bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_7704_orf1 Length=130 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_072630 small nuclear ribonucleoprotein, putative ; ... 107 1e-23 bbo:BBOV_IV002350 21.m02997; U6 snRNA-associated Sm-like prote... 103 2e-22 tpv:TP03_0418 U6 snRNA-associated Sm-like protein LSm8; K12627... 100 8e-22 mmu:76522 Naa38, 2010003I05Rik, AW214405, Lsm8; N(alpha)-acety... 96.3 2e-20 hsa:51691 NAA38, FLJ33242, LSM8; N(alpha)-acetyltransferase 38... 96.3 2e-20 xla:414679 naa38, MGC82379, lsm8; N(alpha)-acetyltransferase 3... 96.3 2e-20 ath:AT1G65700 small nuclear ribonucleoprotein, putative / snRN... 93.6 1e-19 pfa:MAL8P1.9 U6 snRNA-associated Sm-like protein, putative; K1... 88.6 5e-18 cel:Y73B6BL.32 lsm-8; LSM Sm-like protein family member (lsm-8... 85.1 5e-17 dre:566017 lsm8; LSM8 homolog, U6 small nuclear RNA associated... 77.8 7e-15 cpv:cgd7_5350 hypothetical protein ; K12627 U6 snRNA-associate... 64.7 7e-11 ath:AT3G14080 small nuclear ribonucleoprotein, putative / snRN... 64.3 8e-11 ath:AT1G19120 small nuclear ribonucleoprotein, putative / snRN... 62.8 2e-10 sce:YJL124C LSM1, SPB8; Lsm (Like Sm) protein; forms heterohep... 57.0 2e-08 tgo:TGME49_022290 U6 snRNA-associated Sm-like protein LSm1, pu... 55.8 3e-08 pfa:PF11_0255 conserved Plasmodium protein 55.5 4e-08 bbo:BBOV_III006010 17.m07530; Sm domain containing protein; K1... 53.1 2e-07 sce:YER029C SMB1; Sm B; SmB; K11086 small nuclear ribonucleopr... 53.1 2e-07 dre:445157 lsm1, zgc:101136; LSM1 homolog, U6 small nuclear RN... 50.4 1e-06 xla:100049754 lsm1; LSM1 homolog, U6 small nuclear RNA associa... 48.5 5e-06 xla:735185 hypothetical protein MGC131170; K12620 U6 snRNA-ass... 48.1 6e-06 mmu:67207 Lsm1, 2810025O06Rik, CASM; LSM1 homolog, U6 small nu... 47.8 8e-06 hsa:27257 LSM1, CASM, YJL124C; LSM1 homolog, U6 small nuclear ... 47.8 8e-06 tpv:TP02_0362 small nuclear ribonucleoprotein B; K11086 small ... 46.2 3e-05 cpv:cgd1_2910 hypothetical protein ; K11086 small nuclear ribo... 45.4 4e-05 cpv:cgd5_3710 small nuclear ribonucleoprotein U6 45.1 5e-05 pfa:PF14_0146 ribonucleoprotein, putative; K11086 small nuclea... 44.7 8e-05 mmu:20646 Snrpn, 2410045I01Rik, HCERN3, MGC18604, MGC30325, Pe... 43.1 2e-04 hsa:6638 SNRPN, DKFZp686C0927, DKFZp686M12165, DKFZp761I1912, ... 43.1 2e-04 dre:402966 snrpb, MGC77315, Snrpn, zgc:77315; small nuclear ri... 43.1 2e-04 cel:F40F8.9 lsm-1; LSM Sm-like protein family member (lsm-1); ... 42.7 3e-04 sce:YJR022W LSM8; Lsm (Like Sm) protein; forms heteroheptameri... 42.4 3e-04 mmu:20638 Snrpb, AL024368, AU018828, SM-B, SM11, SMB, SNRNP-B;... 42.4 4e-04 hsa:6628 SNRPB, COD, SNRPB1, Sm-B/B', SmB/B', SmB/SmB', snRNP-... 42.4 4e-04 tgo:TGME49_100280 small nuclear ribonucleoprotein, putative 42.0 5e-04 xla:379853 snrpn, MGC52854; small nuclear ribonucleoparticle-a... 41.6 7e-04 ath:AT5G44500 small nuclear ribonucleoprotein associated prote... 40.8 0.001 ath:AT4G20440 smB; smB (small nuclear ribonucleoprotein associ... 40.8 0.001 cel:W08E3.1 snr-2; Small Nuclear Ribonucleoprotein family memb... 40.8 0.001 xla:734887 snrpb, MGC130840, cod, sm-b/b', smb/b', smb/smb', s... 40.4 0.001 hsa:100133224 hypothetical protein LOC100133224 37.4 0.012 cpv:cgd4_1660 small nuclear ribonucleoprotein ; K11097 small n... 35.0 0.057 cpv:cgd1_2690 hypothetical protein 35.0 0.058 cel:ZK593.7 lsm-7; LSM Sm-like protein family member (lsm-7); ... 34.7 0.069 cel:Y62E10A.12 lsm-3; LSM Sm-like protein family member (lsm-3... 