bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_5408_orf1
Length=123
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_111870 WD repeat protein, putative (EC:3.1.2.15); K... 135 4e-32
tpv:TP02_0670 hypothetical protein; K14848 ribosome assembly p... 123 2e-28
bbo:BBOV_II006970 18.m06577; WD domain, G-beta repeat containi... 121 6e-28
xla:380320 grwd1, MGC53574, grwd; glutamate-rich WD repeat con... 115 5e-26
xla:444441 MGC83609 protein; K14848 ribosome assembly protein ... 108 3e-24
mmu:101612 Grwd1, A301, AI504353, Grwd, Wdr28; glutamate-rich ... 105 5e-23
cel:Y54H5A.1 hypothetical protein; K14848 ribosome assembly pr... 103 1e-22
hsa:83743 GRWD1, CDW4, GRWD, KIAA1942, RRB1, WDR28; glutamate-... 102 3e-22
dre:445115 grwd1, cb447, sb:cb447, zgc:92443; glutamate-rich W... 99.4 2e-21
cpv:cgd4_3360 WD repeat protein ; K14848 ribosome assembly pro... 95.1 5e-20
pfa:PF08_0065 nucleolar preribosomal assembly protein, putativ... 93.2 2e-19
ath:AT2G19540 transducin family protein / WD-40 repeat family ... 86.3 2e-17
sce:YMR131C RRB1; Essential nuclear protein involved in early ... 79.3 2e-15
ath:AT2G16780 MSI2; MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2); K10... 62.4 4e-10
dre:322129 rbb4l, Caf1, rbbp7, wu:fa13g08, wu:fb50h10, wu:fc29... 60.5 1e-09
xla:399131 rbbp4-a, MGC79922, nurf55, rbap48, rbbp4, xrbbp4; r... 60.1 2e-09
hsa:5928 RBBP4, NURF55, RBAP48; retinoblastoma binding protein... 60.1 2e-09
xla:432269 rbbp4-b, MGC82618, nurf55, rbap48, xrbbp4; retinobl... 60.1 2e-09
mmu:19646 Rbbp4, mRbAp48; retinoblastoma binding protein 4; K1... 60.1 2e-09
dre:321726 rbb4, RBBP4, rbb4-2, wu:fb33a09, wu:fb40e10, zgc:55... 60.1 2e-09
cel:K07A1.12 lin-53; abnormal cell LINeage family member (lin-... 60.1 2e-09
xla:380056 rbbp7, MGC53418; retinoblastoma binding protein 7; ... 60.1 2e-09
mmu:245688 Rbbp7, AA409861, AI173248, AU019541, BB114024, mRbA... 59.7 2e-09
hsa:5931 RBBP7, MGC138867, MGC138868, RbAp46; retinoblastoma b... 59.3 3e-09
ath:AT4G35050 MSI3; MSI3 (MULTICOPY SUPPRESSOR OF IRA1 3); pro... 58.5 5e-09
ath:AT5G58230 MSI1; MSI1 (MULTICOPY SUPRESSOR OF IRA1); protei... 56.2 3e-08
bbo:BBOV_IV011040 23.m06093; retinoblastoma A associated prote... 55.1 6e-08
sce:YEL056W HAT2; Hat2p (EC:2.3.1.48); K10752 histone-binding ... 54.3 8e-08
ath:AT2G19520 FVE; FVE; metal ion binding; K10752 histone-bind... 52.0 5e-07
pfa:PF13_0149 chromatin assembly factor 1 subunit, putative 49.7 2e-06
tgo:TGME49_064820 WD-40 repeat protein, putative 48.1 6e-06
dre:406336 wdr24, wu:fd05f12, zgc:55946; WD repeat domain 24 47.4
pfa:PFA_0520c chromatin assembly factor 1 protein WD40 domain,... 47.0 1e-05
ath:AT4G29730 NFC5; NFC5 (Nucleosome/chromatin assembly factor... 46.2 2e-05
hsa:84219 WDR24, C16orf21, DKFZp434F054, JFP7; WD repeat domai... 45.4 5e-05
mmu:268933 Wdr24, BC037651, MGC47001; WD repeat domain 24 45.1
xla:380357 wdr24, MGC47001, MGC53421; WD repeat domain 24 45.1
cel:K07A1.11 rba-1; RbAp48 related family member (rba-1); K107... 43.5 2e-04
hsa:92715 WDR85, C9orf112, FLJ90634, RP11-48C7.3; WD repeat do... 43.5 2e-04
mmu:319481 Wdr59, 5430401O09Rik, Cdw12; WD repeat domain 59 43.1
cpv:cgd5_740 WD repeat protein ; K10752 histone-binding protei... 42.7 3e-04
cel:R06A4.9 hypothetical protein 42.0 4e-04
hsa:79726 WDR59, FLJ12270, MGC11230; WD repeat domain 59 41.6
ath:AT3G63460 WD-40 repeat family protein; K14005 protein tran... 41.2 7e-04
xla:779293 nup43, MGC154553; nucleoporin 43kDa; K14305 nuclear... 41.2 0.001
mmu:71991 Ercc8, 2410022P04Rik, 2810431L23Rik, 4631412O06Rik, ... 40.8 0.001
sce:YPL247C Putative protein of unknown function; green fluore... 40.4 0.001
tgo:TGME49_078280 WD-40 repeat-containing protein ; K10752 his... 39.7 0.002
dre:260439 copa, cb281, fb13c12, wu:fb13c12; coatomer protein ... 39.7 0.002
dre:326944 prpf4, mg:ab03a02, zgc:65943; PRP4 pre-mRNA process... 39.7 0.003
> tgo:TGME49_111870 WD repeat protein, putative (EC:3.1.2.15);
K14848 ribosome assembly protein RRB1
Length=535
Score = 135 bits (339), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 85/127 (66%), Gaps = 10/127 (7%)
Query 7 NLVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWD 66
+L+L+G E+G V D R ++PL + WHKKPIT V+WHP++E FA +SLDDS+ WD
Sbjct 405 DLLLSGDEDGCVKVWDERYGEVPLVVMQWHKKPITSVDWHPTDEATFATSSLDDSVALWD 464
Query 67 LSVEREEPAEVQTAAA----------AVPEQLMFVHGGQQQISEFHFHPQIPGFVAATAS 116
+SVE +E AE + A +PEQLMFVH GQ+ ISE FHPQIPG V +TA
Sbjct 465 MSVEIDEDAEERDRGAKQMEAEKNDDKMPEQLMFVHMGQEHISEIKFHPQIPGVVISTAC 524
Query 117 DGFSIFK 123
DGF+ FK
Sbjct 525 DGFNFFK 531
> tpv:TP02_0670 hypothetical protein; K14848 ribosome assembly
protein RRB1
Length=446
Score = 123 bits (308), Expect = 2e-28, Method: Composition-based stats.
