bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_7704_orf1
Length=130
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_072630 small nuclear ribonucleoprotein, putative ; ... 107 1e-23
bbo:BBOV_IV002350 21.m02997; U6 snRNA-associated Sm-like prote... 103 2e-22
tpv:TP03_0418 U6 snRNA-associated Sm-like protein LSm8; K12627... 100 8e-22
mmu:76522 Naa38, 2010003I05Rik, AW214405, Lsm8; N(alpha)-acety... 96.3 2e-20
hsa:51691 NAA38, FLJ33242, LSM8; N(alpha)-acetyltransferase 38... 96.3 2e-20
xla:414679 naa38, MGC82379, lsm8; N(alpha)-acetyltransferase 3... 96.3 2e-20
ath:AT1G65700 small nuclear ribonucleoprotein, putative / snRN... 93.6 1e-19
pfa:MAL8P1.9 U6 snRNA-associated Sm-like protein, putative; K1... 88.6 5e-18
cel:Y73B6BL.32 lsm-8; LSM Sm-like protein family member (lsm-8... 85.1 5e-17
dre:566017 lsm8; LSM8 homolog, U6 small nuclear RNA associated... 77.8 7e-15
cpv:cgd7_5350 hypothetical protein ; K12627 U6 snRNA-associate... 64.7 7e-11
ath:AT3G14080 small nuclear ribonucleoprotein, putative / snRN... 64.3 8e-11
ath:AT1G19120 small nuclear ribonucleoprotein, putative / snRN... 62.8 2e-10
sce:YJL124C LSM1, SPB8; Lsm (Like Sm) protein; forms heterohep... 57.0 2e-08
tgo:TGME49_022290 U6 snRNA-associated Sm-like protein LSm1, pu... 55.8 3e-08
pfa:PF11_0255 conserved Plasmodium protein 55.5 4e-08
bbo:BBOV_III006010 17.m07530; Sm domain containing protein; K1... 53.1 2e-07
sce:YER029C SMB1; Sm B; SmB; K11086 small nuclear ribonucleopr... 53.1 2e-07
dre:445157 lsm1, zgc:101136; LSM1 homolog, U6 small nuclear RN... 50.4 1e-06
xla:100049754 lsm1; LSM1 homolog, U6 small nuclear RNA associa... 48.5 5e-06
xla:735185 hypothetical protein MGC131170; K12620 U6 snRNA-ass... 48.1 6e-06
mmu:67207 Lsm1, 2810025O06Rik, CASM; LSM1 homolog, U6 small nu... 47.8 8e-06
hsa:27257 LSM1, CASM, YJL124C; LSM1 homolog, U6 small nuclear ... 47.8 8e-06
tpv:TP02_0362 small nuclear ribonucleoprotein B; K11086 small ... 46.2 3e-05
cpv:cgd1_2910 hypothetical protein ; K11086 small nuclear ribo... 45.4 4e-05
cpv:cgd5_3710 small nuclear ribonucleoprotein U6 45.1 5e-05
pfa:PF14_0146 ribonucleoprotein, putative; K11086 small nuclea... 44.7 8e-05
mmu:20646 Snrpn, 2410045I01Rik, HCERN3, MGC18604, MGC30325, Pe... 43.1 2e-04
hsa:6638 SNRPN, DKFZp686C0927, DKFZp686M12165, DKFZp761I1912, ... 43.1 2e-04
dre:402966 snrpb, MGC77315, Snrpn, zgc:77315; small nuclear ri... 43.1 2e-04
cel:F40F8.9 lsm-1; LSM Sm-like protein family member (lsm-1); ... 42.7 3e-04
sce:YJR022W LSM8; Lsm (Like Sm) protein; forms heteroheptameri... 42.4 3e-04
mmu:20638 Snrpb, AL024368, AU018828, SM-B, SM11, SMB, SNRNP-B;... 42.4 4e-04
hsa:6628 SNRPB, COD, SNRPB1, Sm-B/B', SmB/B', SmB/SmB', snRNP-... 42.4 4e-04
tgo:TGME49_100280 small nuclear ribonucleoprotein, putative 42.0 5e-04
xla:379853 snrpn, MGC52854; small nuclear ribonucleoparticle-a... 41.6 7e-04
ath:AT5G44500 small nuclear ribonucleoprotein associated prote... 40.8 0.001
ath:AT4G20440 smB; smB (small nuclear ribonucleoprotein associ... 40.8 0.001
cel:W08E3.1 snr-2; Small Nuclear Ribonucleoprotein family memb... 40.8 0.001
xla:734887 snrpb, MGC130840, cod, sm-b/b', smb/b', smb/smb', s... 40.4 0.001
hsa:100133224 hypothetical protein LOC100133224 37.4 0.012
cpv:cgd4_1660 small nuclear ribonucleoprotein ; K11097 small n... 35.0 0.057
cpv:cgd1_2690 hypothetical protein 35.0 0.058
