bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_3543_orf1
Length=112
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_098970 LSM domain-containing protein ; K12622 U6 sn... 101 5e-22
mmu:67678 Lsm3, 1010001J12Rik, 2610005D18Rik, 6030401D18Rik, S... 92.4 3e-19
hsa:27258 LSM3, SMX4, USS2, YLR438C; LSM3 homolog, U6 small nu... 92.4 3e-19
ath:AT1G21190 small nuclear ribonucleoprotein, putative / snRN... 92.0 4e-19
ath:AT1G76860 small nuclear ribonucleoprotein, putative / snRN... 89.7 2e-18
xla:100049097 lsm3; LSM3 homolog, U6 small nuclear RNA associa... 89.7 2e-18
cel:Y62E10A.12 lsm-3; LSM Sm-like protein family member (lsm-3... 86.7 2e-17
cpv:cgd7_690 small nuclear ribonucleoprotein ; K12622 U6 snRNA... 86.3 2e-17
pfa:PF08_0049 lsm3 homologue, putative; K12622 U6 snRNA-associ... 83.6 2e-16
bbo:BBOV_III010410 17.m07899; LSM domain containing protein; K... 81.3 7e-16
sce:YLR438C-A LSM3, SMX4, USS2; Lsm (Like Sm) protein; part of... 74.7 6e-14
tpv:TP02_0106 hypothetical protein; K12622 U6 snRNA-associated... 60.8 1e-09
ath:AT2G03870 small nuclear ribonucleoprotein, putative / snRN... 53.5 1e-07
tpv:TP02_0729 small nuclear ribonucleoprotein D2; K11096 small... 49.7 2e-06
tgo:TGME49_070830 small nuclear ribonucleoprotein Sm D2, putat... 49.7 2e-06
ath:AT2G47640 small nuclear ribonucleoprotein D2, putative / s... 49.7 2e-06
bbo:BBOV_I004230 19.m02306; small nuclear ribonucleoprotein; K... 48.5 5e-06
bbo:BBOV_III001070 17.m07121; LSM domain containing protein; K... 48.1 6e-06
sce:YNL147W LSM7; Lsm (Like Sm) protein; part of heteroheptame... 47.4 1e-05
tgo:TGME49_086560 u6 snRNA-associated Sm-like protein, putativ... 47.4 1e-05
cpv:cgd4_3190 small nuclear ribonucleoprotein ; K11096 small n... 47.4 1e-05
ath:AT3G62840 hypothetical protein 46.2 3e-05
mmu:66094 Lsm7, 0910001B06Rik, 1110033F18Rik; LSM7 homolog, U6... 45.8 3e-05
mmu:100041500 Gm10146; predicted gene 10146; K12626 U6 snRNA-a... 45.8 3e-05
mmu:100505147 u6 snRNA-associated Sm-like protein LSm7-like 45.8 3e-05
tpv:TP03_0732 U6 snRNA-associated protein; K12626 U6 snRNA-ass... 45.8 3e-05
xla:444555 lsm7, GC83430; LSM7 homolog, U6 small nuclear RNA a... 45.4 4e-05
hsa:51690 LSM7, YNL147W; LSM7 homolog, U6 small nuclear RNA as... 45.4 4e-05
pfa:PF14_0146 ribonucleoprotein, putative; K11086 small nuclea... 45.4 5e-05
dre:573047 lsm7, fj64g01, wu:fj64g01, zgc:66405; LSM7 homolog,... 44.7 7e-05
cel:ZK593.7 lsm-7; LSM Sm-like protein family member (lsm-7); ... 44.3 1e-04
pfa:PFL0460w lsm7 homologue, putative; K12626 U6 snRNA-associa... 43.5 2e-04
sce:YJL124C LSM1, SPB8; Lsm (Like Sm) protein; forms heterohep... 42.0 5e-04
cel:C52E4.3 snr-4; Small Nuclear Ribonucleoprotein family memb... 41.6 6e-04
pfa:PFB0865w small nuclear ribonucleoprotein, putative; K11096... 41.2 7e-04
ath:AT5G44500 small nuclear ribonucleoprotein associated prote... 40.8 0.001
tpv:TP02_0362 small nuclear ribonucleoprotein B; K11086 small ... 40.8 0.001
dre:550244 snrpd2, im:6908977, si:dkey-113g17.2, zgc:110732; s... 40.4 0.001
mmu:545531 Gm5848, EG545531; predicted pseudogene 5848 40.4
ath:AT5G48870 SAD1; SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1)... 40.0 0.002
cel:F28F8.3 lsm-5; LSM Sm-like protein family member (lsm-5); ... 40.0 0.002
bbo:BBOV_III006010 17.m07530; Sm domain containing protein; K1... 40.0 0.002
ath:AT4G20440 smB; smB (small nuclear ribonucleoprotein associ... 40.0 0.002
mmu:107686 Snrpd2, 1810009A06Rik, MGC62953, SMD2; small nuclea... 39.7 0.003
hsa:6633 SNRPD2, SMD2, SNRPD1, Sm-D2; small nuclear ribonucleo... 39.7 0.003
xla:100381103 snrpd2, sm-d2, smd2, snrpd1; small nuclear ribon... 39.3 0.003
