bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_3371_orf1 Length=343 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_112400 hypothetical protein ; K03681 exosome comple... 173 1e-42 bbo:BBOV_III004170 17.m07379; hypothetical protein; K03681 exo... 111 5e-24 pfa:MAL13P1.36 conserved Plasmodium protein, unknown function 111 5e-24 ath:AT4G32175 RNA binding 94.4 6e-19 cel:F59C6.4 exos-3; EXOSome (multiexonuclease complex) compone... 92.8 2e-18 sce:YOL142W RRP40; Exosome non-catalytic core component; invol... 87.0 1e-16 mmu:66362 Exosc3, 2310005D06Rik, AI593501, Rrp40; exosome comp... 85.9 2e-16 xla:734370 exosc3, MGC84934; exosome component 3; K03681 exoso... 82.0 3e-15 ath:AT2G25355 exonuclease-related; K03681 exosome complex comp... 82.0 3e-15 dre:565000 exosc3, MGC112345, im:7140537, zgc:112345; exosome ... 72.4 2e-12 tpv:TP03_0037 hypothetical protein 62.4 2e-09 cpv:cgd3_780 hypothetical protein 58.5 3e-08 hsa:51010 EXOSC3, MGC15120, MGC723, RP11-3J10.8, RRP40, Rrp40p... 46.6 1e-04 sce:YHR069C RRP4; Exosome non-catalytic core component; involv... 37.4 0.074 pfa:PFL1465c hslV, clpQ; Heat shock protein hslv (EC:3.4.25.-)... 35.8 0.24 ath:AT1G03360 ATRRP4; ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL R... 35.4 0.31 xla:447713 ctdp1, MGC81710, ccfdn, fcp1; CTD (carboxy-terminal... 33.9 1.0 tpv:TP02_0081 hypothetical protein; K03679 exosome complex com... 33.1 1.8 mmu:74580 Pyroxd2, 3830409H07Rik, 4833409A17Rik; pyridine nucl... 32.7 2.1 mmu:56191 Tro, AA409408, Maged3, Maged3l, Tnn, Trol, magphinin... 31.2 6.7 > tgo:TGME49_112400 hypothetical protein ; K03681 exosome complex component RRP40 Length=275 Score = 173 bits (438), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 90/190 (47%), Positives = 123/190 (64%), Gaps = 2/190 (1%) Query 154 LPPHGPTYVCISTNNRYCPRVGDIVVGIISSKGSEYYGVNIRSVGPARLATVAGFEGATR 213 L P+ P+Y+ + RY P GD+VVGI+S K +E Y VNIR+ G L V+ FEGATR Sbjct 84 LYPYSPSYI-RGSQKRYEPVEGDVVVGIVSGKKNEAYTVNIRARGDGSLPLVSSFEGATR 142 Query 214 RSKPQLSVGSVLLVRVSHLSPLLGADVTCCSSSCSKPWTSNEKLLGELRGGVIVEVAIPF 273 R KP+L GS++L RV SP LGA++TC +C K WTS EKLLGEL GG +++V P Sbjct 143 RHKPELRRGSLILCRVERASPELGAELTCIDPNCKKSWTSQEKLLGELEGGFVLDVPAPL 202 Query 274 ALTLLCHDSLVLQLLGSRLPFEIAVGLNGRVWLRAETPTFSMRVANCITAAAAGKTPAVL 333 A++L +L+ LG RL FEIA G NGRVW+RA+ ++ + N I A GK V+ Sbjct 203 AISLSSPHCFLLESLGERLAFEIASGANGRVWIRAKDAGDAILIGN-ILVACYGKERHVM 261 Query 334 QAIVDAVLQQ 343 QAI++ ++ + Sbjct 262 QAIINTLVSK 271 > bbo:BBOV_III004170 17.m07379; hypothetical protein; K03681 exosome complex component RRP40 Length=207 Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 