bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_3604_orf1
Length=215
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_023390 sec63 domain-containing DEAD/DEAH box helica... 393 3e-109
dre:799690 fb63a09; wu:fb63a09 (EC:3.6.4.13); K12854 pre-mRNA-... 311 9e-85
hsa:23020 SNRNP200, ASCC3L1, BRR2, FLJ11521, HELIC2, RP33, U5-... 309 5e-84
mmu:320632 Snrnp200, A330064G03Rik, Ascc3l1, BC011390, HELIC2,... 309 6e-84
hsa:652147 u5 small nuclear ribonucleoprotein 200 kDa helicase... 308 1e-83
ath:AT2G42270 U5 small nuclear ribonucleoprotein helicase, put... 282 7e-76
ath:AT1G20960 emb1507 (embryo defective 1507); ATP binding / A... 281 9e-76
bbo:BBOV_III000950 17.m07111; sec63 domain containing protein ... 265 1e-70
cel:Y46G5A.4 hypothetical protein; K12854 pre-mRNA-splicing he... 258 2e-68
pfa:PFD1060w U5 small nuclear ribonucleoprotein-specific prote... 204 2e-52
sce:YER172C BRR2, PRP44, RSS1, SLT22, SNU246; Brr2p (EC:3.6.1.... 200 4e-51
tpv:TP03_0747 ATP-dependent RNA helicase; K12854 pre-mRNA-spli... 192 7e-49
mmu:77987 Ascc3, ASC1p200, B630009I04Rik, BC023451, D430001L07... 152 6e-37
ath:AT5G61140 DEAD box RNA helicase, putative; K01529 [EC:3.6... 152 1e-36
hsa:10973 ASCC3, ASC1p200, DJ467N11.1, HELIC1, MGC26074, RNAH,... 147 3e-35
sce:YGR271W SLH1; Putative RNA helicase related to Ski2p, invo... 142 1e-33
cel:Y54E2A.6 hypothetical protein; K01529 [EC:3.6.1.-] 111 2e-24
dre:100332599 mutagen-sensitive 308-like 101 2e-21
cpv:cgd5_2960 U5snrp Brr2 SFII RNA helicase (sec63 and the sec... 98.6 2e-20
tgo:TGME49_049810 activating signal cointegrator 1 complex sub... 75.5 1e-13
xla:100158290 snrnp200, ascc3l1; small nuclear ribonucleoprote... 69.7 8e-12
tpv:TP01_0582 RNA helicase 54.3 3e-07
pfa:PF14_0370 DEAD/DEAH box helicase, putative; K01509 adenosi... 50.1 5e-06
cpv:cgd2_2770 U5 small nuclear ribonucleoprotein 200kDA helica... 47.4 4e-05
bbo:BBOV_I001530 19.m02171; helicase 44.7 2e-04
dre:557052 hfm1, si:ch211-83f14.5; HFM1, ATP-dependent DNA hel... 42.4 0.001
hsa:164045 HFM1, FLJ36760, FLJ39011, MER3, MGC163397, RP11-539... 40.0 0.007
mmu:330149 Hfm1, A330009G12Rik, Gm1046, Sec63d1; HFM1, ATP-dep... 33.9 0.43
bbo:BBOV_IV010770 23.m05766; hypothetical protein 31.6 2.0
dre:664698 nefl, MGC136626, zgc:136626; neurofilament, light p... 31.6 2.3
cel:Y63D3A.6 dnj-29; DNaJ domain (prokaryotic heat shock prote... 30.4 5.0
sce:YLR422W Protein of unknown function with similarity to hum... 30.0 6.6
> tgo:TGME49_023390 sec63 domain-containing DEAD/DEAH box helicase,
putative ; K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=2198
Score = 393 bits (1009), Expect = 3e-109, Method: Compositional matrix adjust.
Identities = 188/212 (88%), Positives = 202/212 (95%), Gaps = 0/212 (0%)
Query 4 RRHLKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSPDEPSSKVNV 63
+H+KPTLSDIELLRLFSLSSEFKYMPVREEEK+ELQRLMERVPIPVKGSPDE SSKVNV
Sbjct 1056 NQHMKPTLSDIELLRLFSLSSEFKYMPVREEEKVELQRLMERVPIPVKGSPDETSSKVNV 1115
Query 64 LLQAYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGR 123
LLQAYISKLKLEG AMMADMVYVQQSA+RIMRAIF+ICLRRGWA LA+RAL+ C E+ R
Sbjct 1116 LLQAYISKLKLEGLAMMADMVYVQQSANRIMRAIFEICLRRGWAMLALRALRFCKEIDRR 1175
Query 124 MWSTMTPLRQFKVLPEELLRKIEKKDLPFDRYYDLTSTEIGELVRVPKMGKLLHRLIHSF 183
MWS+MTPLRQFKVLPEELLRKIEKKDLPF+RYYDL+STEIGELVRVPKMGKLLHRLIH F
Sbjct 1176 MWSSMTPLRQFKVLPEELLRKIEKKDLPFERYYDLSSTEIGELVRVPKMGKLLHRLIHQF 1235
Query 184 PKLELAAFVQPLSRSCLVVELTITPDFQWDPK 215
PKLELAAFVQPL+R+CLVVELTITPDFQW+ K
Sbjct 1236 PKLELAAFVQPLTRTCLVVELTITPDFQWEAK 1267
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 85/162 (52%), Gaps = 6/162 (3%)
Query 4 RRHLKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSPDE---PSSK 60
R L PT LL + + SSEF +P+R E+ L+ L +R+ + + + ++ PS+K
Sbjct 1896 NRSLTPTCKRRALLEILAASSEFSTLPLRPGEEGTLKGLAQRLGVRLPANSEDLNKPSTK 1955
Query 61 VNVLLQAYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEV 120
+LL A+ ++ L ++AD + + + R++ A+ D+ GW A+ A+++C V
Sbjct 1956 ALILLYAHFNRTPLPS-DLIADQKVLLEPSIRLLHALVDVISSNGWLVPALSAMEICQAV 2014
Query 121 QGRMWSTMTPLRQFKVLPEELLRKIEKKDLPFDRYYDLTSTE 162
M + + L+Q +EL+ + K++ D +DL + +
Sbjct 2015 VQAMTTACSALKQLPHFTDELVE--QAKEMGVDDIFDLMNMD 2054
> dre:799690 fb63a09; wu:fb63a09 (EC:3.6.4.13); K12854 pre-mRNA-splicing
helicase BRR2 [EC:3.6.4.13]
Length=2134
Score = 311 bits (798), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 145/209 (69%), Positives = 177/209 (84%), Gaps = 0/209 (0%)
Query 7 LKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSPDEPSSKVNVLLQ 66
LKPTLS+IEL R+FSLSSEF+ + VREEEKLELQ+L+ERVPIPVK S +EPS+K+NVLLQ
Sbjct 1002 LKPTLSEIELFRVFSLSSEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQ 1061
Query 67 AYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWS 126
AYIS+LKLEGFA+MADMVYV QSA R+MRAIF+I L RGWAQL + L LC + RMW
Sbjct 1062 AYISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLSRGWAQLTDKTLNLCKMIDKRMWQ 1121
Query 127 TMTPLRQFKVLPEELLRKIEKKDLPFDRYYDLTSTEIGELVRVPKMGKLLHRLIHSFPKL 186
+M+PLRQF+ LPEE+++KIEKK+ PF+R YDL EIGEL+R+PKMGK +H+ +H FPKL
Sbjct 1122 SMSPLRQFRKLPEEVIKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKL 1181
Query 187 ELAAFVQPLSRSCLVVELTITPDFQWDPK 215
+LA +QP++RS L VELTITPDFQWD K
Sbjct 1182 DLAVHLQPITRSTLKVELTITPDFQWDDK 1210
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 94/179 (52%), Gaps = 8/179 (4%)
Query 16 LLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSP-DEPSSKVNVLLQAYISKLKL 74
L+ + S ++E+K +P+R E L++L ++VP + ++P K N+LLQA++S+++L
Sbjct 1841 LIEIISNAAEYKNIPIRHHEDTLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQL 1900
Query 75 EGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWSTMTPLRQF 134
+ +D + A R+++A D+ GW A+ A++L V MWS + LRQ
Sbjct 1901 SA-ELQSDTEEILSKAVRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLRQL 1959
Query 135 KVLPEELLRKIEKKDLPFDRYYDLTSTEIGELVRVPKMGKL----LHRLIHSFPKLELA 189
EL+++ K + + +D+ E + + ++ + + R + +P +EL+
Sbjct 1960 PHFTSELIKRCTDKGV--ESIFDIMEMEDEDRTGLLQLSDVQVADVARFCNRYPNIELS 2016
