bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_4872_orf1
Length=81
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_062070 ribosomal RNA assembly protein, putative ; K... 124 1e-28
sce:YCL059C KRR1; Essential nucleolar protein required for the... 122 4e-28
cpv:cgd3_2950 ribosomal RNA assembly protein mis3/dribble/Krr1... 113 1e-25
bbo:BBOV_II006650 18.m06544; Ribosomal RNA assembly protein mi... 112 2e-25
pfa:PFB0370c RNA binding protein, putative; K06961 ribosomal R... 108 5e-24
tpv:TP02_0631 hypothetical protein; K06961 ribosomal RNA assem... 105 3e-23
ath:AT5G08420 RNA binding; K06961 ribosomal RNA assembly protein 104 9e-23
hsa:11103 KRR1, HRB2, RIP-1; KRR1, small subunit (SSU) process... 103 2e-22
xla:399412 krr1, hrb2; KRR1, small subunit (SSU) processome co... 102 2e-22
mmu:52705 Krr1, 2610511F02Rik, AI255219, AI428520, D10Ertd773e... 102 4e-22
cel:C05C8.2 hypothetical protein; K06961 ribosomal RNA assembl... 92.8 3e-19
dre:724049 krr1, zgc:136398; KRR1, small subunit (SSU) process... 91.7 5e-19
cel:Y38A10A.4 fbxa-214; F-box A protein family member (fbxa-214) 28.5 5.0
> tgo:TGME49_062070 ribosomal RNA assembly protein, putative ;
K06961 ribosomal RNA assembly protein
Length=394
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 54/74 (72%), Positives = 65/74 (87%), Gaps = 0/74 (0%)
Query 7 CYILVQGQTVAAMGSPKGLKQVPRVVEDCMQNVHPVYHVKELLIRRELAKDEKLKNENWD 66
CY+LVQGQTV+ MG+ KG+K V R+VEDCM+N+HPVYH+KEL+I+REL KD L ENW+
Sbjct 199 CYVLVQGQTVSVMGTHKGIKVVQRLVEDCMKNIHPVYHIKELMIKRELEKDPALVEENWE 258
Query 67 RFLPQFKKRNVQRK 80
RFLPQFKKRNVQRK
Sbjct 259 RFLPQFKKRNVQRK 272
> sce:YCL059C KRR1; Essential nucleolar protein required for the
synthesis of 18S rRNA and for the assembly of 40S ribosomal
subunit; K06961 ribosomal RNA assembly protein
Length=316
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 65/75 (86%), Gaps = 0/75 (0%)
Query 7 CYILVQGQTVAAMGSPKGLKQVPRVVEDCMQNVHPVYHVKELLIRRELAKDEKLKNENWD 66
CYILVQG TV+AMG KGLK+V RVVEDCM+N+HP+YH+KEL+I+RELAK +L NE+W
Sbjct 162 CYILVQGNTVSAMGPFKGLKEVRRVVEDCMKNIHPIYHIKELMIKRELAKRPELANEDWS 221
Query 67 RFLPQFKKRNVQRKK 81
RFLP FKKRNV RKK
Sbjct 222 RFLPMFKKRNVARKK 236
> cpv:cgd3_2950 ribosomal RNA assembly protein mis3/dribble/Krr1p.