56/157 (35%), Positives = 90/157 (57%), Gaps = 8/157 (5%) Query 170 YCPRVGDIVVGIISSKGSEYYGVNIRSVGPARLATVAGFEGATRRSKPQLSVGSVLLVRV 229 Y P++GD V+G++ +K S++Y ++I + A L V GF GAT+R++P ++ G V+ ++ Sbjct 33 YRPKIGDHVIGVVVAKNSDFYSLDIGGLTEAILPAVDGFRGATKRNRPNINEGDVIFCQI 92 Query 230 SHLSPL--LGADVTCCSSSCSKPWTSNEKLLGELRGGVIVEVAIPFALTL---LCHDSLV 284 + P L +V+C K WT+ E G L GG + V IP++ L CH V Sbjct 93 TKQYPRNELPVEVSCLDVDDMKQWTTKETYFGSLEGGFMFSVPIPYSYCLSGARCH---V 149 Query 285 LQLLGSRLPFEIAVGLNGRVWLRAETPTFSMRVANCI 321 L+ R +EIAVGLNGRVW+++ ++ +A I Sbjct 150 LEKCAGRFKYEIAVGLNGRVWIKSTNEVDTILIARYI 186 > pfa:MAL13P1.36 conserved Plasmodium protein, unknown function Length=245 Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 7/233 (3%) Query 112 HPSHPSGKDETQNHGPESAVEVEEAGPCVKARTASMMLPKHVLPPHGP-TYVCISTNNRY 170 H + K E N + E +++ + ++L P+ P Y ++T+ +Y Sbjct 12 HMTIEKDKLEKMNENNFEKIYDNEYENIYRSKCSGILLK----TPYYPYKYDIMNTSYKY 67 Query 171 CPRVGDIVVGIISSKGSEYYGVNIRSVGPARLATVAGFEGATRRSKPQLSVGSVLLVRVS 230 P+VGD+V+GI+ SK +YY ++I + + F+ AT+ S P L G++L + V Sbjct 68 IPKVGDLVIGIVKSKKLDYYQMDINCNCECIIHKIDSFKYATKSSFPNLLNGTLLYMVVE 127 Query 231 HLSPLLGADVT-CCSSSCSKPWTSNEKLLGELRGGVIVEVAIPFALTLLCHDSLVLQLLG 289 ++ + VT C +SS K W + E LGEL G + V I A +L+ +L L+G Sbjct 128 KMNLENNSVVTSCINSSDVKSWINYENYLGELVDGFVFSVNIASAKSLIGDRCYILDLIG 187 Query 290 SRLPFEIAVGLNGRVWLRAETPTFSMRVANCITAAAAGKTPAVLQAIVDAVLQ 342 + +EIAVG NGR+W++A P + + + + GKT A + + ++ Sbjct 188 QDIKYEIAVGHNGRIWIKANDP-LEINLIHSALKHSFGKTRAQMNVLWKSIYN 239 > ath:AT4G32175 RNA binding Length=241 Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 60/163 (36%), Positives = 89/163 (54%), Gaps = 10/163 (6%) Query 161 YVCISTNNRYCPRVGDIVVGIISSKGSEYYGVNIRSVGPA-RLATVAGFEGATRRSKPQL 219 Y S++ RY PR D V+GI+ ++ + V+I+ GP L V FEG TRR+ P+ Sbjct 63 YWLESSHKRYIPRPDDHVLGIVVDSRADNFWVDIK--GPQLALLPVLAFEGGTRRNIPKF 120 Query 220 SVGSVLLVRVSHLSPLLGADVTCCSSSCSKPWTSNEKLLGELRGGVIVEVAIPFALTLLC 279 VG++L +RV + + +++C +S L G LR G + E + + LL Sbjct 121 EVGTLLYLRVVKTNIGMNPELSCTEAS------GKAALFGPLRDGFMFETSTGLSRMLLN 174 Query 280 HDSL-VLQLLGSRLPFEIAVGLNGRVWLRAETPTFSMRVANCI 321 + V++ LG +L FEIAVGLNGRVW+ A P + VAN I Sbjct 175 SPTRPVIEALGKKLSFEIAVGLNGRVWVNATAPRIVIIVANAI 217 > cel:F59C6.4 exos-3; EXOSome (multiexonuclease complex) component family member (exos-3); K03681 exosome complex component RRP40 Length=226 Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/176 (29%), Positives = 89/176 (50%), Gaps = 12/176 (6%) Query 137 GPCVKARTASMMLPKHVLPPHGPTYVCISTNNRYCPRVGDIVVGIISSKGSEYYGVNIRS 196 G V+ +T P G ++ + + RY P+ GD V+ I++SK +++ ++I Sbjct 24 