> hsa:23020 SNRNP200, ASCC3L1, BRR2, FLJ11521, HELIC2, RP33, U5-200KD;
small nuclear ribonucleoprotein 200kDa (U5) (EC:3.6.4.13);
K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=2136
Score = 309 bits (791), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 145/209 (69%), Positives = 176/209 (84%), Gaps = 0/209 (0%)
Query 7 LKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSPDEPSSKVNVLLQ 66
LKPTLS+IEL R+FSLSSEFK + VREEEKLELQ+L+ERVPIPVK S +EPS+K+NVLLQ
Sbjct 1005 LKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQ 1064
Query 67 AYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWS 126
A+IS+LKLEGFA+MADMVYV QSA R+MRAIF+I L RGWAQL + L LC + RMW
Sbjct 1065 AFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQ 1124
Query 127 TMTPLRQFKVLPEELLRKIEKKDLPFDRYYDLTSTEIGELVRVPKMGKLLHRLIHSFPKL 186
+M PLRQF+ LPEE+++KIEKK+ PF+R YDL EIGEL+R+PKMGK +H+ +H FPKL
Sbjct 1125 SMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKL 1184
Query 187 ELAAFVQPLSRSCLVVELTITPDFQWDPK 215
EL+ +QP++RS L VELTITPDFQWD K
Sbjct 1185 ELSVHLQPITRSTLKVELTITPDFQWDEK 1213
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Query 16 LLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSP-DEPSSKVNVLLQAYISKLKL 74
L+ + S ++E++ +P+R E L++L ++VP + ++P K N+LLQA++S+++L
Sbjct 1845 LIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQL 1904
Query 75 EGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWSTMTPLRQF 134
+ +D + A R+++A D+ GW A+ A++L V MWS + L+Q
Sbjct 1905 SA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQL 1963
Query 135 KVLPEELLRKIEKKDL 150
E +++ K +
Sbjct 1964 PHFTSEHIKRCTDKGV 1979
> mmu:320632 Snrnp200, A330064G03Rik, Ascc3l1, BC011390, HELIC2,
KIAA0788, U5-200-KD, U5-200KD; small nuclear ribonucleoprotein
200 (U5) (EC:3.6.4.13); K12854 pre-mRNA-splicing helicase
BRR2 [EC:3.6.4.13]
Length=2136
Score = 309 bits (791), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 145/209 (69%), Positives = 176/209 (84%), Gaps = 0/209 (0%)
Query 7 LKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSPDEPSSKVNVLLQ 66
LKPTLS+IEL R+FSLSSEFK + VREEEKLELQ+L+ERVPIPVK S +EPS+K+NVLLQ
Sbjct 1005 LKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQ 1064
Query 67 AYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWS 126
A+IS+LKLEGFA+MADMVYV QSA R+MRAIF+I L RGWAQL + L LC + RMW
Sbjct 1065 AFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQ 1124
Query 127 TMTPLRQFKVLPEELLRKIEKKDLPFDRYYDLTSTEIGELVRVPKMGKLLHRLIHSFPKL 186
+M PLRQF+ LPEE+++KIEKK+ PF+R YDL EIGEL+R+PKMGK +H+ +H FPKL
Sbjct 1125 SMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKL 1184
Query 187 ELAAFVQPLSRSCLVVELTITPDFQWDPK 215
EL+ +QP++RS L VELTITPDFQWD K
Sbjct 1185 ELSVHLQPITRSTLKVELTITPDFQWDEK 1213
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Query 16 LLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSP-DEPSSKVNVLLQAYISKLKL 74
L+ + S ++E++ +P+R E L++L ++VP + ++P K N+LLQA++S+++L
Sbjct 1845 LIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQL 1904
Query 75 EGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWSTMTPLRQF 134
+ +D + A R+++A D+ GW A+ A++L V MWS + L+Q
Sbjct 1905 SA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQL 1963
Query 135 KVLPEELLRKIEKKDL 150
E +++ K +
Sbjct 1964 PHFTSEHIKRCTDKGV 1979
> hsa:652147 u5 small nuclear ribonucleoprotein 200 kDa helicase-like
Length=1700
Score = 308 bits (788), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 145/209 (69%), Positives = 176/209 (84%), Gaps = 0/209 (0%)
Query 7 LKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSPDEPSSKVNVLLQ 66
LKPTLS+IEL R+FSLSSEFK + VREEEKLELQ+L+ERVPIPVK S +EPS+K+NVLLQ
Sbjct 569 LKPTLSEIELFRVFSLSSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQ 628
Query 67 AYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWS 126
A+IS+LKLEGFA+MADMVYV QSA R+MRAIF+I L RGWAQL + L LC + RMW
Sbjct 629 AFISQLKLEGFALMADMVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQ 688
Query 127 TMTPLRQFKVLPEELLRKIEKKDLPFDRYYDLTSTEIGELVRVPKMGKLLHRLIHSFPKL 186
+M PLRQF+ LPEE+++KIEKK+ PF+R YDL EIGEL+R+PKMGK +H+ +H FPKL
Sbjct 689 SMCPLRQFRKLPEEVVKKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKL 748
Query 187 ELAAFVQPLSRSCLVVELTITPDFQWDPK 215
EL+ +QP++RS L VELTITPDFQWD K
Sbjct 749 ELSVHLQPITRSTLKVELTITPDFQWDEK 777
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 74/136 (54%), Gaps = 2/136 (1%)
Query 16 LLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSP-DEPSSKVNVLLQAYISKLKL 74
L+ + S ++E++ +P+R E L++L ++VP + ++P K N+LLQA++S+++L
Sbjct 1409 LIEIISNAAEYENIPIRHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQL 1468
Query 75 EGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWSTMTPLRQF 134
+ +D + A R+++A D+ GW A+ A++L V MWS + LR+
Sbjct 1469 SA-ELQSDTEEILSKAIRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSEDSYLRRL 1527
Query 135 KVLPEELLRKIEKKDL 150
P L ++ K +
Sbjct 1528 PPFPSGLFKRCTDKGV 1543
> ath:AT2G42270 U5 small nuclear ribonucleoprotein helicase, putative
Length=2172
Score = 282 bits (721), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 133/212 (62%), Positives = 172/212 (81%), Gaps = 0/212 (0%)
Query 4 RRHLKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSPDEPSSKVNV 63
+LKPT++DIEL RLFSLS EFKY+ VR++EK+EL +L++RVPIPVK + ++PS+K+NV
Sbjct 1027 NENLKPTMNDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPVKETLEDPSAKINV 1086
Query 64 LLQAYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGR 123
LLQ YISKLKLEG ++ +DMVY+ QSA R++RAIF+I L+RGWAQL+ +AL L V R
Sbjct 1087 LLQVYISKLKLEGLSLTSDMVYITQSAGRLLRAIFEIVLKRGWAQLSQKALNLSKMVGKR 1146
Query 124 MWSTMTPLRQFKVLPEELLRKIEKKDLPFDRYYDLTSTEIGELVRVPKMGKLLHRLIHSF 183
MWS TPL QF +P+E+L K+EK DL ++RYYDL+S E+GEL+ PKMG+ LH+ IH F
Sbjct 1147 MWSVQTPLWQFPGIPKEILMKLEKNDLVWERYYDLSSQELGELICNPKMGRPLHKYIHQF 1206
Query 184 PKLELAAFVQPLSRSCLVVELTITPDFQWDPK 215
PKL+LAA VQP+SRS L VELT+TPDF WD K
Sbjct 1207 PKLKLAAHVQPISRSVLQVELTVTPDFHWDDK 1238