34.3 0.10 ath:AT2G03870 small nuclear ribonucleoprotein, putative / snRN... 34.3 0.11 cel:Y48G1C.9 hypothetical protein 33.9 0.12 sce:YOR159C SME1; Sm E; SmE; K11097 small nuclear ribonucleopr... 33.9 0.14 ath:AT3G11500 small nuclear ribonucleoprotein G, putative / sn... 33.5 0.17 pfa:MAL13P1.253 small nuclear ribonucleoprotein, putative; K11... 33.1 0.25 > tgo:TGME49_072630 small nuclear ribonucleoprotein, putative ; K12627 U6 snRNA-associated Sm-like protein LSm8 Length=96 Score = 107 bits (266), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 57/96 (59%), Positives = 77/96 (80%), Gaps = 0/96 (0%) Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93 MA LQ+L++ +V ++T DGR+F+GTL FDQSTN++L+KC E++ DA VE + LGLY Sbjct 1 MAQVLQTLVDQKVEIVTVDGRVFVGTLKGFDQSTNLILDKCEERIYSVDAAVEQIALGLY 60 Query 94 LLRGDNIAVVGQVDEDVEKSIDASGVRAPPLKPIKH 129 L+RGDNIAVVG+VD +V++SI S VRA PLKP+KH Sbjct 61 LIRGDNIAVVGEVDVEVDESIQLSSVRAAPLKPMKH 96 > bbo:BBOV_IV002350 21.m02997; U6 snRNA-associated Sm-like protein LSm8; K12627 U6 snRNA-associated Sm-like protein LSm8 Length=94 Score = 103 bits (256), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 48/96 (50%), Positives = 71/96 (73%), Gaps = 2/96 (2%) Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93 MA L+ +E +VCV+T DGR+F+G L FDQ TN+VL C E+V + P E +PLG+Y Sbjct 1 MAPSLEQFIECQVCVVTVDGRVFIGDLKGFDQVTNLVLYNCVERVFRKGVPFEDLPLGIY 60 Query 94 LLRGDNIAVVGQVDEDVEKSIDASGVRAPPLKPIKH 129 L+RGDNIA+VG+VD +V+K+++ G+ A P+KP+ + Sbjct 61 LIRGDNIALVGEVDMEVDKTLE--GLEAEPIKPVIY 94 > tpv:TP03_0418 U6 snRNA-associated Sm-like protein LSm8; K12627 U6 snRNA-associated Sm-like protein LSm8 Length=94 Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 50/96 (52%), Positives = 69/96 (71%), Gaps = 2/96 (2%) Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93 MA L+ +E V V++ DGR+F+G L FDQ TN+VL C E+V H DAPVE + LG+Y Sbjct 1 MAPILEQFIECSVFVISVDGRVFVGVLKGFDQLTNLVLYNCLERVYHPDAPVEELELGIY 60 Query 94 LLRGDNIAVVGQVDEDVEKSIDASGVRAPPLKPIKH 129 LLRGDNI +VG+VD DV++S+ SG+ A P+ P+ + Sbjct 61 LLRGDNIVLVGEVDVDVDRSM--SGIEALPINPVIY 94 > mmu:76522 Naa38, 2010003I05Rik, AW214405, Lsm8; N(alpha)-acetyltransferase 38, NatC auxiliary subunit; K12627 U6 snRNA-associated Sm-like protein LSm8 Length=96 Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 41/96 (42%), Positives = 65/96 (67%), Gaps = 0/96 (0%) Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93 M S L++ + V V+T DGR+ +GTL FDQ+ N++L++ E+V VE V LGLY Sbjct 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60 Query 94 LLRGDNIAVVGQVDEDVEKSIDASGVRAPPLKPIKH 129 ++RGDN+AV+G++DE+ + ++D +RA PL + H Sbjct 61 IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96 > hsa:51691 NAA38, FLJ33242, LSM8; N(alpha)-acetyltransferase 38, NatC auxiliary subunit; K12627 U6 snRNA-associated Sm-like protein LSm8 Length=96 Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 41/96 (42%), Positives = 65/96 (67%), Gaps = 0/96 (0%) Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93 M S L++ + V V+T DGR+ +GTL FDQ+ N++L++ E+V VE V LGLY Sbjct 1 MTSALENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60 Query 94 LLRGDNIAVVGQVDEDVEKSIDASGVRAPPLKPIKH 129 ++RGDN+AV+G++DE+ + ++D +RA PL + H Sbjct 61 IVRGDNVAVIGEIDEETDSALDLGNIRAEPLNSVAH 96 > xla:414679 naa38, MGC82379, lsm8; N(alpha)-acetyltransferase 38, NatC auxiliary subunit; K12627 U6 snRNA-associated Sm-like protein LSm8 Length=96 Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 42/94 (44%), Positives = 65/94 (69%), Gaps = 0/94 (0%) Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93 MAS L++ + V V+T DGR+ +GTL FDQ+ N++L++ E+V VE V LGLY Sbjct 1 MASALENYINRTVAVITADGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLY 60 Query 94 LLRGDNIAVVGQVDEDVEKSIDASGVRAPPLKPI 127 ++RGDN+AV+G++DE+ + S+D +RA PL + Sbjct 61 IVRGDNVAVIGEIDEETDSSLDLGNIRAEPLNSV 94 > ath:AT1G65700 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; K12627 U6 snRNA-associated Sm-like protein LSm8 Length=98 Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 43/95 (45%), Positives = 68/95 (71%), Gaps = 0/95 (0%) Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLYL 94 +GL++L++ + V+T DGR +G L FDQ+TNI+L++ E+V V+ LGLY+ Sbjct 4 TTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLGLYI 63 Query 95 LRGDNIAVVGQVDEDVEKSIDASGVRAPPLKPIKH 129 +RGDNI V+G++DE+++ S+D S +RA PLKP+ H Sbjct 64 IRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH 98 > pfa:MAL8P1.9 U6 snRNA-associated Sm-like protein, putative; K12627 U6 snRNA-associated Sm-like protein LSm8 Length=95 Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 39/93 (41%), Positives = 63/93 (67%), Gaps = 2/93 (2%) Query 37 GLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLYLLR 96 ++S LE+ + V+T D R+F G L FDQ+TNI+L C E++ E +E + LG+Y++R Sbjct 5 NIESYLENEILVITNDSRIFTGKLKGFDQTTNIILGNCHERIYKE--SMEKISLGVYIIR 62 Query 97 GDNIAVVGQVDEDVEKSIDASGVRAPPLKPIKH 129 GD + ++G++DEDV+K+I ++ LKPI H Sbjct 63 GDTVTLIGEIDEDVDKNILHQKIKPQMLKPIVH 95 > cel:Y73B6BL.32 lsm-8; LSM Sm-like protein family member (lsm-8); K12627 U6 snRNA-associated Sm-like protein LSm8 Length=98 Score = 85.1 bits (209), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 39/94 (41%), Positives = 60/94 (63%), Gaps = 0/94 (0%) Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93 M S L + + V V+T DGR+ +G L FDQ N+V+ E+ E V PLGLY Sbjct 1 MTSTLDAYMNRMVNVVTGDGRVIVGLLKGFDQLINLVIEDAHERSYSETEGVLTTPLGLY 60 Query 94 LLRGDNIAVVGQVDEDVEKSIDASGVRAPPLKPI 127 ++RG+N+A++G++DE+++K +D V+A PL PI Sbjct 61 IIRGENVAIIGEIDEELDKRVDLENVKAAPLAPI 94 > dre:566017 lsm8; LSM8 homolog, U6 small nuclear RNA associated; K12627 U6 snRNA-associated Sm-like protein LSm8 Length=97 Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 36/97 (37%), Positives = 60/97 (61%), Gaps = 1/97 (1%) Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93 M++ L+S + V ++T DGR+ +GTL FDQ+ N++L++ E+V VE V G Sbjct 1 MSTALESYIHRTVAIVTSDGRMIVGTLKGFDQAINLILDESHERVFSSSQGVEQVVSGTR 60 Query 94 LL-RGDNIAVVGQVDEDVEKSIDASGVRAPPLKPIKH 129 + RGDN V+G++DE+ + ++D +RA PL + H Sbjct 61 IFVRGDNRVVIGEIDEETDSALDFGNIRAEPLNSVVH 97 > cpv:cgd7_5350 hypothetical protein ; K12627 U6 snRNA-associated Sm-like protein LSm8 Length=99 Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 1/83 (1%) Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHED-APVEIVPLGLY 93 +S L+ + V VLT D ++++G L+ FDQ TNIVL C EK+ ++D VE V + Sbjct 4 SSTLEQFINKTVSVLTVDNKVYVGNLVGFDQLTNIVLQNCFEKIYNKDLNKVETVSMESL 63 Query 94 LLRGDNIAVVGQVDEDVEKSIDA 116 +LRGD I +VG+ ED+ ++ + Sbjct 64 VLRGDCIGMVGEGYEDLTQNFEK 86 > ath:AT3G14080 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; K12620 U6 snRNA-associated Sm-like protein LSm1 Length=128 Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 32/79 (40%), Positives = 53/79 (67%), Gaps = 1/79 (1%) Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93 +++ L S L+ ++ VL DGR MGTL +FDQ N VL E+V+ + +I PLGLY Sbjct 11 LSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDI-PLGLY 69 Query 94 LLRGDNIAVVGQVDEDVEK 112 ++RG+N+ ++G++D + E+ Sbjct 70 VIRGENVVLIGELDTEREE 88 > ath:AT1G19120 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative Length=128 Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 36/90 (40%), Positives = 57/90 (63%), Gaps = 4/90 (4%) Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93 ++ L + L+ ++ VL DGR MG L +FDQ N VL + E+V+ D +I PLGLY Sbjct 11 FSTSLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCDI-PLGLY 69 Query 94 LLRGDNIAVVGQVDEDVEK-SIDASGVRAP 122 ++RG+N+ ++G++ DVEK + A V+ P Sbjct 70 IIRGENVVLIGEL--DVEKEELPAHMVQVP 97 > sce:YJL124C LSM1, SPB8; Lsm (Like Sm) protein; forms heteroheptameric complex (with Lsm2p, Lsm3p, Lsm4p, Lsm5p, Lsm6p, and Lsm7p) involved in degradation of cytoplasmic mRNAs; K12620 U6 snRNA-associated Sm-like protein LSm1 Length=172 Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 26/80 (32%), Positives = 47/80 (58%), Gaps = 1/80 (1%) Query 33 TMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVH-EDAPVEIVPLG 91 T + + S ++ ++ VL DGR+ G L FDQ N++L C E++ E+ G Sbjct 41 TTTAAIVSSVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRG 100 Query 92 LYLLRGDNIAVVGQVDEDVE 111 ++++RG+N+ ++G+VD D E Sbjct 101 IFMIRGENVVMLGEVDIDKE 120 > tgo:TGME49_022290 U6 snRNA-associated Sm-like protein LSm1, putative Length=335 Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 11/106 (10%) Query 21 SAFGCHCTSQLPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVH 80 S G S +P + L+ L+ ++ V+ DGR +G L FDQ N+VL +++V Sbjct 205 SGEGSPRNSGMPNWITALEEELDKKLLVVLRDGRKLIGYLRTFDQFGNLVLEGTVQRMVV 264 Query 81 EDAPVEIVPLGLYLLRGDNIAVVGQVDEDVEKSIDASGVRAPPLKP 126 ++A ++ LG ++RGDN+ + G VD+ RA PL+P Sbjct 265 DNAYADLY-LGCMIVRGDNMILFGAVDDS----------RASPLEP 299 > pfa:PF11_0255 conserved Plasmodium protein Length=147 Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Query 29 SQLPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEK-VVHEDAPVEI 87 S +P S + ++ + + + D +L++G L +DQ N+ L C EK +V E Sbjct 4 SSMPLWLSSFEEEIDTYIFISSRDNKLYLGILRTYDQHGNVFLTHCVEKIIVPEKNYFSD 63 Query 88 VPLGLYLLRGDNIAVVGQVDED 109 V +G ++RGDNIA G VDE+ Sbjct 64 VYVGNLIIRGDNIAYFGSVDEE 85 > bbo:BBOV_III006010 17.m07530; Sm domain containing protein; K11086 small nuclear ribonucleoprotein B and B' Length=159 Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 6/69 (8%) Query 38 LQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE-KVVHEDAP----VEIV-PLG 91 +Q L++RV V DGR F+GT IAFD+ N+VL C E ++ P VE+ LG Sbjct 8 MQQWLQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQKVELKRTLG 67 Query 92 LYLLRGDNI 100 +LRG+NI Sbjct 68 FIMLRGENI 76 > sce:YER029C SMB1; Sm B; SmB; K11086 small nuclear ribonucleoprotein B and B' Length=196 Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 18/84 (21%) Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHE------------- 81 +S L +L+++++ VLT DGR+++G L+AFD+ N+VLN+C E+ V + Sbjct 9 SSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEERVPKTQLDKLRPRKDSK 68 Query 82 -----DAPVEIVPLGLYLLRGDNI 100 + VE LGL +LRG+ I Sbjct 69 DGTTLNIKVEKRVLGLTILRGEQI 92 > dre:445157 lsm1, zgc:101136; LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae); K12620 U6 snRNA-associated Sm-like protein LSm1 Length=133 Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 27/81 (33%), Positives = 50/81 (61%), Gaps = 2/81 (2%) Query 31 LPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPL 90 +P AS ++ + + + VL DGR +G L + DQ N+VL++ E++ H +P Sbjct 4 MPGTASLIEDI-DKKHLVLLRDGRTLIGILRSIDQFANLVLHQTVERI-HVGKKFGDIPR 61 Query 91 GLYLLRGDNIAVVGQVDEDVE 111 G++++RG+N+ ++G+VD D E Sbjct 62 GIFVVRGENVVLLGEVDLDKE 82 > xla:100049754 lsm1; LSM1 homolog, U6 small nuclear RNA associated; K12620 U6 snRNA-associated Sm-like protein LSm1 Length=133 Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 52/86 (60%), Gaps = 4/86 (4%) Query 31 LPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPL 90 +P AS ++ + + + VL DGR +G L + DQ N+VL++ E+ +H +P Sbjct 4 MPGTASLIEDI-DKKHLVLLRDGRTLIGYLRSIDQFANLVLHQTVER-IHVGKKYGDIPR 61 Query 91 GLYLLRGDNIAVVGQVDEDVEKSIDA 116 G++++RG+N+ ++G++ D+EK D Sbjct 62 GIFVVRGENVVLLGEI--DLEKESDT 85 > xla:735185 hypothetical protein MGC131170; K12620 U6 snRNA-associated Sm-like protein LSm1 Length=133 Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 52/86 (60%), Gaps = 4/86 (4%) Query 31 LPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPL 90 +P AS ++ + + + VL DGR +G L + DQ N+VL++ E+ +H +P Sbjct 4 MPGTASLIEDI-DKKHLVLLRDGRTLIGYLRSIDQFANLVLHQTVER-IHVGKKYGDIPR 61 Query 91 GLYLLRGDNIAVVGQVDEDVEKSIDA 116 G++++RG+N+ ++G++ D+EK D Sbjct 62 GIFVVRGENVVLLGEI--DLEKENDT 85 > mmu:67207 Lsm1, 2810025O06Rik, CASM; LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae); K12620 U6 snRNA-associated Sm-like protein LSm1 Length=133 Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 52/86 (60%), Gaps = 4/86 (4%) Query 31 LPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPL 90 +P AS ++ + + + VL DGR +G L + DQ N+VL++ E+ +H +P Sbjct 4 MPGTASLIEDI-DKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVER-IHVGKKYGDIPR 61 Query 91 GLYLLRGDNIAVVGQVDEDVEKSIDA 116 G++++RG+N+ ++G++ D+EK D Sbjct 62 GIFVVRGENVVLLGEI--DLEKESDT 85 > hsa:27257 LSM1, CASM, YJL124C; LSM1 homolog, U6 small nuclear RNA associated (S. cerevisiae); K12620 U6 snRNA-associated Sm-like protein LSm1 Length=133 Score = 47.8 bits (112), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/86 (31%), Positives = 52/86 (60%), Gaps = 4/86 (4%) Query 31 LPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPL 90 +P AS ++ + + + VL DGR +G L + DQ N+VL++ E+ +H +P Sbjct 4 MPGTASLIEDI-DKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVER-IHVGKKYGDIPR 61 Query 91 GLYLLRGDNIAVVGQVDEDVEKSIDA 116 G++++RG+N+ ++G++ D+EK D Sbjct 62 GIFVVRGENVVLLGEI--DLEKESDT 85 > tpv:TP02_0362 small nuclear ribonucleoprotein B; K11086 small nuclear ribonucleoprotein B and B' Length=155 Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%) Query 31 LPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE---KVVHEDAPVEI 87 +P + +Q L++ V V D R F+GTL+A+D+ N+VL+ C E + + E+ Sbjct 1 MPGKNTRMQHWLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNRTEV 60 Query 88 V-PLGLYLLRGDNI 100 LG LLRG+NI Sbjct 61 KRTLGFVLLRGENI 74 > cpv:cgd1_2910 hypothetical protein ; K11086 small nuclear ribonucleoprotein B and B' Length=139 Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%) Query 38 LQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE--KVVHEDAPVEIV-PLGLYL 94 +Q + +R+ V D R+ +G L+AFD+ N+VL+ C E +V + E+ LGL + Sbjct 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEESKELKRSLGLIM 60 Query 95 LRGDNI 100 LRG+NI Sbjct 61 LRGENI 66 > cpv:cgd5_3710 small nuclear ribonucleoprotein U6 Length=160 Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 2/92 (2%) Query 38 LQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLYLLRG 97 L+ L+ + V+ DGR F G +FDQ ++ L + E + D EI G + RG Sbjct 46 LEEDLDKEIYVVLRDGRQFTGIFRSFDQYGSLCLERSFEVFSNNDCYNEIYQ-GCMIFRG 104 Query 98 DNIAVVGQVDEDVEKSIDASGVRAPPLKPIKH 129 DN+ + G +D+++ KS +A + + IK Sbjct 105 DNLMLCGLIDQNI-KSYNAKKIPLADILKIKQ 135 > pfa:PF14_0146 ribonucleoprotein, putative; K11086 small nuclear ribonucleoprotein B and B' Length=201 Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query 36 SGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE--KVVHEDAPVEIVP--LG 91 S L++ L++RV V D R F+GT +++D+ NIVL E KV ++ ++ + +G