cpv:cgd1_2910 hypothetical protein ; K11086 small nuclear ribo... 39.3 0.003
mmu:100043618 Gm10120; small nuclear ribonucleoprotein D2 pseu... 38.5 0.006
xla:779307 snrpg, MGC154809; small nuclear ribonucleoprotein p... 38.1 0.006
sce:YER146W LSM5; Lsm (Like Sm) protein; part of heteroheptame... 38.1 0.007
> tgo:TGME49_098970 LSM domain-containing protein ; K12622 U6
snRNA-associated Sm-like protein LSm3
Length=96
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 45/87 (51%), Positives = 66/87 (75%), Gaps = 4/87 (4%)
Query 29 MLQEPLDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDD----AT 84
+LQEPLDI R+S++E+V +KCRG+R++ G LH+YD+HLN+VL D EE T V
Sbjct 6 LLQEPLDIVRVSLDERVTIKCRGDREVVGKLHAYDMHLNMVLGDVEEVATTVTSDPLTGD 65
Query 85 NKLSKTVRKLPLIFVRGDAVVLLSPLS 111
+ KT R+LPLIF+RGDA++L++P++
Sbjct 66 EQTKKTTRRLPLIFLRGDAIILVAPVN 92
> mmu:67678 Lsm3, 1010001J12Rik, 2610005D18Rik, 6030401D18Rik,
SMX4, USS2; LSM3 homolog, U6 small nuclear RNA associated (S.
cerevisiae); K12622 U6 snRNA-associated Sm-like protein LSm3
Length=102
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 66/91 (72%), Gaps = 4/91 (4%)
Query 23 KMKNAQMLQEPLDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTV--V 80
+ + ++EPLD+ RLS++E+++VK R +R+L+G LH+YD HLN++L D EET+T +
Sbjct 7 QQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEI 66
Query 81 DDATNK--LSKTVRKLPLIFVRGDAVVLLSP 109
D+ T + T R +P++FVRGD VVL++P
Sbjct 67 DEETYEEIYKSTKRNIPMLFVRGDGVVLVAP 97
> hsa:27258 LSM3, SMX4, USS2, YLR438C; LSM3 homolog, U6 small
nuclear RNA associated (S. cerevisiae); K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=102
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 66/91 (72%), Gaps = 4/91 (4%)
Query 23 KMKNAQMLQEPLDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTV--V 80
+ + ++EPLD+ RLS++E+++VK R +R+L+G LH+YD HLN++L D EET+T +
Sbjct 7 QQQTTNTVEEPLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIEI 66
Query 81 DDATNK--LSKTVRKLPLIFVRGDAVVLLSP 109
D+ T + T R +P++FVRGD VVL++P
Sbjct 67 DEETYEEIYKSTKRNIPMLFVRGDGVVLVAP 97
> ath:AT1G21190 small nuclear ribonucleoprotein, putative / snRNP,
putative / Sm protein, putative; K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=97
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 63/84 (75%), Gaps = 4/84 (4%)
Query 30 LQEPLDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTV--VDDATNK- 86
++EPLD+ RLS+EE+++VK R +R+L+G LH++D HLN++L D EE +T +DD T +
Sbjct 9 VREPLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIEIDDETYEE 68
Query 87 -LSKTVRKLPLIFVRGDAVVLLSP 109
+ T R +P +FVRGD V+L+SP
Sbjct 69 IVRTTKRTVPFLFVRGDGVILVSP 92
> ath:AT1G76860 small nuclear ribonucleoprotein, putative / snRNP,
putative / Sm protein, putative; K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=98
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 63/84 (75%), Gaps = 4/84 (4%)
Query 30 LQEPLDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVV--DDATNK- 86
++EPLD+ RLS++E+++VK R +R+L+G LH++D HLN++L D EET+T V DD T +
Sbjct 9 VREPLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVEIDDETYEE 68
Query 87 -LSKTVRKLPLIFVRGDAVVLLSP 109
+ T R + +FVRGD V+L+SP
Sbjct 69 IVRTTKRTIEFLFVRGDGVILVSP 92
> xla:100049097 lsm3; LSM3 homolog, U6 small nuclear RNA associated;
K12622 U6 snRNA-associated Sm-like protein LSm3
Length=102
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 64/84 (76%), Gaps = 4/84 (4%)
Query 30 LQEPLDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTV--VDDATNK- 86
++EPLD+ RLS++E+++VK R +R+L+G L++YD HLN++L D EET+T +D+ T +
Sbjct 14 VEEPLDLIRLSLDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTIEIDEETYEE 73