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 86/180 (47%), Gaps = 7/180 (3%)
Query 16 LLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKG-SPDEPSSKVNVLLQAYISKLKL 74
LL + + +SE+ +P+R E+ ++RL+ + +P K + LLQA+ S+ K+
Sbjct 1873 LLEILTSASEYDLIPIRPGEEDAVRRLINHQRFSFQNPRCTDPRVKTSALLQAHFSRQKI 1932
Query 75 EGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWSTMTPLRQF 134
G +M D V SA+R+++A+ D+ G LA+ A+++ V MW + L Q
Sbjct 1933 SGNLVM-DQCEVLLSATRLLQAMVDVISSNGCLNLALLAMEVSQMVTQGMWDRDSMLLQL 1991
Query 135 KVLPEELLRKI-EKKDLPFDRYYDLTSTEIGELVRVPKMGKL----LHRLIHSFPKLELA 189
++L ++ E + +DL E + + +M + R + FP ++L
Sbjct 1992 PHFTKDLAKRCHENPGNNIETIFDLVEMEDDKRQELLQMSDAQLLDIARFCNRFPNIDLT 2051
> ath:AT1G20960 emb1507 (embryo defective 1507); ATP binding /
ATP-dependent helicase/ helicase/ nucleic acid binding / nucleoside-triphosphatase/
nucleotide binding; K12854 pre-mRNA-splicing
helicase BRR2 [EC:3.6.4.13]
Length=2171
Score = 281 bits (720), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 129/212 (60%), Positives = 172/212 (81%), Gaps = 0/212 (0%)
Query 4 RRHLKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSPDEPSSKVNV 63
HLKPT+ DI+L RLFSLS EFKY+ VR++EK+EL +L++RVPIP+K + +EPS+K+NV
Sbjct 1026 NEHLKPTMGDIDLYRLFSLSDEFKYVTVRQDEKMELAKLLDRVPIPIKETLEEPSAKINV 1085
Query 64 LLQAYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGR 123
LLQAYIS+LKLEG ++ +DMVY+ QSA R++RA+++I L+RGWAQLA +AL L V R
Sbjct 1086 LLQAYISQLKLEGLSLTSDMVYITQSAGRLVRALYEIVLKRGWAQLAEKALNLSKMVGKR 1145
Query 124 MWSTMTPLRQFKVLPEELLRKIEKKDLPFDRYYDLTSTEIGELVRVPKMGKLLHRLIHSF 183
MWS TPLRQF L ++L ++EKKDL ++RYYDL++ E+GEL+R PKMGK LH+ IH F
Sbjct 1146 MWSVQTPLRQFHGLSNDILMQLEKKDLVWERYYDLSAQELGELIRSPKMGKPLHKFIHQF 1205
Query 184 PKLELAAFVQPLSRSCLVVELTITPDFQWDPK 215
PK+ L+A VQP++R+ L VELT+TPDF WD K
Sbjct 1206 PKVTLSAHVQPITRTVLNVELTVTPDFLWDEK 1237
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 85/180 (47%), Gaps = 7/180 (3%)
Query 16 LLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKG-SPDEPSSKVNVLLQAYISKLKL 74
LL + + +SE+ +P+R E+ ++RL+ + +P K N LLQA+ S+ +
Sbjct 1872 LLEILTSASEYDMIPIRPGEEDTVRRLINHQRFSFENPKCTDPHVKANALLQAHFSRQNI 1931
Query 75 EGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWSTMTPLRQF 134
G M D V SA+R+++A+ D+ GW LA+ A+++ V MW + L Q
Sbjct 1932 GGNLAM-DQRDVLLSATRLLQAMVDVISSNGWLNLALLAMEVSQMVTQGMWERDSMLLQL 1990
Query 135 KVLPEELLRKI-EKKDLPFDRYYDLTSTEIGELVRVPKMGKL----LHRLIHSFPKLELA 189
++L ++ E + +DL E E + KM + R + FP ++L
Sbjct 1991 PHFTKDLAKRCQENPGKNIETVFDLVEMEDEERQELLKMSDAQLLDIARFCNRFPNIDLT 2050
> bbo:BBOV_III000950 17.m07111; sec63 domain containing protein
(EC:3.6.1.-); K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=2133
Score = 265 bits (676), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 120/210 (57%), Positives = 163/210 (77%), Gaps = 0/210 (0%)
Query 6 HLKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSPDEPSSKVNVLL 65
+LKP LSD +LL++F+ S+EF+Y+PVR+EE++EL LME+VPIP++G E SSKV VLL
Sbjct 1006 NLKPDLSDPDLLKVFAASAEFRYIPVRDEERVELSGLMEKVPIPIRGHGQESSSKVAVLL 1065
Query 66 QAYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMW 125
Q+YIS+ LEG+A++++M ++ Q+A RI+RA+++I L W+QLA R C V+ RMW
Sbjct 1066 QSYISRFDLEGYALVSEMTFITQNAGRILRALYEIALTNSWSQLAQRLFDFCKMVERRMW 1125
Query 126 STMTPLRQFKVLPEELLRKIEKKDLPFDRYYDLTSTEIGELVRVPKMGKLLHRLIHSFPK 185
S M PLRQFK LPEEL+ K+E+ D +DRYYDL+S E+GEL R PK+GK LHRL+H P+
Sbjct 1126 SVMLPLRQFKSLPEELILKLERNDFTWDRYYDLSSVELGELCRQPKLGKTLHRLVHLVPR 1185
Query 186 LELAAFVQPLSRSCLVVELTITPDFQWDPK 215
LEL FVQPL+R L VE+ I+PDFQWD +
Sbjct 1186 LELQVFVQPLTRDVLRVEVGISPDFQWDQR 1215
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 14/114 (12%)
Query 7 LKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSPDEPSSKVNVLLQ 66
+ P ++ L++L S + EF + R E++ + L EP +KV+ LL
Sbjct 1853 VTPDMTKGSLIQLVSTAEEFVDIKPRPGERIGTKAL-------------EPDNKVSELLI 1899
Query 67 AYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEV 120
A++ + L + +D+ V + ++ A+ D+ GW + A+QL +
Sbjct 1900 AHMQRAMLTN-DLQSDLCLVLERIGALLCALVDVLSSNGWLGPVLLAMQLSQRI 1952
> cel:Y46G5A.4 hypothetical protein; K12854 pre-mRNA-splicing
helicase BRR2 [EC:3.6.4.13]
Length=2145
Score = 258 bits (658), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 119/209 (56%), Positives = 158/209 (75%), Gaps = 0/209 (0%)
Query 7 LKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSPDEPSSKVNVLLQ 66
L T SDI+L R+FS+SSEFK + VR+EEKLELQ++ E PIP+K + DE S+K NVLLQ
Sbjct 998 LVETCSDIDLFRIFSMSSEFKLLSVRDEEKLELQKMAEHAPIPIKENLDEASAKTNVLLQ 1057
Query 67 AYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWS 126
AYIS+LKLEGFA+ ADMV+V QSA R+ RA+F+I L RGWA LA + L LC V R W
Sbjct 1058 AYISQLKLEGFALQADMVFVAQSAGRLFRALFEIVLWRGWAGLAQKVLTLCKMVTQRQWG 1117
Query 127 TMTPLRQFKVLPEELLRKIEKKDLPFDRYYDLTSTEIGELVRVPKMGKLLHRLIHSFPKL 186
++ PL QFK +P E++R I+KK+ FDR YDL ++G+L+++PKMGK L + I FPKL
Sbjct 1118 SLNPLHQFKKIPSEVVRSIDKKNYSFDRLYDLDQHQLGDLIKMPKMGKPLFKFIRQFPKL 1177
Query 187 ELAAFVQPLSRSCLVVELTITPDFQWDPK 215
E+ +QP++R+ + +ELTITPDF+WD K
Sbjct 1178 EMTTLIQPITRTTMRIELTITPDFKWDEK 1206
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 89/185 (48%), Gaps = 18/185 (9%)
Query 16 LLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSP-DEPSSKVNVLLQAYISKLKL 74
L+ + S SSEF +P+R +E + L++L ER+P +K +P KVN+L+ A++S++KL
Sbjct 1844 LIEIISASSEFGNVPMRHKEDVILRQLAERLPGQLKNQKFTDPHVKVNLLIHAHLSRVKL 1903
Query 75 EGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWSTMTPLRQF 134
+ D + A R+++A D+ GW AI A++L + M+S L+Q
Sbjct 1904 TA-ELNKDTELIVLRACRLVQACVDVLSSNGWLSPAIHAMELSQMLTQAMYSNEPYLKQL 1962
Query 135 KVLPEELLRKIEKK---------DLPFDRYYDLTSTEIGELVRVPKMGKLLHRLIHSFPK 185
LL + + K +L D D+ E EL V R + +P
Sbjct 1963 PHCSAALLERAKAKEVTSVFELLELENDDRSDILQMEGAELADVA-------RFCNHYPS 2015
Query 186 LELAA 190
+E+A
Sbjct 2016 IEVAT 2020
> pfa:PFD1060w U5 small nuclear ribonucleoprotein-specific protein,
putative; K01509 adenosinetriphosphatase [EC:3.6.1.3]
Length=2874
Score = 204 bits (518), Expect = 2e-52, Method: Composition-based stats.