Sbjct 5 SRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSLKEIKRVVG 64 Query 92 LYLLRGDNI 100 L L+RG+NI Sbjct 65 LILIRGENI 73 > mmu:20646 Snrpn, 2410045I01Rik, HCERN3, MGC18604, MGC30325, Peg4, SMN; small nuclear ribonucleoprotein N; K11100 small nuclear ribonucleoprotein N Length=240 Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE------KVVHEDAPVEIV 88 +S + +++R+ + DGR+F+GT AFD+ N++L C E K + E Sbjct 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65 Query 89 PLGLYLLRGDNI 100 LGL LLRG+N+ Sbjct 66 VLGLVLLRGENL 77 > hsa:6638 SNRPN, DKFZp686C0927, DKFZp686M12165, DKFZp761I1912, DKFZp762N022, FLJ33569, FLJ36996, FLJ39265, HCERN3, MGC29886, PWCR, RT-LI, SM-D, SMN, SNRNP-N, SNURF-SNRPN; small nuclear ribonucleoprotein polypeptide N; K11100 small nuclear ribonucleoprotein N Length=240 Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE------KVVHEDAPVEIV 88 +S + +++R+ + DGR+F+GT AFD+ N++L C E K + E Sbjct 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKR 65 Query 89 PLGLYLLRGDNI 100 LGL LLRG+N+ Sbjct 66 VLGLVLLRGENL 77 > dre:402966 snrpb, MGC77315, Snrpn, zgc:77315; small nuclear ribonucleoprotein polypeptides B and B1; K11086 small nuclear ribonucleoprotein B and B' Length=239 Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE------KVVHEDAPVEIV 88 +S + +++R+ + DGR+F+GT AFD+ N++L C E K + E Sbjct 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKR 65 Query 89 PLGLYLLRGDNI 100 LGL LLRG+N+ Sbjct 66 VLGLVLLRGENL 77 > cel:F40F8.9 lsm-1; LSM Sm-like protein family member (lsm-1); K12620 U6 snRNA-associated Sm-like protein LSm1 Length=125 Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 1/77 (1%) Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLYL 94 A L L+ ++ V+ DGR +G L + DQ N++L E+ E E G L Sbjct 11 AISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCE-TGQGFML 69 Query 95 LRGDNIAVVGQVDEDVE 111 +RG+N+ + G++D+ +E Sbjct 70 IRGENVELAGEIDDTIE 86 > sce:YJR022W LSM8; Lsm (Like Sm) protein; forms heteroheptameric complex (with Lsm2p, Lsm3p, Lsm4p, Lsm5p, Lsm6p, and Lsm7p) that is part of spliceosomal U6 snRNP and is also implicated in processing of pre-tRNA, pre-snoRNA, and pre-rRNA; K12627 U6 snRNA-associated Sm-like protein LSm8 Length=109 Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 11/100 (11%) Query 34 MASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLY 93 M++ L+ L RV ++ DG + +L FD++TN+ + ++ E Sbjct 1 MSATLKDYLNKRVVIIKVDGECLIASLNGFDKNTNLFITNVFNRISKE------FICKAQ 54 Query 94 LLRGDNIAVVGQVDEDVEKS---IDASGVRAPPLKPIKHS 130 LLRG IA+VG +D + + S ID V P LK K+ Sbjct 55 LLRGSEIALVGLIDAENDDSLAPIDEKKV--PMLKDTKNK 92 > mmu:20638 Snrpb, AL024368, AU018828, SM-B, SM11, SMB, SNRNP-B; small nuclear ribonucleoprotein B; K11086 small nuclear ribonucleoprotein B and B' Length=231 Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE------KVVHEDAPVEIV 88 +S + +++R+ + DGR+F+GT AFD+ N++L C E K + E Sbjct 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65 Query 89 PLGLYLLRGDNI 100 LGL LLRG+N+ Sbjct 66 VLGLVLLRGENL 77 > hsa:6628 SNRPB, COD, SNRPB1, Sm-B/B', SmB/B', SmB/SmB', snRNP-B; small nuclear ribonucleoprotein polypeptides B and B1; K11086 small nuclear ribonucleoprotein B and B' Length=231 Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE------KVVHEDAPVEIV 88 +S + +++R+ + DGR+F+GT AFD+ N++L C E K + E Sbjct 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKR 65 Query 89 PLGLYLLRGDNI 100 LGL LLRG+N+ Sbjct 66 VLGLVLLRGENL 77 > tgo:TGME49_100280 small nuclear ribonucleoprotein, putative Length=236 Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 