bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_6463_orf1 Length=142 Score E Sequences producing significant alignments: (Bits) Value bbo:BBOV_II001980 18.m06155; DNA-directed RNA polymerase, beta... 100 1e-21 tgo:TGME49_097530 DNA-directed RNA polymerase I subunit RPA2, ... 98.2 7e-21 cpv:cgd1_2770 RNA polymerase 1 beta subunit ; K03002 DNA-direc... 85.1 7e-17 tpv:TP04_0334 DNA-directed RNA polymerase subunit beta (EC:2.7... 84.0 2e-16 pfa:PF11_0358 DNA-directed RNA polymerase 1, subunit 2, putati... 80.5 2e-15 dre:325603 polr1b, MGC113960, MGC158198, MGC192771, MGC66298, ... 69.7 2e-12 sce:YPR010C RPA135, RPA2, RRN2, SRP3; A135 (EC:2.7.7.6); K0300... 68.6 6e-12 hsa:84172 POLR1B, FLJ10816, FLJ21921, MGC131780, RPA135, RPA2,... 65.1 6e-11 mmu:20017 Polr1b, 128kDa, D630020H17Rik, RPA116, RPA135, RPA2,... 65.1 7e-11 xla:379695 polr1b, MGC68946; polymerase (RNA) I polypeptide B,... 64.3 1e-10 cel:F14B4.3 hypothetical protein; K03002 DNA-directed RNA poly... 62.4 4e-10 ath:AT1G29940 NRPA2; NRPA2; DNA binding / DNA-directed RNA pol... 62.0 5e-10 bbo:BBOV_III000960 17.m07112; DNA-directed RNA polymerase, bet... 60.1 2e-09 tpv:TP03_0746 DNA-directed RNA polymerase III subunit; K03021 ... 58.9 5e-09 pfa:PFL0330c DNA-directed RNA polymerase III subunit, putative... 57.8 1e-08 cel:F09F7.3 hypothetical protein; K03021 DNA-directed RNA poly... 57.4 1e-08 cpv:cgd8_170 DNA-directed RNA polymerase beta subunit ; K03021... 56.6 3e-08 mmu:70428 Polr3b, 2700078H01Rik, A330032P03Rik, C85372, RPC2; ... 56.2 3e-08 hsa:55703 POLR3B, C128, DKFZp686B10117, FLJ10388, RPC2; polyme... 55.8 4e-08 dre:562329 polr3b, si:dkey-103i16.3, wu:fc20h06; polymerase (R... 55.8 4e-08 tgo:TGME49_072740 DNA-directed RNA polymerase III subunit, put... 55.5 6e-08 ath:AT5G45140 NRPC2; NRPC2; DNA binding / DNA-directed RNA pol... 55.1 8e-08 sce:YOR151C RPB2, RPB150, RPO22, SIT2, SOH2; B150 (EC:2.7.7.6)... 54.7 9e-08 tgo:TGME49_058210 DNA-directed RNA polymerase II subunit RPB2,... 54.7 1e-07 cpv:cgd7_3720 RNA polymerase beta subunit ; K03010 DNA-directe... 54.7 1e-07 xla:398890 polr2b, MGC68569; polymerase (RNA) II (DNA directed... 54.3 1e-07 dre:100149268 polr2b, zgc:109952; polymerase (RNA) II (DNA dir... 53.9 2e-07 mmu:231329 Polr2b, MGC47046, Pol2rb, Rpb140, Rpb2; polymerase ... 53.9 2e-07 hsa:5431 POLR2B, POL2RB, RPB2, hRPB140, hsRPB2; polymerase (RN... 53.9 2e-07 pfa:PFB0715w DNA-directed RNA polymerase II second largest sub... 53.5 2e-07 ath:AT4G21710 NRPB2; NRPB2; DNA binding / DNA-directed RNA pol... 52.8 3e-07 sce:YOR207C RET1, PDS2, RPC128, RPC2; C128 (EC:2.7.7.6); K0302... 52.8 4e-07 cel:C26E6.4 rpb-2; RNA Polymerase II (B) subunit family member... 51.6 8e-07 bbo:BBOV_II002050 18.m06162; DNA-directed RNA polymerase, beta... 50.1 3e-06 tpv:TP04_0340 DNA-directed RNA polymerase II subunit (EC:2.7.7... 49.7 3e-06 ath:AT3G18090 NRPD2B; NRPD2b; DNA binding / DNA-directed RNA p... 37.0 0.020 ath:AT3G23780 NRPD2A; NRPD2A; DNA binding / DNA-directed RNA p... 35.0 0.070 xla:734566 c12orf5, MGC115461, tigar; chromosome 12 open readi... 31.6 0.77 hsa:5320 PLA2G2A, MOM1, PLA2, PLA2B, PLA2L, PLA2S, PLAS1, sPLA... 31.6 0.79 dre:449792 cryba1c; zgc:101859 31.6 0.84 eco:b3987 rpoB, ECK3978, ftsR, groN, JW3950, mbrD?, nitB, rif,... 31.2 1.1 ath:AT1G54560 XIE; XIE; motor/ protein binding 30.8 1.5 cel:C36A4.8 brc-1; BRCa homolog (tumor suppressor gene Brca1) ... 