Identities = 56/117 (47%), Positives = 77/117 (65%), Gaps = 5/117 (4%)
Query 7 NLVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWD 66
NLVL G E+G V DLR P+ L+ + WHKK ITCV+WHP + V + + DDS++ WD
Sbjct 330 NLVLTGSEDGSVKIFDLRYPETYLSNLKWHKKAITCVDWHPLDSSVCSVSCRDDSISIWD 389
Query 67 LSVEREEPAEVQTAAAAVPEQLMFVHGGQQQISEFHFHPQIPGFVAATASDGFSIFK 123
+S+E E + +P+QL+F+H GQ +I+E FH IPG V +TA DGF+IFK
Sbjct 390 VSIEAESATN-----SDIPQQLLFLHMGQTEITELMFHRNIPGVVISTALDGFNIFK 441
> bbo:BBOV_II006970 18.m06577; WD domain, G-beta repeat containing
protein; K14848 ribosome assembly protein RRB1
Length=430
Score = 121 bits (303), Expect = 6e-28, Method: Composition-based stats.
Identities = 55/117 (47%), Positives = 78/117 (66%), Gaps = 0/117 (0%)
Query 7 NLVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWD 66
NL+ G + G DLR P+ +A++ WHK+PIT + WHP++ V A+S DDS++ WD
Sbjct 309 NLLATGDDTGAGTIFDLRFPEEHVAKLIWHKEPITSIAWHPTDPAVCIASSRDDSVSIWD 368
Query 67 LSVEREEPAEVQTAAAAVPEQLMFVHGGQQQISEFHFHPQIPGFVAATASDGFSIFK 123
+SVE E E+Q + +P+QLMF+H GQ +I+E FH QIPG T+ DGF+IFK
Sbjct 369 MSVESESVDELQESEQKIPQQLMFLHMGQTEITEVMFHKQIPGVAITTSVDGFNIFK 425
> xla:380320 grwd1, MGC53574, grwd; glutamate-rich WD repeat containing
1; K14848 ribosome assembly protein RRB1
Length=430
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 87/128 (67%), Gaps = 6/128 (4%)
Query 1 FSFQNPNLVLAGLEEGLVVATDLRCPQ--MPLAQIDWHKKPITCVEWHPSEEGVFAAASL 58
++ Q P +++G ++G++ DLR Q + +A+ HK PIT VEWHP++ GVFAA+
Sbjct 300 WNHQEP-FIVSGGDDGVLKIWDLRQFQKGVSVAKFKQHKAPITSVEWHPTDSGVFAASGA 358
Query 59 DDSLTFWDLSVEREEPAEVQT---AAAAVPEQLMFVHGGQQQISEFHFHPQIPGFVAATA 115
DD +T WDL+VER++ E +T A A +P QL+FVH G++ I E H+HPQ PG V +TA
Sbjct 359 DDQITQWDLAVERDQDQEEETEDPALAGIPPQLLFVHQGEKDIKELHWHPQCPGIVISTA 418
Query 116 SDGFSIFK 123
GF++F+
Sbjct 419 LSGFNVFR 426
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 0/31 (0%)
Query 36 HKKPITCVEWHPSEEGVFAAASLDDSLTFWD 66
H K + ++W P+E VFA+ S+D S+ WD
Sbjct 244 HTKSVEDLQWSPTEATVFASCSVDASIRIWD 274
> xla:444441 MGC83609 protein; K14848 ribosome assembly protein
RRB1
Length=466
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 85/128 (66%), Gaps = 6/128 (4%)
Query 1 FSFQNPNLVLAGLEEGLVVATDLRCPQ--MPLAQIDWHKKPITCVEWHPSEEGVFAAASL 58
++ Q P +++G ++G++ DLR Q + +A+ H PIT VEWHP++ GVFAA+
Sbjct 336 WNRQEP-FIVSGGDDGVLKIWDLRQFQKGVSVAKFKQHTGPITSVEWHPTDSGVFAASGA 394
Query 59 DDSLTFWDLSVEREEPAEVQT---AAAAVPEQLMFVHGGQQQISEFHFHPQIPGFVAATA 115
DD +T WDL+VER++ E +T A A +P QL+FVH G++ I E H+H Q PG V +TA
Sbjct 395 DDQITQWDLAVERDQDQEEETEDPALAGIPPQLLFVHQGEKDIKELHWHHQCPGIVISTA 454
Query 116 SDGFSIFK 123
GF++F+
Sbjct 455 LSGFNVFR 462
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 0/32 (0%)
Query 36 HKKPITCVEWHPSEEGVFAAASLDDSLTFWDL 67
H K + ++W P+E VFA+ S+D S+ WD+
Sbjct 280 HTKSVEDLQWSPTEATVFASCSVDASIRIWDI 311
> mmu:101612 Grwd1, A301, AI504353, Grwd, Wdr28; glutamate-rich
WD repeat containing 1; K14848 ribosome assembly protein RRB1
Length=446
Score = 105 bits (261), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 53/121 (43%), Positives = 78/121 (64%), Gaps = 5/121 (4%)
Query 8 LVLAGLEEGLVVATDLR--CPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFW 65
+L+G ++G + DLR P+A H P+T VEWHP + GVFAA+ D+ +T W
Sbjct 322 FLLSGGDDGALKVWDLRQFKSGSPVATFKQHMAPVTSVEWHPQDSGVFAASGADNQITQW 381
Query 66 DLSVERE-EPAEVQT--AAAAVPEQLMFVHGGQQQISEFHFHPQIPGFVAATASDGFSIF 122
DL+VER+ E E +T AA+P+QL+FVH G+ + E H+HPQ PG + +TA GF++F
Sbjct 382 DLAVERDPESGETETDPGLAALPQQLLFVHQGETDLKELHWHPQCPGVLISTALSGFTVF 441
Query 123 K 123
+
Sbjct 442 R 442
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 0/47 (0%)
Query 36 HKKPITCVEWHPSEEGVFAAASLDDSLTFWDLSVEREEPAEVQTAAA 82
H + + ++W P+E+ VFA+ S D S+ WD+ + + TA A
Sbjct 260 HTRSVEDLQWSPTEDTVFASCSADASIRIWDIRAAPGKACMLTTATA 306
> cel:Y54H5A.1 hypothetical protein; K14848 ribosome assembly
protein RRB1
Length=453
Score = 103 bits (258), Expect = 1e-22, Method: Composition-based stats.