0/48 (0%) Query 29 SQLPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE 76 S++P+ + LQ + +R+ V D R+ +G+L+AFD+ NIVL E Sbjct 40 SKMPSKNARLQQWINYRIRVCLQDSRMLVGSLLAFDRHMNIVLADAEE 87 > xla:379853 snrpn, MGC52854; small nuclear ribonucleoparticle-associated protein (snRNP) mRNA, clone Sm51; K11086 small nuclear ribonucleoprotein B and B' Length=236 Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 7/69 (10%) Query 38 LQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE------KVVHEDAPVEIVPLG 91 LQ + C+L DGR+F+GT AFD+ N++L C E K + E LG Sbjct 10 LQHIDFRMRCILQ-DGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLG 68 Query 92 LYLLRGDNI 100 L LLRG+N+ Sbjct 69 LVLLRGENL 77 > ath:AT5G44500 small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative; K11086 small nuclear ribonucleoprotein B and B' Length=254 Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 11/76 (14%) Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE----------KVVHEDAP 84 +S + + +R+ V DGR +G +AFD+ N+VL C E K +E+ Sbjct 6 SSKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEER- 64 Query 85 VEIVPLGLYLLRGDNI 100 E LGL LLRG+ + Sbjct 65 EERRTLGLVLLRGEEV 80 > ath:AT4G20440 smB; smB (small nuclear ribonucleoprotein associated protein B); K11086 small nuclear ribonucleoprotein B and B' Length=257 Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 10/75 (13%) Query 35 ASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE---------KVVHEDAPV 85 +S + + +R+ V DGR +G +AFD+ N+VL C E K ++E+ Sbjct 6 SSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKINEERED 65 Query 86 EIVPLGLYLLRGDNI 100 LGL LLRG+ + Sbjct 66 RRT-LGLVLLRGEEV 79 > cel:W08E3.1 snr-2; Small Nuclear Ribonucleoprotein family member (snr-2); K11086 small nuclear ribonucleoprotein B and B' Length=160 Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 6/69 (8%) Query 38 LQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE------KVVHEDAPVEIVPLG 91 + + L +R+ ++ DGR F+G AFD+ NI+L +C E K + E LG Sbjct 9 MMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILG 68 Query 92 LYLLRGDNI 100 L L+RG++I Sbjct 69 LVLVRGEHI 77 > xla:734887 snrpb, MGC130840, cod, sm-b/b', smb/b', smb/smb', snrnp-b, snrpb1; small nuclear ribonucleoprotein polypeptides B and B1; K11086 small nuclear ribonucleoprotein B and B' Length=234 Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 7/69 (10%) Query 38 LQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE------KVVHEDAPVEIVPLG 91 LQ + C L DGR+F+GT AFD+ N++L C E K + E LG Sbjct 10 LQHIDFRMRCTLQ-DGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLG 68 Query 92 LYLLRGDNI 100 L LLRG+N+ Sbjct 69 LVLLRGENL 77 > hsa:100133224 hypothetical protein LOC100133224 Length=202 Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust. Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 6/80 (7%) Query 27 CTSQLPTMASGLQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAE------KVVH 80 S+L + LQ +++R+ + +G +F G AFD+ N++L C E K V Sbjct 27 WQSRLWARVARLQQHIDYRMKCILQEGTIFFGIFKAFDKHVNLILCDCDEFRKIKPKNVK 86 Query 81 EDAPVEIVPLGLYLLRGDNI 100 + E GL LL G+N+ Sbjct 87 QPELEEKHFWGLVLLHGENL 106 > cpv:cgd4_1660 small nuclear ribonucleoprotein ; K11097 small nuclear ribonucleoprotein E Length=92 Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust. Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 3/63 (4%) Query 43 EHRVCVLTFDGR--LFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLYLLRGDNI 100 + RV + +D + + G + FD+ NIVL++ +E ++ E +G LLRG+NI Sbjct 27 KQRVQIWLYDHKNLVLEGVIQGFDEYMNIVLDQASEVYTKKEVRRE-TSVGQLLLRGENI 85 Query 101 AVV 103 +++ Sbjct 86 SLI 88 > cpv:cgd1_2690 hypothetical protein Length=67 Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query 56 FMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLYLLRGDNIAVVGQVDEDVE 111 + GTL++FD+ NI+LN C E + + LG +R +N+ + + +E E Sbjct 3 YKGTLVSFDEYMNILLNDCEEWIDNTKKG----TLGKVFIRCNNVLYISRAEESKE 54 > cel:ZK593.7 lsm-7; LSM Sm-like protein family member (lsm-7); K12626 U6 snRNA-associated Sm-like protein LSm7 Length=104 Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust. Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 4/74 (5%) Query 38 LQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPV----EIVPLGLY 93 L L+ + V GR G L FDQ N+VL+ C E + P E LGL Sbjct 16 LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLI 75 Query 94 LLRGDNIAVVGQVD 107 + RG I VV D Sbjct 76 VARGTAITVVSPAD 89 > cel:Y62E10A.12 lsm-3; LSM Sm-like protein family member (lsm-3); K12622 U6 snRNA-associated Sm-like protein LSm3 Length=102 Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust. Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 9/72 (12%) Query 42 LEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKV----VHEDAPVEIVP-----LGL 92 L+ RV V + R G L AFDQ N+VL++ E + V ED EI + + Sbjct 25 LDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDTFEEIYKQTKRVVPM 84 Query 93 YLLRGDNIAVVG 104 +RGD++ +V Sbjct 85 LFVRGDSVILVS 96 > ath:AT2G03870 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative; K12626 U6 snRNA-associated Sm-like protein LSm7 Length=99 Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust. Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%) Query 53 GRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVP----LGLYLLRGDNIAVVGQVD 107 GR GTL +DQ N+VL++ E V D P++ LGL + RG + +V D Sbjct 26 GRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTAVMLVSPTD 84 > cel:Y48G1C.9 hypothetical protein Length=103 Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust. Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 0/33 (0%) Query 45 RVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEK 77 R + DGR GT+IA D+ N+V NK E+ Sbjct 34 RYEIRMTDGRYIRGTMIATDKDANMVFNKADER 66 > sce:YOR159C SME1; Sm E; SmE; K11097 small nuclear ribonucleoprotein E Length=94 Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%) Query 58 GTLIAFDQSTNIVLNKCAEKVVHEDAPVEIV----PLGLYLLRGDNIAVVGQVD 107 G ++ FD+ N+V+++ E V+ E V PLG LL+GDNI ++ D Sbjct 41 GKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLITSAD 94 > ath:AT3G11500 small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative; K11099 small nuclear ribonucleoprotein G Length=79 Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust. Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 5/66 (7%) Query 38 LQSLLEHRVCVLTFDGRLFMGTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLYLLRG 97 L+ ++ ++ + R+ +GTL FDQ N+V++ E V+ D +I G+ ++RG Sbjct 10 LKKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE--VNGDDKTDI---GMVVIRG 64 Query 98 DNIAVV 103 ++I V Sbjct 65 NSIVTV 70 > pfa:MAL13P1.253 small nuclear ribonucleoprotein, putative; K11097 small nuclear ribonucleoprotein E Length=93 Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust. Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 3/52 (5%) Query 58 GTLIAFDQSTNIVLNKCAEKVVHEDAPVEIVPLGLYLLRGDNIAVVGQVDED 109 G ++ FD+ N+VL++ E V ++ E LG LL+GD I ++ +V + Sbjct 43 GIILGFDEYMNMVLDQTKEISVKKNTKKE---LGKILLKGDTITLIMEVKNE 91 Lambda K H 0.320 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2039374804 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40