cel:ZK593.7 lsm-7; LSM Sm-like protein family member (lsm-7); ... 34.7 0.069
cel:Y62E10A.12 lsm-3; LSM Sm-like protein family member (lsm-3... 34.3 0.10
ath:AT2G03870 small nuclear ribonucleoprotein, putative / snRN... 34.3 0.11
cel:Y48G1C.9 hypothetical protein 33.9 0.12
sce:YOR159C SME1; Sm E; SmE; K11097 small nuclear ribonucleopr... 33.9 0.14
ath:AT3G11500 small nuclear ribonucleoprotein G, putative / sn... 33.5 0.17
pfa:MAL13P1.253 small nuclear ribonucleoprotein, putative; K11... 33.1 0.25
> tgo:TGME49_072630 small nuclear ribonucleoprotein, putative
; K12627 U6 snRNA-associated Sm-like protein LSm8
Length=96
Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/96 (59%), Positives = 77/96 (80%), Gaps = 0/96 (0%)
Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93
MA LQ+L++ +V ++T DGR+F+GTL FDQSTN++L+KC E++ DA VE + LGLY
Sbjct 1 MAQVLQTLVDQKVEIVTVDGRVFVGTLKGFDQSTNLILDKCEERIYSVDAAVEQIALGLY 60
Query 94 LLRGDNIAVVGQVDEDVEKSIDASGVRAPPLKPIKH 129
L+RGDNIAVVG+VD +V++SI S VRA PLKP+KH
Sbjct 61 LIRGDNIAVVGEVDVEVDESIQLSSVRAAPLKPMKH 96
> bbo:BBOV_IV002350 21.m02997; U6 snRNA-associated Sm-like protein
LSm8; K12627 U6 snRNA-associated Sm-like protein LSm8
Length=94
Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 71/96 (73%), Gaps = 2/96 (2%)
Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93
MA L+ +E +VCV+T DGR+F+G L FDQ TN+VL C E+V + P E +PLG+Y
Sbjct 1 MAPSLEQFIECQVCVVTVDGRVFIGDLKGFDQVTNLVLYNCVERVFRKGVPFEDLPLGIY 60
Query 94 LLRGDNIAVVGQVDEDVEKSIDASGVRAPPLKPIKH 129
L+RGDNIA+VG+VD +V+K+++ G+ A P+KP+ +
Sbjct 61 LIRGDNIALVGEVDMEVDKTLE--GLEAEPIKPVIY 94
> tpv:TP03_0418 U6 snRNA-associated Sm-like protein LSm8; K12627
U6 snRNA-associated Sm-like protein LSm8
Length=94
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 69/96 (71%), Gaps = 2/96 (2%)
Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93
MA L+ +E V V++ DGR+F+G L FDQ TN+VL C E+V H DAPVE + LG+Y
Sbjct 1 MAPILEQFIECSVFVISVDGRVFVGVLKGFDQLTNLVLYNCLERVYHPDAPVEELELGIY 60
Query 94 LLRGDNIAVVGQVDEDVEKSIDASGVRAPPLKPIKH 129
LLRGDNI +VG+VD DV++S+ SG+ A P+ P+ +
Sbjct 61 LLRGDNIVLVGEVDVDVDRSM--SGIEALPINPVIY 94
> mmu:76522 Naa38, 2010003I05Rik, AW214405, Lsm8; N(alpha)-acetyltransferase
38, NatC auxiliary subunit; K12627 U6 snRNA-associated
Sm-like protein LSm8
Length=96
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 65/96 (67%), Gaps = 0/96 (0%)
Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93
M S L++ + V V+T DGR+ +GTL FDQ+ N++L++ E+V VE V LGLY
Sbjct 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query 94 LLRGDNIAVVGQVDEDVEKSIDASGVRAPPLKPIKH 129
++RGDN+AV+G++DE+ + ++D +RA PL + H
Sbjct 61 IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
> hsa:51691 NAA38, FLJ33242, LSM8; N(alpha)-acetyltransferase
38, NatC auxiliary subunit; K12627 U6 snRNA-associated Sm-like
protein LSm8
Length=96
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 65/96 (67%), Gaps = 0/96 (0%)
Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93
M S L++ + V V+T DGR+ +GTL FDQ+ N++L++ E+V VE V LGLY
Sbjct 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query 94 LLRGDNIAVVGQVDEDVEKSIDASGVRAPPLKPIKH 129
++RGDN+AV+G++DE+ + ++D +RA PL + H
Sbjct 61 IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96
> xla:414679 naa38, MGC82379, lsm8; N(alpha)-acetyltransferase
38, NatC auxiliary subunit; K12627 U6 snRNA-associated Sm-like
protein LSm8
Length=96
