bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_3953_orf2 Length=147 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_110380 U3 small nucleolar ribonucleoprotein protein... 181 7e-46 ath:AT1G63780 IMP4; IMP4; K14561 U3 small nucleolar ribonucleo... 145 6e-35 cpv:cgd4_2740 IMP4 U3 small nucleolar ribonucleoprotein ; K145... 140 1e-33 dre:436992 imp4, zgc:86740; IMP4, U3 small nucleolar ribonucle... 135 4e-32 bbo:BBOV_I000910 16.m00780; Brix domain containing protein; K1... 128 5e-30 tpv:TP01_0039 U3 small nuclear ribonucleoprotein; K14561 U3 sm... 128 7e-30 mmu:27993 Imp4, AA409888, AV031295, D1Wsu40e; IMP4, U3 small n... 124 8e-29 hsa:92856 IMP4, BXDC4, MGC19606; IMP4, U3 small nucleolar ribo... 122 4e-28 sce:YNL075W IMP4; Component of the SSU processome, which is re... 120 1e-27 cel:ZK795.3 hypothetical protein; K14561 U3 small nucleolar ri... 116 3e-26 pfa:PF08_0055 U3 small nucleolar ribonucleoprotein protein, pu... 115 5e-26 xla:414695 imp4, MGC83136; IMP4, U3 small nucleolar ribonucleo... 113 2e-25 bbo:BBOV_IV002520 21.m02859; RNA processing factor 1; K14846 r... 49.3 5e-06 xla:379964 bxdc5, MGC53934, rpf1; RNA processing factor 1; K14... 40.0 0.003 tpv:TP03_0398 hypothetical protein; K14846 ribosome production... 39.7 0.003 tgo:TGME49_051600 RNA processing factor, putative ; K14846 rib... 37.7 0.013 ath:AT4G01560 MEE49; MEE49 (maternal effect embryo arrest 49);... 37.4 0.015 hsa:80135 RPF1, BXDC5, DKFZp761G0415, DKFZp761M0215, FLJ12475,... 37.0 0.023 cpv:cgd2_160 IMP4-like U3 small nucleolar ribonucleoprotein (s... 36.2 0.041 mmu:70285 Rpf1, 2210420E24Rik, 2310066N05Rik, Bxdc5, MGC102255... 34.3 0.15 tgo:TGME49_101380 GTP-binding protein TypA, putative (EC:2.7.7... 33.9 0.19 cel:F44G4.1 hypothetical protein; K14846 ribosome production f... 30.8 1.5 mmu:76787 Ppfia3, 2410127E16Rik; protein tyrosine phosphatase,... 29.6 3.3 hsa:8541 PPFIA3, KIAA0654, LPNA3, MGC126567, MGC126569; protei... 29.6 3.4 cpv:cgd1_750 dynein heavy chain ; K10413 dynein heavy chain 1,... 29.6 3.5 ath:AT3G20150 kinesin motor family protein 29.6 3.6 cel:F17C11.8 tag-318; Temporarily Assigned Gene name family me... 29.3 4.6 hsa:27285 TEKT2, TEKTB1, TEKTIN-T, h-tektin-t; tektin 2 (testi... 29.3 5.1 pfa:PFI1070c nucleolar preribosomal assembly protein, putative... 28.9 6.1 sce:YDR464W SPP41; Protein involved in negative regulation of ... 