30.0 2.5 sce:YMR136W GAT2; Gat2p 29.6 3.1 dre:550433 cryba1l, zgc:112134; crystallin, beta A1, like 28.9 5.5 ath:AT3G12950 catalytic 28.1 8.5 > bbo:BBOV_II001980 18.m06155; DNA-directed RNA polymerase, beta subunit; K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1283 Score = 100 bits (250), Expect = 1e-21, Method: Composition-based stats. Identities = 42/54 (77%), Positives = 50/54 (92%), Gaps = 0/54 (0%) Query 89 VTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGTPFH 142 V +VPV+YDY+E+SP+A LSVTAALTPFSNHNQSPRN+YQCQMLKQ+MG P+H Sbjct 742 VIDNVPVKYDYMEVSPSAILSVTAALTPFSNHNQSPRNMYQCQMLKQSMGVPYH 795 > tgo:TGME49_097530 DNA-directed RNA polymerase I subunit RPA2, putative (EC:2.7.7.6); K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1388 Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 42/57 (73%), Positives = 50/57 (87%), Gaps = 0/57 (0%) Query 86 DALVTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGTPFH 142 DAL + PV+Y+YVEL +AFLS+ A+LTP+S+HNQSPRNIYQCQMLKQTMGTPFH Sbjct 819 DALFSFSAPVKYEYVELKSSAFLSIAASLTPYSHHNQSPRNIYQCQMLKQTMGTPFH 875 > cpv:cgd1_2770 RNA polymerase 1 beta subunit ; K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1281 Score = 85.1 bits (209), Expect = 7e-17, Method: Composition-based stats. Identities = 36/52 (69%), Positives = 44/52 (84%), Gaps = 0/52 (0%) Query 89 VTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGTP 140 V S VPV Y ++EL P+ LSVTA+L P+++HNQSPRN+YQCQMLKQTMGTP Sbjct 737 VLSSVPVNYTHMELHPSTILSVTASLIPYAHHNQSPRNMYQCQMLKQTMGTP 788 > tpv:TP04_0334 DNA-directed RNA polymerase subunit beta (EC:2.7.7.6); K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1235 Score = 84.0 bits (206), Expect = 2e-16, Method: Composition-based stats. Identities = 42/93 (45%), Positives = 61/93 (65%), Gaps = 2/93 (2%) Query 50 NQGRLESDYQSLFNGQCDSSTPNCGRMDVRGFQEVRDALVTSHVPVRYDYVELSPTAFLS 109 N+ L + L + Q + S N ++ + + ++D + + PV Y+YVEL LS Sbjct 680 NEYELNKSHNKLLDLQANPSAMNKVQVP-KPLKSLKDNEL-DNCPVLYEYVELDMCCILS 737 Query 110 VTAALTPFSNHNQSPRNIYQCQMLKQTMGTPFH 142 ++A+LTPFSNHNQSPRN+YQCQMLKQ++G PFH Sbjct 738 LSASLTPFSNHNQSPRNMYQCQMLKQSVGIPFH 770 > pfa:PF11_0358 DNA-directed RNA polymerase 1, subunit 2, putative; K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1517 Score = 80.5 bits (197), Expect = 2e-15, Method: Composition-based stats. Identities = 33/47 (70%), Positives = 41/47 (87%), Gaps = 0/47 (0%) Query 92 HVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG 138 +P +++Y+EL T+FLS A+LTPFS+HNQSPRNIYQCQMLKQTMG Sbjct 925 QIPQKFEYMELKETSFLSFLASLTPFSDHNQSPRNIYQCQMLKQTMG 971 > dre:325603 polr1b, MGC113960, MGC158198, MGC192771, MGC66298, wu:fc91a05, zgc:66298; polymerase (RNA) I polypeptide B (EC:2.7.7.6); K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1132 Score = 69.7 bits (169), Expect = 2e-12, Method: Composition-based stats. Identities = 32/61 (52%), Positives = 38/61 (62%), Gaps = 8/61 (13%) Query 82 QEVRDALVTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGTPF 141 +E+ D + T EL P + LSV A PFS+HNQSPRN+YQCQM KQTMG P Sbjct 647 KEIEDGVTTHQ--------ELFPHSMLSVVAEFIPFSDHNQSPRNMYQCQMSKQTMGFPL 698 Query 142 H 142 H Sbjct 699 H 699 > sce:YPR010C RPA135, RPA2, RRN2, SRP3; A135 (EC:2.7.7.6); K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1203 Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 30/42 (71%), Positives = 35/42 (83%), Gaps = 0/42 (0%) Query 99 YVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGTP 140 +VE +PT LS+ A LTPFS+ NQSPRN+YQCQM KQTMGTP Sbjct 688 HVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTP 729 > hsa:84172 POLR1B, FLJ10816, FLJ21921, MGC131780, RPA135, RPA2, Rpo1-2; polymerase (RNA) I polypeptide B, 128kDa (EC:2.7.7.6); K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1079 Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 7/66 (10%) Query 76 MDVRGFQEVRDALVTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQ 135 M+V F++ A VT+H EL P + LSV A PFS+HNQSPRN+YQCQM KQ Sbjct 586 MNVAIFEDEVFAGVTTHQ-------ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQ 638 Query 136 TMGTPF 141 TMG P Sbjct 639 TMGFPL 644 > mmu:20017 Polr1b, 128kDa, D630020H17Rik, RPA116, RPA135, RPA2, Rpo1-2; polymerase (RNA) I polypeptide B (EC:2.7.7.6); K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1135 Score = 65.1 bits (157), Expect = 7e-11, Method: Composition-based stats. Identities = 28/41 (68%), Positives = 31/41 (75%), Gaps = 0/41 (0%) Query 101 ELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGTPF 141 EL P + LSV A PFS+HNQSPRN+YQCQM KQTMG P Sbjct 660 ELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPL 700 > xla:379695 polr1b, MGC68946; polymerase (RNA) I polypeptide B, 128kDa; K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1134 Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 30/49 (61%), Positives = 34/49 (69%), Gaps = 0/49 (0%) Query 93 VPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGTPF 141 VP + EL P + LSV A PFS+HNQSPRN+YQCQM KQTMG P Sbjct 651 VPGETTHQELFPHSMLSVVANFIPFSDHNQSPRNMYQCQMGKQTMGFPL 699 > cel:F14B4.3 hypothetical protein; K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1127 Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 26/42 (61%), Positives = 29/42 (69%), Gaps = 0/42 (0%) Query 101 ELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGTPFH 142 EL P+ S L PF +HNQSPRN+YQCQM KQTMGT H Sbjct 639 ELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVH 680 > ath:AT1G29940 NRPA2; NRPA2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding; K03002 DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6] Length=1178 Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 26/38 (68%), Positives = 31/38 (81%), Gaps = 0/38 (0%) Query 101 ELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG 138 E+ PT +SV A LTP+S+HNQSPRN+YQCQM KQTM Sbjct 678 EIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMA 715 > bbo:BBOV_III000960 17.m07112; DNA-directed RNA polymerase, beta subunit; K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1171 Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 0/49 (0%) Query 91 SHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGT 139 S + + ++E+SP + L V A L PF NHNQSPRN YQC M KQ++G+ Sbjct 699 SDITPKTTHLEISPMSMLGVVAGLIPFPNHNQSPRNTYQCAMGKQSIGS 747 > tpv:TP03_0746 DNA-directed RNA polymerase III subunit; K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1244 Score = 58.9 bits (141), Expect = 5e-09, Method: Composition-based stats. Identities = 24/41 (58%), Positives = 31/41 (75%), Gaps = 0/41 (0%) Query 99 YVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGT 139 ++E+SP + L V A L PF NHNQSPRN YQC M KQ++G+ Sbjct 755 HLEISPMSILGVVAGLIPFPNHNQSPRNTYQCAMGKQSIGS 795 > pfa:PFL0330c DNA-directed RNA polymerase III subunit, putative (EC:2.7.7.6); K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1450 Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 0/63 (0%) Query 76 MDVRGFQEVRDALVTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQ 135 +DV + AL S + + ++E+ P L V A L P+ NHNQSPRN YQC M KQ Sbjct 879 IDVNEQNNLLIALNESDISLSTTHLEIDPLTILGVVAGLIPYPNHNQSPRNTYQCAMGKQ 938 Query 136 TMG 138 +G Sbjct 939 AIG 941 > cel:F09F7.3 hypothetical protein; K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1154 Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 27/60 (45%), Positives = 36/60 (60%), Gaps = 3/60 (5%) Query 83 EVRDALVTSH---VPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGT 139 E+ DAL+ + + ++E+ P L V A L P+ +HNQSPRN YQC M KQ MGT Sbjct 650 EMNDALIAVYGREIGPETTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGT 709 > cpv:cgd8_170 DNA-directed RNA polymerase beta subunit ; K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1287 Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 0/41 (0%) Query 99 YVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGT 139 ++E+ P + L V + L P+ NHNQSPRN YQC M KQ MG+ Sbjct 807 HLEIDPLSILGVVSGLIPYPNHNQSPRNTYQCAMGKQVMGS 847 > mmu:70428 Polr3b, 2700078H01Rik, A330032P03Rik, C85372, RPC2; polymerase (RNA) III (DNA directed) polypeptide B (EC:2.7.7.6); K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1133 Score = 56.2 bits (134), Expect = 3e-08, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 0/64 (0%) Query 76 MDVRGFQEVRDALVTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQ 135 +DV + AL + ++E+ P L V A L P+ +HNQSPRN YQC M KQ Sbjct 633 LDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQ 692 Query 136 TMGT 139 MGT Sbjct 693 AMGT 696 > hsa:55703 POLR3B, C128, DKFZp686B10117, FLJ10388, RPC2; polymerase (RNA) III (DNA directed) polypeptide B (EC:2.7.7.6); K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1075 Score = 55.8 bits (133), Expect = 4e-08, Method: Composition-based stats. Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 0/64 (0%) Query 76 MDVRGFQEVRDALVTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQ 135 +DV + AL + ++E+ P L V A L P+ +HNQSPRN YQC M KQ Sbjct 575 LDVNEENDCNIALYEHTINKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQ 634 Query 136 TMGT 139 MGT Sbjct 635 AMGT 638 > dre:562329 polr3b, si:dkey-103i16.3, wu:fc20h06; polymerase (RNA) III (DNA directed) polypeptide B; K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1140 Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 23/41 (56%), Positives = 28/41 (68%), Gaps = 0/41 (0%) Query 99 YVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGT 139 ++E+ P L V A L P+ +HNQSPRN YQC M KQ MGT Sbjct 653 HLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGT 693 > tgo:TGME49_072740 DNA-directed RNA polymerase III subunit, putative (EC:2.7.7.6); K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1332 Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 0/53 (0%) Query 87 ALVTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGT 139 AL + ++E+ P L V A L F NHNQSPRN YQC M KQ MG Sbjct 824 ALREEDITAETTHLEIDPLTLLGVVAGLIAFPNHNQSPRNTYQCAMGKQAMGA 876 > ath:AT5G45140 NRPC2; NRPC2; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding; K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1161 Score = 55.1 bits (131), Expect = 8e-08, Method: Composition-based stats. Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 0/40 (0%) Query 99 YVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG 138 ++E+ P L V A L P+ +HNQSPRN YQC M KQ MG Sbjct 678 HIEIEPFTILGVVAGLIPYPHHNQSPRNTYQCAMGKQAMG 717 > sce:YOR151C RPB2, RPB150, RPO22, SIT2, SOH2; B150 (EC:2.7.7.6); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1224 Score = 54.7 bits (130), Expect = 9e-08, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%) Query 76 MDVRGFQEVRDALVTSHVPVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQ 135 +DV + +R SH + + E+ P+ L V A++ PF +HNQSPRN YQ M KQ Sbjct 721 LDVDPAKRIR----VSHHATTFTHCEIHPSMILGVAASIIPFPDHNQSPRNTYQSAMGKQ 776 Query 136 TMG 138 MG Sbjct 777 AMG 779 > tgo:TGME49_058210 DNA-directed RNA polymerase II subunit RPB2, putative (EC:2.7.7.6); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1259 Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 22/43 (51%), Positives = 29/43 (67%), Gaps = 0/43 (0%) Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGT 139 Y + E+ P+ L V A++ PF +HNQSPRN+YQ M KQ MG Sbjct 767 YTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMGV 809 > cpv:cgd7_3720 RNA polymerase beta subunit ; K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1177 Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats. Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 0/42 (0%) Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG 138 Y + E+ P+ L V A++ PF +HNQSPRN+YQ M KQ MG Sbjct 697 YTHCEIHPSLILGVCASIIPFPDHNQSPRNVYQSAMGKQAMG 738 > xla:398890 polr2b, MGC68569; polymerase (RNA) II (DNA directed) polypeptide B, 140kDa; K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=949 Score = 54.3 bits (129), Expect = 1e-07, Method: Composition-based stats. Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 3/49 (6%) Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG---TPFH 142 Y + E+ P+ L V A++ PF +HNQSPRN YQ M KQ MG T FH Sbjct 693 YTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFH 741 > dre:100149268 polr2b, zgc:109952; polymerase (RNA) II (DNA directed) polypeptide B (EC:2.7.7.6); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1174 Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 3/49 (6%) Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG---TPFH 142 Y + E+ P+ L V A++ PF +HNQSPRN YQ M KQ MG T FH Sbjct 693 YTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFH 741 > mmu:231329 Polr2b, MGC47046, Pol2rb, Rpb140, Rpb2; polymerase (RNA) II (DNA directed) polypeptide B (EC:2.7.7.6); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1174 Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 3/49 (6%) Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG---TPFH 142 Y + E+ P+ L V A++ PF +HNQSPRN YQ M KQ MG T FH Sbjct 693 YTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFH 741 > hsa:5431 POLR2B, POL2RB, RPB2, hRPB140, hsRPB2; polymerase (RNA) II (DNA directed) polypeptide B, 140kDa (EC:2.7.7.6); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1174 Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 3/49 (6%) Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG---TPFH 142 Y + E+ P+ L V A++ PF +HNQSPRN YQ M KQ MG T FH Sbjct 693 YTHCEIHPSMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFH 741 > pfa:PFB0715w DNA-directed RNA polymerase II second largest subunit, putative; K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1340 Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats. Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 0/42 (0%) Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG 138 + + E+ P+ L V A++ PFS+HNQSPRN YQ M KQ MG Sbjct 713 FTHCEIHPSLILGVCASIIPFSDHNQSPRNTYQSAMGKQAMG 754 > ath:AT4G21710 NRPB2; NRPB2; DNA binding / DNA-directed RNA polymerase; K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1188 Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 22/42 (52%), Positives = 28/42 (66%), Gaps = 0/42 (0%) Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG 138 Y + E+ P+ L V A++ PF +HNQSPRN YQ M KQ MG Sbjct 701 YTHCEIHPSLILGVCASIIPFPDHNQSPRNTYQSAMGKQAMG 742 > sce:YOR207C RET1, PDS2, RPC128, RPC2; C128 (EC:2.7.7.6); K03021 DNA-directed RNA polymerase III subunit RPC2 [EC:2.7.7.6] Length=1149 Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats. Identities = 32/98 (32%), Positives = 48/98 (48%), Gaps = 5/98 (5%) Query 46 VVQDNQGRLESDY-QSLFNGQCD-SSTPNCGRMDVRGFQEVRD---ALVTSHVPVRYDYV 100 +V D Q R++ + + L +G+ D G ++ E D AL + ++ Sbjct 614 IVSDGQSRVKDIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSMTHL 673 Query 101 ELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG 138 E+ P L A L P+ +HNQSPRN YQC M KQ +G Sbjct 674 EIEPFTILGAVAGLIPYPHHNQSPRNTYQCAMGKQAIG 711 > cel:C26E6.4 rpb-2; RNA Polymerase II (B) subunit family member (rpb-2); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1193 Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 3/47 (6%) Query 99 YVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG---TPFH 142 + E+ P L V A++ PF +HNQSPRN YQ M KQ MG T FH Sbjct 701 HCEIHPAMILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGVYTTNFH 747 > bbo:BBOV_II002050 18.m06162; DNA-directed RNA polymerase, beta subunit family protein (EC:2.7.7.6); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1207 Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 0/42 (0%) Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG 138 Y + E+ P+ L V A++ PF + NQSPRN YQ M KQ MG Sbjct 732 YTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQSAMGKQAMG 773 > tpv:TP04_0340 DNA-directed RNA polymerase II subunit (EC:2.7.7.6); K03010 DNA-directed RNA polymerase II subunit RPB2 [EC:2.7.7.6] Length=1190 Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 21/42 (50%), Positives = 27/42 (64%), Gaps = 0/42 (0%) Query 97 YDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMG 138 Y + E+ P+ L V A++ PF + NQSPRN YQ M KQ MG Sbjct 707 YTHCEIHPSMILGVCASIIPFPDQNQSPRNTYQSAMGKQAMG 748 > ath:AT3G18090 NRPD2B; NRPD2b; DNA binding / DNA-directed RNA polymerase/ ribonucleoside binding Length=1055 Score = 37.0 bits (84), Expect = 0.020, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 0/38 (0%) Query 94 PVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQ 131 P Y + EL + L V+ A+ PF+NH+ R +YQ Q Sbjct 565 PKNYTHCELDLSFLLGVSCAIVPFANHDHGKRVLYQSQ 602 > ath:AT3G23780 NRPD2A; NRPD2A; DNA binding / DNA-directed RNA polymerase Length=1172 Score = 35.0 bits (79), Expect = 0.070, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 0/38 (0%) Query 94 PVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQ 131 P Y + EL + L V+ A+ PF+NH+ R +YQ Q Sbjct 683 PKIYTHCELDLSFLLGVSCAVVPFANHDHGRRVLYQSQ 720 > xla:734566 c12orf5, MGC115461, tigar; chromosome 12 open reading frame 5 (EC:3.1.3.46); K14634 fructose-2,6-bisphosphatase [EC:3.1.3.46] Length=275 Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 11/86 (12%) Query 49 DNQGRLESDYQSLF---NGQCDSSTPNCG------RMDVRGFQEVRDALVTSHVPVRYDY 99 D +GR S+ + + GQC S TP G R + F E LV + V+ + Sbjct 