bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_6080_orf4
Length=98
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_114860 zinc knuckle domain-containing protein (EC:2... 167 1e-41
pfa:PFF1135w transcription or splicing factor-like protein, pu... 152 2e-37
bbo:BBOV_IV011380 23.m06391; transcription or splicing factor-... 139 3e-33
tpv:TP01_1166 transcription factor; K13095 splicing factor 1 134 5e-32
cpv:cgd4_1210 Ms15p; KH + 2 Znknuckle (C2HC) ; K13095 splicing... 130 8e-31
ath:AT5G51300 splicing factor-related; K13095 splicing factor 1 86.7
sce:YLR116W MSL5; BBP; K13095 splicing factor 1 86.3
cel:Y116A8C.32 sfa-1; Splicing FActor family member (sfa-1); K... 81.3 8e-16
dre:572785 sf1, wu:fc09f06, znf162; splicing factor 1; K13095 ... 76.3 2e-14
xla:380473 sf1, MGC130789, MGC53716; splicing factor 1; K13095... 75.5 3e-14
mmu:22668 Sf1, BB094781, CW17R, MZFM, WBP4, Zfp162; splicing f... 74.7 7e-14
hsa:7536 SF1, BBP, D11S636, MBBP, ZFM1, ZNF162; splicing facto... 74.7 7e-14
ath:AT3G08620 KH domain-containing protein; K14945 protein qua... 66.2 3e-11
ath:AT2G38610 KH domain-containing protein 62.8 3e-10
dre:393815 MGC65890, qkib, qkr, zgc:77340; zgc:65890; K14945 p... 62.4 4e-10
xla:432049 qki-b, MGC83862, Xqua, qk, qk1, qki; quaking homolo... 62.0 4e-10
mmu:19317 Qk, 1110003F05Rik, 1500005P18, QkI, l(17)-1Wis, l17W... 62.0 5e-10
hsa:9444 QKI, DKFZp586I0923, Hqk, QK, QK1, QK3; quaking homolo... 62.0 5e-10
xla:734923 qki-a, MGC131021, qk, qk1; quaking homolog, KH doma... 61.6 5e-10
dre:30471 qk, cb344, fb44d06, qk1, qkia, wu:fb44d06, zqk-1, zq... 61.6 6e-10
cel:T21G5.5 asd-2; Alternative Splicing Defective family membe... 60.1 2e-09
cel:T23G11.3 gld-1; defective in Germ Line Development family ... 60.1 2e-09
ath:AT4G26480 KH domain-containing protein 59.3 3e-09
ath:AT1G09660 KH domain-containing quaking protein, putative 59.3 3e-09
ath:AT5G56140 KH domain-containing protein 57.0 1e-08
cel:Y69A2AR.32 hypothetical protein 55.5 4e-08
cel:K07H8.9 hypothetical protein 55.1 5e-08
cel:Y57G11C.36 hypothetical protein 53.9 1e-07
dre:768147 khdrbs2, zgc:153588; KH domain containing, RNA bind... 50.8 9e-07
dre:100329476 KH domain containing, RNA binding, signal transd... 50.8 9e-07
dre:406516 khdrbs1b, khdrbs1l, sb:cb97, wu:fb07d11, wu:fi43c05... 50.8 9e-07
hsa:10657 KHDRBS1, FLJ34027, Sam68, p62; KH domain containing,... 50.1 2e-06
mmu:20218 Khdrbs1, Sam68, p62; KH domain containing, RNA bindi... 50.1 2e-06
dre:30082 khdrbs1a, MGC113899, fj90g10, khdrbs1, p62, wu:fa18g... 50.1 2e-06
hsa:202559 KHDRBS2, FLJ38664, MGC26664, SLM-1, SLM1, bA535F17.... 49.3 3e-06
mmu:170771 Khdrbs2, 6330586C16Rik, Slim1, Slm1; KH domain cont... 49.3 3e-06
ath:AT3G32940 RNA binding 46.6 2e-05
cel:E02D9.1 hypothetical protein 44.3 9e-05
