bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_7116_orf2 Length=115 Score E Sequences producing significant alignments: (Bits) Value pfa:PFB0865w small nuclear ribonucleoprotein, putative; K11096... 92.0 4e-19 cpv:cgd4_3190 small nuclear ribonucleoprotein ; K11096 small n... 88.6 5e-18 tpv:TP02_0729 small nuclear ribonucleoprotein D2; K11096 small... 87.4 9e-18 tgo:TGME49_070830 small nuclear ribonucleoprotein Sm D2, putat... 85.5 3e-17 bbo:BBOV_I004230 19.m02306; small nuclear ribonucleoprotein; K... 79.3 2e-15 mmu:100043618 Gm10120; small nuclear ribonucleoprotein D2 pseu... 71.2 8e-13 cel:C52E4.3 snr-4; Small Nuclear Ribonucleoprotein family memb... 71.2 8e-13 mmu:107686 Snrpd2, 1810009A06Rik, MGC62953, SMD2; small nuclea... 70.5 1e-12 hsa:6633 SNRPD2, SMD2, SNRPD1, Sm-D2; small nuclear ribonucleo... 70.5 1e-12 dre:550244 snrpd2, im:6908977, si:dkey-113g17.2, zgc:110732; s... 70.5 1e-12 xla:100381103 snrpd2, sm-d2, smd2, snrpd1; small nuclear ribon... 70.5 1e-12 ath:AT2G47640 small nuclear ribonucleoprotein D2, putative / s... 70.1 2e-12 ath:AT3G62840 hypothetical protein 70.1 2e-12 mmu:545531 Gm5848, EG545531; predicted pseudogene 5848 68.9 sce:YLR275W SMD2; Sm D2; K11096 small nuclear ribonucleoprotei... 55.8 4e-08 cel:Y62E10A.12 lsm-3; LSM Sm-like protein family member (lsm-3... 40.4 0.002 tpv:TP02_0106 hypothetical protein; K12622 U6 snRNA-associated... 40.0 0.002 xla:100049097 lsm3; LSM3 homolog, U6 small nuclear RNA associa... 37.4 0.011 mmu:67678 Lsm3, 1010001J12Rik, 2610005D18Rik, 6030401D18Rik, S... 37.4 0.013 hsa:27258 LSM3, SMX4, USS2, YLR438C; LSM3 homolog, U6 small nu... 37.4 0.013 bbo:BBOV_III010410 17.m07899; LSM domain containing protein; K... 36.2 0.029 ath:AT1G76860 small nuclear ribonucleoprotein, putative / snRN... 35.0 0.059 pfa:PF08_0049 lsm3 homologue, putative; K12622 U6 snRNA-associ... 34.7 0.080 ath:AT5G44500 small nuclear ribonucleoprotein associated prote... 34.3 0.090 cpv:cgd7_690 small nuclear ribonucleoprotein ; K12622 U6 snRNA... 34.3 0.091 ath:AT1G21190 small nuclear ribonucleoprotein, putative / snRN... 34.3 0.095 ath:AT4G20440 smB; smB (small nuclear ribonucleoprotein associ... 33.9 0.12 tgo:TGME49_098970 LSM domain-containing protein ; K12622 U6 sn... 33.1 0.23 hsa:134353 LSM11, FLJ38273; LSM11, U7 small nuclear RNA associ... 32.7 0.26 sce:YLR438C-A LSM3, SMX4, USS2; Lsm (Like Sm) protein; part of... 32.7 0.30 cpv:cgd1_2910 hypothetical protein ; K11086 small nuclear ribo... 31.6 0.62 mmu:72290 Lsm11, 2210404M20Rik, AV079530; U7 snRNP-specific Sm... 31.6 0.64 cpv:cgd7_4580 U6 snRNA-associated Sm-like protein LSm5. SM dom... 31.6 0.66 tpv:TP02_0362 small nuclear ribonucleoprotein B; K11086 small ... 31.2 0.89 mmu:67873 Mri1, 2410018C20Rik; methylthioribose-1-phosphate is... 30.8 1.0 dre:100004030 lsm11, im:7149708; LSM11, U7 small nuclear RNA a... 30.4 1.5 ath:AT1G65810 tRNA-splicing endonuclease positive effector-rel... 29.6 2.3 hsa:374470 C12orf42, FLJ25323, MGC43592, MGC57409; chromosome ... 29.6 2.5 cel:F40F8.9 lsm-1; LSM Sm-like protein family member (lsm-1); ... 29.3 2.8 dre:437002 wipi2, zgc:92576; WD repeat domain, phosphoinositid... 