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 65/94 (69%), Gaps = 0/94 (0%)
Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93
MAS L++ + V V+T DGR+ +GTL FDQ+ N++L++ E+V VE V LGLY
Sbjct 1 MASALENYINRTVAVITADGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60
Query 94 LLRGDNIAVVGQVDEDVEKSIDASGVRAPPLKPI 127
++RGDN+AV+G++DE+ + S+D +RA PL +
Sbjct 61 IVRGDNVAVIGEIDEETDSSLDLGNIRAEPLNSV 94
> ath:AT1G65700 small nuclear ribonucleoprotein, putative / snRNP,
putative / Sm protein, putative; K12627 U6 snRNA-associated
Sm-like protein LSm8
Length=98
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 68/95 (71%), Gaps = 0/95 (0%)
Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLYL 94
+GL++L++ + V+T DGR +G L FDQ+TNI+L++ E+V V+ LGLY+
Sbjct 4 TTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYI 63
Query 95 LRGDNIAVVGQVDEDVEKSIDASGVRAPPLKPIKH 129
+RGDNI V+G++DE+++ S+D S +RA PLKP+ H
Sbjct 64 IRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98
> pfa:MAL8P1.9 U6 snRNA-associated Sm-like protein, putative;
K12627 U6 snRNA-associated Sm-like protein LSm8
Length=95
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 63/93 (67%), Gaps = 2/93 (2%)
Query 37 GLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLYLLR 96
++S LE+ + V+T D R+F G L FDQ+TNI+L C E++ E +E + LG+Y++R
Sbjct 5 NIESYLENEILVITNDSRIFTGKLKGFDQTTNIILGNCHERIYKE--SMEKISLGVYIIR 62
Query 97 GDNIAVVGQVDEDVEKSIDASGVRAPPLKPIKH 129
GD + ++G++DEDV+K+I ++ LKPI H
Sbjct 63 GDTVTLIGEIDEDVDKNILHQKIKPQMLKPIVH 95
> cel:Y73B6BL.32 lsm-8; LSM Sm-like protein family member (lsm-8);
K12627 U6 snRNA-associated Sm-like protein LSm8
Length=98
Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 0/94 (0%)
Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93
M S L + + V V+T DGR+ +G L FDQ N+V+ E+ E V PLGLY
Sbjct 1 MTSTLDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLY 60
Query 94 LLRGDNIAVVGQVDEDVEKSIDASGVRAPPLKPI 127
++RG+N+A++G++DE+++K +D V+A PL PI
Sbjct 61 IIRGENVAIIGEIDEELDKRVDLENVKAAPLAPI 94
> dre:566017 lsm8; LSM8 homolog, U6 small nuclear RNA associated;
K12627 U6 snRNA-associated Sm-like protein LSm8
Length=97
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93
M++ L+S + V ++T DGR+ +GTL FDQ+ N++L++ E+V VE V G
Sbjct 1 MSTALESYIHRTVAIVTSDGRMIVGTLKGFDQAINLILDESHERVFSSSQGVEQVVSGTR 60
Query 94 LL-RGDNIAVVGQVDEDVEKSIDASGVRAPPLKPIKH 129
+ RGDN V+G++DE+ + ++D +RA PL + H
Sbjct 61 IFVRGDNRVVIGEIDEETDSALDFGNIRAEPLNSVVH 97
> cpv:cgd7_5350 hypothetical protein ; K12627 U6 snRNA-associated
Sm-like protein LSm8
Length=99
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 1/83 (1%)
Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHED-APVEIVPLGLY 93
+S L+ + V VLT D ++++G L+ FDQ TNIVL C EK+ ++D VE V +
Sbjct 4 SSTLEQFINKTVSVLTVDNKVYVGNLVGFDQLTNIVLQNCFEKIYNKDLNKVETVSMESL 63
Query 94 LLRGDNIAVVGQVDEDVEKSIDA 116
+LRGD I +VG+ ED+ ++ +
Sbjct 64 VLRGDCIGMVGEGYEDLTQNFEK 86
> ath:AT3G14080 small nuclear ribonucleoprotein, putative / snRNP,
putative / Sm protein, putative; K12620 U6 snRNA-associated
Sm-like protein LSm1
Length=128
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93
+++ L S L+ ++ VL DGR MGTL +FDQ N VL E+V+ + +I PLGLY
Sbjct 11 LSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDI-PLGLY 69
Query 94 LLRGDNIAVVGQVDEDVEK 112
++RG+N+ ++G++D + E+
Sbjct 70 VIRGENVVLIGELDTEREE 88
> ath:AT1G19120 small nuclear ribonucleoprotein, putative / snRNP,