cel:B0280.17 hypothetical protein 44.3 1e-04
mmu:13992 Khdrbs3, Etle, SLM-2, Slm2, T-STAR; KH domain contai... 43.5 2e-04
hsa:10656 KHDRBS3, Etle, SALP, SLM-2, SLM2, T-STAR, TSTAR, eto... 43.5 2e-04
cpv:cgd2_2940 hypothetical protein 32.3 0.34
dre:100332760 hypothetical protein LOC100332760 30.4 1.6
cel:F54D1.1 hypothetical protein 30.0 2.0
pfa:PFE0500c conserved Plasmodium protein, unknown function 29.6 2.7
mmu:108797 Mex3b, 4931439A04Rik, M-04814, Rkhd3, mKIAA2009; me... 28.9 4.1
dre:402883 hypothetical protein LOC402883; K02130 F-type H+-tr... 28.9 4.2
mmu:237400 Mex3d, BC059858, MGC69704, Rkhd1; mex3 homolog D (C... 28.9 4.2
hsa:84206 MEX3B, DKFZp434J0617, MEX-3B, MGC117199, RKHD3, RNF1... 28.9 4.4
mmu:320267 Fubp3, A330051M14Rik, AV006371, FBP3, MGC118501; fa... 28.9 4.6
> tgo:TGME49_114860 zinc knuckle domain-containing protein (EC:2.7.7.8);
K13095 splicing factor 1
Length=723
Score = 167 bits (422), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 77/98 (78%), Positives = 87/98 (88%), Gaps = 0/98 (0%)
Query 1 DKNGGRVNTREARAKAAMLAEQQSLLEFMLGSLKGFVAPPDFRPAKKIRRIEFPHEKYPD 60
D+NGGR+NTRE R ++AM+AEQQ L EFM+ L GFV PPD++P+KKIRRIE P +KYPD
Sbjct 104 DRNGGRINTREVRVRSAMVAEQQRLTEFMVKHLPGFVPPPDWKPSKKIRRIEIPLDKYPD 163
Query 61 YNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEGK 98
YNFMGIIIGPRGCNHKRLEAESG TISVRGRGTQKEGK
Sbjct 164 YNFMGIIIGPRGCNHKRLEAESGTTISVRGRGTQKEGK 201
> pfa:PFF1135w transcription or splicing factor-like protein,
putative; K13095 splicing factor 1
Length=615
Score = 152 bits (385), Expect = 2e-37, Method: Composition-based stats.
Identities = 66/98 (67%), Positives = 81/98 (82%), Gaps = 0/98 (0%)
Query 1 DKNGGRVNTREARAKAAMLAEQQSLLEFMLGSLKGFVAPPDFRPAKKIRRIEFPHEKYPD 60
DKNG R+NTREAR K +M+ E L+E++L + GFVAPP ++P KKIR+IE P +KYP+
Sbjct 111 DKNGSRINTREARIKNSMIEEHHRLIEYLLKHVDGFVAPPTYKPIKKIRKIEIPIDKYPE 170
Query 61 YNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEGK 98
YNFMG+IIGPRGCNHKRLEAESG IS+RG+GT KEGK
Sbjct 171 YNFMGLIIGPRGCNHKRLEAESGAQISIRGKGTLKEGK 208
> bbo:BBOV_IV011380 23.m06391; transcription or splicing factor-like
protein; K13095 splicing factor 1
Length=488
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/98 (66%), Positives = 78/98 (79%), Gaps = 0/98 (0%)
Query 1 DKNGGRVNTREARAKAAMLAEQQSLLEFMLGSLKGFVAPPDFRPAKKIRRIEFPHEKYPD 60
D+NG RVNTR+ RAK AM E L+E++L L GFVA D++P KKIR+I P +KYP+
Sbjct 129 DRNGSRVNTRDVRAKNAMNEEYNRLVEYLLKQLPGFVASADYKPLKKIRKIIIPLDKYPE 188
Query 61 YNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEGK 98
YNFMG++IGPRGCNHKRLEAESG IS+RGRGT KEGK
Sbjct 189 YNFMGLVIGPRGCNHKRLEAESGAQISLRGRGTLKEGK 226
> tpv:TP01_1166 transcription factor; K13095 splicing factor 1
Length=484
Score = 134 bits (338), Expect = 5e-32, Method: Composition-based stats.
