bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_4966_orf1
Length=99
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_027850 RNA recognition motif-containing protein (EC... 165 3e-41
bbo:BBOV_III003390 17.m07322; RNA recognition motif domain con... 154 8e-38
hsa:85313 PPIL4, HDCME13P; peptidylprolyl isomerase (cyclophil... 153 1e-37
mmu:67418 Ppil4, 3732410E19Rik, 3830425H19Rik, AI788954, AW146... 150 7e-37
dre:554886 ppil4, wu:fi40d03, zgc:63746; peptidylprolyl isomer... 149 2e-36
cpv:cgd8_2350 cyclophilin-RNA interacting protein ; K12735 pep... 147 1e-35
pfa:PF08_0086 RNA binding protein, putative; K12735 peptidyl-p... 144 7e-35
cel:F39H2.2 sig-7; Silencing In Germline defective family memb... 143 1e-34
ath:AT1G53720 CYP59; CYP59 (CYCLOPHILIN 59); RNA binding / nuc... 142 3e-34
tpv:TP03_0334 hypothetical protein; K12735 peptidyl-prolyl cis... 138 4e-33
dre:569999 snrnp35, MGC112337, zgc:112337; small nuclear ribon... 60.8 1e-09
mmu:101214 Tra2a, 1500010G04Rik, AL022798, G430041M01Rik, mAWM... 60.1 2e-09
hsa:29896 TRA2A, HSU53209; transformer 2 alpha homolog (Drosop... 60.1 2e-09
dre:393388 tra2a, MGC64175, zgc:64175; transformer-2 alpha; K1... 59.3 3e-09
cel:F35H8.5 exc-7; EXCretory canal abnormal family member (exc-7) 58.9 4e-09
xla:444408 MGC82977 protein; K12897 transformer-2 protein 58.2 7e-09
xla:779322 snrnp35, MGC154877, u1snrnpbp; small nuclear ribonu... 57.0 1e-08
cel:C18D11.4 rsp-8; SR Protein (splicing factor) family member... 57.0 1e-08
xla:379908 tra2a, MGC53025; transformer 2 alpha homolog; K1289... 56.6 2e-08
ath:AT1G34140 PAB1; PAB1 (POLY(A) BINDING PROTEIN 1); RNA bind... 55.5 4e-08
hsa:11066 SNRNP35, HM-1, MGC138160, U1SNRNPBP; small nuclear r... 55.5 4e-08
dre:323447 tia1l, MGC55893, TIA1, fb98f09, wu:fb98f09, zgc:558... 54.7 7e-08
mmu:76167 Snrnp35, 6330548G22Rik; small nuclear ribonucleoprot... 54.7 7e-08
ath:AT5G19030 RNA recognition motif (RRM)-containing protein 53.9 1e-07
mmu:100041505 Gm3376; predicted gene 3376 53.5
mmu:19657 Rbmy1a1, RBM, Rbm1, Rbmy1b; RNA binding motif protei... 53.5 2e-07
mmu:100042849 Gm4064; predicted gene 4064 53.5
mmu:100042881 Gm10352; predicted gene 10352 53.5
mmu:100042874 Gm10256; predicted gene 10256 53.5
ath:AT3G46020 RNA-binding protein, putative 53.1 2e-07
dre:394107 tial1, MGC66130, zgc:66130; TIA1 cytotoxic granule-... 53.1 2e-07
ath:AT4G39260 GR-RBP8; RNA binding / nucleic acid binding / nu... 52.8 3e-07
hsa:1153 CIRBP, CIRP; cold inducible RNA binding protein; K131... 52.0 4e-07
dre:793165 tia1, MGC55520, fb73d10, wu:fb73d10, wu:fc02b04, zg... 52.0 5e-07
xla:379484 cirbp-b, MGC64461, Xcirp, cirbp, cirp, cirp2, xcirp... 52.0 5e-07
ath:AT2G46780 RNA binding / nucleic acid binding / nucleotide ... 52.0 5e-07
xla:495336 hypothetical LOC495336 51.6 5e-07
dre:431719 elavl2, zgc:91918; ELAV (embryonic lethal, abnormal... 51.6 6e-07
dre:562370 puf60a, fc21a05, wu:fc21a05, wu:fi43a08; poly-U bin... 51.6 6e-07
xla:447602 MGC84815 protein 51.6 7e-07
mmu:12696 Cirbp, Cirp, R74941; cold inducible RNA binding prot... 51.2 7e-07
ath:AT5G64200 ATSC35; ATSC35; RNA binding / nucleic acid bindi... 51.2 7e-07
xla:100381100 tial1, tcbp, tiar; TIA1 cytotoxic granule-associ... 51.2 8e-07
xla:447385 tia1, MGC84540, tia-1; TIA1 cytotoxic granule-assoc... 51.2 9e-07
tgo:TGME49_024580 splicing factor, putative (EC:3.1.2.15); K12... 51.2 9e-07
cel:Y46G5A.13 hypothetical protein; K13201 nucleolysin TIA-1/TIAR 50.8 9e-07
mmu:66704 Rbm4b, 4921506I22Rik, AI504630, AI506404, Lark2, MGC... 50.8 1e-06
mmu:19653 Rbm4, 4921506I22Rik, Lark1, Mlark, Rbm4a, lark; RNA ... 50.8 1e-06
hsa:83759 RBM4B, MGC10871, RBM30, RBM4L, ZCCHC15, ZCRB3B; RNA ... 50.8 1e-06
dre:100332416 ELAV-like 2-like 50.8 1e-06
> tgo:TGME49_027850 RNA recognition motif-containing protein (EC:5.2.1.8);
K12735 peptidyl-prolyl cis-trans isomerase-like
4 [EC:5.2.1.8]
Length=592
Score = 165 bits (418), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 76/99 (76%), Positives = 89/99 (89%), Gaps = 0/99 (0%)