putative / Sm protein, putative
Length=128
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 4/90 (4%)
Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93
++ L + L+ ++ VL DGR MG L +FDQ N VL + E+V+ D +I PLGLY
Sbjct 11 FSTSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDI-PLGLY 69
Query 94 LLRGDNIAVVGQVDEDVEK-SIDASGVRAP 122
++RG+N+ ++G++ DVEK + A V+ P
Sbjct 70 IIRGENVVLIGEL--DVEKEELPAHMVQVP 97
> sce:YJL124C LSM1, SPB8; Lsm (Like Sm) protein; forms heteroheptameric
complex (with Lsm2p, Lsm3p, Lsm4p, Lsm5p, Lsm6p, and
Lsm7p) involved in degradation of cytoplasmic mRNAs; K12620
U6 snRNA-associated Sm-like protein LSm1
Length=172
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 1/80 (1%)
Query 33 TMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVH-EDAPVEIVPLG 91
T + + S ++ ++ VL DGR+ G L FDQ N++L C E++ E+ G
Sbjct 41 TTTAAIVSSVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRG 100
Query 92 LYLLRGDNIAVVGQVDEDVE 111
++++RG+N+ ++G+VD D E
Sbjct 101 IFMIRGENVVMLGEVDIDKE 120
> tgo:TGME49_022290 U6 snRNA-associated Sm-like protein LSm1,
putative
Length=335
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 11/106 (10%)
Query 21 SAFGCHCTSQLPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVH 80
S G S +P + L+ L+ ++ V+ DGR +G L FDQ N+VL +++V
Sbjct 205 SGEGSPRNSGMPNWITALEEELDKKLLVVLRDGRKLIGYLRTFDQFGNLVLEGTVQRMVV 264
Query 81 EDAPVEIVPLGLYLLRGDNIAVVGQVDEDVEKSIDASGVRAPPLKP 126
++A ++ LG ++RGDN+ + G VD+ RA PL+P
Sbjct 265 DNAYADLY-LGCMIVRGDNMILFGAVDDS----------RASPLEP 299
> pfa:PF11_0255 conserved Plasmodium protein
Length=147
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query 29 SQLPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEK-VVHEDAPVEI 87
S +P S + ++ + + + D +L++G L +DQ N+ L C EK +V E
Sbjct 4 SSMPLWLSSFEEEIDTYIFISSRDNKLYLGILRTYDQHGNVFLTHCVEKIIVPEKNYFSD 63
Query 88 VPLGLYLLRGDNIAVVGQVDED 109
V +G ++RGDNIA G VDE+
Sbjct 64 VYVGNLIIRGDNIAYFGSVDEE 85
> bbo:BBOV_III006010 17.m07530; Sm domain containing protein;
K11086 small nuclear ribonucleoprotein B and B'
Length=159
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%)
Query 38 LQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE-KVVHEDAP----VEIV-PLG 91
+Q L++RV V DGR F+GT IAFD+ N+VL C E ++ P VE+ LG
Sbjct 8 MQQWLQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQKVELKRTLG 67
Query 92 LYLLRGDNI 100
+LRG+NI
Sbjct 68 FIMLRGENI 76
> sce:YER029C SMB1; Sm B; SmB; K11086 small nuclear ribonucleoprotein
B and B'
Length=196
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 18/84 (21%)
Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHE------------- 81
+S L +L+++++ VLT DGR+++G L+AFD+ N+VLN+C E+ V +
Sbjct 9 SSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLRPRKDSK 68
Query 82 -----DAPVEIVPLGLYLLRGDNI 100
+ VE LGL +LRG+ I
Sbjct 69 DGTTLNIKVEKRVLGLTILRGEQI 92
> dre:445157 lsm1, zgc:101136; LSM1 homolog, U6 small nuclear
RNA associated (S. cerevisiae); K12620 U6 snRNA-associated Sm-like
protein LSm1
Length=133
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 2/81 (2%)
Query 31 LPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPL 90
+P AS ++ + + + VL DGR +G L + DQ N+VL++ E++ H +P
Sbjct 4 MPGTASLIEDI-DKKHLVLLRDGRTLIGILRSIDQFANLVLHQTVERI-HVGKKFGDIPR 61
Query 91 GLYLLRGDNIAVVGQVDEDVE 111
G++++RG+N+ ++G+VD D E
Sbjct 62 GIFVVRGENVVLLGEVDLDKE 82
> xla:100049754 lsm1; LSM1 homolog, U6 small nuclear RNA associated;