Identities = 63/98 (64%), Positives = 78/98 (79%), Gaps = 0/98 (0%)
Query 1 DKNGGRVNTREARAKAAMLAEQQSLLEFMLGSLKGFVAPPDFRPAKKIRRIEFPHEKYPD 60
DKNG RVNTR+ R K +M E L+EF+L +L GFVA D++P KK+R+I P +KYP+
Sbjct 119 DKNGSRVNTRDVRVKNSMNEEYNRLVEFLLKNLPGFVASADYKPLKKVRKIIIPLDKYPE 178
Query 61 YNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEGK 98
YNFMG++IGPRGCNHKRLEAESG IS+RGRGT K+GK
Sbjct 179 YNFMGLVIGPRGCNHKRLEAESGAQISLRGRGTVKDGK 216
> cpv:cgd4_1210 Ms15p; KH + 2 Znknuckle (C2HC) ; K13095 splicing
factor 1
Length=471
Score = 130 bits (328), Expect = 8e-31, Method: Composition-based stats.
Identities = 57/98 (58%), Positives = 76/98 (77%), Gaps = 0/98 (0%)
Query 1 DKNGGRVNTREARAKAAMLAEQQSLLEFMLGSLKGFVAPPDFRPAKKIRRIEFPHEKYPD 60
DKNG R+NTRE R + M E +L+E+M +++G+V P D++P KK +++ P +KYPD
Sbjct 118 DKNGSRINTREVRVRKNMEEELSNLIEYMSKNVEGYVVPKDYKPLKKTKKLIIPLDKYPD 177
Query 61 YNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEGK 98
YNFMG+IIGPRG NH+RLEAESG IS+RG+GT KEGK
Sbjct 178 YNFMGLIIGPRGYNHRRLEAESGTQISIRGKGTTKEGK 215
> ath:AT5G51300 splicing factor-related; K13095 splicing factor
1
Length=804
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/98 (41%), Positives = 64/98 (65%), Gaps = 0/98 (0%)
Query 1 DKNGGRVNTREARAKAAMLAEQQSLLEFMLGSLKGFVAPPDFRPAKKIRRIEFPHEKYPD 60
D G R+NTRE RA+ + E+Q ++ ++ F P D+RP K +++ P +++P
Sbjct 195 DNMGIRINTREYRARERLNRERQEIIAQIIKKNPAFKPPADYRPPKLHKKLFIPMKEFPG 254
Query 61 YNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEGK 98
YNF+G+IIGPRG KR+E E+G I +RG+G+ KEG+
Sbjct 255 YNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGR 292
> sce:YLR116W MSL5; BBP; K13095 splicing factor 1
Length=476
Score = 86.3 bits (212), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/99 (42%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Query 1 DKNGGRVNTREARAKAAMLAEQQSLLEFMLGSLKGFVAPPDF-RPAKKIRRIEFPHEKYP 59
D G R NTRE R + + E+ L+E L ++ FV P D+ RP K + P ++YP
Sbjct 101 DAQGKRTNTREQRYRKKLEDERIKLVEIALKTIPYFVPPDDYKRPTKFQDKYYIPVDQYP 160
Query 60 DYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEGK 98
D NF+G+++GPRG ++L+ +S C I++RGRG+ KEGK
Sbjct 161 DVNFVGLLLGPRGRTLRKLQEDSNCKIAIRGRGSVKEGK 199
> cel:Y116A8C.32 sfa-1; Splicing FActor family member (sfa-1);
K13095 splicing factor 1
Length=699
Score = 81.3 bits (199), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 4/101 (3%)
Query 1 DKNGGRVNTREARAKAAMLAEQQSLLEFMLGSLKGFVAPPDFRPAKKIR---RIEFPHEK 57
D NG R+NTRE R + + + ++ +L F P D+R A IR ++ P E+
Sbjct 255 DANGKRLNTREVRKRQELEQLRHEKIQALLKINPNFKPPADYR-APNIRLHDKVWIPQEQ 313
Query 58 YPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEGK 98
+PD NF+G++IGPRG K LEAE+G I +RG+G+ KEGK
Sbjct 314 FPDLNFVGLLIGPRGNTLKSLEAETGAKIIIRGKGSIKEGK 354
> dre:572785 sf1, wu:fc09f06, znf162; splicing factor 1; K13095
splicing factor 1
Length=565
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query 1 DKNGGRVNTREARAKAAMLAEQQSLLEFMLGSLKGFVAPPDFRP-AKKIR-RIEFPHEKY 58
+ G R+NTRE R + + E+ SL+ M+G F P D++P A ++ ++ P ++Y
Sbjct 88 NSEGKRLNTREYRTRKKLEEERHSLITEMVGLNPEFKPPTDYKPPATRVSDKVMIPQDEY 147
Query 59 PDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEGK 98
P+ NF+G++IGPRG K +E E I +RG+G+ KEGK
Sbjct 148 PEINFVGLLIGPRGNTLKNIEKECCAKIMIRGKGSVKEGK 187
> xla:380473 sf1, MGC130789, MGC53716; splicing factor 1; K13095
splicing factor 1