Query 1 KVTLEILGDIPDADMAPPENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQS 60
KVTLEILGD+PDAD PP+NVLFVAKLNP TQD+DL+ +FSRFG+I++CDIIRD +TG+S
Sbjct 343 KVTLEILGDLPDADAKPPDNVLFVAKLNPVTQDEDLQTVFSRFGDILACDIIRDWKTGRS 402
Query 61 LQYAFIGFKRREDCESAFFKMQNVLVDDRRIHVDFSQSV 99
LQYAFI F+ R CE A+FKMQNVL+DDRRIHVDFSQSV
Sbjct 403 LQYAFITFRERSACELAYFKMQNVLIDDRRIHVDFSQSV 441
> bbo:BBOV_III003390 17.m07322; RNA recognition motif domain containing
protein; K12735 peptidyl-prolyl cis-trans isomerase-like
4 [EC:5.2.1.8]
Length=271
Score = 154 bits (388), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 70/98 (71%), Positives = 84/98 (85%), Gaps = 0/98 (0%)
Query 2 VTLEILGDIPDADMAPPENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSL 61
V LEILGDIPDAD+APP+NVLFV KLNP T+ DDL+L+FSRFG +VSCD+IRD +TG SL
Sbjct 32 VVLEILGDIPDADVAPPKNVLFVCKLNPVTEADDLKLIFSRFGPVVSCDVIRDYKTGDSL 91
Query 62 QYAFIGFKRREDCESAFFKMQNVLVDDRRIHVDFSQSV 99
QYAF+ F+ + C A+F+MQNVL+DDRRIHVDF QSV
Sbjct 92 QYAFVEFESEDSCNDAYFRMQNVLIDDRRIHVDFCQSV 129
> hsa:85313 PPIL4, HDCME13P; peptidylprolyl isomerase (cyclophilin)-like
4 (EC:5.2.1.8); K12735 peptidyl-prolyl cis-trans
isomerase-like 4 [EC:5.2.1.8]
Length=492
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 69/98 (70%), Positives = 84/98 (85%), Gaps = 0/98 (0%)
Query 2 VTLEILGDIPDADMAPPENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSL 61
+ LE++GD+PDAD+ PPENVLFV KLNP T D+DL ++FSRFG I SC++IRD +TG+SL
Sbjct 222 ILLEMVGDLPDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESL 281
Query 62 QYAFIGFKRREDCESAFFKMQNVLVDDRRIHVDFSQSV 99
YAFI F++ EDCE AFFKM NVL+DDRRIHVDFSQSV
Sbjct 282 CYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVDFSQSV 319
> mmu:67418 Ppil4, 3732410E19Rik, 3830425H19Rik, AI788954, AW146233,
PPIase; peptidylprolyl isomerase (cyclophilin)-like 4
(EC:5.2.1.8); K12735 peptidyl-prolyl cis-trans isomerase-like
4 [EC:5.2.1.8]
Length=492
Score = 150 bits (380), Expect = 7e-37, Method: Composition-based stats.
Identities = 69/98 (70%), Positives = 84/98 (85%), Gaps = 0/98 (0%)
Query 2 VTLEILGDIPDADMAPPENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSL 61
+ LE++GD+PDAD+ PPENVLFV KLNP T D+DL ++FSRFG I SC++IRD +TG+SL
Sbjct 222 ILLEMVGDLPDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESL 281
Query 62 QYAFIGFKRREDCESAFFKMQNVLVDDRRIHVDFSQSV 99
YAFI F++ EDCE AFFKM NVL+DDRRIHVDFSQSV
Sbjct 282 CYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVDFSQSV 319
> dre:554886 ppil4, wu:fi40d03, zgc:63746; peptidylprolyl isomerase
(cyclophilin)-like 4 (EC:5.2.1.8); K12735 peptidyl-prolyl
cis-trans isomerase-like 4 [EC:5.2.1.8]
Length=454
Score = 149 bits (376), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 68/98 (69%), Positives = 83/98 (84%), Gaps = 0/98 (0%)
Query 2 VTLEILGDIPDADMAPPENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSL 61
+ LE++GD+PDAD+ PPENVLFV KLNP T D+DL ++FSRFG I C+IIRD +TG+SL
Sbjct 222 ILLEMVGDLPDADIKPPENVLFVCKLNPVTTDEDLEIIFSRFGLIKCCEIIRDWKTGESL 281
Query 62 QYAFIGFKRREDCESAFFKMQNVLVDDRRIHVDFSQSV 99
YAFI F++ EDCE A+FKM NVL+DDRRIHVDFSQSV
Sbjct 282 CYAFIEFEKEEDCEKAYFKMDNVLIDDRRIHVDFSQSV 319
> cpv:cgd8_2350 cyclophilin-RNA interacting protein ; K12735 peptidyl-prolyl
cis-trans isomerase-like 4 [EC:5.2.1.8]
Length=302
Score = 147 bits (370), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 76/89 (85%), Gaps = 0/89 (0%)
Query 2 VTLEILGDIPDADMAPPENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSL 61
+TLEILGDIPDADM PPENVLFV KLNP TQDDDL L+FSRFGE+ SC+IIRD +TG SL
Sbjct 214 ITLEILGDIPDADMKPPENVLFVCKLNPVTQDDDLELIFSRFGEVKSCNIIRDYKTGDSL 273
Query 62 QYAFIGFKRREDCESAFFKMQNVLVDDRR 90
QYAFI F+ ++ CE AF KMQN ++DDRR
Sbjct 274 QYAFIEFETKQQCEMAFLKMQNAVIDDRR 302
> pfa:PF08_0086 RNA binding protein, putative; K12735 peptidyl-prolyl
cis-trans isomerase-like 4 [EC:5.2.1.8]
Length=958
Score = 144 bits (363), Expect = 7e-35, Method: Composition-based stats.
