bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_6940_orf1 Length=98 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_064450 DNA topoisomerase III beta-1, putative (EC:5... 139 2e-33 mmu:21976 Top3b; topoisomerase (DNA) III beta (EC:5.99.1.2); K... 118 4e-27 xla:398564 top3b, MGC53016; topoisomerase (DNA) III beta (EC:5... 116 1e-26 hsa:8940 TOP3B, FLJ39376; topoisomerase (DNA) III beta (EC:5.9... 115 3e-26 dre:100329289 topoisomerase (DNA) III beta-like; K03165 DNA to... 114 8e-26 cpv:cgd6_2390 DNA topoisomerase III beta-1 ; K03165 DNA topois... 109 2e-24 ath:AT2G32000 DNA topoisomerase family protein; K03165 DNA top... 102 4e-22 bbo:BBOV_II000360 18.m06014; DNA topoisomerase; K03165 DNA top... 96.3 2e-20 cel:Y48C3A.14 hypothetical protein; K03165 DNA topoisomerase I... 62.0 4e-10 mmu:21975 Top3a, MGC106383; topoisomerase (DNA) III alpha (EC:... 40.4 0.001 xla:444125 top3a, MGC80537, xtop3a; topoisomerase (DNA) III al... 39.3 0.003 sce:YLR234W TOP3, EDR1; DNA Topoisomerase III, conserved prote... 35.4 0.048 tgo:TGME49_026480 DNA topoisomerase III alpha, putative (EC:5.... 29.6 2.5 cel:R03G8.1 hypothetical protein 29.6 2.7 mmu:217012 Unc45b, AA445617, Cmya4, D230041A13Rik, MGC91090, U... 29.6 2.7 tgo:TGME49_023590 proteasome component PRE3 precursor, putativ... 28.1 6.3 > tgo:TGME49_064450 DNA topoisomerase III beta-1, putative (EC:5.99.1.2); K03165 DNA topoisomerase III [EC:5.99.1.2] Length=841 Score = 139 bits (351), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 66/97 (68%), Positives = 77/97 (79%), Gaps = 0/97 (0%) Query 2 LGICLVHGLMAIDAELVLPFVRASIEQLVDVIAKGKAPREAVVQHSLKIFKAKFCYFVNK 61 LG+CLVHG M ID +LVLP VRASIE LVDVIA+GKA AVV HSL +FK KF YF+ + Sbjct 522 LGVCLVHGYMQIDPDLVLPSVRASIEALVDVIAQGKADITAVVTHSLYMFKLKFAYFLKQ 581 Query 62 VERMDALFDVTFTALSATGNPLSRCGRCNRYMNFIAR 98 +ERMD LF+ +FT L+ TGN LSRCGRCNRYMN I + Sbjct 582 IERMDMLFEASFTMLAQTGNALSRCGRCNRYMNLITK 618 > mmu:21976 Top3b; topoisomerase (DNA) III beta (EC:5.99.1.2); K03165 DNA topoisomerase III [EC:5.99.1.2] Length=862 Score = 118 bits (296), Expect = 4e-27, Method: Composition-based stats. Identities = 52/96 (54%), Positives = 74/96 (77%), Gaps = 0/96 (0%) Query 1 DLGICLVHGLMAIDAELVLPFVRASIEQLVDVIAKGKAPREAVVQHSLKIFKAKFCYFVN 60 +LGI LVHG IDAELVLP +R+++E+ +++IA+GKA V+ H+L IFK KF YFV+ Sbjct 539 NLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYHQVLGHTLDIFKRKFHYFVD 598 Query 61 KVERMDALFDVTFTALSATGNPLSRCGRCNRYMNFI 96 + MD L +V+F+ L+ATG PLSRCG+C+R+M +I Sbjct 599 SIAGMDELMEVSFSPLAATGKPLSRCGKCHRFMKYI 