Length=571
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
Query 1 DKNGGRVNTREARAKAAMLAEQQSLLEFMLGSLKGFVAPPDFRP-AKKIR-RIEFPHEKY 58
+ G R+NTRE R + + E+ +L+ M+G F P D++P A ++ ++ P ++Y
Sbjct 78 NSEGKRLNTREFRTRKKLEEERHNLITEMVGLNPDFKPPADYKPPATRVSDKVMIPQDEY 137
Query 59 PDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEGK 98
P+ NF+G++IGPRG K +E E I +RG+G+ KEGK
Sbjct 138 PEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGK 177
> mmu:22668 Sf1, BB094781, CW17R, MZFM, WBP4, Zfp162; splicing
factor 1; K13095 splicing factor 1
Length=639
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query 1 DKNGGRVNTREARAKAAMLAEQQSLLEFMLGSLKGFVAPPDFRP-AKKIR-RIEFPHEKY 58
+ G R+NTRE R + + E+ +L+ M+ F P D++P A ++ ++ P ++Y
Sbjct 88 NSEGKRLNTREFRTRKKLEEERHTLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEY 147
Query 59 PDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEGK 98
P+ NF+G++IGPRG K +E E I +RG+G+ KEGK
Sbjct 148 PEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGK 187
> hsa:7536 SF1, BBP, D11S636, MBBP, ZFM1, ZNF162; splicing factor
1; K13095 splicing factor 1
Length=673
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 61/100 (61%), Gaps = 2/100 (2%)
Query 1 DKNGGRVNTREARAKAAMLAEQQSLLEFMLGSLKGFVAPPDFRP-AKKIR-RIEFPHEKY 58
+ G R+NTRE R + + E+ +L+ M+ F P D++P A ++ ++ P ++Y
Sbjct 213 NSEGKRLNTREFRTRKKLEEERHNLITEMVALNPDFKPPADYKPPATRVSDKVMIPQDEY 272
Query 59 PDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEGK 98
P+ NF+G++IGPRG K +E E I +RG+G+ KEGK
Sbjct 273 PEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGK 312
> ath:AT3G08620 KH domain-containing protein; K14945 protein quaking
Length=283
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 46/68 (67%), Gaps = 0/68 (0%)
Query 29 MLGSLKGFVAPPDFRPAKKIRRIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISV 88
M +G A P P K+I R++ P + YP++NF+G ++GPRG + KR+EA +GC + +
Sbjct 117 MAMEWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYI 176
Query 89 RGRGTQKE 96
RG+G+ K+
Sbjct 177 RGKGSIKD 184
> ath:AT2G38610 KH domain-containing protein
Length=286
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 44/68 (64%), Gaps = 0/68 (0%)
Query 29 MLGSLKGFVAPPDFRPAKKIRRIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISV 88
M +G P K+I R+E P + YP++NF+G ++GPRG + KR+EA +GC + +
Sbjct 118 MTMDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRVFI 177
Query 89 RGRGTQKE 96
RG+G+ K+
Sbjct 178 RGKGSIKD 185
> dre:393815 MGC65890, qkib, qkr, zgc:77340; zgc:65890; K14945
protein quaking
Length=319
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 38/49 (77%), Gaps = 0/49 (0%)
Query 50 RIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEGK 98
++ P ++YPD+NF+G I+GPRG K+LEAE+GC I VRG+G+ ++ K
Sbjct 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKK 133
> xla:432049 qki-b, MGC83862, Xqua, qk, qk1, qki; quaking homolog,
KH domain RNA binding; K14945 protein quaking
Length=342
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 38/49 (77%), Gaps = 0/49 (0%)
Query 50 RIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEGK 98
++ P ++YPD+NF+G I+GPRG K+LEAE+GC I VRG+G+ ++ K
Sbjct 86 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKK 134
> mmu:19317 Qk, 1110003F05Rik, 1500005P18, QkI, l(17)-1Wis, l17Wis1;
quaking; K14945 protein quaking