Identities = 94/211 (44%), Positives = 145/211 (68%), Gaps = 0/211 (0%)
Query 5 RHLKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSPDEPSSKVNVL 64
+ L ++I+LL++F++S+EFK + +R+EEK EL +ME++PIPVK S + P +K+N+L
Sbjct 1401 KKLNKYTNEIDLLKIFTMSNEFKNIFIRDEEKTELSIIMEKLPIPVKESINIPYTKINIL 1460
Query 65 LQAYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRM 124
LQ Y+S + L G+ + ADMVY+ Q+A RI R+ F+I L++ L L+ C ++ RM
Sbjct 1461 LQLYLSNIILNGYIINADMVYIHQNALRIFRSFFEISLKKNSYNLIKLTLKFCKMIERRM 1520
Query 125 WSTMTPLRQFKVLPEELLRKIEKKDLPFDRYYDLTSTEIGELVRVPKMGKLLHRLIHSFP 184
WSTMTPLRQF +L EL+R IEKK++ F Y + E + + K+ K +++L+H FP
Sbjct 1521 WSTMTPLRQFGLLSTELIRIIEKKNITFKNYLTMNLNEYITIFKNKKIAKNIYKLVHHFP 1580
Query 185 KLELAAFVQPLSRSCLVVELTITPDFQWDPK 215
KLEL A++QP++ L V+L I PDF ++PK
Sbjct 1581 KLELNAYIQPINHKILKVDLNIAPDFIYNPK 1611
> sce:YER172C BRR2, PRP44, RSS1, SLT22, SNU246; Brr2p (EC:3.6.1.-);
K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=2163
Score = 200 bits (508), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 92/211 (43%), Positives = 138/211 (65%), Gaps = 1/211 (0%)
Query 4 RRHLKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSPDEPSSKVNV 63
R L + I+L R+FS+S EFKY+ VR EEK EL++L+E+ PIP++ D+P +KVNV
Sbjct 1019 NRELDEHTTQIDLFRIFSMSEEFKYVSVRYEEKRELKQLLEKAPIPIREDIDDPLAKVNV 1078
Query 64 LLQAYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGR 123
LLQ+Y S+LK EGFA+ +D+V++ Q+A R++RA+F+ICL+RGW L LC +
Sbjct 1079 LLQSYFSQLKFEGFALNSDIVFIHQNAGRLLRAMFEICLKRGWGHPTRMLLNLCKSATTK 1138
Query 124 MWSTMTPLRQFKVLPEELLRKIEKKDLPFDRYYDL-TSTEIGELVRVPKMGKLLHRLIHS 182
MW T PLRQFK P E+++++E +P+ Y L T E+G +R K GK ++ L+
Sbjct 1139 MWPTNCPLRQFKTCPVEVIKRLEASTVPWGDYLQLETPAEVGRAIRSEKYGKQVYDLLKR 1198
Query 183 FPKLELAAFVQPLSRSCLVVELTITPDFQWD 213
FPK+ + QP++RS + + I D+ WD
Sbjct 1199 FPKMSVTCNAQPITRSVMRFNIEIIADWIWD 1229
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 85/181 (46%), Gaps = 10/181 (5%)
Query 15 ELLRLFSLSSEFKYMPVREEEKLELQRLMERVPI--PVKGSPDEPSSKVNVLLQAYISKL 72
+L + S + EF+ +P+R+ ++ L +L +R+P+ P S S KV +LLQAY S+L
Sbjct 1878 NMLYVLSTAVEFESVPLRKGDRALLVKLSKRLPLRFPEHTSSGSVSFKVFLLLQAYFSRL 1937
Query 73 KLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWSTMTPLR 132
+L D+ + + ++ + DI G+ A A+ L + +W PLR
Sbjct 1938 ELP-VDFQNDLKDILEKVVPLINVVVDILSANGYLN-ATTAMDLAQMLIQGVWDVDNPLR 1995
Query 133 QFKVLPEELLRKIEKKDLPFDRYYDLTSTEIGE----LVRVPKMGKLLHRLIHSFPKLEL 188
Q ++L K K++ + YD+ + E E L + ++++P +EL
Sbjct 1996 QIPHFNNKILEKC--KEINVETVYDIMALEDEERDEILTLTDSQLAQVAAFVNNYPNVEL 2053
Query 189 A 189
Sbjct 2054 T 2054
> tpv:TP03_0747 ATP-dependent RNA helicase; K12854 pre-mRNA-splicing
helicase BRR2 [EC:3.6.4.13]
Length=2249
Score = 192 bits (488), Expect = 7e-49, Method: Composition-based stats.