Query 87 -LSKTVRKLPLIFVRGDAVVLLSP 109
T R +P++FVRGD VVL++P
Sbjct 74 IYKSTKRNIPMLFVRGDGVVLVAP 97
> cel:Y62E10A.12 lsm-3; LSM Sm-like protein family member (lsm-3);
K12622 U6 snRNA-associated Sm-like protein LSm3
Length=102
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 66/84 (78%), Gaps = 4/84 (4%)
Query 30 LQEPLDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTV--VDDATNK- 86
++EPLD+ RLS++E+V+VK R +R+L+G L ++D HLN+VL++ EET+T VD+ T +
Sbjct 14 VEEPLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDTFEE 73
Query 87 -LSKTVRKLPLIFVRGDAVVLLSP 109
+T R +P++FVRGD+V+L+SP
Sbjct 74 IYKQTKRVVPMLFVRGDSVILVSP 97
> cpv:cgd7_690 small nuclear ribonucleoprotein ; K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=95
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 61/84 (72%), Gaps = 8/84 (9%)
Query 32 EPLDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETL------TVVDDATN 85
EPLD+ RLS++E+VFVKCRG R+LKGTL++YD H+N+VL + EET + ++
Sbjct 6 EPLDLIRLSLDEQVFVKCRGNRELKGTLYAYDPHMNMVLGNVEETYYEEESKSDTQNSEK 65
Query 86 KLSKTVRKLPLIFVRGDAVVLLSP 109
KL K R++ ++F+RGD ++L+ P
Sbjct 66 KLKK--RRIEMLFLRGDLIILVKP 87
> pfa:PF08_0049 lsm3 homologue, putative; K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=91
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 36/88 (40%), Positives = 62/88 (70%), Gaps = 2/88 (2%)
Query 24 MKNAQMLQEPLDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEET--LTVVD 81
M+ ++Q PLD RL++EE++F+KC+G+R+L G L +YD HLN++L++ ET +V +
Sbjct 1 MEKIALIQNPLDYIRLNMEEEIFLKCKGDRELIGKLDAYDNHLNMILSNVRETYKYSVKE 60
Query 82 DATNKLSKTVRKLPLIFVRGDAVVLLSP 109
+ + K R L ++FVRGD+++L+S
Sbjct 61 NDEETVKKMERNLDMVFVRGDSIILVSS 88
> bbo:BBOV_III010410 17.m07899; LSM domain containing protein;
K12622 U6 snRNA-associated Sm-like protein LSm3
Length=89
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 38/84 (45%), Positives = 62/84 (73%), Gaps = 4/84 (4%)
Query 29 MLQEPLDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVV--DDATNK 86
M +EP+D+ R++++E+V++KC+G R++ G LH+YD H N++L+DA ET T V D TN+
Sbjct 1 MSKEPMDVIRVNLDERVYLKCKGGREIVGQLHAYDEHCNMLLSDAIETFTSVELDPTTNQ 60
Query 87 LSKTV--RKLPLIFVRGDAVVLLS 108
T+ + ++FVRGDA++LLS
Sbjct 61 EVTTITSKDSGVVFVRGDALILLS 84
> sce:YLR438C-A LSM3, SMX4, USS2; Lsm (Like Sm) protein; part
of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or
8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear
Lsm8p complex part of U6 snRNP and possibly involved in processing
tRNA, snoRNA, and rRNA; K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=89
Score = 74.7 bits (182), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 59/79 (74%), Gaps = 2/79 (2%)
Query 30 LQEPLDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSK 89
++ PLD+ +L+++E+V++K RG R L GTL ++D H N+VL+DA ET+ +++ +LS+
Sbjct 1 METPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNN--EELSE 58
Query 90 TVRKLPLIFVRGDAVVLLS 108
+ R+ ++F+RGD V L+S
Sbjct 59 SERRCEMVFIRGDTVTLIS 77
> tpv:TP02_0106 hypothetical protein; K12622 U6 snRNA-associated
Sm-like protein LSm3
Length=84
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 45/63 (71%), Gaps = 0/63 (0%)
Query 30 LQEPLDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSK 89
LQEPLD+ RL+++E +++KC+ R+L G L ++D H N+VL++ ET+T V+ N ++
Sbjct 7 LQEPLDMIRLNLDEVIYLKCKNGRELVGRLQAFDEHCNMVLSEVTETITTVELDNNSKNE 66
Query 90 TVR 92
T +
Sbjct 67 TTK 69
> ath:AT2G03870 small nuclear ribonucleoprotein, putative / snRNP,
putative / Sm protein, putative; K12626 U6 snRNA-associated
Sm-like protein LSm7
Length=99
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/76 (47%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query 34 LDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTVRK 93