K12620 U6 snRNA-associated Sm-like protein LSm1
Length=133
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query 31 LPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPL 90
+P AS ++ + + + VL DGR +G L + DQ N+VL++ E+ +H +P
Sbjct 4 MPGTASLIEDI-DKKHLVLLRDGRTLIGYLRSIDQFANLVLHQTVER-IHVGKKYGDIPR 61
Query 91 GLYLLRGDNIAVVGQVDEDVEKSIDA 116
G++++RG+N+ ++G++ D+EK D
Sbjct 62 GIFVVRGENVVLLGEI--DLEKESDT 85
> xla:735185 hypothetical protein MGC131170; K12620 U6 snRNA-associated
Sm-like protein LSm1
Length=133
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query 31 LPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPL 90
+P AS ++ + + + VL DGR +G L + DQ N+VL++ E+ +H +P
Sbjct 4 MPGTASLIEDI-DKKHLVLLRDGRTLIGYLRSIDQFANLVLHQTVER-IHVGKKYGDIPR 61
Query 91 GLYLLRGDNIAVVGQVDEDVEKSIDA 116
G++++RG+N+ ++G++ D+EK D
Sbjct 62 GIFVVRGENVVLLGEI--DLEKENDT 85
> mmu:67207 Lsm1, 2810025O06Rik, CASM; LSM1 homolog, U6 small
nuclear RNA associated (S. cerevisiae); K12620 U6 snRNA-associated
Sm-like protein LSm1
Length=133
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query 31 LPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPL 90
+P AS ++ + + + VL DGR +G L + DQ N+VL++ E+ +H +P
Sbjct 4 MPGTASLIEDI-DKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVER-IHVGKKYGDIPR 61
Query 91 GLYLLRGDNIAVVGQVDEDVEKSIDA 116
G++++RG+N+ ++G++ D+EK D
Sbjct 62 GIFVVRGENVVLLGEI--DLEKESDT 85
> hsa:27257 LSM1, CASM, YJL124C; LSM1 homolog, U6 small nuclear
RNA associated (S. cerevisiae); K12620 U6 snRNA-associated
Sm-like protein LSm1
Length=133
Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query 31 LPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPL 90
+P AS ++ + + + VL DGR +G L + DQ N+VL++ E+ +H +P
Sbjct 4 MPGTASLIEDI-DKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVER-IHVGKKYGDIPR 61
Query 91 GLYLLRGDNIAVVGQVDEDVEKSIDA 116
G++++RG+N+ ++G++ D+EK D
Sbjct 62 GIFVVRGENVVLLGEI--DLEKESDT 85
> tpv:TP02_0362 small nuclear ribonucleoprotein B; K11086 small
nuclear ribonucleoprotein B and B'
Length=155
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query 31 LPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE---KVVHEDAPVEI 87
+P + +Q L++ V V D R F+GTL+A+D+ N+VL+ C E + + E+
Sbjct 1 MPGKNTRMQHWLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNRTEV 60
Query 88 V-PLGLYLLRGDNI 100
LG LLRG+NI
Sbjct 61 KRTLGFVLLRGENI 74
> cpv:cgd1_2910 hypothetical protein ; K11086 small nuclear ribonucleoprotein
B and B'
Length=139
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query 38 LQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE--KVVHEDAPVEIV-PLGLYL 94
+Q + +R+ V D R+ +G L+AFD+ N+VL+ C E +V + E+ LGL +
Sbjct 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEESKELKRSLGLIM 60
Query 95 LRGDNI 100
LRG+NI
Sbjct 61 LRGENI 66
> cpv:cgd5_3710 small nuclear ribonucleoprotein U6
Length=160
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query 38 LQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLYLLRG 97
L+ L+ + V+ DGR F G +FDQ ++ L + E + D EI G + RG
Sbjct 46 LEEDLDKEIYVVLRDGRQFTGIFRSFDQYGSLCLERSFEVFSNNDCYNEIYQ-GCMIFRG 104
Query 98 DNIAVVGQVDEDVEKSIDASGVRAPPLKPIKH 129
DN+ + G +D+++ KS +A + + IK
Sbjct 105 DNLMLCGLIDQNI-KSYNAKKIPLADILKIKQ 135
> pfa:PF14_0146 ribonucleoprotein, putative; K11086 small nuclear
ribonucleoprotein B and B'
Length=201
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 4/69 (5%)