Identities = 51/122 (41%), Positives = 73/122 (59%), Gaps = 6/122 (4%)
Query 4 QNPNLVLAGLEEGLVVATDLRCPQM--PLAQIDWHKKPITCVEWHPSEEGVFAAASLDDS 61
++ NL+++G ++G + L+ Q P+A +H PIT V+WHP E F A+ DD
Sbjct 332 RHENLIVSGGDDGELKIWSLKTIQFGQPVALFKYHNSPITSVDWHPHETTTFMASGEDDQ 391
Query 62 LTFWDLSVEREEPAEVQTAAAAVPEQLMFVHGGQQQISEFHFHPQIPGFVAATASDGFSI 121
T WD++ E A+ QT VP QLMFVH GQ ++ E H+H QIPG T+ DGF++
Sbjct 392 TTIWDIATE----ADGQTNIEGVPPQLMFVHMGQNEVKEVHWHQQIPGLAINTSIDGFNV 447
Query 122 FK 123
FK
Sbjct 448 FK 449
Score = 35.4 bits (80), Expect = 0.040, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 0/31 (0%)
Query 36 HKKPITCVEWHPSEEGVFAAASLDDSLTFWD 66
HKK + + W P+E G+ A+ S D S+ WD
Sbjct 274 HKKSVEDLAWSPTETGLLASCSADGSIKLWD 304
> hsa:83743 GRWD1, CDW4, GRWD, KIAA1942, RRB1, WDR28; glutamate-rich
WD repeat containing 1; K14848 ribosome assembly protein
RRB1
Length=446
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 75/120 (62%), Gaps = 5/120 (4%)
Query 9 VLAGLEEGLVVATDLR--CPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWD 66
+L+G ++G + DLR P+A H P+T VEWHP + GVFAA+ D +T WD
Sbjct 323 LLSGGDDGALKIWDLRQFKSGSPVATFKQHVAPVTSVEWHPQDSGVFAASGADHQITQWD 382
Query 67 LSVEREEPA---EVQTAAAAVPEQLMFVHGGQQQISEFHFHPQIPGFVAATASDGFSIFK 123
L+VER+ A E A +P+QL+FVH G+ ++ E H+HPQ PG + +TA GF+IF+
Sbjct 383 LAVERDPEAGDVEADPGLADLPQQLLFVHQGETELKELHWHPQCPGLLVSTALSGFTIFR 442
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 0/47 (0%)
Query 36 HKKPITCVEWHPSEEGVFAAASLDDSLTFWDLSVEREEPAEVQTAAA 82
H + + ++W P+E VFA+ S D S+ WD+ + + TA A
Sbjct 260 HTRSVEDLQWSPTENTVFASCSADASIRIWDIRAAPSKACMLTTATA 306
> dre:445115 grwd1, cb447, sb:cb447, zgc:92443; glutamate-rich
WD repeat containing 1; K14848 ribosome assembly protein RRB1
Length=433
Score = 99.4 bits (246), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
Query 8 LVLAGLEEGLVVATDLRCPQ--MPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFW 65
+L+G ++GL+ DLR Q P+A H P+T V+W P + VFAA+ DD ++ W
Sbjct 312 FILSGGDDGLLKVWDLRQFQSGRPVASFKQHSAPVTSVQWSPVDSSVFAASGADDVISQW 371
Query 66 DLSVEREEPAEVQTAAAAVPEQLMFVHGGQQQISEFHFHPQIPGFVAATASDGFSIFK 123
DLSVE + +P QL+F+H GQ+++ E H+HPQIPG + +TA GF+IF+
Sbjct 372 DLSVESCDMGGQAEDVKQLPPQLLFLHQGQKEVKELHWHPQIPGVLISTALSGFNIFR 429
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 0/32 (0%)
Query 36 HKKPITCVEWHPSEEGVFAAASLDDSLTFWDL 67
H K + ++W P+E VFA+ S+D S+ WD+
Sbjct 252 HSKSVEDLQWSPTEATVFASCSVDQSIRIWDI 283
> cpv:cgd4_3360 WD repeat protein ; K14848 ribosome assembly protein
RRB1
Length=500
Score = 95.1 bits (235), Expect = 5e-20, Method: Composition-based stats.
Identities = 45/125 (36%), Positives = 80/125 (64%), Gaps = 9/125 (7%)
Query 7 NLVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWD 66
NL+L+G ++ + D+R + PL +H++PI V+WH ++ VF AASLD+S++FWD
Sbjct 371 NLLLSGSDDATIKLWDIRSTKDPLETFIFHREPILSVDWHHQDQDVFLAASLDNSISFWD 430
Query 67 LSVE----REEPAEVQTAAAA-----VPEQLMFVHGGQQQISEFHFHPQIPGFVAATASD 117
++++ E+ ++ +T A +P++L+F+H GQ+ I+E +H QIP +TA D
Sbjct 431 IAIDDEVIDEDNSDSKTDATLSGTPNIPKKLLFLHMGQEHIAEAKWHKQIPSLTISTAQD 490
Query 118 GFSIF 122
F++F
Sbjct 491 SFNVF 495
> pfa:PF08_0065 nucleolar preribosomal assembly protein, putative;
K14848 ribosome assembly protein RRB1
Length=491
Score = 93.2 bits (230), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/116 (37%), Positives = 74/116 (63%), Gaps = 3/116 (2%)
Query 8 LVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDL 67
L+ +G ++ ++ D+R +AQ+ +HK+PI+ + W+ + V A+SLD+S++ WDL
Sbjct 375 LLASGGDDNIIKVWDIRNTNNAVAQLIFHKQPISSISWNFKDTYVLLASSLDNSISIWDL 434
Query 68 SVEREEPAEVQTAAAAVPEQLMFVHGGQQQISEFHFHPQIPGFVAATASDGFSIFK 123
SVE E ++ + P+QL+F H Q+ I++ FHP PG V +T+S+ F+IFK
Sbjct 435 SVETE---SLEFTDSKYPDQLLFEHLNQKFITDAKFHPHYPGLVVSTSSENFNIFK 487
> ath:AT2G19540 transducin family protein / WD-40 repeat family
protein; K14848 ribosome assembly protein RRB1
Length=469
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 68/127 (53%), Gaps = 12/127 (9%)
Query 8 LVLAGLEEGLVVATDLRCPQ---MPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTF 64
++ +G ++G DLR + +A ++HK PIT +EW E A S D+ LT
Sbjct 328 MLASGSDDGTFSIRDLRLIKGGDAVVAHFEYHKHPITSIEWSAHEASTLAVTSGDNQLTI 387
Query 65 WDLSVE---------REEPAEVQTAAAAVPEQLMFVHGGQQQISEFHFHPQIPGFVAATA 115
WDLS+E + E+ +P QL+FVH GQ+ + E H+H QIPG + +TA
Sbjct 388 WDLSLEKDEEEEAEFNAQTKELVNTPQDLPPQLLFVHQGQKDLKELHWHNQIPGMIISTA 447
Query 116 SDGFSIF 122
DGF+I
Sbjct 448 GDGFNIL 454
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 0/36 (0%)
Query 36 HKKPITCVEWHPSEEGVFAAASLDDSLTFWDLSVER 71
H + ++W P+EE VFA+ S+D S+ WD+ + +
Sbjct 268 HTASVEDLQWSPAEENVFASCSVDGSVAVWDIRLGK 303
> sce:YMR131C RRB1; Essential nuclear protein involved in early
steps of ribosome biogenesis; physically interacts with the
ribosomal protein Rpl3p; K14848 ribosome assembly protein
RRB1
Length=511
Score = 79.3 bits (194), Expect = 2e-15, Method: Composition-based stats.