Identities = 65/98 (66%), Positives = 83/98 (84%), Gaps = 0/98 (0%)
Query 2 VTLEILGDIPDADMAPPENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSL 61
+TLEILGDIPDADM PPEN+LFV KLNP T+++DL+++FSRFG I SC II+D T SL
Sbjct 159 LTLEILGDIPDADMKPPENILFVCKLNPVTEEEDLKIIFSRFGNIKSCKIIKDKVTNNSL 218
Query 62 QYAFIGFKRREDCESAFFKMQNVLVDDRRIHVDFSQSV 99
QY FI F+++EDC +A+F+M NV++DDRRIHVDF QS+
Sbjct 219 QYGFIEFEKKEDCLNAYFEMDNVVIDDRRIHVDFCQSL 256
> cel:F39H2.2 sig-7; Silencing In Germline defective family member
(sig-7); K12735 peptidyl-prolyl cis-trans isomerase-like
4 [EC:5.2.1.8]
Length=427
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 66/96 (68%), Positives = 79/96 (82%), Gaps = 0/96 (0%)
Query 4 LEILGDIPDADMAPPENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQY 63
LE++GD+ DAD PPENVLFV KLNP T D+DL ++FSRFG+I +C+I+RD R+G SLQY
Sbjct 225 LEMVGDLKDADEVPPENVLFVCKLNPVTTDEDLEIIFSRFGKINNCEIVRDRRSGDSLQY 284
Query 64 AFIGFKRREDCESAFFKMQNVLVDDRRIHVDFSQSV 99
AFI F + CE AFFKM NVL+DDRRIHVDFSQSV
Sbjct 285 AFIEFDNAKSCEQAFFKMDNVLIDDRRIHVDFSQSV 320
> ath:AT1G53720 CYP59; CYP59 (CYCLOPHILIN 59); RNA binding / nucleic
acid binding / peptidyl-prolyl cis-trans isomerase; K12735
peptidyl-prolyl cis-trans isomerase-like 4 [EC:5.2.1.8]
Length=506
Score = 142 bits (358), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 65/98 (66%), Positives = 80/98 (81%), Gaps = 0/98 (0%)
Query 2 VTLEILGDIPDADMAPPENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSL 61
V LE +GDIP+A++ PP+NVLFV KLNP T+D+DL +FSRFG +VS D+IRD +TG SL
Sbjct 225 VVLESIGDIPEAEVKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSADVIRDFKTGDSL 284
Query 62 QYAFIGFKRREDCESAFFKMQNVLVDDRRIHVDFSQSV 99
YAFI F+ +E CE A+FKM N L+DDRRIHVDFSQSV
Sbjct 285 CYAFIEFENKESCEQAYFKMDNALIDDRRIHVDFSQSV 322
> tpv:TP03_0334 hypothetical protein; K12735 peptidyl-prolyl cis-trans
isomerase-like 4 [EC:5.2.1.8]
Length=248
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 62/92 (67%), Positives = 75/92 (81%), Gaps = 0/92 (0%)
Query 2 VTLEILGDIPDADMAPPENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSL 61
V LEILGDIPDAD+ PP+NVLFV KLNP T++ DL+++FSRFG + SCDII+D TG SL
Sbjct 35 VVLEILGDIPDADITPPKNVLFVCKLNPVTEEKDLKIIFSRFGNVKSCDIIKDYVTGDSL 94
Query 62 QYAFIGFKRREDCESAFFKMQNVLVDDRRIHV 93
QYAFI F+ E C A+FKMQNVL+DDRR+ V
Sbjct 95 QYAFIEFETEESCNEAYFKMQNVLIDDRRLSV 126
> dre:569999 snrnp35, MGC112337, zgc:112337; small nuclear ribonucleoprotein
35 (U11/U12); K13155 U11/U12 small nuclear ribonucleoprotein
35 kDa protein
Length=208
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 0/80 (0%)
Query 18 PENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESA 77
P+ LFVA+LNP T ++ LR +FS+FG+I ++RD TG S +YAFI +K + A
Sbjct 48 PDLTLFVARLNPQTTEEKLRDVFSKFGDIRRLRLVRDVVTGFSKRYAFIEYKEERSLKRA 107
Query 78 FFKMQNVLVDDRRIHVDFSQ 97
+ +++D + VD Q
Sbjct 108 WRDANKLILDQYELLVDVEQ 127
> mmu:101214 Tra2a, 1500010G04Rik, AL022798, G430041M01Rik, mAWMS1;
transformer 2 alpha homolog (Drosophila); K12897 transformer-2
protein
Length=282
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 0/79 (0%)
Query 18 PENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESA 77
P L V L+ T + DLR +FSR+G + +++ D RTG+S +AF+ F+R +D + A
Sbjct 115 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 174
Query 78 FFKMQNVLVDDRRIHVDFS 96
+ + +D RRI VD+S
Sbjct 175 MERANGMELDGRRIRVDYS 193
> hsa:29896 TRA2A, HSU53209; transformer 2 alpha homolog (Drosophila);
K12897 transformer-2 protein
Length=282
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 48/79 (60%), Gaps = 0/79 (0%)
Query 18 PENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESA 77
P L V L+ T + DLR +FSR+G + +++ D RTG+S +AF+ F+R +D + A
Sbjct 117 PNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEA 176
Query 78 FFKMQNVLVDDRRIHVDFS 96
+ + +D RRI VD+S
Sbjct 177 MERANGMELDGRRIRVDYS 195
