bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_5830_orf1 Length=85 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_113120 RNA polymerase Rpb3/Rpb11 dimerization domai... 67.8 8e-12 bbo:BBOV_IV001020 21.m03001; DNA-directed RNA polymerase, alph... 62.0 5e-10 pfa:PF14_0695 DNA-directed RNA polymerase, alpha subunit, puta... 58.9 3e-09 tpv:TP01_0126 DNA-directed RNA polymerase, subunit alpha 49.7 2e-06 pfa:PF13_0040 DNA-directed RNA polymerase alpha chain, putativ... 44.7 8e-05 tgo:TGME49_049560 DNA-directed RNA polymerase alpha chain, put... 39.3 0.003 bbo:BBOV_III011410 17.m07973; hypothetical protein; K03040 DNA... 39.3 0.003 ath:ArthCp055 rpoA; RNA polymerase alpha chain; K03040 DNA-dir... 34.3 0.10 dre:797304 smc6; structural maintenance of chromosomes 6 30.4 eco:b3295 rpoA, ECK3282, JW3257, pez, phs, sez; RNA polymerase... 30.0 2.1 cpv:cgd7_4060 signal recognition particle SPR72 ; K03108 signa... 29.6 2.6 tpv:TP03_0199 DNA-directed RNA polymerase subunit alpha (EC:2.... 29.3 3.0 ath:AT5G15480 zinc finger (C2H2 type) family protein 28.5 6.0 > tgo:TGME49_113120 RNA polymerase Rpb3/Rpb11 dimerization domain-containing protein (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Length=623 Score = 67.8 bits (164), Expect = 8e-12, Method: Composition-based stats. Identities = 32/80 (40%), Positives = 50/80 (62%), Gaps = 0/80 (0%) Query 6 VPGMREDVLELALNLKTLSLRSGAPFARCRVRVHARGPLKLLGGHISFPSFLKCLNKENY 65 +P +RED+LE+ALNLK ++ + P VRV A GP L+ G I +PSF++ N E++ Sbjct 228 LPNVREDLLEIALNLKGVAFETLRPRESACVRVKAVGPQLLVAGMIDWPSFVRVGNPEHF 287 Query 66 ICQLAAAAAVCFEFQVEWGR 85 I ++ + E ++EWGR Sbjct 288 IAKVEEGGVLDLEMKLEWGR 307 > bbo:BBOV_IV001020 21.m03001; DNA-directed RNA polymerase, alpha subunit; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Length=676 Score = 62.0 bits (149), Expect = 5e-10, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 0/85 (0%) Query 1 NGALSVPGMREDVLELALNLKTLSLRSGAPFARCRVRVHARGPLKLLGGHISFPSFLKCL 60 N ++ G+ +D++ +ALNL ++L + P RVR +GP ++ G I +PSF+K Sbjct 299 NEDTTIDGVTDDLMNIALNLNEVALETLEPGGEARVRTVIKGPAQVCAGSIEWPSFVKIA 358 Query 61 NKENYICQLAAAAAVCFEFQVEWGR 85 + YI + + E ++EWGR Sbjct 359 TPDAYITNVEEGGTLDIEIKIEWGR 383 > pfa:PF14_0695 DNA-directed RNA polymerase, alpha subunit, putative; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Length=861 Score = 58.9 bits (141), Expect = 3e-09, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 48/85 (56%), Gaps = 0/85 (0%) Query 1 NGALSVPGMREDVLELALNLKTLSLRSGAPFARCRVRVHARGPLKLLGGHISFPSFLKCL 60 N + ++ED+LE+ALN+ + + S +R+ +GPL L+ G I PS LK + Sbjct 521 NEDTKINNVQEDLLEIALNISDVCIYSKEINLESNIRLIFKGPLMLVAGMIPLPSHLKII 580 Query 61 NKENYICQLAAAAAVCFEFQVEWGR 85 NKE+YIC + + ++E+G+ Sbjct 581 NKEHYICTIKEDGFIDISIKIEYGK 605 > tpv:TP01_0126 DNA-directed RNA polymerase, subunit alpha Length=746 Score = 49.7 bits (117), Expect = 2e-06, Method: Composition-based stats. Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 0/51 (0%) Query 35 RVRVHARGPLKLLGGHISFPSFLKCLNKENYICQLAAAAAVCFEFQVEWGR 85 RVR +GP L G + +PSF+K N E YI +L A + E ++EWGR Sbjct 405 RVRTVIKGPAMLCAGALEWPSFVKLCNPECYITKLEEGAELDLEIKIEWGR 455 > pfa:PF13_0040 DNA-directed RNA polymerase alpha chain, putative (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Length=619 Score = 44.7 bits (104), Expect = 8e-05, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 48/84 (57%), Gaps = 10/84 (11%) Query 6 VPGMREDVLELALNLKTLSLRSGAP-------FARCRVRVHARGPLKLLGGHISFPSFLK 58 + G+RE+ +LA NL+ ++ ++ P + + R+ +GP+ ++ GH+ P ++ Sbjct 297 IVGVRENFFDLAQNLRQITFKN-VPEDVDMDNYMIGKFRI--KGPMIVVAGHMQLPKNVE 353 Query 59 CLNKENYICQLAAAAAVCFEFQVE 82 +N+ YIC +AA + + + ++E Sbjct 354 IVNRNQYICSVAAGSYLSMDVKIE 377 > tgo:TGME49_049560 DNA-directed RNA polymerase alpha chain, putative (EC:2.7.7.6) Length=836 Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 0/48 (0%) Query 35 RVRVHARGPLKLLGGHISFPSFLKCLNKENYICQLAAAAAVCFEFQVE 82 R ++ RGPL + GHI P ++ +NK Y+ + A V +F++E Sbjct 283 RAKLRVRGPLVAVAGHIQLPEGVEVVNKNQYLFTVNAGYYVNMDFKIE 330 > bbo:BBOV_III011410 17.m07973; hypothetical protein; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Length=610 Score = 39.3 bits (90), Expect = 0.003, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 21/104 (20%) Query 1 NGALSVPGMREDVLELALNLKTLSLRS---GAPFARCRV-RVHARGPLKLLGGHISFPSF 56 N S+ G+RED +L+ NL + R+ A F R + R+ +GP+ + GHI Sbjct 264 NEFYSIVGLREDFFDLSRNLTKVIFRNVPMTATFHRPLIGRLRLKGPIIAVAGHIELDQT 323 Query 57 -----------------LKCLNKENYICQLAAAAAVCFEFQVEW 83 ++ +NK YIC L+ A + E ++E+ Sbjct 324 FQKEGVGSSSGSKDDRRIEIVNKNQYICALSRDAYLDMEVKIEY 367 > ath:ArthCp055 rpoA; RNA polymerase alpha chain; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Length=329 Score = 34.3 bits (77), Expect = 0.10, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 1/81 (1%) Query 5 SVPGMREDVLELALNLKTLSLRSGAPFARCRVRVHARGPLKLLGGHISFPSFLKCLNKEN 64 ++ G++E V E+ +NL + LRS R + +GP + I P ++ ++ Sbjct 76 NIAGIQESVHEILMNLNEIVLRSNLYGTR-NALICVQGPGYITARDIILPPAVEIIDNTQ 134 Query 65 YICQLAAAAAVCFEFQVEWGR 85 +I L +C E ++E R Sbjct 135 HIATLTEPIDLCIELKIERNR 155 > dre:797304 smc6; structural maintenance of chromosomes 6 Length=948 Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats. Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 0/34 (0%) Query 31 FARCRVRVHARGPLKLLGGHISFPSFLKCLNKEN 64 FA+ R + GP+ H FPS L CLN EN Sbjct 432 FAQGRFKKKPVGPIGRGVHHPEFPSVLDCLNIEN 465 > eco:b3295 rpoA, ECK3282, JW3257, pez, phs, sez; RNA polymerase, alpha subunit (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Length=329 Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%) Query 8 GMREDVLELALNLKTLSLR-SGAPFARCRVRVHARGPLKLLGGHISFPSFLKCLNKENYI 66 G++ED+LE+ LNLK L++R G + GP+ I+ ++ + ++ I Sbjct 73 GVQEDILEILLNLKGLAVRVQGKDEVILTLNKSGIGPVT--AADITHDGDVEIVKPQHVI 130 Query 67 CQLA-AAAAVCFEFQVEWGR 85 C L A++ +V+ GR Sbjct 131 CHLTDENASISMRIKVQRGR 150 > cpv:cgd7_4060 signal recognition particle SPR72 ; K03108 signal recognition particle subunit SRP72 Length=680 Score = 29.6 bits (65), Expect = 2.6, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 0/30 (0%) Query 53 FPSFLKCLNKENYICQLAAAAAVCFEFQVE 82 PS L L K I LA+ AA CF F +E Sbjct 477 LPSLLSVLGKHLLIANLASEAAECFRFVLE 506 > tpv:TP03_0199 DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Length=377 Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 4/57 (7%) Query 1 NGALSVPGMREDVLELALNLKTLSLRS---GAPFARCRV-RVHARGPLKLLGGHISF 53 N SV G+RED EL NL+ + ++ A F + + +GP+ + GH+ F Sbjct 3 NEFYSVVGLREDFFELVRNLRGVIFKNVPKTATFTNPVIATLRLKGPIIAVAGHLKF 59 > ath:AT5G15480 zinc finger (C2H2 type) family protein Length=402 Score = 28.5 bits (62), Expect = 6.0, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 0/34 (0%) Query 33 RCRVRVHARGPLKLLGGHISFPSFLKCLNKENYI 66 RCR+ + LGGH +F KC NK+N I Sbjct 359 RCRLCNKIFSSYQALGGHQTFHRMSKCKNKKNGI 392 Lambda K H 0.326 0.140 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2035463248 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40