Identities = 39/100 (39%), Positives = 64/100 (64%), Gaps = 6/100 (6%)
Query 29 PLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDLSVEREEPAEVQTAAAA----- 83
P+AQ D+HK IT + ++P +E + A S D+++T WDLSVE ++ Q AA
Sbjct 409 PVAQYDFHKGAITSIAFNPLDESIVAVGSEDNTVTLWDLSVEADDEEIKQQAAETKELQE 468
Query 84 VPEQLMFVHGGQQQISEFHFHPQIPGFVAATASDGFSIFK 123
+P QL+FVH Q+++ + +H QIPG + +T +DG +++K
Sbjct 469 IPPQLLFVH-WQKEVKDVKWHKQIPGCLVSTGTDGLNVWK 507
Score = 31.2 bits (69), Expect = 0.74, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 0/40 (0%)
Query 36 HKKPITCVEWHPSEEGVFAAASLDDSLTFWDLSVEREEPA 75
+ K I ++W +E VFA A D + WD ++ +PA
Sbjct 320 NNKSIEDIQWSRTESTVFATAGCDGYIRIWDTRSKKHKPA 359
> ath:AT2G16780 MSI2; MSI2 (MULTICOPY SUPPRESSOR OF IRA1 2); K10752
histone-binding protein RBBP4
Length=415
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 2/112 (1%)
Query 9 VLAGLEEGLVVAT-DLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDL 67
VLA VA DLR PL + H+ + VEW P+ E V A++ D L WDL
Sbjct 275 VLATASSDSTVALFDLRKLNAPLHVMSSHEGEVFQVEWDPNHETVLASSGEDRRLMVWDL 334
Query 68 SVEREEPAEVQTAAAAVPEQLMFVHGGQQ-QISEFHFHPQIPGFVAATASDG 118
+ EE E++ A P +L+F HGG + +IS+F ++ P +A+ A D
Sbjct 335 NRVGEEQLEIELDAEDGPPELLFSHGGHKAKISDFAWNKNEPWVIASVAEDN 386
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 9/83 (10%)
Query 36 HKKPITCVEWHPSEEGVFAAASLDDSLTFWDLSVEREEPAEVQTAAAAVPEQLMFVHGGQ 95
H K + W P +EG + S D + WD+S T V + G +
Sbjct 167 HDKEGYGLSWSPFKEGYLLSGSQDQKICLWDVSA---------TPQDKVLNAMFVYEGHE 217
Query 96 QQISEFHFHPQIPGFVAATASDG 118
I++ +H + + DG
Sbjct 218 SAIADVSWHMKNENLFGSAGEDG 240
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 0/31 (0%)
Query 36 HKKPITCVEWHPSEEGVFAAASLDDSLTFWD 66
H+ I V WH E +F +A D L WD
Sbjct 216 HESAIADVSWHMKNENLFGSAGEDGRLVIWD 246
> dre:322129 rbb4l, Caf1, rbbp7, wu:fa13g08, wu:fb50h10, wu:fc29d09,
zgc:56477, zgc:85617; retinoblastoma binding protein
4, like; K10752 histone-binding protein RBBP4
Length=426
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query 8 LVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDL 67
++ G + V DLR ++ L + HK I V+W P E + A++ D L WDL
Sbjct 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query 68 S-VEREEPAEVQTAAAAVPEQLMFVHGGQQ-QISEFHFHPQIPGFVAATASDGF 119
S + E+ AE A P +L+F+HGG +IS+F ++P P + + + D
Sbjct 348 SKIGEEQSAE---DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 398
> xla:399131 rbbp4-a, MGC79922, nurf55, rbap48, rbbp4, xrbbp4;
retinoblastoma binding protein 4; K10752 histone-binding protein
RBBP4
Length=425
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query 8 LVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDL 67
++ G + V DLR ++ L + HK I V+W P E + A++ D L WDL
Sbjct 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query 68 SV--EREEPAEVQTAAAAVPEQLMFVHGGQQ-QISEFHFHPQIPGFVAATASDGF 119
S E + P + + P +L+F+HGG +IS+F ++P P + + + D
Sbjct 348 SKIGEEQSPEDAEDG----PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 398
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 0/40 (0%)
Query 29 PLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDLS 68
P ++ H+K + W+P+ G +AS D ++ WD+S
Sbjct 169 PNLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICLWDIS 208
> hsa:5928 RBBP4, NURF55, RBAP48; retinoblastoma binding protein
4; K10752 histone-binding protein RBBP4
Length=424
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query 8 LVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDL 67
++ G + V DLR ++ L + HK I V+W P E + A++ D L WDL
Sbjct 287 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 346
Query 68 SV--EREEPAEVQTAAAAVPEQLMFVHGGQQ-QISEFHFHPQIPGFVAATASDGF 119
S E + P + + P +L+F+HGG +IS+F ++P P + + + D
Sbjct 347 SKIGEEQSPEDAEDG----PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 397
> xla:432269 rbbp4-b, MGC82618, nurf55, rbap48, xrbbp4; retinoblastoma
binding protein 4; K10752 histone-binding protein RBBP4
Length=425
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query 8 LVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDL 67
++ G + V DLR ++ L + HK I V+W P E + A++ D L WDL
Sbjct 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query 68 SV--EREEPAEVQTAAAAVPEQLMFVHGGQQ-QISEFHFHPQIPGFVAATASDGF 119
S E + P + + P +L+F+HGG +IS+F ++P P + + + D
Sbjct 348 SKIGEEQSPEDAEDG----PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 398
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 0/40 (0%)
Query 29 PLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDLS 68
P ++ H+K + W+P+ G +AS D ++ WD+S
Sbjct 169 PDLRLRGHQKEGYGLSWNPNLSGNLLSASDDHTICLWDIS 208
> mmu:19646 Rbbp4, mRbAp48; retinoblastoma binding protein 4;
K10752 histone-binding protein RBBP4
Length=425
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query 8 LVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDL 67
++ G + V DLR ++ L + HK I V+W P E + A++ D L WDL
Sbjct 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query 68 SV--EREEPAEVQTAAAAVPEQLMFVHGGQQ-QISEFHFHPQIPGFVAATASDGF 119
S E + P + + P +L+F+HGG +IS+F ++P P + + + D
Sbjct 348 SKIGEEQSPEDAEDG----PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 398
> dre:321726 rbb4, RBBP4, rbb4-2, wu:fb33a09, wu:fb40e10, zgc:55349,
zgc:77854; retinoblastoma binding protein 4; K10752 histone-binding
protein RBBP4
Length=424
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 7/115 (6%)
Query 8 LVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDL 67
++ G + V DLR ++ L + HK I V+W P E + A++ D L WDL