Query 36 SGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE--KVVHEDAPVEIVP--LG 91
S L++ L++RV V D R F+GT +++D+ NIVL E KV ++ ++ + +G
Sbjct 5 SRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSLKEIKRVVG 64
Query 92 LYLLRGDNI 100
L L+RG+NI
Sbjct 65 LILIRGENI 73
> mmu:20646 Snrpn, 2410045I01Rik, HCERN3, MGC18604, MGC30325,
Peg4, SMN; small nuclear ribonucleoprotein N; K11100 small nuclear
ribonucleoprotein N
Length=240
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE------KVVHEDAPVEIV 88
+S + +++R+ + DGR+F+GT AFD+ N++L C E K + E
Sbjct 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query 89 PLGLYLLRGDNI 100
LGL LLRG+N+
Sbjct 66 VLGLVLLRGENL 77
> hsa:6638 SNRPN, DKFZp686C0927, DKFZp686M12165, DKFZp761I1912,
DKFZp762N022, FLJ33569, FLJ36996, FLJ39265, HCERN3, MGC29886,
PWCR, RT-LI, SM-D, SMN, SNRNP-N, SNURF-SNRPN; small nuclear
ribonucleoprotein polypeptide N; K11100 small nuclear ribonucleoprotein
N
Length=240
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE------KVVHEDAPVEIV 88
+S + +++R+ + DGR+F+GT AFD+ N++L C E K + E
Sbjct 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65
Query 89 PLGLYLLRGDNI 100
LGL LLRG+N+
Sbjct 66 VLGLVLLRGENL 77
> dre:402966 snrpb, MGC77315, Snrpn, zgc:77315; small nuclear
ribonucleoprotein polypeptides B and B1; K11086 small nuclear
ribonucleoprotein B and B'
Length=239
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE------KVVHEDAPVEIV 88
+S + +++R+ + DGR+F+GT AFD+ N++L C E K + E
Sbjct 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKR 65
Query 89 PLGLYLLRGDNI 100
LGL LLRG+N+
Sbjct 66 VLGLVLLRGENL 77
> cel:F40F8.9 lsm-1; LSM Sm-like protein family member (lsm-1);
K12620 U6 snRNA-associated Sm-like protein LSm1
Length=125
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLYL 94
A L L+ ++ V+ DGR +G L + DQ N++L E+ E E G L
Sbjct 11 AISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCE-TGQGFML 69
Query 95 LRGDNIAVVGQVDEDVE 111
+RG+N+ + G++D+ +E
Sbjct 70 IRGENVELAGEIDDTIE 86
> sce:YJR022W LSM8; Lsm (Like Sm) protein; forms heteroheptameric
complex (with Lsm2p, Lsm3p, Lsm4p, Lsm5p, Lsm6p, and Lsm7p)
that is part of spliceosomal U6 snRNP and is also implicated
in processing of pre-tRNA, pre-snoRNA, and pre-rRNA; K12627
U6 snRNA-associated Sm-like protein LSm8
Length=109
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93
M++ L+ L RV ++ DG + +L FD++TN+ + ++ E
Sbjct 1 MSATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRISKE------FICKAQ 54
Query 94 LLRGDNIAVVGQVDEDVEKS---IDASGVRAPPLKPIKHS 130
LLRG IA+VG +D + + S ID V P LK K+
Sbjct 55 LLRGSEIALVGLIDAENDDSLAPIDEKKV--PMLKDTKNK 92
> mmu:20638 Snrpb, AL024368, AU018828, SM-B, SM11, SMB, SNRNP-B;
small nuclear ribonucleoprotein B; K11086 small nuclear ribonucleoprotein
B and B'
Length=231
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE------KVVHEDAPVEIV 88
+S + +++R+ + DGR+F+GT AFD+ N++L C E K + E
Sbjct 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query 89 PLGLYLLRGDNI 100
LGL LLRG+N+
Sbjct 66 VLGLVLLRGENL 77
> hsa:6628 SNRPB, COD, SNRPB1, Sm-B/B', SmB/B', SmB/SmB', snRNP-B;
small nuclear ribonucleoprotein polypeptides B and B1;
K11086 small nuclear ribonucleoprotein B and B'
Length=231
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE------KVVHEDAPVEIV 88
+S + +++R+ + DGR+F+GT AFD+ N++L C E K + E
Sbjct 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65