28.9 6.5 tgo:TGME49_053750 hypothetical protein 28.9 6.5 tgo:TGME49_053460 hypothetical protein 28.5 7.1 sce:YHR088W RPF1; Nucleolar protein involved in the assembly a... 28.5 8.3 > tgo:TGME49_110380 U3 small nucleolar ribonucleoprotein protein, putative (EC:3.1.2.15); K14561 U3 small nucleolar ribonucleoprotein protein IMP4 Length=314 Score = 181 bits (459), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 88/144 (61%), Positives = 113/144 (78%), Gaps = 4/144 (2%) Query 4 MLRRTARLRKEYLFRKSLEEKERQLAERKQQVKETLETGKPLPTNLRAAAAAAAAARLAQ 63 MLRRT RLRKEYLFRK+ EEK R LA+RK+++KE LE GK +P++LR A +L Sbjct 1 MLRRTVRLRKEYLFRKATEEKARVLADRKKRLKEALERGKAVPSDLRGEAGQ----KLLP 56 Query 64 VLDLDDPQTLAPKTHVDDEYAYAGVEDPSIALTTSRSPSSRLQQFVKELNLLLPNCRRIN 123 LDL+D T TH+DDEYAYAGVEDP + LTTSR+PSSRLQQFVKEL LL+PN +RIN Sbjct 57 TLDLEDVNTAQTTTHIDDEYAYAGVEDPKVVLTTSRNPSSRLQQFVKELRLLIPNSQRIN 116 Query 124 RGTIVLDELLQLCRSSGITDLLLV 147 RG V+++L++LCRS+ +TDL+++ Sbjct 117 RGGYVVNDLVELCRSNNVTDLIII 140 > ath:AT1G63780 IMP4; IMP4; K14561 U3 small nucleolar ribonucleoprotein protein IMP4 Length=294 Score = 145 bits (365), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 71/144 (49%), Positives = 100/144 (69%), Gaps = 5/144 (3%) Query 4 MLRRTARLRKEYLFRKSLEEKERQLAERKQQVKETLETGKPLPTNLRAAAAAAAAARLAQ 63 M RR RL+KEY++RKSLE ER++ E+K+ ++E L+ GKP+PT LR A +L Q Sbjct 1 MQRRLVRLKKEYIYRKSLEGDERKVYEQKRLIREALQEGKPIPTELRNVEA-----KLRQ 55 Query 64 VLDLDDPQTLAPKTHVDDEYAYAGVEDPSIALTTSRSPSSRLQQFVKELNLLLPNCRRIN 123 +DL+D T P++H+DDEYA A DP I LTTSR+PS+ L +F KEL + PN +RIN Sbjct 56 EIDLEDQNTAVPRSHIDDEYANATEADPKILLTTSRNPSAPLIRFTKELKFVFPNSQRIN 115 Query 124 RGTIVLDELLQLCRSSGITDLLLV 147 RG+ V+ E+++ RS TD++LV Sbjct 116 RGSQVISEIIETARSHDFTDVILV 139 > cpv:cgd4_2740 IMP4 U3 small nucleolar ribonucleoprotein ; K14561 U3 small nucleolar ribonucleoprotein protein IMP4 Length=288 Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 73/144 (50%), Positives = 98/144 (68%), Gaps = 6/144 (4%) Query 4 MLRRTARLRKEYLFRKSLEEKERQLAERKQQVKETLETGKPLPTNLRAAAAAAAAARLAQ 63 MLRR AR RKEY+ RK LE E+ + ER + KE L+ G+ +PT + + A Sbjct 1 MLRRNARQRKEYISRKGLERVEKNIFERSVRFKEALDEGRQIPTEYKNVSDKIVAN---- 56 Query 64 VLDLDDPQTLAPKTHVDDEYAYAGVEDPSIALTTSRSPSSRLQQFVKELNLLLPNCRRIN 123 +DL D ++ PK+ VDDEY+ +G+ +P I +TTSRSPSSRL QFVKELNL++PN RIN Sbjct 57 -IDLFD-TSIDPKSIVDDEYSLSGLYEPKILITTSRSPSSRLLQFVKELNLVIPNSFRIN 114 Query 124 RGTIVLDELLQLCRSSGITDLLLV 147 RG VL++ LCRS+G TDL++V Sbjct 115 RGGYVLNDFGDLCRSNGATDLVVV 138 > dre:436992 imp4, zgc:86740; IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast); K14561 U3 small nucleolar ribonucleoprotein protein IMP4 Length=291 Score = 135 bits (340), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 65/144 (45%), Positives = 96/144 (66%), Gaps = 5/144 (3%) Query 4 MLRRTARLRKEYLFRKSLEEKERQLAERKQQVKETLETGKPLPTNLRAAAAAAAAARLAQ 63 MLRR RLRKEYL+RK+ E++ R + E+KQ++K L+ + LPT +R A + + Sbjct 1 