KH domain ; K06961 ribosomal RNA assembly protein
Length=358
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 49/71 (69%), Positives = 61/71 (85%), Gaps = 0/71 (0%)
Query 7 CYILVQGQTVAAMGSPKGLKQVPRVVEDCMQNVHPVYHVKELLIRRELAKDEKLKNENWD 66
CY+LVQGQTV+ +GS K LK V R+VEDCM N+HPVYH+KEL+I+REL KDE+L+ ENWD
Sbjct 180 CYVLVQGQTVSVIGSYKSLKLVRRIVEDCMNNIHPVYHIKELMIKRELEKDERLRGENWD 239
Query 67 RFLPQFKKRNV 77
RFLP+FK + V
Sbjct 240 RFLPKFKNKCV 250
> bbo:BBOV_II006650 18.m06544; Ribosomal RNA assembly protein
mis3; K06961 ribosomal RNA assembly protein
Length=342
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/75 (73%), Positives = 67/75 (89%), Gaps = 0/75 (0%)
Query 7 CYILVQGQTVAAMGSPKGLKQVPRVVEDCMQNVHPVYHVKELLIRRELAKDEKLKNENWD 66
CYIL QGQTV+ +GS KG+K R+VEDCM+N+HPVYH+KEL+I+REL KDEKLK ENWD
Sbjct 165 CYILTQGQTVSIIGSIKGIKIARRIVEDCMKNIHPVYHIKELMIKRELEKDEKLKGENWD 224
Query 67 RFLPQFKKRNVQRKK 81
RFLPQFKKR+V+R+K
Sbjct 225 RFLPQFKKRSVKRRK 239
> pfa:PFB0370c RNA binding protein, putative; K06961 ribosomal
RNA assembly protein
Length=300
Score = 108 bits (269), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 60/73 (82%), Gaps = 0/73 (0%)
Query 7 CYILVQGQTVAAMGSPKGLKQVPRVVEDCMQNVHPVYHVKELLIRRELAKDEKLKNENWD 66
CYI + G+TV+ +G K LK V R++ DCM+N+HPVYH+KEL+ +REL K+E+ KNENW+
Sbjct 170 CYICIHGKTVSVIGHFKSLKVVRRIIIDCMKNIHPVYHIKELIAKRELEKNEEFKNENWE 229
Query 67 RFLPQFKKRNVQR 79
+FLP FKKRNVQR
Sbjct 230 KFLPNFKKRNVQR 242
> tpv:TP02_0631 hypothetical protein; K06961 ribosomal RNA assembly
protein
Length=349
Score = 105 bits (263), Expect = 3e-23, Method: Composition-based stats.
Identities = 47/66 (71%), Positives = 60/66 (90%), Gaps = 0/66 (0%)
Query 7 CYILVQGQTVAAMGSPKGLKQVPRVVEDCMQNVHPVYHVKELLIRRELAKDEKLKNENWD 66
CYIL QGQTV+ +GS KG+K V ++VEDC+ N+HPVY++KEL+I+REL+K+EKLKNENWD
Sbjct 166 CYILTQGQTVSVIGSIKGIKTVRKIVEDCIYNIHPVYYIKELIIKRELSKNEKLKNENWD 225
Query 67 RFLPQF 72
RFLPQF
Sbjct 226 RFLPQF 231
> ath:AT5G08420 RNA binding; K06961 ribosomal RNA assembly protein
Length=391
Score = 104 bits (259), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 46/68 (67%), Positives = 57/68 (83%), Gaps = 1/68 (1%)
Query 7 CYILVQGQTVAAMGSPKGLKQVPRVVEDCMQNV-HPVYHVKELLIRRELAKDEKLKNENW 65
CYILVQG TVAAMG KGLKQ+ R+VEDC+QN+ HPVYH+K L++++EL KD L NE+W
Sbjct 180 CYILVQGSTVAAMGPFKGLKQLRRIVEDCVQNIMHPVYHIKTLMMKKELEKDPALANESW 239
Query 66 DRFLPQFK 73
DRFLP F+
Sbjct 240 DRFLPTFR 247
> hsa:11103 KRR1, HRB2, RIP-1; KRR1, small subunit (SSU) processome
component, homolog (yeast); K06961 ribosomal RNA assembly
protein
Length=381
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 63/74 (85%), Gaps = 0/74 (0%)
Query 7 CYILVQGQTVAAMGSPKGLKQVPRVVEDCMQNVHPVYHVKELLIRRELAKDEKLKNENWD 66