GISVRGQTRIATQPGAFHNDDGKVWLNVHSK-RYIPQEGDRVIAIVTSKTGDFFRLDI-- 80 Query 197 VGPARLATV--AGFEGATRRSKPQLSVGSVLLVRVSHLSPLLGADVTCCSSSCSKPWTSN 254 G A A + FEGAT+R++P L G ++ V +P A++TC Sbjct 81 -GTAEYAMINFTNFEGATKRNRPNLKTGDIIYATVFDTTPRTEAELTCVDDE------KR 133 Query 255 EKLLGELRGGVIVEVAIPFALTLLCHDSLVLQLLGSRLPFEIAVGLNGRVWLRAET 310 + +G+L GG + +V++ L+ +LQ +G FEI VG+NGR+W+ A T Sbjct 134 ARGMGQLNGGFMFKVSLNHCRRLINPSCKILQTVGKFFKFEITVGMNGRIWISAST 189 > sce:YOL142W RRP40; Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; predicted to contain both S1 and KH RNA binding domains; has similarity to human hRrp40p (EXOSC3) (EC:3.1.13.-); K03681 exosome complex component RRP40 Length=240 Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 44/145 (30%), Positives = 81/145 (55%), Gaps = 6/145 (4%) Query 166 TNNRYCPRVGDIVVGIISSKGSEYYGVNIRSVGPARLATVAGFEGATRRSKPQLSVGSVL 225 ++ RY P V D V+G+I S+ Y V++++ + + F A+++++P L VG ++ Sbjct 60 SSKRYIPSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFPNASKKNRPTLQVGDLV 119 Query 226 LVRVSHLSPLLGADVTCCSSSCSKPWTSNEKLLGELRGGVIVEVAIPFALTLLCHDSL-V 284 RV L A++ C S+ T + G L G+I++V FA LL ++ + Sbjct 120 YARVCTAEKELEAEIECFDST-----TGRDAGFGILEDGMIIDVNFNFARQLLFNNDFPL 174 Query 285 LQLLGSRLPFEIAVGLNGRVWLRAE 309 L++L + FE+A+GLNG++W++ E Sbjct 175 LKVLAAHTKFEVAIGLNGKIWVKCE 199 > mmu:66362 Exosc3, 2310005D06Rik, AI593501, Rrp40; exosome component 3; K03681 exosome complex component RRP40 Length=274 Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 91/170 (53%), Gaps = 14/170 (8%) Query 158 GPTYVCISTNNRYCPRVGDIVVGIISSKGSEYYGVNIRSVGPARLATVAGFEGATRRSKP 217 G Y S RY P GD V+GI+ +K + + V++ PA L+ +A FEGAT+R++P Sbjct 96 GGVYWVDSQQKRYVPVKGDHVIGIVIAKSGDIFKVDVGGSEPASLSYLA-FEGATKRNRP 154 Query 218 QLSVGSVL----LVRVSHLSPLLGADVTCCSSSCSKPWTSNEKLLGELRGGVIVEVAIPF 273 + VG ++ +V + P + C SC + + ++G+ G++ +V + Sbjct 155 NVQVGDLIYGQCVVANKDMEPEM-----VCIDSCGR--ANGMGVIGQ--DGLLFKVTLGL 205 Query 274 ALTLLCHDSLVLQLLGSRLPFEIAVGLNGRVWLRAETPTFSMRVANCITA 323 LL D ++Q LG P EI G+NGR+W++A+T ++ +AN + A Sbjct 206 IRKLLAPDCEIVQELGKLYPLEIVFGMNGRIWVKAKTIQQTLILANVLEA 255 > xla:734370 exosc3, MGC84934; exosome component 3; K03681 exosome complex component RRP40 Length=250 Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 100/189 (52%), Gaps = 8/189 (4%) Query 137 GPCVKARTASMMLPKHVLPPHGP--TYVCISTNNRYCPRVGDIVVGIISSKGSEYYGVNI 194 GP + + +++ K L H Y S RY P GD V+GI++++ + + V + Sbjct 47 GPGLMRQEDDLLVNKCGLLRHRDPAVYWVDSQQKRYVPVKGDHVIGIVTTRAGDIFKVEV 106 Query 195 RSVGPARLATVAGFEGATRRSKPQLSVGSVLLVRVSHLSPLLGADVTCCSSSCSKPWTSN 254 A L+ +A FEGAT++++P + G ++ + + + ++ C SS + Sbjct 107 