> dre:393388 tra2a, MGC64175, zgc:64175; transformer-2 alpha;
K12897 transformer-2 protein
Length=297
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query 12 DADMAP-PENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKR 70
DA P P L V L+ T + DLR +FSR+G + +++ D RTG+S +AF+ F+
Sbjct 126 DARANPDPNTCLGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEH 185
Query 71 REDCESAFFKMQNVLVDDRRIHVDFS 96
+D + A + + +D RRI VD+S
Sbjct 186 IDDAKEAMERANGMELDGRRIRVDYS 211
> cel:F35H8.5 exc-7; EXCretory canal abnormal family member (exc-7)
Length=456
Score = 58.9 bits (141), Expect = 4e-09, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 0/87 (0%)
Query 11 PDADMAPPENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKR 70
P+ D+ + L + L +++R LF+ GEI SC ++RD TGQSL Y F+ + R
Sbjct 33 PNVDIGESKTNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVR 92
Query 71 REDCESAFFKMQNVLVDDRRIHVDFSQ 97
ED A + + ++ I V +++
Sbjct 93 EEDALRAVSSFNGLRLQNKTIKVSYAR 119
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Query 13 ADMAPPENV----LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGF 68
A PP + LFV L+ T D L LFS+FG IV+ I+RD T Q YAF+
Sbjct 363 AATLPPSDTAGYCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRD-LTQQCKGYAFVSM 421
Query 69 KRREDCESAFFKMQNVLVDDRRIHVDFSQS 98
+ +A + + + + V F S
Sbjct 422 SNYTEAYNAMLSLNGTNLAGKTLQVVFKSS 451
Score = 33.5 bits (75), Expect = 0.17, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query 11 PDADMAPPENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKR 70
P D N L+V+ + + +L +F FG+I++ I+ D+ TG S F+ F +
Sbjct 120 PSNDQIKGSN-LYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDK 178
Query 71 REDCESA 77
+++ + A
Sbjct 179 KDEADVA 185
> xla:444408 MGC82977 protein; K12897 transformer-2 protein
Length=276
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 48/79 (60%), Gaps = 0/79 (0%)
Query 18 PENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESA 77
P + V L+ T + DLR +FSR+G + S +++ D RTG+S +AF+ F+R ED A
Sbjct 110 PNICVGVFGLSLYTTERDLREVFSRYGPLSSVNVVYDQRTGRSRGFAFVYFERMEDSREA 169
Query 78 FFKMQNVLVDDRRIHVDFS 96
+ + +D R++ VD+S
Sbjct 170 MEHVNGMELDGRKLRVDYS 188
> xla:779322 snrnp35, MGC154877, u1snrnpbp; small nuclear ribonucleoprotein
35kDa (U11/U12); K13155 U11/U12 small nuclear
ribonucleoprotein 35 kDa protein
Length=272
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 46/78 (58%), Gaps = 0/78 (0%)
Query 18 PENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESA 77
P LFV++L+P T ++ L+ +FSR+G+I ++RD TG S YAFI +K+ A
Sbjct 49 PHLTLFVSRLSPQTTEEKLKEVFSRYGDIKRIRLVRDFITGFSKGYAFIEYKQENAIMKA 108
Query 78 FFKMQNVLVDDRRIHVDF 95
+++D R + VDF
Sbjct 109 HRDANKLVIDQREVFVDF 126
> cel:C18D11.4 rsp-8; SR Protein (splicing factor) family member
(rsp-8); K12897 transformer-2 protein
Length=309
Score = 57.0 bits (136), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 0/85 (0%)
Query 12 DADMAPPENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRR 71
D + P L V L+ T + DLR +F FGEI CD++ D +G S + FI F
Sbjct 68 DRENPQPSKCLGVFNLSSYTTEKDLRDVFGEFGEINKCDLVYDRPSGNSRGFGFIYFNLI 127
Query 72 EDCESAFFKMQNVLVDDRRIHVDFS 96
ED +A K+ N +D +I VDFS
Sbjct 128 EDATAARDKLCNTDLDGHKIRVDFS 152
> xla:379908 tra2a, MGC53025; transformer 2 alpha homolog; K12897
transformer-2 protein
Length=276
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 0/79 (0%)
Query 18 PENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESA 77
P + V L+ T + D+R +FSR+G + +++ D RTG+S +AF+ F+R ED A
Sbjct 110 PNLCIGVFGLSLYTTERDIREVFSRYGPLAGVNVVYDQRTGRSRGFAFVYFERIEDSREA 169
Query 78 FFKMQNVLVDDRRIHVDFS 96
+ +D RRI VD+S
Sbjct 170 MEHADGMELDGRRIRVDYS 188
> ath:AT1G34140 PAB1; PAB1 (POLY(A) BINDING PROTEIN 1); RNA binding
/ translation initiation factor
Length=407
Score = 55.5 bits (132), Expect = 4e-08, Method: Composition-based stats.
Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
++V L D DL+ LF FGEI S +++D G+S ++ F+ F++ E +A KM
Sbjct 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGE-GKSRRFGFVNFEKAEAAVTAIEKM 179
Query 82 QNVLVDDRRIHVDFSQ 97
V+VD++ +HV +Q
Sbjct 180 NGVVVDEKELHVGRAQ 195
Score = 45.4 bits (106), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
L+V L+ + + L LFS FG I SC ++ S G S F+ F E+ A KM
Sbjct 225 LYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHS-NGISKGVGFVEFSTSEEASKAMLKM 283
Query 82 QNVLVDDRRIHVDFSQ 97
+V ++ I+V +Q
Sbjct 284 NGKMVGNKPIYVSLAQ 299
Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query 11 PDADMAPPENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKR 70
P M+ NV FV L+ + + L +FS FG+++SC + RD+ +G S Y F+ F
Sbjct 23 PSNRMSGRGNV-FVKNLDESIDNKQLCDMFSAFGKVLSCKVARDA-SGVSKGYGFVQFYS 80
Query 71 REDCESAFFKMQNVLVDDRRIHV 93
+A L+ ++ IHV
Sbjct 81 DLSVYTACNFHNGTLIRNQHIHV 103
> hsa:11066 SNRNP35, HM-1, MGC138160, U1SNRNPBP; small nuclear
ribonucleoprotein 35kDa (U11/U12); K13155 U11/U12 small nuclear
ribonucleoprotein 35 kDa protein
Length=246
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 0/76 (0%)
Query 21 VLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFK 80
LFVA+LN T++D L+ +FSR+G+I ++RD TG S YAFI +K A+
Sbjct 52 TLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRD 111
Query 81 MQNVLVDDRRIHVDFS 96
+++D I VD+
Sbjct 112 ADGLVIDQHEIFVDYE 127
> dre:323447 tia1l, MGC55893, TIA1, fb98f09, wu:fb98f09, zgc:55893,
zgc:76917; cytotoxic granule-associated RNA binding protein
1, like; K13201 nucleolysin TIA-1/TIAR
Length=342
Score = 54.7 bits (130), Expect = 7e-08, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 0/75 (0%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
+FV L+P DD+R F+ FG+I +++D TG+S Y FI F + D ESA +M
Sbjct 99 VFVGDLSPEISTDDVRAAFAPFGKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQM 158
Query 82 QNVLVDDRRIHVDFS 96
+ R+I +++
Sbjct 159 NGQWLGGRQIRTNWA 173
> mmu:76167 Snrnp35, 6330548G22Rik; small nuclear ribonucleoprotein
35 (U11/U12); K13155 U11/U12 small nuclear ribonucleoprotein
35 kDa protein
Length=244
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 44/76 (57%), Gaps = 0/76 (0%)
Query 21 VLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFK 80
LFVA+LN T+++ L+ +FSR+G+I ++RD TG S YAFI +K A+
Sbjct 52 TLFVARLNLQTKEEKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERALMKAYRD 111
Query 81 MQNVLVDDRRIHVDFS 96
+++D I VD+
Sbjct 112 ADGLVIDQHEIFVDYE 127
> ath:AT5G19030 RNA recognition motif (RRM)-containing protein
Length=172
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 0/75 (0%)
Query 23 FVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKMQ 82
FV + + + L+ +FS FG++ + II + RT QSL Y ++ F +ED +SA M
Sbjct 80 FVKGFSDSVSEGRLKKVFSEFGQVTNVKIIANERTRQSLGYGYVWFNSKEDAQSAVEAMN 139
Query 83 NVLVDDRRIHVDFSQ 97
D R I V F Q
Sbjct 140 GKFFDGRFILVKFGQ 154
> mmu:100041505 Gm3376; predicted gene 3376
Length=380
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 0/72 (0%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
+F+ LN T+ L+ +F RFG + ++RD T +S +AF+ F+R D ++A +M
Sbjct 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRPADAKNAVKEM 69
Query 82 QNVLVDDRRIHV 93
V++D +RI V
Sbjct 70 NGVILDGKRIKV 81
> mmu:19657 Rbmy1a1, RBM, Rbm1, Rbmy1b; RNA binding motif protein,
Y chromosome, family 1, member A1
Length=380
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 0/72 (0%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
+F+ LN T+ L+ +F RFG + ++RD T +S +AF+ F+R D ++A +M
Sbjct 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEM 69
Query 82 QNVLVDDRRIHV 93
V++D +RI V
Sbjct 70 NGVILDGKRIKV 81
> mmu:100042849 Gm4064; predicted gene 4064
Length=380
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 0/72 (0%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
+F+ LN T+ L+ +F RFG + ++RD T +S +AF+ F+R D ++A +M
Sbjct 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEM 69
Query 82 QNVLVDDRRIHV 93
V++D +RI V
Sbjct 70 NGVILDGKRIKV 81
> mmu:100042881 Gm10352; predicted gene 10352
Length=380
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 0/72 (0%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
+F+ LN T+ L+ +F RFG + ++RD T +S +AF+ F+R D ++A +M
Sbjct 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEM 69
Query 82 QNVLVDDRRIHV 93
V++D +RI V
Sbjct 70 NGVILDGKRIKV 81
> mmu:100042874 Gm10256; predicted gene 10256
Length=380
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 0/72 (0%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