CYI+VQG TV+A+G GLK+V +VV D M+N+HP+Y++K L+I+RELAKD +L++++W+
Sbjct 181 CYIMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIYNIKSLMIKRELAKDSELRSQSWE 240
Query 67 RFLPQFKKRNVQRK 80
RFLPQFK +NV ++
Sbjct 241 RFLPQFKHKNVNKR 254
> xla:399412 krr1, hrb2; KRR1, small subunit (SSU) processome
component, homolog; K06961 ribosomal RNA assembly protein
Length=372
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 63/74 (85%), Gaps = 0/74 (0%)
Query 7 CYILVQGQTVAAMGSPKGLKQVPRVVEDCMQNVHPVYHVKELLIRRELAKDEKLKNENWD 66
CYI+VQG TV+A+G GLK+V +VV D M+N+HP+Y++K L+I+RELAKD +L++++W+
Sbjct 176 CYIMVQGNTVSALGPFGGLKEVRKVVSDTMKNIHPIYNIKALMIKRELAKDPELRSKSWE 235
Query 67 RFLPQFKKRNVQRK 80
RFLPQFK +NV ++
Sbjct 236 RFLPQFKHKNVSKR 249
> mmu:52705 Krr1, 2610511F02Rik, AI255219, AI428520, D10Ertd773e,
Hrb2; KRR1, small subunit (SSU) processome component, homolog
(yeast); K06961 ribosomal RNA assembly protein
Length=380
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 63/74 (85%), Gaps = 0/74 (0%)
Query 7 CYILVQGQTVAAMGSPKGLKQVPRVVEDCMQNVHPVYHVKELLIRRELAKDEKLKNENWD 66
CY++VQG TV+A+G GLK+V +VV D M+N+HP+Y++K L+I+RELAKD +L++++W+
Sbjct 180 CYVMVQGNTVSAIGPFSGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELAKDSELRSQSWE 239
Query 67 RFLPQFKKRNVQRK 80
RFLPQFK +NV ++
Sbjct 240 RFLPQFKHKNVNKR 253
> cel:C05C8.2 hypothetical protein; K06961 ribosomal RNA assembly
protein
Length=370
Score = 92.8 bits (229), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 57/69 (82%), Gaps = 0/69 (0%)
Query 7 CYILVQGQTVAAMGSPKGLKQVPRVVEDCMQNVHPVYHVKELLIRRELAKDEKLKNENWD 66
CY+ VQG TV A+G GLKQ+ ++V DCM+N+HP+Y++K ++I+REL+K+++LK+ NWD
Sbjct 186 CYVCVQGGTVCAVGPLAGLKQINQIVTDCMKNIHPIYNIKTMMIKRELSKNDELKDANWD 245
Query 67 RFLPQFKKR 75
+LP ++K+
Sbjct 246 AYLPNYRKK 254
> dre:724049 krr1, zgc:136398; KRR1, small subunit (SSU) processome
component, homolog (yeast); K06961 ribosomal RNA assembly
protein
Length=376
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 57/72 (79%), Gaps = 0/72 (0%)
Query 7 CYILVQGQTVAAMGSPKGLKQVPRVVEDCMQNVHPVYHVKELLIRRELAKDEKLKNENWD 66
CY++VQG TV+A+G GLK+V +VV D M+N+HP+Y++K L+I+RELA D +L+ ++W
Sbjct 176 CYVMVQGNTVSALGPFNGLKEVRKVVLDTMKNIHPIYNIKTLMIKRELANDPELRTQSWG 235
Query 67 RFLPQFKKRNVQ 78
RFLP F+ +++
Sbjct 236 RFLPNFRHKSLS 247
> cel:Y38A10A.4 fbxa-214; F-box A protein family member (fbxa-214)
Length=408
Score = 28.5 bits (62), Expect = 5.0, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 0/30 (0%)
Query 50 IRRELAKDEKLKNENWDRFLPQFKKRNVQR 79
I+ +L +DE+++N NW+ FKK R
Sbjct 178 IQLKLVRDEEIRNSNWNLLETSFKKMKNSR 207
Lambda K H
0.320 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2053886800
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40