Identities = 101/221 (45%), Positives = 149/221 (67%), Gaps = 12/221 (5%)
Query 7 LKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSPDEPSS------- 59
L+P L+D +LL +FS S EFKY+P REEE +ELQ+L +++PIP + +S
Sbjct 1048 LRPNLTDSDLLNIFSCSVEFKYIPTREEEIVELQQLQQQIPIPCSNANLTATSTINRVAG 1107
Query 60 -----KVNVLLQAYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRAL 114
K+++LLQAYIS+L L+G+A++++M Y+ Q+A RI+ A+F I L+R W+ L+I+
Sbjct 1108 IGGNNKISILLQAYISRLDLDGYALVSEMGYITQNAPRILTALFVISLKRCWSSLSIKLF 1167
Query 115 QLCNEVQGRMWSTMTPLRQFKVLPEELLRKIEKKDLPFDRYYDLTSTEIGELVRVPKMGK 174
C V+ RMW M PLR FK +P E++ K+EKKD+P+ RYYDL + E+GEL R K+GK
Sbjct 1168 NFCKMVESRMWLLMLPLRHFKTIPNEVVTKLEKKDIPWVRYYDLNAVELGELCRNQKLGK 1227
Query 175 LLHRLIHSFPKLELAAFVQPLSRSCLVVELTITPDFQWDPK 215
L++ +H PK+ L +VQPL+ + + V L I DF WD K
Sbjct 1228 SLYKFVHLVPKVNLQVYVQPLTCNRISVHLVIKRDFVWDYK 1268
> mmu:77987 Ascc3, ASC1p200, B630009I04Rik, BC023451, D430001L07Rik,
D630041L21, Helic1, RNAH; activating signal cointegrator
1 complex subunit 3; K01529 [EC:3.6.1.-]
Length=2198
Score = 152 bits (385), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 72/202 (35%), Positives = 121/202 (59%), Gaps = 1/202 (0%)
Query 15 ELLRLFSLSSEFKYMPVREEEKLELQRLMER-VPIPVKGSPDEPSSKVNVLLQAYISKLK 73
++ + S + EF + VREEE EL L+ + G + K+N+LLQ YIS+ +
Sbjct 1011 DIFAIVSKAEEFDQIKVREEEIEELDALLNNFCELSAPGGVENSYGKINILLQTYISRGE 1070
Query 74 LEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWSTMTPLRQ 133
++ F++++D YV Q+A+RI+RA+F+I LR+ W + R L L + R+W +PLRQ
Sbjct 1071 MDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQ 1130
Query 134 FKVLPEELLRKIEKKDLPFDRYYDLTSTEIGELVRVPKMGKLLHRLIHSFPKLELAAFVQ 193
F VLP +L ++E+K+L D+ D+ EIG ++ +G + + +H P + + A +Q
Sbjct 1131 FSVLPPHILTRLEEKNLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVTMEASIQ 1190
Query 194 PLSRSCLVVELTITPDFQWDPK 215
P++R+ L V L I PDF W+ +
Sbjct 1191 PITRTVLRVSLNIHPDFSWNDQ 1212
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
Query 7 LKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVK-GSPDEPSSKVNVLL 65
LKP S ELL + S + E+ +PVR E L + +PI + S D P +K ++LL
Sbjct 1837 LKPECSTEELLSILSDAEEYTDLPVRHNEDHTNNELAKCLPIELNPHSFDSPHTKAHLLL 1896
Query 66 QAYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEV-QGR 123
QA++S+ L D V A R+ +A+ D+ +GW + L V QGR
Sbjct 1897 QAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAASQGWLVTVLNITHLIQMVIQGR 1955
> ath:AT5G61140 DEAD box RNA helicase, putative; K01529 [EC:3.6.1.-]
Length=2146
Score = 152 bits (383), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 80/213 (37%), Positives = 127/213 (59%), Gaps = 23/213 (10%)
Query 7 LKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERV-PIPVKGSPDEPSSKVNVLL 65
LK +++ E++ + + SSEF+ + VREEE+ EL+ L P+ VKG P K+++L+
Sbjct 1032 LKRHMNESEIINMVAHSSEFENIVVREEEQHELETLARSCCPLEVKGGPSNKHGKISILI 1091
Query 66 QAYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMW 125
Q YIS+ ++ F++++D Y+ S +RIMRA+F+ICLR+GW ++ + L+ C V ++W
Sbjct 1092 QLYISRGSIDAFSLVSDASYISASLARIMRALFEICLRKGWCEMTLFMLEYCKAVDRQLW 1151
Query 126 STMTPLRQFKVLPEELLRKIEKKDLPFDR------YYDLTSTEIGELVRVPKMGKLLHRL 179
PLRQF ++DLP DR Y++ EIG L+R G R
Sbjct 1152 PHQHPLRQF------------ERDLPSDRRDDLDHLYEMEEKEIGALIRYNPGG----RH 1195
Query 180 IHSFPKLELAAFVQPLSRSCLVVELTITPDFQW 212
+ FP ++LAA V P++R+ L V+L ITP+F W
Sbjct 1196 LGYFPSIQLAATVSPITRTVLKVDLLITPNFIW 1228
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 1/122 (0%)
Query 6 HLKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSP-DEPSSKVNVL 64
++ P S L + + +SE+ +PVR E+ + L +RV PV + D+P K N+L
Sbjct 1851 NIGPDTSLEAFLHILAGASEYDELPVRHNEENYNKTLSDRVRYPVDNNHLDDPHVKANLL 1910
Query 65 LQAYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRM 124
QA+ S+L L D+ V + RI++A+ DIC GW ++ ++L V M
Sbjct 1911 FQAHFSQLALPISDYNTDLKSVLDQSIRILQAMIDICANSGWLSSSLTCMRLLQMVMQGM 1970
Query 125 WS 126
WS
Sbjct 1971 WS 1972
> hsa:10973 ASCC3, ASC1p200, DJ467N11.1, HELIC1, MGC26074, RNAH,
dJ121G13.4; activating signal cointegrator 1 complex subunit
3; K01529 [EC:3.6.1.-]
Length=2202
Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/202 (34%), Positives = 120/202 (59%), Gaps = 1/202 (0%)
Query 15 ELLRLFSLSSEFKYMPVREEEKLELQRLMER-VPIPVKGSPDEPSSKVNVLLQAYISKLK 73
++ + S + EF + VREEE EL L+ + G + K+N+LLQ YIS+ +
Sbjct 1010 DIFAIVSKAEEFDQIKVREEEIEELDTLLSNFCELSTPGGVENSYGKINILLQTYISRGE 1069
Query 74 LEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWSTMTPLRQ 133
++ F++++D YV Q+A+RI+RA+F+I LR+ W + R L L + R+W +PLRQ
Sbjct 1070 MDSFSLISDSAYVAQNAARIVRALFEIALRKRWPTMTYRLLNLSKVIDKRLWGWASPLRQ 1129
Query 134 FKVLPEELLRKIEKKDLPFDRYYDLTSTEIGELVRVPKMGKLLHRLIHSFPKLELAAFVQ 193
F +LP +L ++E+K L D+ D+ EIG ++ +G + + +H P + + A +Q
Sbjct 1130 FSILPPHILTRLEEKKLTVDKLKDMRKDEIGHILHHVNIGLKVKQCVHQIPSVMMEASIQ 1189
Query 194 PLSRSCLVVELTITPDFQWDPK 215
P++R+ L V L+I DF W+ +
Sbjct 1190 PITRTVLRVTLSIYADFTWNDQ 1211
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Query 7 LKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVK-GSPDEPSSKVNVLL 65
LKP S ELL + S + E+ +PVR E L + +PI S D P +K ++LL
Sbjct 1836 LKPECSTEELLSILSDAEEYTDLPVRHNEDHMNSELAKCLPIESNPHSFDSPHTKAHLLL 1895
Query 66 QAYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEV-QGR 123
QA++S+ L D V A R+ +A+ D+ +GW + L V QGR
Sbjct 1896 QAHLSRAMLPCPDYDTDTKTVLDQALRVCQAMLDVAANQGWLVTVLNITNLIQMVIQGR 1954
> sce:YGR271W SLH1; Putative RNA helicase related to Ski2p, involved
in translation inhibition of non-poly(A) mRNAs; required
for repressing propagation of dsRNA viruses (EC:3.6.1.-);
K01529 [EC:3.6.1.-]
Length=1967
Score = 142 bits (357), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/208 (35%), Positives = 121/208 (58%), Gaps = 2/208 (0%)
Query 9 PTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLM-ERVPIPVKGSPDEPSSKVNVLLQA 67
P ++ ++L + S+SSEF + REEE EL+RL E V + D P K NVLLQA
Sbjct 821 PRATEADVLSMISMSSEFDGIKFREEESKELKRLSDESVECQIGSQLDTPQGKANVLLQA 880
Query 68 YISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWST 127