634 > xla:398564 top3b, MGC53016; topoisomerase (DNA) III beta (EC:5.99.1.2); K03165 DNA topoisomerase III [EC:5.99.1.2] Length=858 Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 52/95 (54%), Positives = 74/95 (77%), Gaps = 0/95 (0%) Query 2 LGICLVHGLMAIDAELVLPFVRASIEQLVDVIAKGKAPREAVVQHSLKIFKAKFCYFVNK 61 LGI LVHG IDAELVLP +R+++E+ +++IA+GKA + V+ H+L IFK KF YFV+ Sbjct 540 LGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKANFQQVLDHTLDIFKRKFHYFVDS 599 Query 62 VERMDALFDVTFTALSATGNPLSRCGRCNRYMNFI 96 + MD L +V+F+ L+ATG PLSRCG+C+R+M +I Sbjct 600 IAGMDELMEVSFSPLAATGKPLSRCGKCHRFMKYI 634 > hsa:8940 TOP3B, FLJ39376; topoisomerase (DNA) III beta (EC:5.99.1.2); K03165 DNA topoisomerase III [EC:5.99.1.2] Length=862 Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 51/96 (53%), Positives = 74/96 (77%), Gaps = 0/96 (0%) Query 1 DLGICLVHGLMAIDAELVLPFVRASIEQLVDVIAKGKAPREAVVQHSLKIFKAKFCYFVN 60 +LGI LVHG IDAELVLP +R+++E+ +++IA+GKA V+ H+L +FK KF YFV+ Sbjct 539 NLGIVLVHGYYKIDAELVLPTIRSAVEKQLNLIAQGKADYRQVLGHTLDVFKRKFHYFVD 598 Query 61 KVERMDALFDVTFTALSATGNPLSRCGRCNRYMNFI 96 + MD L +V+F+ L+ATG PLSRCG+C+R+M +I Sbjct 599 SIAGMDELMEVSFSPLAATGKPLSRCGKCHRFMKYI 634 > dre:100329289 topoisomerase (DNA) III beta-like; K03165 DNA topoisomerase III [EC:5.99.1.2] Length=861 Score = 114 bits (285), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 51/96 (53%), Positives = 74/96 (77%), Gaps = 0/96 (0%) Query 1 DLGICLVHGLMAIDAELVLPFVRASIEQLVDVIAKGKAPREAVVQHSLKIFKAKFCYFVN 60 +LGI LVHG IDA+LVLP +R+++E+ + +IA GKA + V+QH+L IFK KF YFV+ Sbjct 539 NLGIVLVHGYYKIDADLVLPTIRSAVEKQLTLIALGKANFQQVLQHTLDIFKRKFHYFVD 598 Query 61 KVERMDALFDVTFTALSATGNPLSRCGRCNRYMNFI 96 + MD L +V+F+ ++ATG PLSRCG+C+R+M +I Sbjct 599 SIAGMDELMEVSFSPIAATGKPLSRCGKCHRFMKYI 634 > cpv:cgd6_2390 DNA topoisomerase III beta-1 ; K03165 DNA topoisomerase III [EC:5.99.1.2] Length=835 Score = 109 bits (273), Expect = 2e-24, Method: Composition-based stats. Identities = 48/96 (50%), Positives = 71/96 (73%), Gaps = 0/96 (0%) Query 2 LGICLVHGLMAIDAELVLPFVRASIEQLVDVIAKGKAPREAVVQHSLKIFKAKFCYFVNK 61 LGI LVHG+M ID ELVLP +R+ +E+ VD+IAKGK +AV++HSL +FK KF YF Sbjct 539 LGIALVHGIMNIDHELVLPKIRSEMEKYVDLIAKGKYNHKAVLKHSLSVFKLKFLYFAEN 598 Query 62 VERMDALFDVTFTALSATGNPLSRCGRCNRYMNFIA 97 + ++LF + FT ++A+ + +SRCG+C RY+ +I+ Sbjct 599 ISLFESLFRLGFTNITASCSRISRCGQCKRYLTYIS 634 > ath:AT2G32000 DNA topoisomerase family protein; K03165 DNA topoisomerase III [EC:5.99.1.2] Length=838 Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 46/96 (47%), Positives = 65/96 (67%), Gaps = 0/96 (0%) Query 2 LGICLVHGLMAIDAELVLPFVRASIEQLVDVIAKGKAPREAVVQHSLKIFKAKFCYFVNK 61 LGI L+ G ID +L LP +R+ IEQ + ++AKG+A VVQH ++ F+ KF YFV + Sbjct 507 LGITLIRGYQCIDPDLCLPDIRSFIEQQITLVAKGQADHSHVVQHVIQQFRRKFSYFVQQ 566 Query 62 VERMDALFDVTFTALSATGNPLSRCGRCNRYMNFIA 97 +E MDALF+ F+ L+ +G LS+CG+C RYM I Sbjct 567 IEHMDALFEAQFSPLADSGRALSKCGKCLRYMKHIT 602 > bbo:BBOV_II000360 18.m06014; DNA topoisomerase; K03165 DNA topoisomerase III [EC:5.99.1.2] Length=878 Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 43/97 (44%), Positives = 64/97 (65%), Gaps = 0/97 (0%) Query 2 LGICLVHGLMAIDAELVLPFVRASIEQLVDVIAKGKAPREAVVQHSLKIFKAKFCYFVNK 61 LG LV G M +D ELVLP VR +IE ++IA GKA E+V+ H ++F+ KF +++ K Sbjct 564 LGKALVDGYMQVDPELVLPSVRGAIEGYCNLIADGKADCESVIDHVCRMFRMKFEHYITK 623 Query 62 VERMDALFDVTFTALSATGNPLSRCGRCNRYMNFIAR 98 ++ ++ F+ FT + G P+SRCG CNRYM ++ R Sbjct 624 IDSINTFFETQFTPIEDFGVPMSRCGTCNRYMLYLNR 660 > cel:Y48C3A.14 hypothetical protein; K03165 DNA topoisomerase III [EC:5.99.1.2] Length=855 Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 29/104 (27%) Query 2 LGICLVHGLMAIDAELVLPFVRASIEQLVDVIAKGKAPREAVVQHSLKIFKAKF------ 55 LG CLV G +D ELVLP +RA +E+ ++++A GKA + + F+ KF Sbjct 540 LGQCLVRGYWKVDPELVLPTMRAELEEQLNLVASGKA------DYLDRNFEKKFLIENFI 593 Query 56 ---CYFVNKVERMDALFDVTFTALSATGNPLSRCGRCNRYMNFI 96 +FV K E TG P SRCG+C RYM + Sbjct 594 FFKTFFVEKNEN--------------TGKPFSRCGKCRRYMKLV 623 > mmu:21975 Top3a, MGC106383; topoisomerase (DNA) III alpha (EC:5.99.1.2); K03165 DNA topoisomerase III [EC:5.99.1.2] Length=1003 Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 10/102 (9%) Query 2 LGICLVHGLMAIDAELVLPFVRASIEQLVDVIAKGKAPREAVVQHSLKIFKAKFCYFVNK 61 LG+ LV G ++ E+ P +RA +E + +I +GK + V++ ++ +K F V K Sbjct 564 LGMGLVEGYDSMGYEMSKPDLRAELEADLKLICEGKKDKFQVLRQQVQKYKQVFIEAVAK 623 Query 62 VERMDA-----LFDVTFTA-----LSATGNPLSRCGRCNRYM 93 +++D L + T A A P+ +C +CN+ M Sbjct 624 AKKLDEALSQYLGERTEMAQQEEIYPAMPEPVRKCPQCNKDM 665 > xla:444125 top3a, MGC80537, xtop3a; topoisomerase (DNA) III alpha (EC:5.99.1.2); K03165 DNA topoisomerase III [EC:5.99.1.2] Length=1022 Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust. Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 10/103 (9%) Query 1 DLGICLVHGLMAIDAELVLPFVRASIEQLVDVIAKGKAPREAVVQHSLKIFKAKFCYFVN 60 +LG+ LV G ++ ++ P +RA +E + +I +GK + V++ ++ +K F Sbjct 568 ELGMGLVEGYDSMGFQMSKPDLRAELESDLKLICEGKKDKFTVLRLQIQKYKQVFVEAAA 627 Query 61 KVERMDALFDVTFTA----------LSATGNPLSRCGRCNRYM 93 K ++D F + T P+ +C +CNR M Sbjct 628 KATKLDEALSQYFGQAAEAVPQQEIYAETPLPVRKCPQCNRDM 