Sbjct 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
Query 68 SV--EREEPAEVQTAAAAVPEQLMFVHGGQQ-QISEFHFHPQIPGFVAATASDGF 119
S E + P + + P +L+F+HGG +IS+F ++P P + + + D
Sbjct 348 SKIGEEQSPEDAEDG----PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 398
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 0/41 (0%)
Query 29 PLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDLSV 69
P ++ H+K + W+P+ G +AS D ++ WD+S
Sbjct 169 PDLRLRGHQKEGYGLSWNPNLRGCLLSASDDHTICLWDIST 209
> cel:K07A1.12 lin-53; abnormal cell LINeage family member (lin-53);
K10752 histone-binding protein RBBP4
Length=417
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query 8 LVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDL 67
++ G + V DLR +M L + H+ I V+W P E + A++ D L WDL
Sbjct 280 ILATGSADKTVALWDLRNLRMKLHSFESHRDEIFQVQWSPHNETILASSGTDKRLHVWDL 339
Query 68 S-VEREEPAEVQTAAAAVPEQLMFVHGGQQ-QISEFHFHPQIPGFVAATASDGF 119
S + ++ AE A P +L+F+HGG +IS+F ++P P V + + D
Sbjct 340 SKIGEDQSAE---DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVVCSVSEDNI 390
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 0/50 (0%)
Query 29 PLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDLSVEREEPAEVQ 78
PL ++ H K + W+P++EG+ +AS D ++ WD++ + E+Q
Sbjct 164 PLIRLKGHTKEGYGLSWNPNKEGLILSASDDQTVCHWDINANQNVAGELQ 213
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 9/72 (12%)
Query 5 NPN---LVLAGLEEGLVVATDLRCPQMPLAQI------DWHKKPITCVEWHPSEEGVFAA 55
NPN L+L+ ++ V D+ Q ++ H+ + V WH +GVF +
Sbjct 181 NPNKEGLILSASDDQTVCHWDINANQNVAGELQAKDVFKGHESVVEDVAWHVLHDGVFGS 240
Query 56 ASLDDSLTFWDL 67
D L WD+
Sbjct 241 VGDDKKLLIWDV 252
> xla:380056 rbbp7, MGC53418; retinoblastoma binding protein 7;
K11659 histone-binding protein RBBP7
Length=425
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query 8 LVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDL 67
++ G + V DLR ++ L + HK I V W P E + A++ D L WDL
Sbjct 287 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 346
Query 68 S-VEREEPAEVQTAAAAVPEQLMFVHGGQQ-QISEFHFHPQIPGFVAATASDGF 119
S + E+ AE A P +L+F+HGG +IS+F ++P P + + + D
Sbjct 347 SKIGEEQSAE---DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 397
> mmu:245688 Rbbp7, AA409861, AI173248, AU019541, BB114024, mRbAp46;
retinoblastoma binding protein 7; K11659 histone-binding
protein RBBP7
Length=425
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query 8 LVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDL 67
++ G + V DLR ++ L + HK I V W P E + A++ D L WDL
Sbjct 287 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 346
Query 68 S-VEREEPAEVQTAAAAVPEQLMFVHGGQQ-QISEFHFHPQIPGFVAATASDGF 119
S + E+ AE A P +L+F+HGG +IS+F ++P P + + + D
Sbjct 347 SKIGEEQSAE---DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 397
> hsa:5931 RBBP7, MGC138867, MGC138868, RbAp46; retinoblastoma
binding protein 7; K11659 histone-binding protein RBBP7
Length=469
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 5/114 (4%)
Query 8 LVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDL 67
++ G + V DLR ++ L + HK I V W P E + A++ D L WDL
Sbjct 331 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDL 390
Query 68 S-VEREEPAEVQTAAAAVPEQLMFVHGGQQ-QISEFHFHPQIPGFVAATASDGF 119
S + E+ AE A P +L+F+HGG +IS+F ++P P + + + D
Sbjct 391 SKIGEEQSAE---DAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNI 441
> ath:AT4G35050 MSI3; MSI3 (MULTICOPY SUPPRESSOR OF IRA1 3); protein
binding; K10752 histone-binding protein RBBP4
Length=424
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 1/105 (0%)
Query 15 EGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDLSVEREEP 74
+ V DLR PL + H+ + VEW P+ E V A++ D L WD++ +E
Sbjct 283 DSTVALFDLRKLTAPLHVLSKHEGEVFQVEWDPNHETVLASSGEDRRLMVWDINRVGDEQ 342
Query 75 AEVQTAAAAVPEQLMFVHGGQQ-QISEFHFHPQIPGFVAATASDG 118
E++ A P +L+F HGG + +IS+F ++ P +++ A D
Sbjct 343 LEIELDAEDGPPELLFSHGGHKAKISDFAWNKDEPWVISSVAEDN 387
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 0/43 (0%)
Query 29 PLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDLSVER 71
P+ + H+ I V WH E +F +A D L WDL +
Sbjct 210 PMHVYEGHQSIIEDVAWHMKNENIFGSAGDDCQLVIWDLRTNQ 252
> ath:AT5G58230 MSI1; MSI1 (MULTICOPY SUPRESSOR OF IRA1); protein
binding; K10752 histone-binding protein RBBP4
Length=424
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query 5 NPNLVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTF 64
N +V G + V DLR L D HK+ + V W+P E + A+ L L
Sbjct 285 NEWVVATGSTDKTVKLFDLRKLSTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMV 344
Query 65 WDLSVEREEPAEVQTAAAAVPEQLMFVHGGQ-QQISEFHFHPQIPGFVAATASDGF 119
WDLS EE V+ A PE L+F+HGG +IS+F ++P +++ A D
Sbjct 345 WDLSRIDEEQT-VEDAEDGPPE-LLFIHGGHTSKISDFSWNPCEDWVISSVAEDNI 398
> bbo:BBOV_IV011040 23.m06093; retinoblastoma A associated protein;
K10752 histone-binding protein RBBP4
Length=454
Score = 55.1 bits (131), Expect = 6e-08, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 22/116 (18%)
Query 7 NLVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWD 66
++V G +G V D+R P P+ +D HK+ + VE+ P+ G+ A+AS D+ + W+
Sbjct 341 DVVATGEADGTVCIWDMRYPNEPMLLLDHHKEAVNQVEFCPASAGLLASASQDNKVCIWE 400
Query 67 LSVEREEPAEVQTAAAAVPEQLMFVHGGQQ-QISEFHFHPQIPGFVAATASDGFSI 121
LS E E+L FVH G + +S+ + AA+ +GF++
Sbjct 401 LSAE---------------ERLRFVHAGHRAAVSDLSW------LKAASMKNGFTL 435
> sce:YEL056W HAT2; Hat2p (EC:2.3.1.48); K10752 histone-binding
protein RBBP4
Length=401
Score = 54.3 bits (129), Expect = 8e-08, Method: Composition-based stats.