29.3 3.6 hsa:84245 MRI1, MGC3207, MTNA, Ypr118w; methylthioribose-1-pho... 28.9 4.3 eco:b1095 fabF, cvc, ECK1081, fabJ, JW1081, vtr; 3-oxoacyl-[ac... 28.1 7.4 > pfa:PFB0865w small nuclear ribonucleoprotein, putative; K11096 small nuclear ribonucleoprotein D2 Length=101 Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 43/52 (82%), Positives = 46/52 (88%), Gaps = 0/52 (0%) Query 64 NRDNPEGGPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVR 115 NRDNPE GPL LLS CV DN+QVL+NCRNNRK+L RVKAFDRHCNLLLT VR Sbjct 10 NRDNPEDGPLGLLSECVKDNAQVLINCRNNRKILGRVKAFDRHCNLLLTGVR 61 > cpv:cgd4_3190 small nuclear ribonucleoprotein ; K11096 small nuclear ribonucleoprotein D2 Length=106 Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 38/51 (74%), Positives = 44/51 (86%), Gaps = 0/51 (0%) Query 65 RDNPEGGPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVR 115 +DNP GPL+LL+ CV N+Q+LVNCRNNRK+L RVKAFDRHCNLLLTD R Sbjct 14 KDNPSEGPLSLLTECVKTNTQILVNCRNNRKILGRVKAFDRHCNLLLTDAR 64 > tpv:TP02_0729 small nuclear ribonucleoprotein D2; K11096 small nuclear ribonucleoprotein D2 Length=106 Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 40/67 (59%), Positives = 50/67 (74%), Gaps = 1/67 (1%) Query 49 MAAAADGDKAAPHLVNRDNPEGGPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCN 108 M+ D L N+DNP GPL++L CV +N QVL+NCRNNRK+LARVKAFDRHCN Sbjct 1 MSTKVKQDPTPMELDNKDNP-AGPLSILEECVRENCQVLINCRNNRKILARVKAFDRHCN 59 Query 109 LLLTDVR 115 ++LT+VR Sbjct 60 MILTNVR 66 > tgo:TGME49_070830 small nuclear ribonucleoprotein Sm D2, putative ; K11096 small nuclear ribonucleoprotein D2 Length=104 Score = 85.5 bits (210), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 39/52 (75%), Positives = 46/52 (88%), Gaps = 0/52 (0%) Query 64 NRDNPEGGPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVR 115 NRD+P GPL++L+ V DNSQVL+NCRNNRK+L RVKAFDRHCNL+LTDVR Sbjct 11 NRDHPPEGPLSVLAASVKDNSQVLINCRNNRKVLGRVKAFDRHCNLVLTDVR 62 > bbo:BBOV_I004230 19.m02306; small nuclear ribonucleoprotein; K11096 small nuclear ribonucleoprotein D2 Length=162 Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 39/69 (56%), Positives = 47/69 (68%), Gaps = 9/69 (13%) Query 47 GIMAAAADGDKAAPHLVNRDNPEGGPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRH 106 GI + + DK P GPL++L CV DNSQVL+NCR+NRKLL RVKAFDRH Sbjct 63 GIRSMSTTEDKDCP---------SGPLSVLEACVRDNSQVLINCRSNRKLLGRVKAFDRH 113 Query 107 CNLLLTDVR 115 N++LTDVR Sbjct 114 FNMILTDVR 122 > mmu:100043618 Gm10120; small nuclear ribonucleoprotein D2 pseudogene Length=118 Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 29/45 (64%), Positives = 41/45 (91%), Gaps = 0/45 (0%) Query 71 GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVR 115 GPL++L++ V +N+QVL+NCRNN+KLL RVKAFDRHCN++L +V+ Sbjct 27 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71 > cel:C52E4.3 snr-4; Small Nuclear Ribonucleoprotein family member (snr-4); K11096 small nuclear ribonucleoprotein D2 Length=118 Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 35/71 (49%), Positives = 50/71 (70%), Gaps = 4/71 (5%) Query 49 MAAAAD--GDKAAPHLVNRDNPEG--GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFD 104 M+A A + A L +++ E GPL++L+ V +N QVL+NCRNN+KLL RVKAFD Sbjct 1 MSAQAKPRSEMTAEELAAKEDEEFNVGPLSILTNSVKNNHQVLINCRNNKKLLGRVKAFD 60 Query 105 RHCNLLLTDVR 115 RHCN++L +V+ Sbjct 61 RHCNMVLENVK 71 > mmu:107686 Snrpd2, 1810009A06Rik, MGC62953, SMD2; small nuclear ribonucleoprotein D2; K11096 small nuclear ribonucleoprotein D2 Length=118 Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 29/45 (64%), Positives = 41/45 (91%), Gaps = 0/45 (0%) Query 71 GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVR 115 GPL++L++ V +N+QVL+NCRNN+KLL RVKAFDRHCN++L +V+ Sbjct 27 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71 > hsa:6633 SNRPD2, SMD2, SNRPD1, Sm-D2; small nuclear ribonucleoprotein D2 polypeptide 16.5kDa; K11096 small nuclear ribonucleoprotein D2 Length=118 Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 29/45 (64%), Positives = 41/45 (91%), Gaps = 0/45 (0%) Query 71 GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVR 115 GPL++L++ V +N+QVL+NCRNN+KLL RVKAFDRHCN++L +V+ Sbjct 27 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71 > dre:550244 snrpd2, im:6908977, si:dkey-113g17.2, zgc:110732; small nuclear ribonucleoprotein D2 polypeptide; K11096 small nuclear ribonucleoprotein D2 Length=118 Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 29/45 (64%), Positives = 41/45 (91%), Gaps = 0/45 (0%) Query 71 GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVR 115 GPL++L++ V +N+QVL+NCRNN+KLL RVKAFDRHCN++L +V+ Sbjct 27 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71 > xla:100381103 snrpd2, sm-d2, smd2, snrpd1; small nuclear ribonucleoprotein D2 polypeptide 16.5kDa; K11096 small nuclear ribonucleoprotein D2 Length=118 Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 29/45 (64%), Positives = 41/45 (91%), Gaps = 0/45 (0%) Query 71 GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVR 115 GPL++L++ V +N+QVL+NCRNN+KLL RVKAFDRHCN++L +V+ Sbjct 27 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71 > ath:AT2G47640 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative; K11096 small nuclear ribonucleoprotein D2 Length=109 Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 30/45 (66%), Positives = 39/45 (86%), Gaps = 0/45 (0%) Query 71 GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVR 115 GPL++L V +N+QVL+NCRNNRKLL RV+AFDRHCN++L +VR Sbjct 22 GPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVR 66 > ath:AT3G62840 hypothetical protein Length=108 Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 30/45 (66%), Positives = 39/45 (86%), Gaps = 0/45 (0%) Query 71 GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVR 115 GPL++L V +N+QVL+NCRNNRKLL RV+AFDRHCN++L +VR Sbjct 21 GPLSVLMMSVKNNTQVLINCRNNRKLLGRVRAFDRHCNMVLENVR 65 > mmu:545531 Gm5848, EG545531; predicted pseudogene 5848 Length=118 Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 29/45 (64%), Positives = 40/45 (88%), Gaps = 0/45 (0%) Query 71 GPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVR 115 GPL++LS+ V +N+QVL+NCRN +KLL RVKAFDRHCN++L +V+ Sbjct 27 GPLSVLSQSVKNNTQVLINCRNKKKLLGRVKAFDRHCNMVLENVK 71 > sce:YLR275W SMD2; Sm D2; K11096 small nuclear ribonucleoprotein D2 Length=110 Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 21/47 (44%), Positives = 38/47 (80%), Gaps = 0/47 (0%) Query 69 EGGPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVR 115 + GP++L++ ++ + V+++ RNN K++ARVKAFDRHCN++L +V+ Sbjct 27 KHGPMSLINDAMVTRTPVIISLRNNHKIIARVKAFDRHCNMVLENVK 73 > cel:Y62E10A.12 lsm-3; LSM Sm-like protein family member (lsm-3); K12622 U6 snRNA-associated Sm-like protein LSm3 Length=102 Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust. Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 2/43 (4%) Query 72 PLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDV 114 PL LL R LD +V V RN+R+L R++AFD+H N++L++V Sbjct 17 PLDLL-RLSLDE-RVYVKMRNDRELRGRLRAFDQHLNMVLSEV 57 > tpv:TP02_0106 hypothetical protein; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=84 Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust. Identities = 13/29 (44%), Positives = 24/29 (82%), Gaps = 0/29 (0%) Query 86 VLVNCRNNRKLLARVKAFDRHCNLLLTDV 114 + + C+N R+L+ R++AFD HCN++L++V Sbjct 22 IYLKCKNGRELVGRLQAFDEHCNMVLSEV 50 > xla:100049097 lsm3; LSM3 homolog, U6 small nuclear RNA associated; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=102 Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Query 72 PLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVR 115 PL L+ R LD ++ V RN+R+L R+ A+D+H N++L DV Sbjct 17 PLDLI-RLSLD-ERIYVKMRNDRELRGRLNAYDQHLNMILGDVE 58 > mmu:67678 Lsm3, 1010001J12Rik, 2610005D18Rik, 6030401D18Rik, SMX4, USS2; LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae); K12622 U6 snRNA-associated Sm-like protein LSm3 Length=102 Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Query 72 PLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVR 115 PL L+ R LD ++ V RN+R+L R+ A+D+H N++L DV Sbjct 17 PLDLI-RLSLD-ERIYVKMRNDRELRGRLHAYDQHLNMILGDVE 58 > hsa:27258 LSM3, SMX4, USS2, YLR438C; LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae); K12622 U6 snRNA-associated Sm-like protein LSm3 Length=102 Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust. Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 2/44 (4%) Query 72 PLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVR 115 PL L+ R LD ++ V RN+R+L R+ A+D+H N++L DV Sbjct 17 PLDLI-RLSLD-ERIYVKMRNDRELRGRLHAYDQHLNMILGDVE 58 > bbo:BBOV_III010410 17.m07899; LSM domain containing protein; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=89 Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust. Identities = 11/31 (35%), Positives = 23/31 (74%), Gaps = 0/31 (0%) Query 83 NSQVLVNCRNNRKLLARVKAFDRHCNLLLTD 113 + +V + C+ R+++ ++ A+D HCN+LL+D Sbjct 14 DERVYLKCKGGREIVGQLHAYDEHCNMLLSD 44 > ath:AT1G76860 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=98 Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust. Identities = 18/43 (41%), Positives = 29/43 (67%), Gaps = 2/43 (4%) Query 72 PLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDV 114 PL L+ R LD ++ V R++R+L ++ AFD+H N++L DV Sbjct 12 PLDLI-RLSLDE-RIYVKLRSDRELRGKLHAFDQHLNMILGDV 52 > pfa:PF08_0049 lsm3 homologue, putative; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=91 Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust. Identities = 10/32 (31%), Positives = 24/32 (75%), Gaps = 0/32 (0%) Query 84 SQVLVNCRNNRKLLARVKAFDRHCNLLLTDVR 115 ++ + C+ +R+L+ ++ A+D H N++L++VR Sbjct 20 EEIFLKCKGDRELIGKLDAYDNHLNMILSNVR 51 > ath:AT5G44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative; K11086 small nuclear ribonucleoprotein B and B' Length=254 Score = 34.3 bits (77), Expect = 0.090, Method: Compositional matrix adjust. Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 0/31 (0%) Query 83 NSQVLVNCRNNRKLLARVKAFDRHCNLLLTD 113 N ++ V ++ R+L+ + AFDRH NL+L D Sbjct 14 NYRMRVTIQDGRQLIGKFMAFDRHMNLVLGD 44 > cpv:cgd7_690 small nuclear ribonucleoprotein ; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=95 Score = 34.3 bits (77), Expect = 0.091, Method: Compositional matrix adjust. Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%) Query 72 PLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVR 115 PL L+ R LD QV V CR NR+L + A+D H N++L +V Sbjct 7 PLDLI-RLSLD-EQVFVKCRGNRELKGTLYAYDPHMNMVLGNVE 48 > ath:AT1G21190 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=97 Score = 34.3 bits (77), Expect = 0.095, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%) Query 63 VNRDNPEGGPLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDV 114 V D PL L+ + ++ V R++R+L ++ AFD+H N++L DV Sbjct 3 VEEDATVREPLDLIRLSI--EERIYVKLRSDRELRGKLHAFDQHLNMILGDV 52 > ath:AT4G20440 smB; smB (small nuclear ribonucleoprotein associated protein B); K11086 small nuclear ribonucleoprotein B and B' Length=257 Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust. Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 0/31 (0%) Query 83 NSQVLVNCRNNRKLLARVKAFDRHCNLLLTD 113 N ++ V ++ R+L+ + AFDRH NL+L D Sbjct 14 NYRMRVTIQDGRQLVGKFMAFDRHMNLVLGD 44 > tgo:TGME49_098970 LSM domain-containing protein ; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=96 Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust. Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 0/33 (0%) Query 83 NSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVR 115 + +V + CR +R+++ ++ A+D H N++L DV Sbjct 19 DERVTIKCRGDREVVGKLHAYDMHLNMVLGDVE 51 > hsa:134353 LSM11, FLJ38273; LSM11, U7 small nuclear RNA associated Length=360 Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 4/50 (8%) Query 69 EGGPLTLLSRCVLDNSQVLVNCRNNRKL----LARVKAFDRHCNLLLTDV 114 EG PL L RC+ + +V V+ R + L + AFD+ N+ LTDV Sbjct 152 EGSPLGELHRCIREGVKVNVHIRTFKGLRGVCTGFLVAFDKFWNMALTDV 201 > sce:YLR438C-A LSM3, SMX4, USS2; Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA; K12622 U6 snRNA-associated Sm-like protein LSm3 Length=89 Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust. Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 0/31 (0%) Query 83 NSQVLVNCRNNRKLLARVKAFDRHCNLLLTD 113 + +V + R R L+ ++AFD HCN++L+D Sbjct 13 DERVYIKLRGARTLVGTLQAFDSHCNIVLSD 43 > cpv:cgd1_2910 hypothetical protein ; K11086 small nuclear ribonucleoprotein B and B' Length=139 Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust. Identities = 12/31 (38%), Positives = 22/31 (70%), Gaps = 0/31 (0%) Query 83 NSQVLVNCRNNRKLLARVKAFDRHCNLLLTD 113 N ++ V +++R ++ + AFDRH NL+L+D Sbjct 6 NYRIRVTVQDDRVMVGNLMAFDRHMNLVLSD 36 > mmu:72290 Lsm11, 2210404M20Rik, AV079530; U7 snRNP-specific Sm-like protein LSM11 Length=361 Score = 31.6 bits (70), Expect = 0.64, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 6/64 (9%) Query 57 KAAPHLVNRDNP--EGGPLTLLSRCVLDNSQVLVNCRNNRKL----LARVKAFDRHCNLL 110 K AP V P EG PL L RC+ + +V V+ R + L + AFD+ N+ Sbjct 139 KKAPRNVLTRMPLHEGSPLGELHRCIREGVKVNVHIRTFKGLRGVCTGFLVAFDKFWNMA 198 Query 111 LTDV 114 LTDV Sbjct 199 LTDV 202 > cpv:cgd7_4580 U6 snRNA-associated Sm-like protein LSm5. SM domain ; K12624 U6 snRNA-associated Sm-like protein LSm5 Length=121 Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust. Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 6/53 (11%) Query 67 NPEGG----PLTLLSRCVLDNSQVLVNCRNNRKLLARVKAFDRHCNLLLTDVR 115 N +GG PL L+ +C+ +++ V + +++ ++ FD + N++L DV+ Sbjct 20 NQKGGNIILPLALIDKCI--GNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQ 70 > tpv:TP02_0362 small nuclear ribonucleoprotein B; K11086 small nuclear ribonucleoprotein B and B' Length=155 Score = 31.2 bits (69), Expect = 0.89, Method: Compositional matrix adjust. Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 0/28 (0%) Query 86 VLVNCRNNRKLLARVKAFDRHCNLLLTD 113 V V ++NRK + + A+D++ NL+L+D Sbjct 16 VRVTLKDNRKFVGTLVAYDKYMNLVLSD 43 > mmu:67873 Mri1, 2410018C20Rik; methylthioribose-1-phosphate isomerase homolog (S. cerevisiae) (EC:5.3.1.23); K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23] Length=369 Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust. Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 0/25 (0%) Query 55 GDKAAPHLVNRDNPEGGPLTLLSRC 79 GD A HL+ + NP GG +T+L+ C Sbjct 144 GDLGARHLLEQTNPRGGKVTVLTHC 168 > dre:100004030 lsm11, im:7149708; LSM11, U7 small nuclear RNA associated Length=363 Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats. Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%) Query 70 GGPLTLLSRCVLDNSQVLVNCRNNRKLLAR----VKAFDRHCNLLLTDV 114 G PL L+RCV + +V V+ R + L V AFD+ NL + DV Sbjct 189 GSPLGQLNRCVQEKIRVKVHIRTFKGLRGVCSGFVVAFDKFWNLAMVDV 237 > ath:AT1G65810 tRNA-splicing endonuclease positive effector-related Length=1050 Score = 29.6 bits (65), Expect = 2.3, Method: Composition-based stats. Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 4/31 (12%) Query 67 NPEGGPLTLLSRCVLDNSQV----LVNCRNN 93 NPEGG L L+SR + N++V V+C+ N Sbjct 219 NPEGGNLKLISRVLQSNNEVDGGSCVSCKEN 249 > hsa:374470 C12orf42, FLJ25323, MGC43592, MGC57409; chromosome 12 open reading frame 42 Length=360 Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats. Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 15/85 (17%) Query 8 LASTGPAAAA----GQACMQLGRQA-PSIGLGGLLGASGTFVGKGIMAAAADGDKAAPHL 62 L STGP+ + + G QA P LLGASG VGKG +A A + PH Sbjct 232 LQSTGPSNTELEPEERMAVPAGAQAHPDDIQSRLLGASGNPVGKGAVAMAPEMLPKHPHT 291 Query 63 VNRDNPE----------GGPLTLLS 77 P+ G PL LL+ Sbjct 292 PRDRRPQADTSLHGNLAGAPLPLLA 316 > cel:F40F8.9 lsm-1; LSM Sm-like protein family member (lsm-1); K12620 U6 snRNA-associated Sm-like protein LSm1 Length=125 Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust. Identities = 12/32 (37%), Positives = 22/32 (68%), Gaps = 0/32 (0%) Query 83 NSQVLVNCRNNRKLLARVKAFDRHCNLLLTDV 114 + ++LV R+ RKL+ +++ D+ NL+L DV Sbjct 19 DKKLLVVLRDGRKLIGFLRSIDQFANLILEDV 50 > dre:437002 wipi2, zgc:92576; WD repeat domain, phosphoinositide interacting 2 Length=131 Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust. Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 8/60 (13%) Query 48 IMAAAADGDKAAPHLVNRDNPEGGPLTLLSRCVLDNS-----QVLVNCRNNRKLLARVKA 102 ++ AAADG +L N D EGG TL+ + LD S ++L ++R L+A+ + Sbjct 33 LLVAAADG---YLYLYNLDPQEGGECTLMKQHKLDGSAEPANEILEQTAHDRPLVAQTYS 89 > hsa:84245 MRI1, MGC3207, MTNA, Ypr118w; methylthioribose-1-phosphate isomerase homolog (S. cerevisiae) (EC:5.3.1.23); K08963 methylthioribose-1-phosphate isomerase [EC:5.3.1.23] Length=369 Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust. Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 0/25 (0%) Query 55 GDKAAPHLVNRDNPEGGPLTLLSRC 79 GD A HL+ R P GG +T+L+ C Sbjct 144 GDLGARHLLERVAPSGGKVTVLTHC 168 > eco:b1095 fabF, cvc, ECK1081, fabJ, JW1081, vtr; 3-oxoacyl-[acyl-carrier-protein] synthase II (EC:2.3.1.41); K09458 3-oxoacyl-[acyl-carrier-protein] synthase II [EC:2.3.1.179] Length=413 Score = 28.1 bits (61), Expect = 7.4, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 12/78 (15%) Query 4 FLNPLASTGPAA--AAGQACMQLGRQAPSIGL--------GGLLGASGTFVGKGIMAAAA 53 ++N ++ PA A QA + +A S L G LLGA+G + I + A Sbjct 300 YVNAHGTSTPAGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAV--ESIYSILA 357 Query 54 DGDKAAPHLVNRDNPEGG 71 D+A P +N DNP+ G Sbjct 358 LRDQAVPPTINLDNPDEG 375 Lambda K H 0.321 0.137 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2042676840 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40