LD+A+ V++ V VK G RQ+ GTL YD LNLVL +A E + DD +T R+
Sbjct 9 LDLAKF-VDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQT-RR 66
Query 94 LPLIFVRGDAVVLLSP 109
L LI RG AV+L+SP
Sbjct 67 LGLIVCRGTAVMLVSP 82
> tpv:TP02_0729 small nuclear ribonucleoprotein D2; K11096 small
nuclear ribonucleoprotein D2
Length=106
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 4/100 (4%)
Query 12 SLPLAQFPQQVKMKNAQMLQEPLDIARLSVEE--KVFVKCRGERQLKGTLHSYDVHLNLV 69
S + Q P +++ N PL I V E +V + CR R++ + ++D H N++
Sbjct 2 STKVKQDPTPMELDNKDNPAGPLSILEECVRENCQVLINCRNNRKILARVKAFDRHCNMI 61
Query 70 LADAEETLTVVDDATN--KLSKTVRKLPLIFVRGDAVVLL 107
L + E TV T KL R L +F+RGD+V+++
Sbjct 62 LTNVREMWTVRGKGTGKKKLETKDRFLSRLFLRGDSVIVV 101
> tgo:TGME49_070830 small nuclear ribonucleoprotein Sm D2, putative
; K11096 small nuclear ribonucleoprotein D2
Length=104
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query 31 QEPLDIARLSVEE--KVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLS 88
+ PL + SV++ +V + CR R++ G + ++D H NLVL D E T K
Sbjct 17 EGPLSVLAASVKDNSQVLINCRNNRKVLGRVKAFDRHCNLVLTDVREMWTETSKGGGKKK 76
Query 89 -KTVRK---LPLIFVRGDAVVLL 107
+TV K + +F+RGDAV+L+
Sbjct 77 VRTVNKDRFISKLFLRGDAVILI 99
> ath:AT2G47640 small nuclear ribonucleoprotein D2, putative /
snRNP core protein D2, putative / Sm protein D2, putative;
K11096 small nuclear ribonucleoprotein D2
Length=109
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 7/103 (6%)
Query 12 SLPLAQFPQQVKMKNAQMLQEPLDIARLSVEE--KVFVKCRGERQLKGTLHSYDVHLNLV 69
S P+ + Q K + + PL + +SV+ +V + CR R+L G + ++D H N+V
Sbjct 2 SKPMEEDTNQGKTEEEEFNTGPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMV 61
Query 70 LADAEETLTVVDDATNKLSKTV-----RKLPLIFVRGDAVVLL 107
L + E T V K + R + +F+RGD+V+++
Sbjct 62 LENVREMWTEVPKTGKGKKKALPVNRDRFISKMFLRGDSVIIV 104
> bbo:BBOV_I004230 19.m02306; small nuclear ribonucleoprotein;
K11096 small nuclear ribonucleoprotein D2
Length=162
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Query 33 PLDIARLSVEE--KVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNK---L 87
PL + V + +V + CR R+L G + ++D H N++L D E T V K +
Sbjct 79 PLSVLEACVRDNSQVLINCRSNRKLLGRVKAFDRHFNMILTDVREMWTEVSGGGGKKKYM 138
Query 88 SKTVRKLPLIFVRGDAVVLL 107
+K R + +F+RGD+VV++
Sbjct 139 NKD-RYISRLFLRGDSVVVV 157
> bbo:BBOV_III001070 17.m07121; LSM domain containing protein;
K12626 U6 snRNA-associated Sm-like protein LSm7
Length=103
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query 43 EKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTVRKLPLIFVRGD 102
+KV+VK G R+++G L +DV NLVL + EE L DD ++++ R+L L+ RG
Sbjct 23 KKVYVKFSGGREVQGILRGHDVMSNLVLDETEEFLRDPDD-LDRVTDKTRQLGLLVARGT 81
Query 103 AVVLLSPL 110
+V ++ P+
Sbjct 82 SVTVIHPV 89
> sce:YNL147W LSM7; Lsm (Like Sm) protein; part of heteroheptameric
complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic
Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex
part of U6 snRNP and possibly involved in processing tRNA,
snoRNA, and rRNA; K12626 U6 snRNA-associated Sm-like protein
LSm7
Length=115
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 43/77 (55%), Gaps = 3/77 (3%)
Query 34 LDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNK--LSKTV 91
LD+A+ + K+ VK G + + G L YD +NLVL D E ++ DD N +SK
Sbjct 28 LDLAKYK-DSKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNA 86
Query 92 RKLPLIFVRGDAVVLLS 108
RKL L +RG +V LS
Sbjct 87 RKLGLTVIRGTILVSLS 103
> tgo:TGME49_086560 u6 snRNA-associated Sm-like protein, putative
; K12626 U6 snRNA-associated Sm-like protein LSm7
Length=99