Length=319
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 38/49 (77%), Gaps = 0/49 (0%)
Query 50 RIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEGK 98
++ P ++YPD+NF+G I+GPRG K+LEAE+GC I VRG+G+ ++ K
Sbjct 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKK 133
> hsa:9444 QKI, DKFZp586I0923, Hqk, QK, QK1, QK3; quaking homolog,
KH domain RNA binding (mouse); K14945 protein quaking
Length=341
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 38/49 (77%), Gaps = 0/49 (0%)
Query 50 RIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEGK 98
++ P ++YPD+NF+G I+GPRG K+LEAE+GC I VRG+G+ ++ K
Sbjct 85 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKK 133
> xla:734923 qki-a, MGC131021, qk, qk1; quaking homolog, KH domain
RNA binding
Length=333
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 38/49 (77%), Gaps = 0/49 (0%)
Query 50 RIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEGK 98
++ P ++YPD+NF+G I+GPRG K+LEAE+GC I VRG+G+ ++ K
Sbjct 86 KLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKK 134
> dre:30471 qk, cb344, fb44d06, qk1, qkia, wu:fb44d06, zqk-1,
zqk1; quaking
Length=383
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 37/49 (75%), Gaps = 0/49 (0%)
Query 50 RIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEGK 98
++ P ++YPDYNF+G I+GPRG K+LEAE+GC I VRGR + ++ K
Sbjct 86 KLFVPVKEYPDYNFVGRILGPRGLTAKQLEAETGCKIMVRGRSSMRDKK 134
> cel:T21G5.5 asd-2; Alternative Splicing Defective family member
(asd-2); K14945 protein quaking
Length=403
Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats.
Identities = 25/49 (51%), Positives = 37/49 (75%), Gaps = 0/49 (0%)
Query 50 RIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEGK 98
++ P +++PDYNF+G I+GPRG K+LE E+GC I VRGRG+ ++ K
Sbjct 91 KVFVPAKEHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKK 139
> cel:T23G11.3 gld-1; defective in Germ Line Development family
member (gld-1)
Length=463
Score = 60.1 bits (144), Expect = 2e-09, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 35/47 (74%), Gaps = 0/47 (0%)
Query 50 RIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKE 96
+I P +YPDYNF+G I+GPRG K+LE ++GC I VRG+G+ ++
Sbjct 208 KIYVPKNEYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSMRD 254
> ath:AT4G26480 KH domain-containing protein
Length=555
Score = 59.3 bits (142), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 39/51 (76%), Gaps = 0/51 (0%)
Query 46 KKIRRIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKE 96
K+ R++ P +KYP+YNF+G ++GPRG + KR+EA + C + +RGRG+ K+
Sbjct 406 KRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKD 456
> ath:AT1G09660 KH domain-containing quaking protein, putative
Length=298
Score = 59.3 bits (142), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query 33 LKGFVAPPDFRPAKKIRRIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRG 92
+ G PP KK+ R++ P +KYP YNF+G I+GPRG + KR+E + C + +RGRG
Sbjct 136 MPGLPNPPI---VKKVIRLDVPVDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRG 192
Query 93 TQKE 96
+ K+
Sbjct 193 SVKD 196
> ath:AT5G56140 KH domain-containing protein
Length=315
Score = 57.0 bits (136), Expect = 1e-08, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 39/52 (75%), Gaps = 0/52 (0%)
Query 45 AKKIRRIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKE 96