Identities = 34/117 (29%), Positives = 55/117 (47%), Gaps = 1/117 (0%)
Query 1 FSFQNPNLVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDD 60
FS + NL+ A + V DLR + PL + H+ + +E+ +GV ++ D+
Sbjct 259 FSHHSSNLLAAAGMDSYVYLYDLRNMKEPLHHMSGHEDAVNNLEFSTHVDGVVVSSGSDN 318
Query 61 SLTFWDLSVEREEPAEVQTAAAAVPEQLMFVHGGQQQISEFHFHPQIPGFVAATASD 117
L WDL E A VPE +M G + +++F +PQIP VA+ +
Sbjct 319 RLMMWDLKQIGAEQTP-DDAEDGVPELIMVHAGHRSSVNDFDLNPQIPWLVASAEEE 374
> ath:AT2G19520 FVE; FVE; metal ion binding; K10752 histone-binding
protein RBBP4
Length=507
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 10/117 (8%)
Query 7 NLVLAGLEEGLVVATDLRCPQM-----PLAQIDWHKKPITCVEWHPSEEGVFAAASLDDS 61
NL+L G + V D R P+ + + HK + CV+W P + VF +++ D
Sbjct 351 NLILTGSADNTVRLFDRRKLTANGVGSPIYKFEGHKAAVLCVQWSPDKSSVFGSSAEDGL 410
Query 62 LTFWDLSVEREEPAEVQTAAAAVPEQLMFVHGGQQ-QISEFHFHPQIPGFVAATASD 117
L WD + ++ AA P L F H G + ++ +FH++ P + + + D
Sbjct 411 LNIWDY----DRVSKKSDRAAKSPAGLFFQHAGHRDKVVDFHWNASDPWTIVSVSDD 463
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/54 (20%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query 14 EEGLVVATDLRCPQMPLAQIDW-HKKPITCVEWHPSEEGVFAAASLDDSLTFWD 66
++ ++ D R P+ +++ H + CV+W+P ++ + S D+++ +D
Sbjct 313 DDSCLILWDARTGTNPVTKVEKAHDADLHCVDWNPHDDNLILTGSADNTVRLFD 366
> pfa:PF13_0149 chromatin assembly factor 1 subunit, putative
Length=582
Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query 1 FSFQNPN--LVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASL 58
FSF N + + G +GL+ D+R + L ++ +H + I +++ G+FA+ S
Sbjct 440 FSFDNFSEYIFSCGYSDGLISVWDMRYNKESLLKLKYHTQGINRIKFGMISSGIFASCSD 499
Query 59 DDSLTFWDLS---------VEREEPAEVQTAAAAVPEQLMFVHGGQ 95
D + WD+S +++ E ++ VP+QL+FVHGG
Sbjct 500 DGTACIWDISRNNNTQILPLQKTED-DIYNNPNPVPKQLLFVHGGH 544
> tgo:TGME49_064820 WD-40 repeat protein, putative
Length=858
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query 8 LVLAGLEEGLVVATDLRCPQMPLAQI-DWHKKPITCVEWHPSEEGVFAAASLDDSLTFWD 66
+ AG ++G+ + DLR + P ++ H + +TC++W P E+ A+ S D + +D
Sbjct 707 VATAGADKGVSI-WDLRALRRPAHRLLHAHGEAVTCLKWAPGEKTTLASGSTDRLIRIFD 765
Query 67 LSVEREEPAEVQTAAAAVPEQLMFVHGGQ-QQISEFHFHPQ 106
LS+ E + A P +L FVHGG +++F ++PQ
Sbjct 766 LSLVGAE--QESDEAEDGPPELRFVHGGHLGAVNDFDWNPQ 804
> dre:406336 wdr24, wu:fd05f12, zgc:55946; WD repeat domain 24
Length=779
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query 1 FSFQNPNLVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDD 60
FS ++ A E G V D+R P H P+ C +WHP + G A D
Sbjct 165 FSMKDYFTFAASFENGNVQLWDIRRPDRYERMFTAHTGPVFCCDWHPEDRGWLATGGRDK 224
Query 61 SLTFWDLSVER-EEPAEVQTAAA 82
+ WD+S R +E VQT A+
Sbjct 225 MVKVWDMSTNRVKEIYCVQTFAS 247
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 50/113 (44%), Gaps = 22/113 (19%)
Query 10 LAGLEE-GLVVATDLRCPQMPLAQIDWHKKPITC--VEWHPSEEGVFAAASLDDSLTFWD 66
+ GLEE G V +LR + P +C V WH EE + A A+ + ++ W+
Sbjct 45 IYGLEEDGFVERLNLRVGRKPSLNF-------SCADVMWHQMEENLLATAATNGAVVTWN 97
Query 67 LSVEREEPAEVQTAAAAVPEQLMFVHGGQQQISEFHFHPQIPGFVAATASDGF 119
LS P + EQL H ++ +++ FHP + + + DGF
Sbjct 98 LS----RPCRNKQ------EQLFTEH--KRTVNKVCFHPTEVNMLLSGSQDGF 138
> pfa:PFA_0520c chromatin assembly factor 1 protein WD40 domain,
putative; K10752 histone-binding protein RBBP4
Length=446
Score = 47.0 bits (110), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/113 (26%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query 8 LVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDL 67
L +G + G + DL+ P I+ HK+ I + + P++ + A+AS + + +DL
Sbjct 309 LFASGSDNGKIKVWDLKKFHEPQHIINAHKEAIIRLNFSPNDASILASASNNRFINVYDL 368
Query 68 SVEREEPAEVQTAAAAVPEQLMFVHGGQQQ-ISEFHF--HPQIPGFVAATASD 117
+ EE + + P +L+F HGG Q +++F++ H ++ F+ +T+ D
Sbjct 369 NKIGEELDAIDLSDG--PSELIFSHGGHTQPVTDFNWNHHKKLKMFIGSTSED 419
> ath:AT4G29730 NFC5; NFC5 (Nucleosome/chromatin assembly factor
group C 5); K10752 histone-binding protein RBBP4
Length=487
Score = 46.2 bits (108), Expect = 2e-05, Method: Composition-based stats.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 10/121 (8%)
Query 7 NLVLAGLEEGLVVATDLRCPQM-----PLAQIDWHKKPITCVEWHPSEEGVFAAASLDDS 61
NL+L G + V D R P+ + + H+ + CV+W P + VF +++ D
Sbjct 331 NLILTGSADNTVRVFDRRNLTSNGVGSPVYKFEGHRAAVLCVQWSPDKSSVFGSSAEDGL 390
Query 62 LTFWDLSVEREEPAEVQTAAAAVPEQLMFVHGGQQ-QISEFHFHPQIPGFVAATASDGFS 120
L WD + + A P+ L F H G + ++ +FH+ P + + + + S
Sbjct 391 LNIWDC----DRVGKKSERATKTPDGLFFQHAGHRDKVVDFHWSLLNPWTIVSVSDNCES 446
Query 121 I 121
I
Sbjct 447 I 447
> hsa:84219 WDR24, C16orf21, DKFZp434F054, JFP7; WD repeat domain
24
Length=790
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query 1 FSFQNPNLVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDD 60
FS ++ + E G V D+R P H P+ C +WHP + G A D
Sbjct 171 FSIRDYFTFASTFENGNVQLWDIRRPDRCERMFTAHNGPVFCCDWHPEDRGWLATGGRDK 230
Query 61 SLTFWDLSVER-EEPAEVQTAAA 82
+ WD++ R +E VQT A+