670 > sce:YLR234W TOP3, EDR1; DNA Topoisomerase III, conserved protein that functions in a complex with Sgs1p and Rmi1p to relax single-stranded negatively-supercoiled DNA preferentially, involved in telomere stability and regulation of mitotic recombination (EC:5.99.1.2); K03165 DNA topoisomerase III [EC:5.99.1.2] Length=656 Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust. Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 3/61 (4%) Query 2 LGICLVHGLMAIDAE--LVLPFVRASIEQLVDVIAKGKAPREAVVQHSLKIFKAKFCYFV 59 LG+ LVHG AI E PF R +EQ + I +G A + VV+ ++ ++ K+ + Sbjct 580 LGVSLVHGFEAIGLEDSFAKPFQRREMEQDLKKICEGHASKTDVVKDIVEKYR-KYWHKT 638 Query 60 N 60 N Sbjct 639 N 639 > tgo:TGME49_026480 DNA topoisomerase III alpha, putative (EC:5.99.1.2); K03165 DNA topoisomerase III [EC:5.99.1.2] Length=677 Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust. Identities = 25/108 (23%), Positives = 43/108 (39%), Gaps = 14/108 (12%) Query 1 DLGICLVHGLMAI----DAELVLPFVRASIEQLVDVIAKGKAPREAVVQHSLKIFKAKFC 56 DLG+ L G + +L LP +RA +E + ++A+G ++ V+ + K F Sbjct 543 DLGVALYQGFKRLAEVSGVDLSLPDLRARMEADMALVARGAKTKQEVLDLHVSEMKRVFL 602 Query 57 YFVNKVERMDALF---------DVTFTALSATGNPLSRCGRCNRYMNF 95 + MD V ++ N S CG+C M+ Sbjct 603 LLKSHAAHMDTEMRNRLGGLEDSVGRDGVTLVAN-FSECGKCRAPMDL 649 > cel:R03G8.1 hypothetical protein Length=663 Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%) Query 32 VIAKGKAPREAVVQHSLKIFKAKFCYFVNKVERMDALFDVTFTALSATGNPLSRC 86 VIA+ K P EA + ++KI + V+KVER+D+ S T P+ C Sbjct 591 VIAQMKKPSEAKFKATVKITEGNI-KIVSKVERVDSYGKTADCIESETHRPICYC 644 > mmu:217012 Unc45b, AA445617, Cmya4, D230041A13Rik, MGC91090, Unc45; unc-45 homolog B (C. elegans) Length=929 Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust. Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%) Query 3 GICLVHGLMAIDAELVLPFVRASIEQLVDVIAKGK--APREAVVQ 45 G+ + H L++ DAEL V + + +++ V+ K + R AVVQ Sbjct 866 GLVIAHNLLSADAELARKLVESELLEILTVVGKQEPDEKRAAVVQ 910 > tgo:TGME49_023590 proteasome component PRE3 precursor, putative (EC:3.4.25.1); K02738 20S proteasome subunit beta 1 [EC:3.4.25.1] Length=245 Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust. Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Query 4 ICLVHGLMAIDAELVLPFVRASIEQLVDVIAKGKAPREAVVQHSLKIFKAKFCY 57 IC+ A D + V V+ I+Q + KG+ PR V+ + +F++ CY Sbjct 86 ICVCRSGSAADTQAVTQIVKLYIQQYAQELPKGEEPR---VEAAANVFQS-LCY 135 Lambda K H 0.330 0.141 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2050913756 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40