+F+ LN T+ L+ +F RFG + ++RD T +S +AF+ F+R D ++A +M
Sbjct 10 IFIGGLNIKTRQKTLQEIFGRFGPVARVILMRDRETKKSRGFAFLTFRRLADAKNAVKEM 69
Query 82 QNVLVDDRRIHV 93
V++D +RI V
Sbjct 70 NGVILDGKRIKV 81
> ath:AT3G46020 RNA-binding protein, putative
Length=102
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 0/78 (0%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
LFV++L+ T D LR LFS FG+I +IRDS T + + FI F +D A +
Sbjct 9 LFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKSL 68
Query 82 QNVLVDDRRIHVDFSQSV 99
+VD R I V+ +++
Sbjct 69 DGKIVDGRLIFVEVAKNA 86
> dre:394107 tial1, MGC66130, zgc:66130; TIA1 cytotoxic granule-associated
RNA binding protein-like 1; K13201 nucleolysin
TIA-1/TIAR
Length=370
Score = 53.1 bits (126), Expect = 2e-07, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 0/75 (0%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
+FV L+P DD+R F+ FG+I +++D TG+S Y F+ F + D E+A M
Sbjct 98 VFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHM 157
Query 82 QNVLVDDRRIHVDFS 96
+ R+I +++
Sbjct 158 GGQWLGGRQIRTNWA 172
> ath:AT4G39260 GR-RBP8; RNA binding / nucleic acid binding /
nucleotide binding
Length=169
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 0/83 (0%)
Query 15 MAPPENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDC 74
M+ E FV L AT D+DL+ FS+FG+++ II D +G+S + F+ FK +
Sbjct 1 MSEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAM 60
Query 75 ESAFFKMQNVLVDDRRIHVDFSQ 97
A +M +D R I V+ +Q
Sbjct 61 RDAIEEMNGKELDGRVITVNEAQ 83
> hsa:1153 CIRBP, CIRP; cold inducible RNA binding protein; K13195
cold-inducible RNA-binding protein
Length=172
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 0/80 (0%)
Query 15 MAPPENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDC 74
MA E LFV L+ T + L +FS++G+I +++D T +S + F+ F+ +D
Sbjct 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query 75 ESAFFKMQNVLVDDRRIHVD 94
+ A M VD R+I VD
Sbjct 61 KDAMMAMNGKSVDGRQIRVD 80
> dre:793165 tia1, MGC55520, fb73d10, wu:fb73d10, wu:fc02b04,
zgc:55520; cytotoxic granule-associated RNA binding protein
1; K13201 nucleolysin TIA-1/TIAR
Length=386
Score = 52.0 bits (123), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 0/75 (0%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
+FV L+P DD+R F+ FG I +++D TG+S Y F+ F + D E+A +M
Sbjct 98 VFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 157
Query 82 QNVLVDDRRIHVDFS 96
+ R+I +++
Sbjct 158 GGQWLGGRQIRTNWA 172
> xla:379484 cirbp-b, MGC64461, Xcirp, cirbp, cirp, cirp2, xcirp2;
cold inducible RNA binding protein; K13195 cold-inducible
RNA-binding protein
Length=166
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 0/76 (0%)
Query 19 ENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAF 78
E LF+ LN T ++ L +FS++G+I +++D T +S + F+ F+ +D + A
Sbjct 4 EGKLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAM 63
Query 79 FKMQNVLVDDRRIHVD 94
M VD R+I VD
Sbjct 64 MAMNGKAVDGRQIRVD 79
> ath:AT2G46780 RNA binding / nucleic acid binding / nucleotide
binding
Length=336
Score = 52.0 bits (123), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/75 (38%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
+FV L TQ D +R F +FGEIV +I D TG+S Y F+ FK E A M
Sbjct 24 IFVGGLAWETQRDTMRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFKEAEAAMRACQNM 83
Query 82 QNVLVDDRRIHVDFS 96
N ++D RR + + +
Sbjct 84 -NPVIDGRRANCNLA 97
> xla:495336 hypothetical LOC495336
Length=711
Score = 51.6 bits (122), Expect = 5e-07, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 0/76 (0%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
L+V L+P DD LR+ FS G + + RD + +SL Y ++ F+ +D E A +M
Sbjct 4 LYVGDLHPDINDDQLRMKFSEIGPVAVAHVCRDVTSRKSLGYGYVNFEDPKDAERALEQM 63
Query 82 QNVLVDDRRIHVDFSQ 97
+V R I + +SQ
Sbjct 64 NYEVVMGRPIRIMWSQ 79
Score = 43.9 bits (102), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query 20 NVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFF 79
N ++V P T D+ L+ +F+ FGEI S +++DS G+S + F+ + E E+A
Sbjct 181 NNIYVKNFPPETDDEKLKEMFTEFGEIKSACVMKDSE-GKSKGFGFVCYLNPEHAEAAVA 239
Query 80 KMQNVLVDDRRIHVDFSQ 97
M + R ++ +Q
Sbjct 240 AMHGKEIGGRSLYASRAQ 257
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
+F+ L + +L FS FG I+SC I D G S Y F+ F+ E + A K+
Sbjct 92 IFIKNLAKTIEQKELYDTFSLFGRILSCKIAMD-ENGNSKGYGFVHFENEECAKRAIQKV 150
Query 82 QNVLVDDRRIHV 93
N+ + + ++V
Sbjct 151 NNMSICGKVVYV 162
Score = 32.3 bits (72), Expect = 0.41, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
L+V L+ D+ L+ +FS++G I S ++ DS +S + F+ F E A +