MLRREVRLRKEYLYRKAQEDRLRTIEEKKQKLKSALDENRLLPTEVRKEALE-----VQK 55 Query 64 VLDLDDPQTLAPKTHVDDEYAYAGVEDPSIALTTSRSPSSRLQQFVKELNLLLPNCRRIN 123 +L+ DD +H+DDEY +AGVEDP I +TTSR PSSRL+ F KE+ L+ P +R+N Sbjct 56 LLEFDDEGGEGVSSHMDDEYKWAGVEDPKIMVTTSRDPSSRLKMFAKEMKLMFPGAQRMN 115 Query 124 RGTIVLDELLQLCRSSGITDLLLV 147 RG + L+ C+S+ +TDL++V Sbjct 116 RGNHEVKTLVHACKSNNVTDLVIV 139 > bbo:BBOV_I000910 16.m00780; Brix domain containing protein; K14561 U3 small nucleolar ribonucleoprotein protein IMP4 Length=293 Score = 128 bits (322), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 62/144 (43%), Positives = 93/144 (64%), Gaps = 5/144 (3%) Query 4 MLRRTARLRKEYLFRKSLEEKERQLAERKQQVKETLETGKPLPTNLRAAAAAAAAARLAQ 63 MLR+T R R+EYLF K+ EE++ + +++KE L+ KP+PT LR + + Sbjct 1 MLRKTLRERREYLFAKAQEERQATSLKNARKLKEALKDNKPIPTELRNLSGTVHDS---- 56 Query 64 VLDLDDPQTLAPKTHVDDEYAYAGVEDPSIALTTSRSPSSRLQQFVKELNLLLPNCRRIN 123 LDL D TH DDEYA+ G++ P I +TTSR PSSRL QF KE+ L++PN R+N Sbjct 57 -LDLLDTHHREEHTHADDEYAFVGIKTPKIMVTTSRDPSSRLSQFAKEVRLIIPNSERMN 115 Query 124 RGTIVLDELLQLCRSSGITDLLLV 147 RG+ +L +L+ C+S ++D++L+ Sbjct 116 RGSYILKDLVTFCKSKDVSDIVLL 139 > tpv:TP01_0039 U3 small nuclear ribonucleoprotein; K14561 U3 small nucleolar ribonucleoprotein protein IMP4 Length=302 Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 64/154 (41%), Positives = 99/154 (64%), Gaps = 15/154 (9%) Query 4 MLRRTARLRKEYLFRKSLEEKERQLAERKQQVKETLETGKPLPTNLRAAAAAAAAARLAQ 63 MLR+T R R+EY+F KS E K++ ++ +++ E L+ KP+PT LR + A+ Sbjct 1 MLRKTLRQRREYIFLKSRENKDKYSLKKARELNEALKNNKPIPTELRNQSGVVQAS---- 56 Query 64 VLDLDDPQTLAPKTHVDDEYAYAGV----------EDPSIALTTSRSPSSRLQQFVKELN 113 LDL D + +HVD+EYA+ G+ +DP I +TTSR+PSSRL QF KEL Sbjct 57 -LDLLDAKRREEYSHVDNEYAFCGMLHYFTKNLGFKDPKILITTSRNPSSRLTQFAKELC 115 Query 114 LLLPNCRRINRGTIVLDELLQLCRSSGITDLLLV 147 L++PN R+NRG+ +L +L++ CRS ++D++L+ Sbjct 116 LIIPNSERLNRGSYILKDLVEFCRSKDVSDMVLI 149 > mmu:27993 Imp4, AA409888, AV031295, D1Wsu40e; IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast); K14561 U3 small nucleolar ribonucleoprotein protein IMP4 Length=291 Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 62/133 (46%), Positives = 88/133 (66%), Gaps = 5/133 (3%) Query 15 YLFRKSLEEKERQLAERKQQVKETLETGKPLPTNLRAAAAAAAAARLAQVLDLDDPQTLA 74 YL+RK+ EE +R + E+K++VK LE + +PT LR A A L L+ DD Sbjct 12 YLYRKAREEAQRSVQEKKERVKRALEENQLIPTELRREALA-----LQGSLEFDDAGGEG 66 Query 75 PKTHVDDEYAYAGVEDPSIALTTSRSPSSRLQQFVKELNLLLPNCRRINRGTIVLDELLQ 134 +HVDDEY +AGVEDP + +TTSR PSSRL+ F KEL L+ P +R+NRG + L++ Sbjct 67 VTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVR 126 Query 135 LCRSSGITDLLLV 147 C+++G+TDLL+V Sbjct 127 ACKANGVTDLLVV 139 > hsa:92856 