YIS+ ++ A+ +D YV Q++ RI RA+F I + R W + + L +C ++ R+W+
Sbjct 881 YISQTRIFDSALSSDSNYVAQNSVRICRALFLIGVNRRWGKFSNVMLNICKSIEKRLWAF 940
Query 128 MTPLRQFKVLPEELLRKIEKKDLPFDRYYDLTSTEIGELVRVPKMGKLLHRLIHSFPKLE 187
PL QF LPE ++R+I + +L + E+GELV K G L++++ FPK+
Sbjct 941 DHPLCQFD-LPENIIRRIRDTKPSMEHLLELEADELGELVHNKKAGSRLYKILSRFPKIN 999
Query 188 LAAFVQPLSRSCLVVELTITPDFQWDPK 215
+ A + P++ + + + + + PDF WD +
Sbjct 1000 IEAEIFPITTNVMRIHIALGPDFVWDSR 1027
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 70/146 (47%), Gaps = 13/146 (8%)
Query 15 ELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGS-PDE-------PSSKVNVLLQ 66
E+LR SL+ E+ +PVR E + + + ++ V+ + DE P K +LLQ
Sbjct 1658 EVLRWLSLAVEYNELPVRGGEIIMNEEMSQQSRYSVESTFTDEFELPMWDPHVKTFLLLQ 1717
Query 67 AYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWS 126
A++S++ L + D V V + RI++A D+ G+ + +++ ++ W
Sbjct 1718 AHLSRVDLPIADYIQDTVSVLDQSLRILQAYIDVASELGYFHTVLTMIKMMQCIKQGYWY 1777
Query 127 TMTPLRQFKVLPEELLRKIEKKDLPF 152
P+ VLP LR+I KD F
Sbjct 1778 EDDPV---SVLPGLQLRRI--KDYTF 1798
> cel:Y54E2A.6 hypothetical protein; K01529 [EC:3.6.1.-]
Length=1798
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 117/208 (56%), Gaps = 7/208 (3%)
Query 13 DIELLRLFSLSSEFKYMPVREEEKLELQRLME-RVPIPVKGSP-DEPSSKVNVLLQAYIS 70
D ++ L S+S+EF + REEE +L+ LM + V+G + KVNVLLQ+ IS
Sbjct 638 DDMVIGLISMSTEFANLKCREEEIGDLEELMSYGCMMNVRGGGLASVAGKVNVLLQSLIS 697
Query 71 KLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWSTMTP 130
+ A+M++ +YVQQ+A R+ RA+F++ L+ GW+Q A L + V+ +MW
Sbjct 698 RTSTRNSALMSEQLYVQQNAGRLCRAMFEMVLKNGWSQAANAFLGIAKCVEKQMWMNQCA 757
Query 131 LRQF---KVLPEELLRKIEKKDLPFDRYYDLTSTEIGELVRVPKMGKLLHRLIHSFPKLE 187
LRQF +P + KIE+K +L++ ++G + G L+ + P+++
Sbjct 758 LRQFIQIINIPITWIEKIERKKARESDLLELSAKDLGYMFSCD--GDRLYTYLRYLPRMD 815
Query 188 LAAFVQPLSRSCLVVELTITPDFQWDPK 215
+ A +P++ + + VE+T+TP F W+ +
Sbjct 816 VQAKFKPITYTIVQVEVTLTPTFIWNDQ 843
> dre:100332599 mutagen-sensitive 308-like
Length=864
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 72/120 (60%), Gaps = 0/120 (0%)
Query 94 MRAIFDICLRRGWAQLAIRALQLCNEVQGRMWSTMTPLRQFKVLPEELLRKIEKKDLPFD 153
MRA+F++ LR+ W + R L LC + R+W PLRQF LP L ++E K+L D
Sbjct 1 MRALFEMALRKRWPAMTYRLLNLCKVMDKRLWGWAHPLRQFNTLPASALARMEDKNLTID 60
Query 154 RYYDLTSTEIGELVRVPKMGKLLHRLIHSFPKLELAAFVQPLSRSCLVVELTITPDFQWD 213
+ D+ EIG ++ +G + + +H P + L + +QP++R+ L V L+ITPDF+W+
Sbjct 61 KLRDMGKDEIGHMLHHVNIGLKVKQCVHQIPAILLESSIQPITRTVLRVRLSITPDFRWN 120
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 4/116 (3%)
Query 7 LKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVK-GSPDEPSSKVNVLL 65
LKP L ELL + S + E+ +PVR E L +R+P+ V S D +K ++LL
Sbjct 670 LKPELPVHELLAILSEAEEYAELPVRHNEDQLNSELAQRLPLQVNPHSYDSAHTKTHLLL 729
Query 66 QAYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQ 121
QA+ S+ +L D V +A RI +A+ D+ GW + AL LCN VQ
Sbjct 730 QAHFSRAQLPCSDYGTDTKTVLDNAIRICQAMLDVVANEGW---LVSALSLCNLVQ 782
> cpv:cgd5_2960 U5snrp Brr2 SFII RNA helicase (sec63 and the second
part of the RNA
Length=1204
Score = 98.6 bits (244), Expect = 2e-20, Method: Composition-based stats.
Identities = 52/129 (40%), Positives = 82/129 (63%), Gaps = 17/129 (13%)
Query 5 RHLKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSPD--------- 55
+ L P LS+I+L RLFS EFK++ VR EEK+EL++L+++VPIP++G
Sbjct 1072 KQLLPNLSEIQLFRLFSTCKEFKFLLVRNEEKIELEKLVDKVPIPIQGVGSSNVDGNDNI 1131
Query 56 ------EPSSKVNVLLQAYI--SKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWA 107
+ +KVNVLLQ YI S+ +++D+ ++ QSA RI RAIF++ ++R W+
Sbjct 1132 GNMVDLDTFTKVNVLLQLYITGSRWINAKLTLLSDLHFIAQSAPRIFRAIFNLAIKRRWS 1191
Query 108 QLAIRALQL 116
LA R+L++
Sbjct 1192 TLARRSLKI 1200
> tgo:TGME49_049810 activating signal cointegrator 1 complex subunit
3, putative (EC:5.99.1.3)
Length=2539
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 62/215 (28%), Positives = 102/215 (47%), Gaps = 20/215 (9%)
Query 16 LLRLFSLSSEFKYMPVREEEKLELQRLMERV--PIPVKGSPDEPSSKVNVLLQAYISKLK 73
+LRL L+ EF + VR++E+ EL L +P+ G D P +KV L+QA +++
Sbjct 1221 ILRLLGLAKEFASLKVRDDEESELSNLRRSAICRVPIVGDFDAPEAKVQTLVQAALAQAP 1280
Query 74 LEGFAMMADMVYVQQSASRIMRAIFD--ICLRRGWAQLAIRALQLCN------EVQGRMW 125
++ F++ AD YVQ + I + + RG + + CN +VQ R
Sbjct 1281 IKAFSLCADSNYVQAGDASSAEKILEWTKAVERGLWPTSHVLMHFCNPNCFDPDVQKRRQ 1340
Query 126 -----STMTPLRQFK-VLPEELLRKIEKKDLPFDRYYDLTSTEIGELVRVPKMGKLLHRL 179
+ P +Q + VL E ++ ++EK R DL ++EI LV G+ +
Sbjct 1341 PYVPRANEHPGKQNRLVLREGMVSRLEKHQFALGRLRDLGASEIASLVASKADGQDVALA 1400
Query 180 IHSFPKLELAAFVQPLSRSCLVVELTI--TPDFQW 212
I P LEL V P++ + L V + + T +F W
Sbjct 1401 IRMVPDLELD--VNPITAAILRVSIALRFTEEFLW 1433
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query 11 LSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSP-DEPSSKVNVLLQAYI 69
LS +++++L + E+K MPVR E P P+ S + P +K +L QA +
Sbjct 2217 LSFVDIVKLLADVPEYKQMPVRHNEDNLNADFSAICPYPIDASTVNSPHTKTFLLFQAQM 2276
Query 70 SKLKLEGFAMMADMVYVQQSASRIMRAIFDIC 101
+L + D+ +A RI++A+ DIC
Sbjct 2277 FQLPVPIADYNTDLKSALDNAMRILQAMLDIC 2308
> xla:100158290 snrnp200, ascc3l1; small nuclear ribonucleoprotein
200kDa (U5); K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=457
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 96/179 (53%), Gaps = 8/179 (4%)
Query 16 LLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSP-DEPSSKVNVLLQAYISKLKL 74
L+ + S ++E++ +P+R E L++L ++VP + ++P K N+LLQA++S+++L
Sbjct 166 LIEIISNAAEYESIPIRHHEDNLLRQLAQKVPHKLTNPKFNDPHVKTNLLLQAHLSRMQL 225
Query 75 EGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWSTMTPLRQF 134
+ +D + A R+++A D+ GW A+ A++L V MWS + LRQ
Sbjct 226 SA-ELQSDTEEILGKAVRLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLRQL 284
Query 135 KVLPEELLRKIEKKDLP--FDRYYDLTSTEIGELVRV--PKMGKLLHRLIHSFPKLELA 189
E +++ K++ FD ++ E EL+++ +M + R + +P +EL+
Sbjct 285 PHFSSEHIKRCTDKEVESVFD-IMEMEDEERSELLQLSDSQMADVA-RFCNRYPNIELS 341
> tpv:TP01_0582 RNA helicase
Length=1764
Score = 54.3 bits (129), Expect = 3e-07, Method: Composition-based stats.