Sbjct 287 LYVKNLDDEIDDERLKEIFSKYGPISSAKVMTDS-NNRSKGFGFVCFTNPEQATKAVTEA 345
Query 82 QNVLVDDRRIHVDFSQ 97
+ + ++V +Q
Sbjct 346 NGRVEYSKPLYVAIAQ 361
> dre:431719 elavl2, zgc:91918; ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B); K13208 ELAV like
protein 2/3/4
Length=360
Score = 51.6 bits (122), Expect = 6e-07, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 0/76 (0%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
L V L ++L+ LF GEI SC ++RD TGQSL Y F+ + +D E A +
Sbjct 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTL 100
Query 82 QNVLVDDRRIHVDFSQ 97
+ + + I V +++
Sbjct 101 NGLRLQTKTIKVSYAR 116
Score = 41.6 bits (96), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 0/56 (0%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESA 77
L+V+ L +L LFS+FG I++ I+ D TG S FI F RR + E A
Sbjct 127 LYVSGLPKTMTQKELEQLFSQFGRIITSRILVDQVTGVSRGVGFIRFDRRVEAEEA 182
Score = 36.6 bits (83), Expect = 0.022, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 0/74 (0%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
+FV L P ++ L +F FG + + +IRD T + + F+ ++ A +
Sbjct 279 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 338
Query 82 QNVLVDDRRIHVDF 95
+ DR + V F
Sbjct 339 NGYRLGDRVLQVSF 352
> dre:562370 puf60a, fc21a05, wu:fc21a05, wu:fi43a08; poly-U binding
splicing factor a; K12838 poly(U)-binding-splicing factor
PUF60
Length=518
Score = 51.6 bits (122), Expect = 6e-07, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 0/69 (0%)
Query 13 ADMAPPENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRRE 72
A+ A N ++VA ++P DDD++ +F FG I SC + RD TG+ Y FI + + +
Sbjct 182 AEEARAFNRIYVASVHPDLSDDDIKSVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQ 241
Query 73 DCESAFFKM 81
+ A M
Sbjct 242 SAQDAVSSM 250
Score = 35.8 bits (81), Expect = 0.038, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 0/72 (0%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
++V + +D +R F+ FG I S D+ DS T + +AF+ ++ E + A +M
Sbjct 94 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQM 153
Query 82 QNVLVDDRRIHV 93
+V++ R I V
Sbjct 154 NSVMLGGRNIKV 165
> xla:447602 MGC84815 protein
Length=291
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query 4 LEILGDIPDADMAPPENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQY 63
+ +GD P AD + LFV LNP T +D LR +S++GEI +++D R+ +S +
Sbjct 1 MRQVGD-PKADQ---DKKLFVGGLNPKTNEDSLRAYYSQWGEITDVVVMKDPRSNKSRGF 56
Query 64 AFIGFKRREDCESA 77
F+ FK + A
Sbjct 57 GFVTFKEASSVDKA 70
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 0/47 (0%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGF 68
+FV L ++DL F +FG + I+ T S +AF+ F
Sbjct 105 IFVGGLKKDVTNEDLAEYFGKFGNVTDASIVVAKDTNTSRGFAFVTF 151
> mmu:12696 Cirbp, Cirp, R74941; cold inducible RNA binding protein;
K13195 cold-inducible RNA-binding protein
Length=172
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 0/80 (0%)
Query 15 MAPPENVLFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDC 74
MA E LFV L+ T + L +FS++G+I +++D T +S + F+ F+ +D
Sbjct 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query 75 ESAFFKMQNVLVDDRRIHVD 94
+ A M VD R+I VD
Sbjct 61 KDAMMAMNGKSVDGRQIRVD 80
> ath:AT5G64200 ATSC35; ATSC35; RNA binding / nucleic acid binding
/ nucleotide binding; K12891 splicing factor, arginine/serine-rich
2
Length=303
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 0/67 (0%)
Query 31 TQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKMQNVLVDDRR 90
T DDL LF+++G++V I RD RTG S +AF+ +K +++ A ++ +VD R
Sbjct 27 TTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYKDEAHKAVERLDGRVVDGRE 86
Query 91 IHVDFSQ 97
I V F++
Sbjct 87 ITVQFAK 93
> xla:100381100 tial1, tcbp, tiar; TIA1 cytotoxic granule-associated
RNA binding protein-like 1; K13201 nucleolysin TIA-1/TIAR
Length=385
Score = 51.2 bits (121), Expect = 8e-07, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 0/75 (0%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
+FV L+P DD++ F+ FG I +++D TG+S Y F+ F + D E+A +M
Sbjct 108 VFVGDLSPEISTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQM 167
Query 82 QNVLVDDRRIHVDFS 96
+ R+I +++
Sbjct 168 GGQWLGGRQIRTNWA 182
> xla:447385 tia1, MGC84540, tia-1; TIA1 cytotoxic granule-associated
RNA binding protein; K13201 nucleolysin TIA-1/TIAR
Length=389
Score = 51.2 bits (121), Expect = 9e-07, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 0/75 (0%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
+FV L+P DD++ F+ FG I +++D TG+S Y F+ F + D E+A +M