IMP4, BXDC4, MGC19606; IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast); K14561 U3 small nucleolar ribonucleoprotein protein IMP4 Length=291 Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 61/133 (45%), Positives = 87/133 (65%), Gaps = 5/133 (3%) Query 15 YLFRKSLEEKERQLAERKQQVKETLETGKPLPTNLRAAAAAAAAARLAQVLDLDDPQTLA 74 YL+RK+ EE +R ERK++++ LE + +PT LR A A L L+ DD Sbjct 12 YLYRKAREEAQRSAQERKERLRRALEENRLIPTELRREALA-----LQGSLEFDDAGGEG 66 Query 75 PKTHVDDEYAYAGVEDPSIALTTSRSPSSRLQQFVKELNLLLPNCRRINRGTIVLDELLQ 134 +HVDDEY +AGVEDP + +TTSR PSSRL+ F KEL L+ P +R+NRG + L++ Sbjct 67 VTSHVDDEYRWAGVEDPKVMITTSRDPSSRLKMFAKELKLVFPGAQRMNRGRHEVGALVR 126 Query 135 LCRSSGITDLLLV 147 C+++G+TDLL+V Sbjct 127 ACKANGVTDLLVV 139 > sce:YNL075W IMP4; Component of the SSU processome, which is required for pre-18S rRNA processing; interacts with Mpp10p; member of a superfamily of proteins that contain a sigma(70)-like motif and associate with RNAs; K14561 U3 small nucleolar ribonucleoprotein protein IMP4 Length=290 Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 68/149 (45%), Positives = 92/149 (61%), Gaps = 12/149 (8%) Query 4 MLRRTARLRKEYLFRKSLEEKERQLAERKQQVKETLETGKPLPTNLRAAAAAAAAARLAQ 63 MLRR AR R+EYL+RK+ E ++ QL +++Q +K+ L GKPLP L + R Q Sbjct 1 MLRRQARERREYLYRKAQELQDSQLQQKRQIIKQALAQGKPLPKELAEDESLQKDFRYDQ 60 Query 64 VL----DLDDPQTLAPKTHVDDEYA-YAGVEDPSIALTTSRSPSSRLQQFVKELNLLLPN 118 L + DD Q VDDEYA +G+ DP I +TTSR PS+RL QF KE+ LL PN Sbjct 61 SLKESEEADDLQ-------VDDEYAATSGIMDPRIIVTTSRDPSTRLSQFAKEIKLLFPN 113 Query 119 CRRINRGTIVLDELLQLCRSSGITDLLLV 147 R+NRG V+ L+ C+ SG TDL+++ Sbjct 114 AVRLNRGNYVMPNLVDACKKSGTTDLVVL 142 > cel:ZK795.3 hypothetical protein; K14561 U3 small nucleolar ribonucleoprotein protein IMP4 Length=292 Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 59/144 (40%), Positives = 88/144 (61%), Gaps = 10/144 (6%) Query 4 MLRRTARLRKEYLFRKSLEEKERQLAERKQQVKETLETGKPLPTNLRAAAAAAAAARLAQ 63 M+RR RLR+E++FRKSLEEK++ L E++++++ LE + NLR A LA+ Sbjct 1 MIRRENRLRREFIFRKSLEEKQKSLEEKREKIRNALENNTKIDYNLRKDAI-----ELAK 55 Query 64 VLDLDDPQTLAPKTHVDDEYAYAGVEDPSIALTTSRSPSSRLQQFVKELNLLLPNCRRIN 123 D Q D EY +AG +DP I +TTSR PSSRL+ F KE+ L+ PN +RIN Sbjct 56 GSDWGGQQY-----ETDSEYRWAGAQDPKIVITTSRDPSSRLKMFAKEMKLIFPNAQRIN 110 Query 124 RGTIVLDELLQLCRSSGITDLLLV 147 RG + +++Q ++ TDL++ Sbjct 111 RGHYDVKQVVQASKAQDSTDLIIF 134 > pfa:PF08_0055 U3 small nucleolar ribonucleoprotein protein, putative; K14561 U3 small nucleolar ribonucleoprotein protein IMP4 Length=362 Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 55/144 (38%), Positives = 95/144 (65%), Gaps = 7/144 (4%) Query 4 MLRRTARLRKEYLFRKSLEEKERQLAERKQQVKETLETGKPLPTNLRAAAAAAAAARLAQ 