Identities = 50/214 (23%), Positives = 101/214 (47%), Gaps = 21/214 (9%)
Query 16 LLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPV---KGSPDEPSSKVNVLLQAYISKL 72
+L S EF+ + R EE EL LM P+ + KG + +KV+VL+QAYI+KL
Sbjct 671 ILDKLSECREFESILYRNEEYDELLDLMNS-PLVIYKPKGGINHIKNKVSVLIQAYIAKL 729
Query 73 KLEGFAMMADMVYVQQSASRIMRAIFDICL-----------RRGWAQLAIRALQLCNEVQ 121
++ +++ D+ ++ Q+ R+ RA F+I + W + R + N +
Sbjct 730 FIKTSSLVTDLNFIVQNIPRLARAYFEISMCETVCGPPVEHIHDWVLILERQIFNSNVLS 789
Query 122 G--RMWSTMTPLRQFKVLPEELLRKIEKKDLPFDRYYDLTSTEIGELVRVPKMGKLLHRL 179
+ +TP + +L L+ + + L + + + E+ ++VR + + +
Sbjct 790 NFTSPMNNLTPSKDLGLLSTNLVDRFNRFKL--EDIINFSYQEVLDIVRSKQDASTISKY 847
Query 180 IHSFPKLELAAFVQPLSRSCLVVELTITPDFQWD 213
I P E+ + QP++ + +LT++ + + D
Sbjct 848 IKYIPYPEVKLYNQPITDK--ITKLTVSVEIKND 879
Score = 35.0 bits (79), Expect = 0.19, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query 15 ELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGS-PDEPSSKVNVLLQAYISKLK 73
E+ R+ S ++EF +P+R E + +L P + S +P++K +L QA + LK
Sbjct 1535 EIARILSNATEFNLVPLRHNEDVYNVQLSNLCPSKITESEASDPNAKTFLLFQARLFNLK 1594
Query 74 LEGFAMMADMVYVQQSASRIMR 95
L F D + RI++
Sbjct 1595 LPVFDYNNDTKSILDQLPRIIQ 1616
> pfa:PF14_0370 DEAD/DEAH box helicase, putative; K01509 adenosinetriphosphatase
[EC:3.6.1.3]
Length=2472
Score = 50.1 bits (118), Expect = 5e-06, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query 14 IELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSPDEPSS-KVNVLLQAYISKL 72
IE++++ S + EF+ + +R E+ + L ++ I K DE + + +L++ Y+ +L
Sbjct 982 IEIIQVISKAKEFENIQIRNEDMKDFLYLKDKCDI--KEEYDESKNMTLRILIEVYLRRL 1039
Query 73 KLEGFAMMADMVYVQQSASRIMRAIFDICL 102
++ F+++ ++ Y+ Q+ RI+ A +DICL
Sbjct 1040 QINNFSIICEINYIVQNIIRILYAYYDICL 1069
Score = 36.2 bits (82), Expect = 0.086, Method: Composition-based stats.
Identities = 39/188 (20%), Positives = 80/188 (42%), Gaps = 17/188 (9%)
Query 10 TLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVKGSPDEPSSKVNVLLQAYI 69
+L ++ L + EF +P+R E +L ++P+ + + P+ K +LL +
Sbjct 2146 SLEFYDIFELVVQAKEFDDIPLRHNEDKYNVKLRNQIPLDI--DMNMPNVKTYLLLLSRF 2203
Query 70 SKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCNEVQGRMWSTMT 129
+ E D+ V +R++ A DICL + + + N + ++
Sbjct 2204 YECTYETVDYHIDLKLVMDQIARVINAFIDICLLFHNYNYIKKLILIFNCINQKVKPNTN 2263
Query 130 PLRQFKVLPEELLRKIEKKD-------LPFDRYYDLT-----STEIGELVRVPKMG---K 174
L K + E + K+++ D + FD+ Y + T+I ++++P K
Sbjct 2264 SLYIIKDITEYQIYKLKQLDIYNINQLIKFDKSYLYSLNIFDITQINFILQLPVFNMNVK 2323
Query 175 LLHRLIHS 182
L ++ IHS
Sbjct 2324 LFYKDIHS 2331
> cpv:cgd2_2770 U5 small nuclear ribonucleoprotein 200kDA helicase,
Pre-mRNA splicing helicase BRR2 2 (RNA helicase plus Sec63
domain)
Length=2184
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/130 (32%), Positives = 71/130 (54%), Gaps = 6/130 (4%)
Query 11 LSDIELLRLFSLSSEFKYMPVREEEKLELQRLM--ERVPIPVKGSPD--EPSSKVNVLLQ 66
LSD +L + + EF M REEE EL+ ++ +V VK D SSKV +LL
Sbjct 876 LSDFNILEIVGKAKEFSSMAPREEEIEELENIVCNRQVASIVKKRIDVTNVSSKVALLLI 935
Query 67 AYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRR--GWAQLAIRALQLCNEVQGRM 124
AY ++++ ++ D +Y+ Q+ +RI+R IF++ G ++ A R L+ ++ R+
Sbjct 936 AYSLRIEITTPTLVMDSIYISQNGARILRFIFELIQLSTFGVSERAQRVLEWSKMLEMRI 995
Query 125 WSTMTPLRQF 134
+ T + LR F
Sbjct 996 FYTQSVLRHF 1005
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query 11 LSDIELLRLFSLSSEFKYMPVREEEKLELQRLMERVP---IPVKGSPDEPSSKVNVLLQA 67
+S +E+L L S + EF+ PVR E ++++ +P +P + P KV +LLQA
Sbjct 1890 VSWVEILSLISQAQEFETYPVRHNEDKICTKMLKYLPFGKLPFE-PMTSPHQKVFILLQA 1948
Query 68 YISKLKLEGFAMMADMVYVQQSASRIMRAIFDI 100
I + + + D+ + RI+ A +
Sbjct 1949 NIFSIPVTVVDFINDINSILDQVPRILHAFIQL 1981
> bbo:BBOV_I001530 19.m02171; helicase
Length=1798
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 50/240 (20%), Positives = 103/240 (42%), Gaps = 31/240 (12%)
Query 1 SRPRRHLKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMER-VPIPVKGSPDEPSS 59
S+P R P ++D +L EF+ + R +E EL LM + P +G + ++
Sbjct 709 SQPPR---PLITDEYILERVCECKEFENLMYRNDELEELSDLMRHSIFKPTRGL-NHITT 764
Query 60 KVNVLLQAYISKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRAL--QLC 117
K+++L++A+I++ ++ ++++DM Y+ Q+ R++ A F++ + I L +
Sbjct 765 KISLLIEAHINRTYIKSSSLISDMNYIIQNIGRLLLAYFEVSMSETVCAPPIGNLIYKWA 824
Query 118 NEVQGRMWSTMTPLRQFKVL-----PEELL---RKIEKKDLP--------------FDRY 155
+ ++W LR VL P + K++ LP +
Sbjct 825 LMFERQIWD--VKLRPLNVLYHFCRPYHAMYDRAKMQSSKLPTLSEGTATRLSTYNLESL 882
Query 156 YDLTSTEIGELVRVPKMGKLLHRLIHSFPKLELAAFVQPLSRSCLVVELTITPDFQWDPK 215
DLT +E +LV+ + + P ++ +P++ V + IT W +
Sbjct 883 MDLTHSEFSQLVKSRSEASAVESFLGFVPYPQIIPSSRPITSCITEVNVKITLKNNWSTR 942
Score = 37.4 bits (85), Expect = 0.036, Method: Composition-based stats.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query 15 ELLRLFSLSSEFKYMPVREEEKLELQRLMERVPIPVK-GSPDEPSSKVNVLLQAYISKLK 73
