVQQVR-VTFMTEESDLQ-GRSLIRNVKGPVREGDILVL 75
LA++ +LG T + GG ++V+ + ++ E++ L GR R V V E D+L+
Sbjct 307 LAELNAMLGATSTAGGSKEVKHIAWLAEQAKLDGGRQQWRPVLMAVTEKDLLLY 360
Lambda K H
0.322 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2296762580
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40