GGSEQASLSYLA-FEGATKKNRPNVKAGDLVYGQFIVANKDMEPEMACIDSSGK---ANG 162 Query 255 EKLLGELRGGVIVEVAIPFALTLLCHDSLVLQLLGSRLPFEIAVGLNGRVWLRAETPTFS 314 + ++G+ G++ +V++ LL + ++Q L S P E+ VG+NGR+W++A+T + Sbjct 163 KGVIGQ--DGLMFKVSLGLVRKLLTPQNDIIQELMSIFPLEVVVGMNGRIWVKAKTTQQT 220 Query 315 MRVANCITA 323 + VAN + A Sbjct 221 LIVANLLEA 229 > ath:AT2G25355 exonuclease-related; K03681 exosome complex component RRP40 Length=213 Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 81/163 (49%), Gaps = 10/163 (6%) Query 161 YVCISTNNRYCPRVGDIVVGIISSKGSEYYGVNIRSVGPA-RLATVAGFEGATRRSKPQL 219 Y S++ RY PR D V+GI+ E Y ++I+ GP L V FEGA RR+ P+ Sbjct 35 YWVESSHKRYVPRPEDHVLGIVVDCKGENYWIDIK--GPQLALLPVLAFEGANRRNYPKF 92 Query 220 SVGSVLLVRVSHLSPLLGADVTCCSSSCSKPWTSNEKLLGELRGGVIVEVAIPFALTLLC 279 V ++L RV + + +++C S G L+ G + E + + LL Sbjct 93 EVSTLLYTRVVKTNTGMNPELSCVDESGKAAG------FGPLKDGFMFETSTGLSRMLLS 146 Query 280 HDSL-VLQLLGSRLPFEIAVGLNGRVWLRAETPTFSMRVANCI 321 + VL+ LG +L FE A GLNGR W+ A P + VAN + Sbjct 147 SPTCPVLEALGKKLSFETAFGLNGRCWVHAAAPRIVIIVANAL 189 > dre:565000 exosc3, MGC112345, im:7140537, zgc:112345; exosome component 3; K03681 exosome complex component RRP40 Length=247 Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/174 (28%), Positives = 90/174 (51%), Gaps = 11/174 (6%) Query 151 KHVLPPHGPTYVCISTNNRYCPRVGDIVVGIISSKGSEYYGVNIRSVGPARLATVAGFEG 210 KH P Y RY P G+ V+GI+++K + + V++ A L+ +A FEG Sbjct 63 KHKQPN---MYWVNCQQRRYVPAKGESVIGIVTAKSGDVFKVDVGGSEQASLSYLA-FEG 118 Query 211 ATRRSKPQLSVGSVLLVRVSHLSPLLGADVTCCSSSCSKPWTSNEKLLGELRG-GVIVEV 269 AT+R++P + VG ++ + + + + ++ C S C + +G G G++ +V Sbjct 119 ATKRNRPNVQVGDLVFGQFTIANKDMEPELVCIDS-CGRA-----NGMGVFGGDGLLFKV 172 Query 270 AIPFALTLLCHDSLVLQLLGSRLPFEIAVGLNGRVWLRAETPTFSMRVANCITA 323 ++ LL S ++ L P E+ VG+NGRVW++A T ++ ++N + A Sbjct 173 SLGLVRRLLAPQSDLVSDLEKMFPCEMVVGMNGRVWVKARTVQHTLILSNLLEA 226 > tpv:TP03_0037 hypothetical protein Length=143 Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 30/126 (23%), Positives = 63/126 (50%), Gaps = 7/126 (5%) Query 205 VAGFEGATRRSKPQLSVGSVLLVRVSHLSPLLGADVTCCSSSCSKPWTSNEKLLGELRGG 264 + GF G T++ KP L++G V+ V + L +++C + +K W++NE G L G Sbjct 3 IDGFRGTTKKYKPNLTIGDVVFCYVYGMYDGL-IELSCVTMDDNKNWSTNETYFGPLSNG 61 Query 265 VIVEVAIPFALTLLCHDSLVLQLLGSRL------PFEIAVGLNGRVWLRAETPTFSMRVA 318 + ++ + + + +++ +L L +EI +G NGRVW+ + ++++ Sbjct 62 FLTQLPLQHVQSYVNTVNIMFRLYNEELEVLRGLKYEIVLGFNGRVWIGNTSNELKLKIS 121 Query 319 NCITAA 324 I + Sbjct 122 RFIKLS 127 > cpv:cgd3_780 hypothetical protein Length=211 Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 57/133 (42%), Gaps = 31/133 (23%) Query 207 GFEGATRRSKPQLSVGSVLLVRVSHLSPLLGA-DVTCCSSSCSKPWTSNEKLLGELRG-- 