Query 89 PLGLYLLRGDNI 100
LGL LLRG+N+
Sbjct 66 VLGLVLLRGENL 77
> tgo:TGME49_100280 small nuclear ribonucleoprotein, putative
Length=236
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 0/48 (0%)
Query 29 SQLPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE 76
S++P+ + LQ + +R+ V D R+ +G+L+AFD+ NIVL E
Sbjct 40 SKMPSKNARLQQWINYRIRVCLQDSRMLVGSLLAFDRHMNIVLADAEE 87
> xla:379853 snrpn, MGC52854; small nuclear ribonucleoparticle-associated
protein (snRNP) mRNA, clone Sm51; K11086 small nuclear
ribonucleoprotein B and B'
Length=236
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 7/69 (10%)
Query 38 LQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE------KVVHEDAPVEIVPLG 91
LQ + C+L DGR+F+GT AFD+ N++L C E K + E LG
Sbjct 10 LQHIDFRMRCILQ-DGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLG 68
Query 92 LYLLRGDNI 100
L LLRG+N+
Sbjct 69 LVLLRGENL 77
> ath:AT5G44500 small nuclear ribonucleoprotein associated protein
B, putative / snRNP-B, putative / Sm protein B, putative;
K11086 small nuclear ribonucleoprotein B and B'
Length=254
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE----------KVVHEDAP 84
+S + + +R+ V DGR +G +AFD+ N+VL C E K +E+
Sbjct 6 SSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEER- 64
Query 85 VEIVPLGLYLLRGDNI 100
E LGL LLRG+ +
Sbjct 65 EERRTLGLVLLRGEEV 80
> ath:AT4G20440 smB; smB (small nuclear ribonucleoprotein associated
protein B); K11086 small nuclear ribonucleoprotein B
and B'
Length=257
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 10/75 (13%)
Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE---------KVVHEDAPV 85
+S + + +R+ V DGR +G +AFD+ N+VL C E K ++E+
Sbjct 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEERED 65
Query 86 EIVPLGLYLLRGDNI 100
LGL LLRG+ +
Sbjct 66 RRT-LGLVLLRGEEV 79
> cel:W08E3.1 snr-2; Small Nuclear Ribonucleoprotein family member
(snr-2); K11086 small nuclear ribonucleoprotein B and B'
Length=160
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query 38 LQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE------KVVHEDAPVEIVPLG 91
+ + L +R+ ++ DGR F+G AFD+ NI+L +C E K + E LG
Sbjct 9 MMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILG 68
Query 92 LYLLRGDNI 100
L L+RG++I
Sbjct 69 LVLVRGEHI 77
> xla:734887 snrpb, MGC130840, cod, sm-b/b', smb/b', smb/smb',
snrnp-b, snrpb1; small nuclear ribonucleoprotein polypeptides
B and B1; K11086 small nuclear ribonucleoprotein B and B'
Length=234
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query 38 LQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE------KVVHEDAPVEIVPLG 91
LQ + C L DGR+F+GT AFD+ N++L C E K + E LG
Sbjct 10 LQHIDFRMRCTLQ-DGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLG 68
Query 92 LYLLRGDNI 100
L LLRG+N+
Sbjct 69 LVLLRGENL 77
> hsa:100133224 hypothetical protein LOC100133224
Length=202
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query 27 CTSQLPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE------KVVH 80
S+L + LQ +++R+ + +G +F G AFD+ N++L C E K V
Sbjct 27 WQSRLWARVARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVK 86
Query 81 EDAPVEIVPLGLYLLRGDNI 100
+ E GL LL G+N+
Sbjct 87 QPELEEKHFWGLVLLHGENL 106
> cpv:cgd4_1660 small nuclear ribonucleoprotein ; K11097 small
nuclear ribonucleoprotein E
Length=92
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 3/63 (4%)
Query 43 EHRVCVLTFDGR--LFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLYLLRGDNI 100