Sbjct 231 MVKVWDMTTHRAKEMHCVQTIAS 253
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
Query 22 DLRCPQMPLAQIDWHKKPITCVEW-HPSEEGVFAAASLDDSLT---FWDLS--VEREEPA 75
D+R P +P A + H+ T + W HP + + S D SL F D S VER P
Sbjct 282 DVRRPFVPAAMFEEHRDVTTGIAWRHPHDPSFLLSGSKDSSLCQHLFRDASQPVERANPE 341
Query 76 EVQTA-----AAAVPEQLMFVHGGQQQISEFHFHP 105
+ A A E L+ G++ + HP
Sbjct 342 GLCYGLFGDLAFAAKESLVAAESGRKPYTGDRRHP 376
> mmu:268933 Wdr24, BC037651, MGC47001; WD repeat domain 24
Length=790
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query 1 FSFQNPNLVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDD 60
FS ++ + E G V D+R P H P+ C +WHP + G A D
Sbjct 171 FSIRDYFTFASTFENGNVQLWDIRRPDRCERMFTAHNGPVFCCDWHPEDRGWLATGGRDK 230
Query 61 SLTFWDLSVER-EEPAEVQTAAA 82
+ WD++ R +E VQT A+
Sbjct 231 MVKVWDMTTHRAKEIHCVQTIAS 253
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 11/95 (11%)
Query 22 DLRCPQMPLAQIDWHKKPITCVEW-HPSEEGVFAAASLDDSLT---FWDLS--VEREEPA 75
D+R P +P A + H+ T + W HP + + S D +L F D S VER P
Sbjct 282 DVRRPFVPAAMFEEHRDVTTGIAWRHPHDPSFLLSGSKDSTLCQHLFRDASQPVERANPE 341
Query 76 EVQTA-----AAAVPEQLMFVHGGQQQISEFHFHP 105
+ A AV E L+ G++ + HP
Sbjct 342 GLCYGLFGDLAFAVKESLVAAESGRKPYAGDRRHP 376
> xla:380357 wdr24, MGC47001, MGC53421; WD repeat domain 24
Length=780
Score = 45.1 bits (105), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query 1 FSFQNPNLVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDD 60
FS ++ A E G V D+R P H P+ C +WHP + G A D
Sbjct 166 FSIRDYFTFAATFENGNVQLWDIRRPDRCERMFTAHNGPVFCCDWHPEDRGWLATGGRDK 225
Query 61 SLTFWDLSVER-EEPAEVQTAAA 82
+ WD++ R +E VQT A+
Sbjct 226 MVKVWDMNTNRAKEIYCVQTIAS 248
> cel:K07A1.11 rba-1; RbAp48 related family member (rba-1); K10752
histone-binding protein RBBP4
Length=412
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/103 (24%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query 22 DLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDLSVEREEPAEVQTAA 81
D+R + + + H I V + P E V A++ DD + WD+S ++ + ++
Sbjct 293 DMRNMRKKMYTLKHHNDEIFQVSFSPHYETVLASSGSDDRVIVWDISKIQDPSSSSAASS 352
Query 82 AAVPEQLMFVHGGQQ-QISEFHFHPQIPGFVAATASDGFSIFK 123
+VP +++F+H G ++++F ++P P + +SD F+ +
Sbjct 353 DSVPPEVIFIHAGHTGKVADFSWNPNRPWTIC--SSDEFNALQ 393
Score = 31.2 bits (69), Expect = 0.89, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query 22 DLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDLSVEREE 73
DLR + L + H + C+ ++P E + A S+D ++ WD+ R++
Sbjct 250 DLRQSKPQLTAVG-HTAEVNCITFNPFSEYILATGSVDKTVALWDMRNMRKK 300
> hsa:92715 WDR85, C9orf112, FLJ90634, RP11-48C7.3; WD repeat
domain 85
Length=452
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 14/123 (11%)
Query 1 FSFQNPNLVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDD 60
F++ +P +V +G ++GL+ D R P L H + ++ P E + A S D+
Sbjct 203 FNYWHPEIVYSGGDDGLLRGWDTRVPGKFLFTSKRHTMGVCSIQSSPHREHILATGSYDE 262
Query 61 SLTFWDLSVEREEPAEVQTAAAAVPEQLMFVHGGQQQISEFHFHPQIPGFVAATASDGFS 120
+ WD ++ A+ V GG +I FH + +AA GF
Sbjct 263 HILLWDTRNMKQPLADTP------------VQGGVWRIKWHPFHHHL--LLAACMHSGFK 308
Query 121 IFK 123
I
Sbjct 309 ILN 311
> mmu:319481 Wdr59, 5430401O09Rik, Cdw12; WD repeat domain 59
Length=974
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query 4 QNPNLVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLT 63
+N N LA +G V D R P + + H I ++WHP E +FA +S D+S+
Sbjct 159 KNANY-LATSHDGDVRIWDKRKPSTAVEYLAAHLSKIHGLDWHPDSEHIFATSSQDNSVK 217
Query 64 FWDLSVERE 72
FWD R+
Sbjct 218 FWDYRQPRK 226
> cpv:cgd5_740 WD repeat protein ; K10752 histone-binding protein
RBBP4
Length=470
Score = 42.7 bits (99), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 0/44 (0%)
Query 29 PLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDLSVERE 72
P+ I WH + ++WHPS VF + S D + WDL E
Sbjct 251 PIKSISWHNSDVNDLKWHPSSLSVFGSVSDDGTFALWDLRSSSE 294
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query 6 PNLVLAGLEEGLVVATDLRCPQMPLAQIDWH-KKPITCVEWHPSEEGVFAAASLDDSLTF 64
P +V G +G+V D R L + H KKPI C+EW + +D+ +
Sbjct 317 PTMVSTGNLDGIVQIWDFRNLNEELFSFNLHSKKPIICMEWSKWSPNILMTGGVDNKVVV 376
Query 65 WDLSVEREEPAE 76
WDL + P+E
Sbjct 377 WDL-YKNHNPSE 387
Score = 37.0 bits (84), Expect = 0.016, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Query 36 HKKPITCVEWHPSEEG---VFAAASLDDSLTFWDLS 68
H PIT + W+P+E G + A+AS D+++ FW S
Sbjct 430 HTAPITSISWNPNEHGDPLLVASASEDNTIQFWQFS 465
> cel:R06A4.9 hypothetical protein
Length=809
Score = 42.0 bits (97), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 17/114 (14%)
Query 4 QNPNLVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLT 63
+N N +L G + LV D+R + + HKK + + WHP EG+F + D S+
Sbjct 313 KNGNWLLTGGRDHLVKMYDIRMMK-EMRTYRAHKKEVISLAWHPIHEGLFVSGGGDGSIV 371
Query 64 FWDLSVEREEPAEVQTAAAAVPEQLMFVHGGQQQISEFHFHPQIPGFVAATASD 117
+W + E+E + H Q I +HP G + AT S+
Sbjct 372 YWMVDGEKEIG--------------LLEHAHDQAIWSMKWHPL--GHILATGSN 409