AK+ R++ P + YP++NF+G ++GPRG + KR+EA + C + +RGRG+ K+
Sbjct 164 AKRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSIKD 215
> cel:Y69A2AR.32 hypothetical protein
Length=384
Score = 55.5 bits (132), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/40 (62%), Positives = 30/40 (75%), Gaps = 0/40 (0%)
Query 54 PHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGT 93
P EKYP YNF+G I+GPRG K+LE E+GC I VRGR +
Sbjct 78 PVEKYPKYNFVGRILGPRGMTVKQLEKETGCRIFVRGRAS 117
> cel:K07H8.9 hypothetical protein
Length=254
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 0/45 (0%)
Query 51 IEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQK 95
I P E YP YNF+G IIGPRG K+LE ++GC I +RG + K
Sbjct 125 IRIPVETYPTYNFIGRIIGPRGTTAKQLEKDTGCRIMIRGNHSNK 169
> cel:Y57G11C.36 hypothetical protein
Length=380
Score = 53.9 bits (128), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/47 (51%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query 51 IEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKEG 97
I P EK+PDYNF+G ++GPRG K+LE +GC I++ GR T+++G
Sbjct 116 IMVPVEKFPDYNFVGRLLGPRGTTAKQLEVTTGCRITILGR-TKRDG 161
> dre:768147 khdrbs2, zgc:153588; KH domain containing, RNA binding,
signal transduction associated 2
Length=346
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 35/47 (74%), Gaps = 0/47 (0%)
Query 50 RIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKE 96
R+ P ++YP +NF+G ++GPRG + KRL+ E+G +S+ G+G+ ++
Sbjct 63 RVLIPVQQYPKFNFVGKLLGPRGNSMKRLQEETGAKMSILGKGSMRD 109
> dre:100329476 KH domain containing, RNA binding, signal transduction
associated 1b-like; K13198 KH domain-containing, RNA-binding,
signal transduction-associated protein 1
Length=352
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%), Gaps = 0/47 (0%)
Query 50 RIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKE 96
RI P ++YP +NF+G I+GP+G KRL+ E+G ISV G+G+ ++
Sbjct 62 RILIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRD 108
> dre:406516 khdrbs1b, khdrbs1l, sb:cb97, wu:fb07d11, wu:fi43c05,
zgc:85948; KH domain containing, RNA binding, signal transduction
associated 1b; K13198 KH domain-containing, RNA-binding,
signal transduction-associated protein 1
Length=352
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%), Gaps = 0/47 (0%)
Query 50 RIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKE 96
RI P ++YP +NF+G I+GP+G KRL+ E+G ISV G+G+ ++
Sbjct 62 RILIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRD 108
> hsa:10657 KHDRBS1, FLJ34027, Sam68, p62; KH domain containing,
RNA binding, signal transduction associated 1; K13198 KH
domain-containing, RNA-binding, signal transduction-associated
protein 1
Length=443
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 34/47 (72%), Gaps = 0/47 (0%)
Query 50 RIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKE 96
R+ P ++YP +NF+G I+GP+G KRL+ E+G ISV G+G+ ++
Sbjct 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRD 205
> mmu:20218 Khdrbs1, Sam68, p62; KH domain containing, RNA binding,
signal transduction associated 1; K13198 KH domain-containing,
RNA-binding, signal transduction-associated protein
1
Length=443
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 34/47 (72%), Gaps = 0/47 (0%)
Query 50 RIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKE 96