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query 43 EKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTVRKLPLIFVRGD 102
++V VK G R++ G L +D NLVL + EE L +D L +T R L LI RG
Sbjct 18 QRVRVKFSGGREITGVLKGHDAVSNLVLDETEEFLRDPEDPYKLLDQT-RTLGLIVARGT 76
Query 103 AVVLLSPL 110
AVVL+SP+
Sbjct 77 AVVLISPV 84
> cpv:cgd4_3190 small nuclear ribonucleoprotein ; K11096 small
nuclear ribonucleoprotein D2
Length=106
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query 44 KVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTV----RKLPLIFV 99
++ V CR R++ G + ++D H NL+L DA E T + K S R + +FV
Sbjct 34 QILVNCRNNRKILGRVKAFDRHCNLLLTDAREIWTESMKSGKKGSAKYINKDRFISKLFV 93
Query 100 RGDAVVLL 107
RGD+V+L+
Sbjct 94 RGDSVILI 101
> ath:AT3G62840 hypothetical protein
Length=108
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 44/82 (53%), Gaps = 7/82 (8%)
Query 33 PLDIARLSVEE--KVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKT 90
PL + +SV+ +V + CR R+L G + ++D H N+VL + E T V K
Sbjct 22 PLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVREMWTEVPKTGKGKKKA 81
Query 91 V-----RKLPLIFVRGDAVVLL 107
+ R + +F+RGD+V+++
Sbjct 82 LPVNRDRFISKMFLRGDSVIIV 103
> mmu:66094 Lsm7, 0910001B06Rik, 1110033F18Rik; LSM7 homolog,
U6 small nuclear RNA associated (S. cerevisiae)
Length=103
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query 34 LDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTVRK 93
LD+++ +++ + VK +G R+ G L +D LNLVL E + DD KL++ R+
Sbjct 13 LDLSKY-IDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQY-KLTEDTRQ 70
Query 94 LPLIFVRGDAVVLLSP 109
L L+ RG +VVL+ P
Sbjct 71 LGLVVCRGTSVVLICP 86
> mmu:100041500 Gm10146; predicted gene 10146; K12626 U6 snRNA-associated
Sm-like protein LSm7
Length=103
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query 34 LDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTVRK 93
LD+++ +++ + VK +G R+ G L +D LNLVL E + DD KL++ R+
Sbjct 13 LDLSKY-IDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQY-KLTEDTRQ 70
Query 94 LPLIFVRGDAVVLLSP 109
L L+ RG +VVL+ P
Sbjct 71 LGLVVCRGTSVVLICP 86
> mmu:100505147 u6 snRNA-associated Sm-like protein LSm7-like
Length=103
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query 34 LDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTVRK 93
LD+++ +++ + VK +G R+ G L +D LNLVL E + DD KL++ R+
Sbjct 13 LDLSKY-IDKTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQY-KLTEDTRQ 70
Query 94 LPLIFVRGDAVVLLSP 109
L L+ RG +VVL+ P
Sbjct 71 LGLVVCRGTSVVLICP 86
> tpv:TP03_0732 U6 snRNA-associated protein; K12626 U6 snRNA-associated
Sm-like protein LSm7
Length=104
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query 43 EKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTVRKLPLIFVRGD 102
++V+VK G R++KG L +D NLVL D E L D++ KL+ R L L+ RG
Sbjct 23 KEVYVKFSGGREVKGVLRGHDAMSNLVLDDTVEYLKDSSDSS-KLTGEKRNLGLLVARGT 81
Query 103 AVVLLSPL 110
+V ++ P+
Sbjct 82 SVTVVYPV 89
> xla:444555 lsm7, GC83430; LSM7 homolog, U6 small nuclear RNA
associated; K12626 U6 snRNA-associated Sm-like protein LSm7
Length=103
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query 34 LDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTVRK 93
LD+++ +++ + VK +G R+ G L +D LNLVL E + DD KL++ R+
Sbjct 13 LDLSKY-IDKTIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQY-KLTEDTRQ 70
Query 94 LPLIFVRGDAVVLLSP 109
L L+ RG +VVL+ P
Sbjct 71 LGLVVCRGTSVVLICP 86
> hsa:51690 LSM7, YNL147W; LSM7 homolog, U6 small nuclear RNA
associated (S. cerevisiae); K12626 U6 snRNA-associated Sm-like
protein LSm7
Length=103
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query 34 LDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTVRK 93