263 FEGAT+R+KP L G+ + R++++ G ++TC + K W++NE LG L+ Sbjct 31 AFEGATKRNKPNLVPGNYVCSRINYVDLESGEIELTCITPEEKKTWSNNENYLGVLKNSN 90 Query 264 ----------------------------GVIVEVAIPFALTLLCHDSLVLQLLGSRLPFE 295 G+ V V A LL S VL+ L +E Sbjct 91 YKNTNIIEDYSKSDRSSLPGESQSCIKDGMTVTVPQSVAQILLADQSYVLEALSKYFAYE 150 Query 296 IAVGLNGRVWLRA 308 I VG NG +W A Sbjct 151 ICVGQNGIIWFSA 163 > hsa:51010 EXOSC3, MGC15120, MGC723, RP11-3J10.8, RRP40, Rrp40p, bA3J10.7, hRrp-40, hRrp40p, p10; exosome component 3; K03681 exosome complex component RRP40 Length=164 Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 1/62 (1%) Query 158 GPTYVCISTNNRYCPRVGDIVVGIISSKGSEYYGVNIRSVGPARLATVAGFEGATRRSKP 217 G Y S RY P GD V+GI+++K + + V++ PA L+ ++ FEGAT+R++P Sbjct 97 GGVYWVDSQQKRYVPVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLS-FEGATKRNRP 155 Query 218 QL 219 + Sbjct 156 NV 157 > sce:YHR069C RRP4; Exosome non-catalytic core component; involved in 3'-5' RNA processing and degradation in both the nucleus and the cytoplasm; predicted to contain RNA binding domains; has similarity to human hRrp4p (EXOSC2) (EC:3.1.13.-); K03679 exosome complex component RRP4 Length=359 Score = 37.4 bits (85), Expect = 0.074, Method: Compositional matrix adjust. Identities = 43/145 (29%), Positives = 61/145 (42%), Gaps = 19/145 (13%) Query 169 RYCPRVGDIVVGIISSKGSEYYGVNIRSVGPA--RLATVAGFEGATRRS--KPQLSVGSV 224 RY P GD VVG I+ G++ + V+I A L +V G RR +L + S Sbjct 103 RYAPETGDHVVGRIAEVGNKRWKVDIGGKQHAVLMLGSVNLPGGILRRKSESDELQMRSF 162 Query 225 LLVRVSHLSPLLGADVTCCSSSCSKPWTSNEKLLGELRGGVIVEVAIPFALTLLCHDSLV 284 L LL A+V S + G+LR G+ +V P +L + + Sbjct 163 L-----KEGDLLNAEVQSLFQDGSASLHTRSLKYGKLRNGMFCQV--PSSLIVRAKNHT- 214 Query 285 LQLLGSRLPFEIAV--GLNGRVWLR 307 LP I V G+NG +WLR Sbjct 215 -----HNLPGNITVVLGVNGYIWLR 234 > pfa:PFL1465c hslV, clpQ; Heat shock protein hslv (EC:3.4.25.-); K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] Length=207 Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 5/62 (8%) Query 151 KHVLPPHGPTYVCISTNNRYCPRVGDIVVGIISSKGSEYYGVNIRSVGPARLATVAGFEG 210 K ++P HG T +C+ NN C +GD +V S+G+ N + + + + GF G Sbjct 30 KLIIPRHGTTILCVRKNNEVCL-IGDGMV----SQGTMIVKGNAKKIRRLKDNILMGFAG 84 Query 211 AT 212 AT Sbjct 85 AT 86 > ath:AT1G03360 ATRRP4; ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4); RNA binding / exonuclease; K03679 exosome complex component RRP4 Length=322 Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust. Identities = 36/142 (25%), Positives = 66/142 (46%), Gaps = 14/142 (9%) Query 169 RYCPRVGDIVVGIISSKGSEYYGV--NIRSVGPARLATVAGFEGATRR--SKPQLSVGSV 224 RY