R+ P ++YP +NF+G I+GP+G KRL+ E+G ISV G+G+ ++
Sbjct 159 RVLIPVKQYPKFNFVGKILGPQGNTIKRLQEETGAKISVLGKGSMRD 205
> dre:30082 khdrbs1a, MGC113899, fj90g10, khdrbs1, p62, wu:fa18g12,
wu:fa56c01, wu:fc91b01, wu:fj90g10, zgc:113899; KH domain
containing, RNA binding, signal transduction associated
1a
Length=370
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query 41 DFRPAKKIR---RIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKE 96
D +K +R R+ P ++YP +NF+G I+GP+G KRL+ ++G ISV G+G+ ++
Sbjct 60 DLFASKSVRVKERVLIPVKQYPRFNFVGKILGPQGSTIKRLQEDTGAKISVLGKGSMRD 118
> hsa:202559 KHDRBS2, FLJ38664, MGC26664, SLM-1, SLM1, bA535F17.1;
KH domain containing, RNA binding, signal transduction
associated 2
Length=349
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 35/47 (74%), Gaps = 0/47 (0%)
Query 50 RIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKE 96
R+ P ++YP +NF+G ++GPRG + KRL+ E+G +S+ G+G+ ++
Sbjct 63 RVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRD 109
> mmu:170771 Khdrbs2, 6330586C16Rik, Slim1, Slm1; KH domain containing,
RNA binding, signal transduction associated 2
Length=349
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 35/47 (74%), Gaps = 0/47 (0%)
Query 50 RIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKE 96
R+ P ++YP +NF+G ++GPRG + KRL+ E+G +S+ G+G+ ++
Sbjct 63 RVLIPVKQYPKFNFVGKLLGPRGNSLKRLQEETGAKMSILGKGSMRD 109
> ath:AT3G32940 RNA binding
Length=607
Score = 46.6 bits (109), Expect = 2e-05, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 0/61 (0%)
Query 36 FVAPPDFRPAKKIRRIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQK 95
+ APPD++P K R+ +++ D++F+ +I G +G KRLE E+G + + G T
Sbjct 122 YKAPPDYKPLLKEARLPIDVKEHSDFSFLSLIFGSQGDTQKRLEKETGAKVQIFGTKTGG 181
Query 96 E 96
E
Sbjct 182 E 182
> cel:E02D9.1 hypothetical protein
Length=317
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 33/54 (61%), Gaps = 0/54 (0%)
Query 43 RPAKKIRRIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKE 96
+P K ++I P ++P++NF+G ++GP+G + L C I + GRG+ K+
Sbjct 125 KPVKVCKKILVPIYRHPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKD 178
> cel:B0280.17 hypothetical protein
Length=260
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 0/51 (0%)
Query 46 KKIRRIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKE 96
+KI ++ FP E + N +G +IGPRG ++LE + GC + +RG+G K+
Sbjct 138 EKIDKVFFPPETANNTNPVGRLIGPRGMTIRQLEKDLGCKLFIRGKGCTKD 188
> mmu:13992 Khdrbs3, Etle, SLM-2, Slm2, T-STAR; KH domain containing,
RNA binding, signal transduction associated 3; K14942
KH domain-containing, RNA-binding, signal transduction-associated
protein 3
Length=346
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 35/48 (72%), Gaps = 0/48 (0%)
Query 49 RRIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKE 96
+++ P +++P +NF+G ++GPRG + KRL+ E+ +S+ G+G+ ++
Sbjct 58 QKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRD 105
> hsa:10656 KHDRBS3, Etle, SALP, SLM-2, SLM2, T-STAR, TSTAR, etoile;
KH domain containing, RNA binding, signal transduction
associated 3; K14942 KH domain-containing, RNA-binding, signal
transduction-associated protein 3
Length=346
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 35/48 (72%), Gaps = 0/48 (0%)
Query 49 RRIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGRGTQKE 96