LD+++ +++ + VK +G R+ G L +D LNLVL E + DD KL++ R+
Sbjct 13 LDLSKY-IDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQY-KLTEDTRQ 70
Query 94 LPLIFVRGDAVVLLSP 109
L L+ RG +VVL+ P
Sbjct 71 LGLVVCRGTSVVLICP 86
> pfa:PF14_0146 ribonucleoprotein, putative; K11086 small nuclear
ribonucleoprotein B and B'
Length=201
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query 41 VEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTVRKLPLIFVR 100
++ +V V R GT SYD H+N+VL DAEE V N L + R + LI +R
Sbjct 11 LQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEE-FRKVKSQENSLKEIKRVVGLILIR 69
Query 101 GDAVVLLS 108
G+ +V +
Sbjct 70 GENIVSFT 77
> dre:573047 lsm7, fj64g01, wu:fj64g01, zgc:66405; LSM7 homolog,
U6 small nuclear RNA associated (S. cerevisiae); K12626 U6
snRNA-associated Sm-like protein LSm7
Length=103
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query 41 VEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTVRKLPLIFVR 100
+++ + VK +G R+ G L +D LNLVL E + DD KL++ R+L L+ R
Sbjct 19 IDKHIRVKFQGGREASGVLKGFDPLLNLVLDGTIEYMRDPDDQY-KLTEDTRQLGLVVCR 77
Query 101 GDAVVLLSP 109
G +VVL+ P
Sbjct 78 GTSVVLICP 86
> cel:ZK593.7 lsm-7; LSM Sm-like protein family member (lsm-7);
K12626 U6 snRNA-associated Sm-like protein LSm7
Length=104
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 45/82 (54%), Gaps = 14/82 (17%)
Query 34 LDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETL------TVVDDATNKL 87
+D+ R +++++ VK +G R+ G L +D LN+VL D E L +VV D T
Sbjct 14 VDLTRF-LDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDET--- 69
Query 88 SKTVRKLPLIFVRGDAVVLLSP 109
R+L LI RG A+ ++SP
Sbjct 70 ----RQLGLIVARGTAITVVSP 87
> pfa:PFL0460w lsm7 homologue, putative; K12626 U6 snRNA-associated
Sm-like protein LSm7
Length=108
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query 35 DIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTVRKL 94
DI + + +K+ VK G R++ GTL +D NLVL EE + +D+ KT R +
Sbjct 20 DIKKF-MNQKIRVKFDGGREVVGTLIGHDAIFNLVLDKTEEYIRDPNDSFVVTDKT-RSI 77
Query 95 PLIFVRGDAVVLLSPL 110
LI RG +V L++P+
Sbjct 78 GLIVARGTSVALITPV 93
> sce:YJL124C LSM1, SPB8; Lsm (Like Sm) protein; forms heteroheptameric
complex (with Lsm2p, Lsm3p, Lsm4p, Lsm5p, Lsm6p, and
Lsm7p) involved in degradation of cytoplasmic mRNAs; K12620
U6 snRNA-associated Sm-like protein LSm1
Length=172
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query 40 SVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTVRKLPLIFV 99
SV+ K+FV R R L G L ++D + NL+L D E + ++ NK ++ R + +I
Sbjct 49 SVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEE--NKYAEEDRGIFMI-- 104
Query 100 RGDAVVLLSPLS 111
RG+ VV+L +
Sbjct 105 RGENVVMLGEVD 116
> cel:C52E4.3 snr-4; Small Nuclear Ribonucleoprotein family member
(snr-4); K11096 small nuclear ribonucleoprotein D2
Length=118
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query 33 PLDIARLSVE--EKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKT 90
PL I SV+ +V + CR ++L G + ++D H N+VL + +E T V K
Sbjct 28 PLSILTNSVKNNHQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKTGKGKKKA 87
Query 91 V-----RKLPLIFVRGDAVVLL--SPLS 111
R + +F+RGD+V+L+ +PL+
Sbjct 88 KSVAKDRFISKMFLRGDSVILVVKNPLA 115
> pfa:PFB0865w small nuclear ribonucleoprotein, putative; K11096
small nuclear ribonucleoprotein D2
Length=101
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query 44 KVFVKCRGERQLKGTLHSYDVHLNLVLADAEETL--TVVDDATNKLSKTVRKLPLIFVRG 101
+V + CR R++ G + ++D H NL+L E V D K R + ++F+RG
Sbjct 31 QVLINCRNNRKILGRVKAFDRHCNLLLTGVREIWVEVVKDKKKKKKINKDRYISILFLRG 90
Query 102 DAVVLL 107
D+V+L+
Sbjct 91 DSVILI 96
> ath:AT5G44500 small nuclear ribonucleoprotein associated protein