P VGDIVVG + + + V N G L+++ +G RR S +L++ ++ Sbjct 88 RYKPEVGDIVVGRVIEVAQKRWRVELNFNQDGVLMLSSMNMPDGIQRRRTSVDELNMRNI 147 Query 225 LLVRVSHLSPLLGADVTCCSSSCSKPWTSNEKLLGELRGGVIVEVAIPFALTLLCHDSLV 284 V H ++ A+V S + + G+L G +++V P+ + H Sbjct 148 F---VEH--DVVCAEVRNFQHDGSLQLQARSQKYGKLEKGQLLKVD-PYLVKRSKHHFHY 201 Query 285 LQLLGSRLPFEIAVGLNGRVWL 306 ++ LG ++ +G NG +W+ Sbjct 202 VESLG----IDLIIGCNGFIWV 219 > xla:447713 ctdp1, MGC81710, ccfdn, fcp1; CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 (EC:3.1.3.16); K01090 protein phosphatase [EC:3.1.3.16] Length=977 Score = 33.9 bits (76), Expect = 1.0, Method: Compositional matrix adjust. Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 10/88 (11%) Query 184 SKGSEYYGVNIRSVGPARLATVAGFEGATRRSKPQLSVGSVLLVRVSHLSPLLGADVTCC 243 S+ S+Y V + P RL + GA+ + +GSVL + V P+LGA+V Sbjct 10 SQSSQYCEVRLSGPRPLRLVEWKVYAGAS------VQIGSVLALAV----PVLGAEVVRS 59 Query 244 SSSCSKPWTSNEKLLGELRGGVIVEVAI 271 +P + E+ + R GV+ E+ + Sbjct 60 HEETGRPHRAPERKIKSDRAGVVQELCL 87 > tpv:TP02_0081 hypothetical protein; K03679 exosome complex component RRP4 Length=263 Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust. Identities = 31/149 (20%), Positives = 60/149 (40%), Gaps = 23/149 (15%) Query 169 RYCPRVGDIVVGIISSKGSEYYGVNIRSVGPARLA--TVAGFEGATRRSKPQLSVGSVLL 226 +Y ++GDIV+G++ S + +++ +V A+L+ V E A RR + Sbjct 56 KYVGQIGDIVIGVVDSIQGNKWFLDVNAVELAQLSILQVNTEELANRRKIDE-------- 107 Query 227 VRVSHLSPLLGA-DVTCCSSSCSKP-----WTSNEKLLGELRGGVIVEVAIPFALTLLCH 280 + +S L D+ C P + G+L G++V++ + H Sbjct 108 -DIYEMSNLFNVNDIVSCEIQRISPTGTIMLQTRTSKYGKLENGILVKIKPNLVIRKGKH 166 Query 281 DSLVLQLLGSRLPFEIAVGLNGRVWLRAE 309 + I +G NG +WL ++ Sbjct 167 ------IYDMECGVRIILGCNGYIWLTSQ 189 > mmu:74580 Pyroxd2, 3830409H07Rik, 4833409A17Rik; pyridine nucleotide-disulphide oxidoreductase domain 2 Length=581 Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 11/73 (15%) Query 266 IVEVAIPFAL--TLL---CHDSLVLQLLGSRLPFEIAVGLNGRVWLRAETPTFSMRVANC 320 ++E+ IP +L TL CH V+ L P+ +A G+VW E T++ +V +C Sbjct 433 MIELCIPSSLDPTLAPPGCH---VVSLFTQYTPYTLA---GGKVWNEQEKNTYADKVFDC 486 Query 321 ITAAAAGKTPAVL 333 I A A G +VL Sbjct 487 IEAYAPGFKRSVL 499 > mmu:56191 Tro, AA409408, Maged3, Maged3l, Tnn, Trol, magphinin; trophinin Length=2087 Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query 92 ASASAAAATARSFQWSAVYVHPSHPSGKDETQNHGPESAVEVEEAGPCVK 141 AS+ A++R + SA V P P GK + N G SA E EA P ++ Sbjct 425 ASSRQTEASSRQIEASAAAVRPKKPRGK-KGNNKGSNSASEPSEAPPAIQ 473 Lambda K H 0.320 0.133 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 14601168200 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40