Sbjct 108 VFVGDLSPEITTDDIKAAFAPFGRISDARVVKDMTTGKSKGYGFVSFFNKWDAENAIAQM 167
Query 82 QNVLVDDRRIHVDFS 96
+ R+I +++
Sbjct 168 GGQWLGGRQIRTNWA 182
> tgo:TGME49_024580 splicing factor, putative (EC:3.1.2.15); K12831
splicing factor 3B subunit 4
Length=576
Score = 51.2 bits (121), Expect = 9e-07, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 0/75 (0%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
+F+ L+P + + FS FG I+S I+RD TG S + F+ F E ++A M
Sbjct 118 VFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAM 177
Query 82 QNVLVDDRRIHVDFS 96
+ +R IHV ++
Sbjct 178 NGQFICNRPIHVSYA 192
Score = 35.8 bits (81), Expect = 0.031, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
L++ L+ DD L LF + G + + + RD TG Y F+ F+ D + A K+
Sbjct 31 LYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYA-LKL 89
Query 82 QNVL 85
N++
Sbjct 90 MNMV 93
> cel:Y46G5A.13 hypothetical protein; K13201 nucleolysin TIA-1/TIAR
Length=434
Score = 50.8 bits (120), Expect = 9e-07, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Query 11 PDADMAPPENV----LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFI 66
P + + PE +FV L LR F +FGE+ IIRD+ T + Y F+
Sbjct 119 PGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEVSEAKIIRDNNTNKGKGYGFV 178
Query 67 GFKRREDCESAFFKMQNVLVDDRRIHVDFS 96
+ RRED E A +M + R I +++
Sbjct 179 SYPRREDAERAIDEMNGAWLGRRTIRTNWA 208
Score = 34.7 bits (78), Expect = 0.073, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
LFVA L+PA D+ L LF++ G ++ II + G + YAF+ F A
Sbjct 42 LFVANLDPAITDEFLATLFNQIGAVMKAKIIFE---GLNDPYAFVEFSDHNQATLALQSH 98
Query 82 QNVLVDDRRIHVDFS 96
+ ++ +HV ++
Sbjct 99 NGRELLEKEMHVTWA 113
Score = 32.7 bits (73), Expect = 0.29, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
Query 33 DDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKMQNVLVDDRRIH 92
+D++R F RFG I + RT + YAF+ F+ +E A +M N + + +
Sbjct 268 EDEIRRAFDRFGPI------NEVRTFKIQGYAFVKFETKESAARAIVQMNNADIGGQIVR 321
Query 93 VDFSQS 98
+ +S
Sbjct 322 CSWGKS 327
> mmu:66704 Rbm4b, 4921506I22Rik, AI504630, AI506404, Lark2, MGC115931;
RNA binding motif protein 4B; K13187 RNA-binding protein
4
Length=357
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
L V ++P + +LR F +G ++ CDI++D YAF+ +R ED A +
Sbjct 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGL 131
Query 82 QNVLVDDRRIHVDFSQS 98
N +R+HV S S
Sbjct 132 DNTEFQGKRMHVQLSTS 148
Score = 35.8 bits (81), Expect = 0.031, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
LF+ L + ++R LF ++G+++ CDII++ Y F+ + + E A +
Sbjct 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55
Query 82 QNVLVDDRRIHVDFSQS 98
+ + I+V+ S++
Sbjct 56 HHYKLHGVNINVEASKN 72
> mmu:19653 Rbm4, 4921506I22Rik, Lark1, Mlark, Rbm4a, lark; RNA
binding motif protein 4; K13187 RNA-binding protein 4
Length=361
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
L V ++P + +LR F +G ++ CDI++D YAF+ +R ED A +
Sbjct 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGL 131
Query 82 QNVLVDDRRIHVDFSQS 98
N +R+HV S S
Sbjct 132 DNTEFQGKRMHVQLSTS 148
Score = 35.8 bits (81), Expect = 0.031, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
LF+ L + ++R LF ++G+++ CDII++ Y F+ + + E A +
Sbjct 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55
Query 82 QNVLVDDRRIHVDFSQS 98
+ + I+V+ S++
Sbjct 56 HHYKLHGVNINVEASKN 72
> hsa:83759 RBM4B, MGC10871, RBM30, RBM4L, ZCCHC15, ZCRB3B; RNA
binding motif protein 4B; K13187 RNA-binding protein 4
Length=359
Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
L V ++P + +LR F +G ++ CDI++D YAF+ +R ED A +
Sbjct 80 LHVGNISPTCTNQELRAKFEEYGPVIECDIVKD--------YAFVHMERAEDAVEAIRGL 131
Query 82 QNVLVDDRRIHVDFSQS 98
N +R+HV S S
Sbjct 132 DNTEFQGKRMHVQLSTS 148
Score = 35.8 bits (81), Expect = 0.031, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 8/77 (10%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
LF+ L + ++R LF ++G+++ CDII++ Y F+ + + E A +
Sbjct 4 LFIGNLPREATEQEIRSLFEQYGKVLECDIIKN--------YGFVHIEDKTAAEDAIRNL 55
Query 82 QNVLVDDRRIHVDFSQS 98
+ + I+V+ S++
Sbjct 56 HHYKLHGVNINVEASKN 72
> dre:100332416 ELAV-like 2-like
Length=116
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 0/71 (0%)
Query 22 LFVAKLNPATQDDDLRLLFSRFGEIVSCDIIRDSRTGQSLQYAFIGFKRREDCESAFFKM 81
L V L ++L+ LF GEI SC ++RD TGQSL Y F+ + +D E A +
Sbjct 46 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAEKAINTL 105
Query 82 QNVLVDDRRIH 92
+ + + I
Sbjct 106 NGLRLQTKTIK 116
Lambda K H
0.325 0.141 0.409
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2046143372
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40