B, putative / snRNP-B, putative / Sm protein B, putative;
K11086 small nuclear ribonucleoprotein B and B'
Length=254
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query 53 RQLKGTLHSYDVHLNLVLADAEETLTV----VDDATNKLSKTVRKLPLIFVRGDAVVLLS 108
RQL G ++D H+NLVL D EE + + TN+ + R L L+ +RG+ V+ ++
Sbjct 25 RQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREERRTLGLVLLRGEEVISMT 84
> tpv:TP02_0362 small nuclear ribonucleoprotein B; K11086 small
nuclear ribonucleoprotein B and B'
Length=155
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query 41 VEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTVRKLPLIFVR 100
++ V V + R+ GTL +YD ++NLVL+D EE + N+ ++ R L + +R
Sbjct 12 LQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNR-TEVKRTLGFVLLR 70
Query 101 GDAVV 105
G+ +V
Sbjct 71 GENIV 75
> dre:550244 snrpd2, im:6908977, si:dkey-113g17.2, zgc:110732;
small nuclear ribonucleoprotein D2 polypeptide; K11096 small
nuclear ribonucleoprotein D2
Length=118
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 9/89 (10%)
Query 33 PLDIARLSVEE--KVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKT 90
PL + SV+ +V + CR ++L G + ++D H N+VL + +E T V + K+
Sbjct 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query 91 V-----RKLPLIFVRGDA--VVLLSPLST 112
R + +F+RGD+ VVL +PL T
Sbjct 88 KPVNKDRYISKMFLRGDSVIVVLRNPLIT 116
> mmu:545531 Gm5848, EG545531; predicted pseudogene 5848
Length=118
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query 33 PLDIARLSVEE--KVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKT 90
PL + SV+ +V + CR +++L G + ++D H N+VL + +E T V ++ K+
Sbjct 28 PLSVLSQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSSKGKKKS 87
Query 91 --VRK---LPLIFVRGDAVVLL 107
V K + IF+RGD+V+++
Sbjct 88 KPVNKDCYISKIFLRGDSVIVV 109
> ath:AT5G48870 SAD1; SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT
1); RNA binding; K12624 U6 snRNA-associated Sm-like protein
LSm5
Length=88
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query 33 PLDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTVR 92
P ++ + K++V +G+++L G L +DV++N+VL D E + + V
Sbjct 10 PSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAE------GRRVT 63
Query 93 KLPLIFVRGDAVVLLSP 109
KL I + G+ + +L P
Sbjct 64 KLDQILLNGNNIAILVP 80
> cel:F28F8.3 lsm-5; LSM Sm-like protein family member (lsm-5);
K12624 U6 snRNA-associated Sm-like protein LSm5
Length=91
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query 33 PLDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTVR 92
PL++ + K++V + ++++ GTL +D ++N+VL D E D K +
Sbjct 14 PLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTAD------GKRMT 67
Query 93 KLPLIFVRGDAVVLLSP 109
KL I + G+ + +L P
Sbjct 68 KLDTILLNGNHITMLVP 84
> bbo:BBOV_III006010 17.m07530; Sm domain containing protein;
K11086 small nuclear ribonucleoprotein B and B'
Length=159
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query 41 VEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTV-RKLPLIFV 99
++ +V V + R+ GT ++D H+NLVLAD EE +K + R L I +
Sbjct 12 LQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQKVELKRTLGFIML 71
Query 100 RGDAVVLLS 108
RG+ +V +
Sbjct 72 RGENIVSFT 80
> ath:AT4G20440 smB; smB (small nuclear ribonucleoprotein associated
protein B); K11086 small nuclear ribonucleoprotein B
and B'
Length=257
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 3/59 (5%)
Query 53 RQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKT---VRKLPLIFVRGDAVVLLS 108
RQL G ++D H+NLVL D EE + K+++ R L L+ +RG+ V+ ++
Sbjct 25 RQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEEREDRRTLGLVLLRGEEVISMT 83