94 DAEGRPLSELKVMAKKAGGQCPSYTPPGGETLEQVRACAKDFFEYLCQLVMAESSVK-EK 152 Query 100 VELSPTAFLSVTAA-LTPFSNHNQSP 124 EL + + + + L PF NHN+ P Sbjct 153 SELGASGMVGIMSTDLAPFVNHNKEP 178 > hsa:5320 PLA2G2A, MOM1, PLA2, PLA2B, PLA2L, PLA2S, PLAS1, sPLA2; phospholipase A2, group IIA (platelets, synovial fluid) (EC:3.1.1.4); K01047 phospholipase A2 [EC:3.1.1.4] Length=144 Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 0/42 (0%) Query 32 LRDQIAEVDNTEDTVVQDNQGRLESDYQSLFNGQCDSSTPNC 73 R Q+ E D T N+ YQ N C STP C Sbjct 103 CRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRGSTPRC 144 > dre:449792 cryba1c; zgc:101859 Length=206 Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust. Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 0/50 (0%) Query 59 QSLFNGQCDSSTPNCGRMDVRGFQEVRDALVTSHVPVRYDYVELSPTAFL 108 Q F G+C T C + RGF +R V S V Y++ + F+ Sbjct 29 QEHFQGKCQELTSECRNIQERGFDNIRSIRVESGAWVGYEHHDFQGQQFV 78 > eco:b3987 rpoB, ECK3978, ftsR, groN, JW3950, mbrD?, nitB, rif, ron, sdgB, stl, stv, tabD, tabG; RNA polymerase, beta subunit (EC:2.7.7.6); K03043 DNA-directed RNA polymerase subunit beta [EC:2.7.7.6] Length=1342 Score = 31.2 bits (69), Expect = 1.1, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 0/42 (0%) Query 98 DYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGT 139 DY+++S +SV A+L PF H+ + R + M +Q + T Sbjct 651 DYMDVSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPT 692 > ath:AT1G54560 XIE; XIE; motor/ protein binding Length=1529 Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 6/108 (5%) Query 34 DQIAEVDNTEDTVVQDNQGRLESDYQSLFNGQCDSSTPNCGRMDVRGFQEVRDALVTSHV 93 D + E N +D VQ G+ + S + D P G D+ + + V ++ Sbjct 27 DGLVEKINGQDVEVQATNGKKITAKLSKIYPK-DMEAPAGGVDDMTKLSYLHEPGVLQNL 85 Query 94 PVRYDYVELSPTAFLSVTAALTPFSNHNQSPRNIYQCQMLKQTMGTPF 141 +RY+ E+ T ++ A+ PF Q +IY M++Q G PF Sbjct 86 KIRYELNEIY-TYTGNILIAINPF----QRLPHIYDAHMMQQYKGAPF 128 > cel:C36A4.8 brc-1; BRCa homolog (tumor suppressor gene Brca1) family member (brc-1) Length=547 Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 0/37 (0%) Query 39 VDNTEDTVVQDNQGRLESDYQSLFNGQCDSSTPNCGR 75 V + +D VV+D++G L+ D L N C +S N G+ Sbjct 323 VASDDDEVVEDSEGELQIDEDDLANVTCATSVRNIGK 359 > sce:YMR136W GAT2; Gat2p Length=560 Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust. Identities = 11/32 (34%), Positives = 20/32 (62%), Gaps = 0/32 (0%) Query 67 DSSTPNCGRMDVRGFQEVRDALVTSHVPVRYD 98 +SS+P ++ + QE+ D++ T H+P YD Sbjct 289 ESSSPFSNKIKLPSLQELTDSISTQHLPTFYD 320 > dre:550433 cryba1l, zgc:112134; crystallin, beta A1, like Length=199 Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust. Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 0/50 (0%) Query 59 QSLFNGQCDSSTPNCGRMDVRGFQEVRDALVTSHVPVRYDYVELSPTAFL 108 Q F G+C T C + GF +R V S V Y++ + F+ Sbjct 22 QEHFQGKCQEFTNECCNIQCCGFDNIRSIRVESGAWVGYEHHDFQGQQFI 71 > ath:AT3G12950 catalytic Length=558 Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust. Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 2/83 (2%) Query 1 AMVMLVATRSTGHVLLNERSMTAHQPLIEKILRDQIAEVDNTEDTVVQDNQGRLESDYQS 60 M +VA S +V L + + + L + Q+ +D E + +E + Sbjct 440 GMSSMVADSSPPYVNLKKEKRSPEEKLEASLGPLQVQHIDLEERIETKGGAPSVEHQFMP 499 Query 61 LFNGQCDSST-PNCGRMD-VRGF 81 F+GQC +S P R D V GF Sbjct 500 TFSGQCSASAWPETAREDLVAGF 522 Lambda K H 0.318 0.130 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2683748972 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40