63 MLRR RLRKEYL+ K +E+++++ AE+ + +KE+ + K + +L+ + L + Sbjct 1 MLRRNIRLRKEYLYLKKVEDEKKKYAEKIKSIKESYDKNKKIRGDLKDEESE-----LRK 55 Query 64 VLDLDDPQTLAPKTHVDDEYAYAGVEDPSIALTTSRSPSSRLQQFVKELNLLLPNCRRIN 123 ++L D ++ K VDDEY + G+E+P + +TTSR+PSS L+ F KEL L++PN +IN Sbjct 56 NMNLYDEKSFDRK--VDDEYFFCGLENPRVLITTSRNPSSTLENFAKELKLIIPNSEKIN 113 Query 124 RGTIVLDELLQLCRSSGITDLLLV 147 RG+ + ++L R + ITD++++ Sbjct 114 RGSYFIKDILNFARKNNITDVIIL 137 > xla:414695 imp4, MGC83136; IMP4, U3 small nucleolar ribonucleoprotein, homolog; K14561 U3 small nucleolar ribonucleoprotein protein IMP4 Length=291 Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 57/130 (43%), Positives = 83/130 (63%), Gaps = 5/130 (3%) Query 18 RKSLEEKERQLAERKQQVKETLETGKPLPTNLRAAAAAAAAARLAQVLDLDDPQTLAPKT 77 +K+ E K + E+K+++K LE + +PT +R A L + L+ DD + Sbjct 15 KKAQEAKLHSIEEKKERLKRALEENRLIPTEIRREALT-----LQKQLEFDDEGGEGVSS 69 Query 78 HVDDEYAYAGVEDPSIALTTSRSPSSRLQQFVKELNLLLPNCRRINRGTIVLDELLQLCR 137 HVDDEY +AGVEDP I +TTSR PSSRL+ F KE+ L+ PN +R+NRG + L+Q CR Sbjct 70 HVDDEYKWAGVEDPKIMITTSRDPSSRLKIFAKEMRLIFPNAQRMNRGKHEVGALVQACR 129 Query 138 SSGITDLLLV 147 ++ +TDLL+V Sbjct 130 ANDVTDLLIV 139 > bbo:BBOV_IV002520 21.m02859; RNA processing factor 1; K14846 ribosome production factor 1 Length=301 Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 23/69 (33%), Positives = 43/69 (62%), Gaps = 2/69 (2%) Query 81 DEYA--YAGVEDPSIALTTSRSPSSRLQQFVKELNLLLPNCRRINRGTIVLDELLQLCRS 138 DE+A + G +P + LT+SR PS ++++F+KEL L++PN R L+++++ Sbjct 83 DEFAAHFRGDREPKLYLTSSRRPSEKMRRFIKELLLIIPNIYYFARDENKLEDMVRHATD 142 Query 139 SGITDLLLV 147 G + +LL+ Sbjct 143 GGFSAILLI 151 > xla:379964 bxdc5, MGC53934, rpf1; RNA processing factor 1; K14846 ribosome production factor 1 Length=343 Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%) Query 81 DEYA--YAGVEDPSIALTTSRSPSSRLQQFVKELNLLLPNCRRINRGTIVLDELLQLCRS 138 DE+A + P I +TTS P R +F ++L+ ++PN R + L +++ C S Sbjct 124 DEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSIIPNSDVYYRRGLALKKIIPQCVS 183 Query 139 SGITDLLLV 147 TDLL++ Sbjct 184 RDYTDLLVI 192 > tpv:TP03_0398 hypothetical protein; K14846 ribosome production factor 1 Length=321 Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust. Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 0/57 (0%) Query 91 PSIALTTSRSPSSRLQQFVKELNLLLPNCRRINRGTIVLDELLQLCRSSGITDLLLV 147 P + +T++R PS +++ ++KEL L+L N R L E+++ +G T +LLV Sbjct 115 PKLLITSTRRPSEKMRTYMKELLLVLSNSYYFAREEYKLKEVVKHATENGFTSILLV 171 > tgo:TGME49_051600 RNA processing factor, putative ; K14846 ribosome production factor 1 Length=389 Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust. Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 2/69 (2%) Query 81 DEYA-YAGVE-DPSIALTTSRSPSSRLQQFVKELNLLLPNCRRINRGTIVLDELLQLCRS 138 DE+A Y E P + +TT++ ++ + F+KE+ + PN RG + + + Sbjct 172 DEFAAYFNREVTPKLMITTNKRVTADMYSFLKEVLYIFPNAFFYKRGPYQIKNICKFAVK 231 Query 139 SGITDLLLV 147 G TDLL+ Sbjct 232 QGFTDLLVF 240 > ath:AT4G01560 MEE49; MEE49 (maternal effect embryo arrest 49); K14846 ribosome production factor 1 Length=343 Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust. Identities = 32/118 (27%), Positives = 49/118 (41%), Gaps = 24/118 (20%) Query 54 AAAAAARLAQVLDLDDPQTLAPKT------------HVDDEYAYAGVED----------- 90 A AA + A L + PQ + PKT DDE +A ++ Sbjct 66 ARDAAEKRALELGEEPPQKMIPKTIENTRESDETVCRPDDEELFADIDADEFNPVLRREI 125 Query 91 -PSIALTTSRSPSSRLQQFVKELNLLLPNCRRINRGTIVLDELLQLCRSSGITDLLLV 147 P + LTT R S+R + EL ++PN RGT L ++++ T L++V Sbjct 126 APKVLLTTCRFNSTRGPALISELLSVIPNSHYQKRGTYDLKKIVEYATKKDFTSLIVV 183 > hsa:80135 RPF1, BXDC5, DKFZp761G0415, DKFZp761M0215, FLJ12475, RP11-118B23.1; ribosome production factor 1 homolog (S. cerevisiae); K14846 ribosome production factor 1 Length=349 Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Query 81 DEYA--YAGVEDPSIALTTSRSPSSRLQQFVKELNLLLPNCRRINRGTIVLDELLQLCRS 138 DE+A + P I +TTS P R + ++L+ ++PN R + L +++ C + Sbjct 130 DEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVIPNSHVYYRRGLALKKIIPQCIA 189 Query 139 SGITDLLLV 147 TDL+++ Sbjct 190 RDFTDLIVI 198 > cpv:cgd2_160 IMP4-like U3 small nucleolar ribonucleoprotein (snoRNP) ; K14846 ribosome production factor 1 Length=359 Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust. Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 6/74 (8%) Query 80 DDEYA--YAGVEDPSIALTTSRSPSSRLQQFVKELNLLLPNCRRINRGTIVLDELLQLCR 137 +DE++ ++ P + +TT+ S + F+KE+ ++PNC R + ++++ Sbjct 119 NDEFSDYFSRKRSPKLLITTNNKASKHMYNFLKEIVSIIPNCDFYKRNGFNIKDIIKEVN 178 Query 138 SSG----ITDLLLV 147 G TD+L+ Sbjct 179 EKGTENNYTDILIF 192 > mmu:70285 Rpf1, 2210420E24Rik, 2310066N05Rik, Bxdc5, MGC102255; ribosome production factor 1 homolog (S. cerevisiae); K14846 ribosome production factor 1 Length=212 Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust. Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 2/69 (2%) Query 81 DEYA--YAGVEDPSIALTTSRSPSSRLQQFVKELNLLLPNCRRINRGTIVLDELLQLCRS 138 DE+A + P I +TTS P R + ++L+ ++P+ R + L +++ C + Sbjct 130 DEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVIPDSHVYYRRGLALKKIIPQCIA 189 Query 139 SGITDLLLV 147 TDL+++ Sbjct 190 RDFTDLIVI 198 > tgo:TGME49_101380 GTP-binding protein TypA, putative (EC:2.7.7.4); K06207 GTP-binding protein Length=749 Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 