> mmu:107686 Snrpd2, 1810009A06Rik, MGC62953, SMD2; small nuclear
ribonucleoprotein D2; K11096 small nuclear ribonucleoprotein
D2
Length=118
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query 33 PLDIARLSVEE--KVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKT 90
PL + SV+ +V + CR ++L G + ++D H N+VL + +E T V + K+
Sbjct 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query 91 V-----RKLPLIFVRGDA--VVLLSPL 110
R + +F+RGD+ VVL +PL
Sbjct 88 KPVNKDRYISKMFLRGDSVIVVLRNPL 114
> hsa:6633 SNRPD2, SMD2, SNRPD1, Sm-D2; small nuclear ribonucleoprotein
D2 polypeptide 16.5kDa; K11096 small nuclear ribonucleoprotein
D2
Length=118
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query 33 PLDIARLSVEE--KVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKT 90
PL + SV+ +V + CR ++L G + ++D H N+VL + +E T V + K+
Sbjct 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query 91 V-----RKLPLIFVRGDA--VVLLSPL 110
R + +F+RGD+ VVL +PL
Sbjct 88 KPVNKDRYISKMFLRGDSVIVVLRNPL 114
> xla:100381103 snrpd2, sm-d2, smd2, snrpd1; small nuclear ribonucleoprotein
D2 polypeptide 16.5kDa; K11096 small nuclear
ribonucleoprotein D2
Length=118
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 9/87 (10%)
Query 33 PLDIARLSVEE--KVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKT 90
PL + SV+ +V + CR ++L G + ++D H N+VL + +E T V + K+
Sbjct 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query 91 V-----RKLPLIFVRGDA--VVLLSPL 110
R + +F+RGD+ VVL +PL
Sbjct 88 KPVNKDRYISKMFLRGDSVIVVLRNPL 114
> cpv:cgd1_2910 hypothetical protein ; K11086 small nuclear ribonucleoprotein
B and B'
Length=139
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query 41 VEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTVRKLPLIFVR 100
+ ++ V + +R + G L ++D H+NLVL+D +E V +K K R L LI +R
Sbjct 5 INYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEESKELK--RSLGLIMLR 62
Query 101 GDAVVLL 107
G+ +V
Sbjct 63 GENIVTF 69
> mmu:100043618 Gm10120; small nuclear ribonucleoprotein D2 pseudogene
Length=118
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 9/87 (10%)
Query 33 PLDIARLSVEE--KVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKT 90
PL + SV+ +V + CR ++L G + ++D H N+VL + +E T V + K+
Sbjct 28 PLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKS 87
Query 91 V-----RKLPLIFVRGD--AVVLLSPL 110
R + +F+RGD VVL +PL
Sbjct 88 KPVNKDRYISKMFLRGDLVIVVLRNPL 114
> xla:779307 snrpg, MGC154809; small nuclear ribonucleoprotein
polypeptide G; K11099 small nuclear ribonucleoprotein G
Length=76
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 42/70 (60%), Gaps = 9/70 (12%)
Query 41 VEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTVRKLPLIFVR 100
+++K+ +K G RQ++G L +D +NLVL ++ E + + N+ S + ++ +R
Sbjct 13 MDKKLSLKINGGRQVQGILRGFDPFMNLVLDESTE----ISGSGNQNS-----IGMVVIR 63
Query 101 GDAVVLLSPL 110
G+++++L L
Sbjct 64 GNSIIMLEAL 73
> sce:YER146W LSM5; Lsm (Like Sm) protein; part of heteroheptameric
complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic
Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex
part of U6 snRNP and possibly involved in processing tRNA,
snoRNA, and rRNA; K12624 U6 snRNA-associated Sm-like protein
LSm5
Length=93
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query 33 PLDIARLSVEEKVFVKCRGERQLKGTLHSYDVHLNLVLADAEETLTVVDDATNKLSKTVR 92
PL++ ++ +KV + + R+ +GTL +D +N++L DA E L +D + K ++
Sbjct 8 PLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRN-EKVMQ 66
Query 93 KLPLIFVRGDAVVLLSP 109
+ + G+ + +L P
Sbjct 67 HHGRMLLSGNNIAILVP 83
Lambda K H
0.317 0.133 0.368
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2057481480
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40