+++ P +++P +NF+G ++GPRG + KRL+ E+ +S+ G+G+ ++
Sbjct 58 QKVLIPVKQFPKFNFVGKLLGPRGNSLKRLQEETLTKMSILGKGSMRD 105
> cpv:cgd2_2940 hypothetical protein
Length=1132
Score = 32.3 bits (72), Expect = 0.34, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 10/71 (14%)
Query 37 VAPPDFRPA-------KKIRRIEFPHEKY-PDY-NFMGIIIGPRGCNHKRLEAESGCTIS 87
VAPP +P+ + ++I K+ P N G IIG G N K +E ESG +
Sbjct 111 VAPPINQPSQGQTVSYRNTKKIPIDRSKFHPSISNLAGAIIGVSGSNQKWMEQESGAQVQ 170
Query 88 VRG-RGTQKEG 97
+ G G EG
Sbjct 171 ILGTTGNDPEG 181
> dre:100332760 hypothetical protein LOC100332760
Length=502
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query 12 ARAKAAMLAEQQSLLEFMLGSLKGFVAPPDFRPAKKIRRIEFPHEKYPDYNFMGIIIGPR 71
AR + AE S+L G +PP P + ++ P Y +G+++GP+
Sbjct 175 ARREIISAAEHFSMLRASRNKFSG--SPPAPLPGQTTIQVRVP------YRVVGLVVGPK 226
Query 72 GCNHKRLEAESGCTISV 88
G KR++ ++ CT V
Sbjct 227 GSTIKRIQQQT-CTYIV 242
> cel:F54D1.1 hypothetical protein
Length=278
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 0/32 (0%)
Query 62 NFMGIIIGPRGCNHKRLEAESGCTISVRGRGT 93
N++G I+GP G + + +E + T+ +RG G+
Sbjct 153 NYIGRILGPSGMSARMIENQYDVTLLIRGAGS 184
> pfa:PFE0500c conserved Plasmodium protein, unknown function
Length=2535
Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 0/27 (0%)
Query 67 IIGPRGCNHKRLEAESGCTISVRGRGT 93
IIG +G N K++ ++ C + +RGRG+
Sbjct 2423 IIGLKGTNMKKICIDTDCKLRLRGRGS 2449
> mmu:108797 Mex3b, 4931439A04Rik, M-04814, Rkhd3, mKIAA2009;
mex3 homolog B (C. elegans)
Length=576
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query 32 SLKGFVAPPDFRPAKKIRRIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGR 91
+L G V P P + ++ P Y +G+++GP+G KR++ ++ I R
Sbjct 153 ALNGAVPGPPNLPGQTTIQVRVP------YRVVGLVVGPKGATIKRIQQQTHTYIVTPSR 206
> dre:402883 hypothetical protein LOC402883; K02130 F-type H+-transporting
ATPase subunit f [EC:3.6.3.14]
Length=89
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query 15 KAAMLAEQQSLLEFMLGSLKGFVAPPDFRPAKKIRRIEFPHEKY 58
KA LAE++ L++ LG L ++ DF P +R I +E+Y
Sbjct 4 KAVSLAEKK-LMDVKLGQLPAWLGTRDFTPNGVVRGIRGGYERY 46
> mmu:237400 Mex3d, BC059858, MGC69704, Rkhd1; mex3 homolog D
(C. elegans)
Length=718
Score = 28.9 bits (63), Expect = 4.2, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query 31 GSLKGFVAPPDFRPAKKIRRIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRG 90
G L G P P + ++ P Y +G+++GP+G KR++ + I G
Sbjct 313 GGLSGATPGPPNLPGQTTIQVRVP------YRVVGLVVGPKGATIKRIQQRTHTYIVTPG 366
Query 91 R 91
R
Sbjct 367 R 367
> hsa:84206 MEX3B, DKFZp434J0617, MEX-3B, MGC117199, RKHD3, RNF195;
mex-3 homolog B (C. elegans)
Length=569
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query 32 SLKGFVAPPDFRPAKKIRRIEFPHEKYPDYNFMGIIIGPRGCNHKRLEAESGCTISVRGR 91
+L G V P P + ++ P Y +G+++GP+G KR++ ++ I R
Sbjct 146 ALNGAVPGPPNLPGQTTIQVRVP------YRVVGLVVGPKGATIKRIQQQTHTYIVTPSR 199
> mmu:320267 Fubp3, A330051M14Rik, AV006371, FBP3, MGC118501;
far upstream element (FUSE) binding protein 3; K13210 far upstream
element-binding protein
Length=575
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query 57 KYPDYNFMGIIIGPRGCNHKRLEAESGCTISV 88
K PD +G IIG G R++AESGC I +
Sbjct 83 KVPD-KMVGFIIGRGGEQISRIQAESGCKIQI 113
Lambda K H
0.319 0.138 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2050913756
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40