12/86 (13%) Query 11 LRKEYLFRKSLEEKERQLAERKQQVKETLETGKPLPTNLRAAAAAAAAARLA-QVLDLDD 69 LRKE + + EE++++ R + + + + LP ++ A + A R+ V+DL D Sbjct 310 LRKEGVAERGPEEEQKEAFPRSENLA-VVRSASSLPGDILVLAGVSTAVRVGDSVVDLVD 368 Query 70 PQTLAPKTHVDDEYAYAGVEDPSIAL 95 P+ LAP V DPS+++ Sbjct 369 PRPLAPMK----------VADPSVSI 384 > cel:F44G4.1 hypothetical protein; K14846 ribosome production factor 1 Length=384 Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 2/70 (2%) Query 80 DDEYAYAGVEDPSIALTTSRSPSSRLQ--QFVKELNLLLPNCRRINRGTIVLDELLQLCR 137 +DE+A + S + + +P +++ +F EL +PN R ++L +++ + Sbjct 164 NDEFAPYFNRETSPKVMITMTPKAKITTFKFCFELQKCIPNSEIFTRKNVLLKTIIEQAK 223 Query 138 SSGITDLLLV 147 TDLL+V Sbjct 224 EREFTDLLVV 233 > mmu:76787 Ppfia3, 2410127E16Rik; protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 Length=1194 Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 5/38 (13%) Query 13 KEYLFRKSLEEKERQLAER----KQQVKETLETGKPLP 46 KE L+R+S EEK RQLAE KQ++++TL+ + LP Sbjct 336 KESLYRQS-EEKSRQLAEWLDDAKQKLQQTLQKAETLP 372 > hsa:8541 PPFIA3, KIAA0654, LPNA3, MGC126567, MGC126569; protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3 Length=1194 Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust. Identities = 19/38 (50%), Positives = 27/38 (71%), Gaps = 5/38 (13%) Query 13 KEYLFRKSLEEKERQLAER----KQQVKETLETGKPLP 46 KE L+R+S EEK RQLAE KQ++++TL+ + LP Sbjct 336 KESLYRQS-EEKSRQLAEWLDDAKQKLQQTLQKAETLP 372 > cpv:cgd1_750 dynein heavy chain ; K10413 dynein heavy chain 1, cytosolic Length=5246 Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 0/59 (0%) Query 19 KSLEEKERQLAERKQQVKETLETGKPLPTNLRAAAAAAAAARLAQVLDLDDPQTLAPKT 77 KSL+E+++ +AER +V+ L+ +P+ A + L ++ + +P L KT Sbjct 3643 KSLDEQQKVIAERSSEVEIQLKDVEPILREAENAVSNIPKKNLDELRSMANPPGLVKKT 3701 > ath:AT3G20150 kinesin motor family protein Length=1114 Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust. Identities = 21/93 (22%), Positives = 45/93 (48%), Gaps = 6/93 (6%) Query 43 KPLPTNLRAAAAAAAAARLAQVLDLDDPQTLAPKTHVD-DEYAYAGVEDPSIALTTSRSP 101 K P N R + ++ + +DD + + + V+ +++ + E S A S Sbjct 540 KKFPVN-RDSVNSSFVTAFGESELMDDDEICSEEVEVEENDFGESLEEHDSAATVCKSSE 598 Query 102 SSRLQQFVKELNLLLPNCRRINRGTIVLDELLQ 134 SR+++FV E ++ + CR+ +++L E +Q Sbjct 599 KSRIEEFVSENSISISPCRQ----SLILQEPIQ 627 > cel:F17C11.8 tag-318; Temporarily Assigned Gene name family member (tag-318); K12190 ESCRT-II complex subunit VPS36 Length=383 Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 13/120 (10%) Query 25 ERQLAERKQQVKETL-----ETGKPLPT--NLRAAAAAAAAARLAQVLDLDDPQTLAPKT 77 ER+LAE Q+ ET+ + K + T + A + + + ++ ++ + +T+A K+ Sbjct 158 ERRLAENHQKTHETITQAFDDMSKLMETAREMVALSKSISEKVRSRKGEISEDETIAFKS 217 Query 78 HVDDEYAYAGVEDPSIALTTSRSPSSRLQQFVKELNLLLPNCRRINRGTIVLDELLQLCR 137 ++ GV DP T S S Q+ KE++ +L + N G L E+ CR Sbjct 218 YL----LSLGVSDPVTKSTFVGSDSEYFQKLAKEISDVLYEHIKENGGMCALPEV--YCR 271 > hsa:27285 TEKT2, TEKTB1, TEKTIN-T, h-tektin-t; tektin 2 (testicular) Length=430 Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust. Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 0/41 (0%) Query 10 RLRKEYLFRKSLEEKERQLAERKQQVKETLETGKPLPTNLR 50 R+ E+ FRK L E E+ +E K Q K TLE L ++R Sbjct 258 RVATEFAFRKRLREMEKVYSELKWQEKNTLEEIAELQEDIR 298 > pfa:PFI1070c nucleolar preribosomal assembly protein, putative; K14846 ribosome production factor 1 Length=328 Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust. Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 2/41 (4%) Query 81 DEYA--YAGVEDPSIALTTSRSPSSRLQQFVKELNLLLPNC 119 DE++ + ++P+I +T+ + PS F+KEL+L P+ Sbjct 110 DEFSDYFKNQKEPNIIITSIKRPSKNTILFMKELSLTFPHI 150 > sce:YDR464W SPP41; Protein involved in negative regulation of expression of spliceosome components PRP4 and PRP3 Length=1435 Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust. Identities = 18/45 (40%), Positives = 31/45 (68%), Gaps = 4/45 (8%) Query 6 RRTARLRKEYLFRKSLEEKERQLAERKQQVKETLETGKPLPTNLR 50 R+TAR +E +K LE+ ++LAE ++++K+ +E G P P +LR Sbjct 622 RQTAR--EERRHKKKLEK--QRLAEEQEELKKIVERGPPYPPDLR 662 > tgo:TGME49_053750 hypothetical protein Length=8002 Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 0/56 (0%) Query 6 RRTARLRKEYLFRKSLEEKERQLAERKQQVKETLETGKPLPTNLRAAAAAAAAARL 61 +R+A +F K EE+E + + Q ET + GKP+P AA A+ ++ Sbjct 6120 KRSAEPGSWSVFSKHGEEQETRYSAAPQTNAETDDQGKPVPNESGLAAPDASDVKM 6175 > tgo:TGME49_053460 hypothetical protein Length=193 Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust. Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%) Query 35 VKETLETGKPLPTNLRAAAAAAAAARLAQVLDLDDPQ-TLAPKTHVDDE 82 V E+LET + T L A+ AAA V ++ PQ T PK H+DD+ Sbjct 124 VTESLETAERTLTELPTASEAAATTGEVPVNEMWAPQATELPKQHIDDD 172 > sce:YHR088W RPF1; Nucleolar protein involved in the assembly and export of the large ribosomal subunit; constituent of 66S pre-ribosomal particles; contains a sigma(70)-like motif, which is thought to bind RNA; K14846 ribosome production factor 1 Length=295 Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Query 89 EDPSIALTTSRSPSSRLQQFVKELNLLLPNCRRINRG-TIVLDELLQLCRSSGITDLLLV 147 E P I LTT+ + +F L +LPN + R L E+ +C TD++++ Sbjct 91 EPPKIFLTTNVNAKKSAYEFANILIEILPNVTFVKRKFGYKLKEISDICIKRNFTDIVII 150 Lambda K H 0.317 0.132 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2938175820 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40