+ RV + +D + + G + FD+ NIVL++ +E ++ E +G LLRG+NI
Sbjct 27 KQRVQIWLYDHKNLVLEGVIQGFDEYMNIVLDQASEVYTKKEVRRE-TSVGQLLLRGENI 85
Query 101 AVV 103
+++
Sbjct 86 SLI 88
> cpv:cgd1_2690 hypothetical protein
Length=67
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query 56 FMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLYLLRGDNIAVVGQVDEDVE 111
+ GTL++FD+ NI+LN C E + + LG +R +N+ + + +E E
Sbjct 3 YKGTLVSFDEYMNILLNDCEEWIDNTKKG----TLGKVFIRCNNVLYISRAEESKE 54
> cel:ZK593.7 lsm-7; LSM Sm-like protein family member (lsm-7);
K12626 U6 snRNA-associated Sm-like protein LSm7
Length=104
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query 38 LQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPV----EIVPLGLY 93
L L+ + V GR G L FDQ N+VL+ C E + P E LGL
Sbjct 16 LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLI 75
Query 94 LLRGDNIAVVGQVD 107
+ RG I VV D
Sbjct 76 VARGTAITVVSPAD 89
> cel:Y62E10A.12 lsm-3; LSM Sm-like protein family member (lsm-3);
K12622 U6 snRNA-associated Sm-like protein LSm3
Length=102
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query 42 LEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKV----VHEDAPVEIVP-----LGL 92
L+ RV V + R G L AFDQ N+VL++ E + V ED EI + +
Sbjct 25 LDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDTFEEIYKQTKRVVPM 84
Query 93 YLLRGDNIAVVG 104
+RGD++ +V
Sbjct 85 LFVRGDSVILVS 96
> ath:AT2G03870 small nuclear ribonucleoprotein, putative / snRNP,
putative / Sm protein, putative; K12626 U6 snRNA-associated
Sm-like protein LSm7
Length=99
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query 53 GRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVP----LGLYLLRGDNIAVVGQVD 107
GR GTL +DQ N+VL++ E V D P++ LGL + RG + +V D
Sbjct 26 GRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTAVMLVSPTD 84
> cel:Y48G1C.9 hypothetical protein
Length=103
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 0/33 (0%)
Query 45 RVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEK 77
R + DGR GT+IA D+ N+V NK E+
Sbjct 34 RYEIRMTDGRYIRGTMIATDKDANMVFNKADER 66
> sce:YOR159C SME1; Sm E; SmE; K11097 small nuclear ribonucleoprotein
E
Length=94
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query 58 GTLIAFDQSTNIVLNKCAEKVVHEDAPVEIV----PLGLYLLRGDNIAVVGQVD 107
G ++ FD+ N+V+++ E V+ E V PLG LL+GDNI ++ D
Sbjct 41 GKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLITSAD 94
> ath:AT3G11500 small nuclear ribonucleoprotein G, putative /
snRNP-G, putative / Sm protein G, putative; K11099 small nuclear
ribonucleoprotein G
Length=79
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query 38 LQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLYLLRG 97
L+ ++ ++ + R+ +GTL FDQ N+V++ E V+ D +I G+ ++RG
Sbjct 10 LKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE--VNGDDKTDI---GMVVIRG 64
Query 98 DNIAVV 103
++I V
Sbjct 65 NSIVTV 70
> pfa:MAL13P1.253 small nuclear ribonucleoprotein, putative; K11097
small nuclear ribonucleoprotein E
Length=93
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query 58 GTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLYLLRGDNIAVVGQVDED 109
G ++ FD+ N+VL++ E V ++ E LG LL+GD I ++ +V +
Sbjct 43 GIILGFDEYMNMVLDQTKEISVKKNTKKE---LGKILLKGDTITLIMEVKNE 91
Lambda K H
0.320 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2039374804
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40