++LR+ S + EF +P+R E + +L +P+ P +K +LLQA + KLK
Sbjct 1568 KILRIISNAKEFGEVPLRHNEDVYNMQLSADAVMPIAPAEASNPHAKTFLLLQARLFKLK 1627
Query 74 LEGFAMMADMVYVQQSASRIMR 95
+ F D+ V RI +
Sbjct 1628 MPIFDYNNDLKSVMDQLPRIFQ 1649
> dre:557052 hfm1, si:ch211-83f14.5; HFM1, ATP-dependent DNA helicase
homolog (S. cerevisiae)
Length=1228
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 79/185 (42%), Gaps = 10/185 (5%)
Query 15 ELLRLFSLSSEFKYMPVREEEKLELQRLME-----RVPIPVKGSPDEPSSKVNVLLQAYI 69
EL+ + S + EF M +R E+ L L + + P++G KVN L+QA +
Sbjct 698 ELIEMISKAKEFSDMQLRVNERKTLNTLNKDKNRTTIRFPIEGKIKSNDMKVNCLIQAQL 757
Query 70 SKLKLEGFAMMADMVYVQQSASRIMRAIFDICLRRGWAQLA--IRALQLCNEVQGRMWST 127
+ ++ F ++ D + ++A R+ R + + + A + AL L + ++W
Sbjct 758 GCIPIQEFGLIQDTGKIFRNAVRVSRYLTEFLCHHSKSNFAAQLNALILAKCFRAKLWEN 817
Query 128 MTPL-RQFKVLPEELLRKIEKKDLPFDRYYDLTSTEIGELV--RVPKMGKLLHRLIHSFP 184
+ +Q + + L + L + TS EL+ R P G + I P
Sbjct 818 SPYISKQLERIGLSLATALVNAGLTTFSKIEQTSPRELELIVNRHPPFGNQIKEAISKLP 877
Query 185 KLELA 189
+ E++
Sbjct 878 RCEVS 882
> hsa:164045 HFM1, FLJ36760, FLJ39011, MER3, MGC163397, RP11-539G11.1,
SEC63D1, Si-11, Si-11-6, helicase; HFM1, ATP-dependent
DNA helicase homolog (S. cerevisiae) (EC:3.6.4.12)
Length=1435
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 94/210 (44%), Gaps = 14/210 (6%)
Query 8 KPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLM---ERVPI--PVKGSPDEPSSKVN 62
K TLSD L+ L + EF + +R EK L L R+ I P++G KVN
Sbjct 803 KETLSD--LVTLIAGCKEFLDIQLRINEKKTLNTLNKDPNRITIRFPMEGRIKTREMKVN 860
Query 63 VLLQAYISKLKLEGFAMMADMVYVQQSASRIMRAIFD-ICLRRGWAQLAIRALQLCNEVQ 121
L+QA + + ++ FA+ D + + SRI R + D + + + + +L L +
Sbjct 861 CLIQAQLGCIPIQDFALTQDTAKIFRHGSRITRWLSDFVAAQEKKFAVLLNSLILAKCFR 920
Query 122 GRMW-STMTPLRQFKVLPEELLRKIEKKDLPFDRYYDLTSTEIGELV--RVPKMGKLLHR 178
++W +++ +Q + + L I L + + T EL+ R P G +
Sbjct 921 CKLWENSLHVSKQLEKIGITLSNAIVNAGLTSFKKIEETDARELELILNRHPPFGTQIKE 980
Query 179 LIHSFPKLELAAFVQPLSR-SCLVVELTIT 207
+ PK EL V+ ++R S E+ +T
Sbjct 981 TVMYLPKYELK--VEQITRYSDTTAEILVT 1008
> mmu:330149 Hfm1, A330009G12Rik, Gm1046, Sec63d1; HFM1, ATP-dependent
DNA helicase homolog (S. cerevisiae)
Length=1434
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 5/92 (5%)
Query 14 IELLRLFSLSSEFKYMPVREEEKLELQRLM---ERVPI--PVKGSPDEPSSKVNVLLQAY 68
++L+ + S +EF + +R EK L L R+ I P+ KVN L+QA
Sbjct 805 LDLISMISSCNEFLDVQLRISEKRILNTLNKDPNRITIRFPMAERIKTREMKVNCLIQAQ 864
Query 69 ISKLKLEGFAMMADMVYVQQSASRIMRAIFDI 100
+ + ++ FA+ D V + ++ SRI R + D
Sbjct 865 LGCIPIQDFALTQDTVKIFRNGSRIARWLSDF 896
> bbo:BBOV_IV010770 23.m05766; hypothetical protein
Length=1104
Score = 31.6 bits (70), Expect = 2.0, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query 115 QLCNEVQGRMWSTMTPLRQFKV--LPEELLRKIEK----KDLPFDRYYDLTSTEIGELVR 168
Q+C+E+ +MWS++ ++ +V L E+ +E+ KD RY T ++ +L
Sbjct 616 QICDEIDLQMWSSIIGQKEKRVQKLRSEVETTVERLSSFKDTIESRYSSYTRKDLNDLKH 675
Query 169 VPKMGKLLHRLIHSFP 184
+P K R I + P
Sbjct 676 IPGFAK--ERSIQTEP 689
> dre:664698 nefl, MGC136626, zgc:136626; neurofilament, light
polypeptide; K04572 neurofilament light polypeptide
Length=579
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query 6 HLKPTLSDIELLRLFSLSSEFKYMPVREEEKLELQRLMER 45
HL +D+EL + LSSEFK VR +E+ +LQ L +R
Sbjct 56 HLSAASADMELSQATQLSSEFKQ--VRTQERAQLQDLNDR 93
> cel:Y63D3A.6 dnj-29; DNaJ domain (prokaryotic heat shock protein)
family member (dnj-29); K09540 translocation protein SEC63
Length=752
Score = 30.4 bits (67), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query 20 FSLSSEF-KYMPVREEEKLELQRLMERVPIPVKGSPDEPSS-----KVNVLLQAYISKLK 73
F S ++ K + RE + E+ RLM+++ ++P S K VLL AY+S+L
Sbjct 257 FEFSKQYNKEIQERETDDYEVPRLMKQIAGVNDKGKEQPLSQPYALKSRVLLHAYLSRLP 316
Query 74 LE--GFAMMADMVYVQQSASRIMRAI 97
LE A+ D Y+ +RI+R +
Sbjct 317 LESQNDALEEDQSYI---ITRILRFV 339
> sce:YLR422W Protein of unknown function with similarity to human
DOCK proteins (guanine nucleotide exchange factors); interacts
with Ino4p; green fluorescent protein (GFP)-fusion protein
localizes to the cytoplasm, YLR422W is not an essential
protein
Length=1932
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 65/140 (46%), Gaps = 9/140 (6%)
Query 79 MMADMVYVQQSASRIMRAIFDICLRRGWAQLAIRALQLCN--EVQGRMWSTMTPLRQFKV 136
+MAD + + +S ++ + + C + AI + C E+ +M+S +R+ +
Sbjct 885 IMADQILLIESIPSMLETMTNHCKVEDLVRFAIGLFECCQEKEMNQKMYSRPLSVREEEY 944
Query 137 LPEE---LLRKIEKKDLPFDRYYDLTSTEIGELVRVPKMGKLLHRLIHSFPKLELAAFVQ 193
L + LL+ I KK L Y LT+TE + +R+ + K L L+ + + F
Sbjct 945 LNTKFNCLLKLINKKVL--QNY--LTNTESVDKLRLQFLSKTLEWLLTPYTPGDDKCFHV 1000
Query 194 PLSRSCLVVELTITPDFQWD 213
R V +TI D+++D
Sbjct 1001 ESLRLVNSVFITIIEDYKFD 1020
Lambda K H
0.324 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 6880722740
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40