> hsa:79726 WDR59, FLJ12270, MGC11230; WD repeat domain 59
Length=974
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query 4 QNPNLVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLT 63
+N N LA +G V D R P + + H I ++WHP E + A +S D+S+
Sbjct 159 KNAN-CLATSHDGDVRIWDKRKPSTAVEYLAAHLSKIHGLDWHPDSEHILATSSQDNSVK 217
Query 64 FWDLSVERE 72
FWD R+
Sbjct 218 FWDYRQPRK 226
> ath:AT3G63460 WD-40 repeat family protein; K14005 protein transport
protein SEC31
Length=1102
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 45/97 (46%), Gaps = 15/97 (15%)
Query 22 DLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDLSVEREEPAEVQTAA 81
D+R P+ + H++ + +EW PS+ + D+ WD + AE+
Sbjct 248 DMRNIMSPVREFTGHQRGVIAMEWCPSDSSYLLTCAKDNRTICWDTNT-----AEI---V 299
Query 82 AAVPEQLMFVHGGQQQISEFHFHPQIPGFVAATASDG 118
A +P G + H++P+IPG ++A++ DG
Sbjct 300 AELP-------AGNNWNFDVHWYPKIPGVISASSFDG 329
> xla:779293 nup43, MGC154553; nucleoporin 43kDa; K14305 nuclear
pore complex protein Nup43
Length=375
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query 4 QNPN---LVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDD 60
++PN +V G ++G++ D+R +MP++ ++ H+ + V +HPS S D
Sbjct 222 RHPNQQHVVATGGQDGMLCIWDVRHGKMPMSLLNAHEAEMWEVHFHPSNPDHLFTCSEDG 281
Query 61 SLTFWDLSVEREEPA 75
SL WD S + E+P
Sbjct 282 SLWHWDASADSEKPT 296
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query 37 KKPITCVEWHPSEEGVFAAASLDDSLTFWDLSVEREEPAEVQTAAAAVPEQLMFVHGGQQ 96
+ P+ CV+ HP+++ V A D L WD+ +P L+ H +
Sbjct 214 RVPLHCVDRHPNQQHVVATGGQDGMLCIWDVR------------HGKMPMSLLNAH--EA 259
Query 97 QISEFHFHPQIPGFVAATASDG 118
++ E HFHP P + + DG
Sbjct 260 EMWEVHFHPSNPDHLFTCSEDG 281
> mmu:71991 Ercc8, 2410022P04Rik, 2810431L23Rik, 4631412O06Rik,
B130065P18Rik, Ckn1, Csa; excision repaiross-complementing
rodent repair deficiency, complementation group 8; K10570 DNA
excision repair protein ERCC-8
Length=397
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Query 9 VLAGLEEGLVVATDL----RCPQMPLAQI--------DWHKKPITCVEWHPSEEGVFAAA 56
+L+G +G+VV DL R P + D HK + V+W+P + G+F ++
Sbjct 59 MLSGGSDGVVVLYDLENASRQPHYTCKAVCSVGRSHPDVHKYSVETVQWYPHDTGMFTSS 118
Query 57 SLDDSLTFWD 66
S D +L WD
Sbjct 119 SFDKTLKVWD 128
Score = 32.0 bits (71), Expect = 0.50, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query 18 VVATDLRCPQMPLAQI---------DWHKKPITCVEWHPSEEGVFAAASLDDSLTFWDL 67
+VA R P++ L + H++ I V W P + + A AS D + WD+
Sbjct 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRHDYILATASADSRVKLWDV 216
> sce:YPL247C Putative protein of unknown function; green fluorescent
protein (GFP)-fusion protein localizes to the cytoplasm
and nucleus; similar to the petunia WD repeat protein an11;
overexpression causes a cell cycle delay or arrest; K11805
WD repeat-containing protein 68
Length=523
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Query 5 NPN-LVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDDSLT 63
+PN L + ++ D+R P+ P+ + H + ++WHP++ V + D +
Sbjct 361 DPNVLATFAADSNKIIILDMRNPESPILNLQGHGSSVNGIKWHPTKRNVLLSCGDDCQVL 420
Query 64 FWDLSVEREEPAEVQTAAAAVPEQLMFVHG 93
+WDL+ E+ A + P +HG
Sbjct 421 YWDLN---SSFMEINAAGSKSPS----IHG 443
> tgo:TGME49_078280 WD-40 repeat-containing protein ; K10752 histone-binding
protein RBBP4
Length=697
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 0/67 (0%)
Query 1 FSFQNPNLVLAGLEEGLVVATDLRCPQMPLAQIDWHKKPITCVEWHPSEEGVFAAASLDD 60
F+ + ++V G GLV DLR P + H +T + + P G+ A+AS D
Sbjct 467 FNRYSEHVVAVGSARGLVSLFDLRLLSRPFLSLSHHSDEVTSLHFSPLSSGLLASASADG 526
Query 61 SLTFWDL 67
+ W+L
Sbjct 527 DVVLWEL 533
> dre:260439 copa, cb281, fb13c12, wu:fb13c12; coatomer protein
complex, subunit alpha; K05236 coatomer protein complex, subunit
alpha (xenin)
Length=1224
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 46/101 (45%), Gaps = 14/101 (13%)
Query 36 HKKPITCVEWHPSEEGVFAAASLDDSLTFWDLSVEREE---PAEVQTAAAAVPEQLMF-- 90
H + C ++HPSE+ V +ASLD ++ WD+S R++ P V T + +F
Sbjct 134 HNHYVMCAQFHPSEDLV-VSASLDQTVRVWDISGLRKKNLSPGAVDTEVRGISGVDLFGA 192
Query 91 --------VHGGQQQISEFHFHPQIPGFVAATASDGFSIFK 123
+ G + ++ FHP +P V+ I++
Sbjct 193 SDAVVKHVLEGHDRGVNWAAFHPSMPLIVSGADDRQVKIWR 233
> dre:326944 prpf4, mg:ab03a02, zgc:65943; PRP4 pre-mRNA processing
factor 4 homolog (yeast); K12662 U4/U6 small nuclear ribonucleoprotein
PRP4
Length=507
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 21/94 (22%)
Query 29 PLAQIDWHKKPITCVEWHPSEEGVFAAAS-LDDSLTFWDLSVEREEPAEVQTAAAAVPEQ 87
P+A I+ H + V WHPS G F + D S WDL V+ E+
Sbjct 300 PIADIEGHSMRVARVTWHPS--GRFLGTTCYDHSWRLWDLEVQ---------------EE 342
Query 88 LMFVHGGQQQISEFHFHPQIPGFVAATAS-DGFS 120
++ G + + + HFHP G +A T D F+
Sbjct 343 ILHQEGHSKGVHDLHFHPD--GSLAGTGGLDSFA 374
Lambda K H
0.320 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2003197800
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40