bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_7759_orf1 Length=110 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_002980 hypothetical protein ; K14794 ribosomal RNA-... 96.7 2e-20 ath:AT2G34357 binding; K14794 ribosomal RNA-processing protein 12 50.8 bbo:BBOV_IV002570 21.m02817; hypothetical protein 42.0 5e-04 hsa:23223 RRP12, DKFZp762P1116, FLJ20231, KIAA0690; ribosomal ... 34.3 0.098 sce:YPL012W RRP12; Protein required for export of the ribosoma... 33.1 0.22 tpv:TP03_0393 hypothetical protein 30.8 1.0 cpv:cgd8_3380 Rrp12p like nucleolar protein ; K14794 ribosomal... 30.8 1.2 cel:Y57G11C.37 hypothetical protein 29.6 2.7 dre:266638 sec31a, cb354, sec31p, zgc:63547; sec31 homolog A (... 28.9 4.1 dre:569458 im:7163548; K11449 jumonji domain-containing protei... 28.5 6.2 bbo:BBOV_IV007450 23.m05961; ribosomal protein L2 27.7 8.4 xla:379186 ddi2, MGC53726; protein DDI1 homolog 2; K11885 DNA ... 27.7 9.3 > tgo:TGME49_002980 hypothetical protein ; K14794 ribosomal RNA-processing protein 12 Length=1915 Score = 96.7 bits (239), Expect = 2e-20, Method: Composition-based stats. Identities = 50/109 (45%), Positives = 72/109 (66%), Gaps = 0/109 (0%) Query 2 LGRLFDLYCGELPHSLVQQWAAVGLLLLKDHNKIAFVAGIQFAKACIRAGDMDDLAAWLP 61 L R+ Y ++ +L++Q A V LLLL+D +K F+A ++FA+ D L +LP Sbjct 1436 LSRVIFSYADQMDGALIKQIAEVVLLLLQDRDKQVFLAALRFARVIAHVFDGQALERFLP 1495 Query 62 SMLGVLKNPNAPKARMKIRHLIEKLCKVMGEEAVEKAMPEEHMPLLRHL 110 +ML L N +A +A+MKIR L+EKL K +GE AV++A P EH+PLLRHL Sbjct 1496 AMLCALNNKHAIRAKMKIRRLVEKLLKKLGEAAVKEAFPSEHLPLLRHL 1544 > ath:AT2G34357 binding; K14794 ribosomal RNA-processing protein 12 Length=1280 Score = 50.8 bits (120), Expect = 1e-06, Method: Composition-based stats. Identities = 35/85 (41%), Positives = 46/85 (54%), Gaps = 3/85 (3%) Query 26 LLLLKDHNKIAFVAGIQFAKACIRAGDMDDLAAWLPSML-GVLKNPNAPKA--RMKIRHL 82 LLL+ NK A + K + ++ L A L SM+ G+LK P K + K+R L Sbjct 923 FLLLQRKNKEITKANLGLLKVLVAKSPVEGLHANLKSMVEGLLKWPEGTKNLFKAKVRLL 982 Query 83 IEKLCKVMGEEAVEKAMPEEHMPLL 107 +E L K G EAV+ MPEEHM LL Sbjct 983 LEMLIKKCGTEAVKSVMPEEHMKLL 1007 > bbo:BBOV_IV002570 21.m02817; hypothetical protein Length=1281 Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats. Identities = 26/111 (23%), Positives = 58/111 (52%), Gaps = 3/111 (2%) Query 2 LGRLFDLYCGE-LPHSLVQQWAAVGLLLLKDHNKIAFVAGIQFAKACIRAGDMDDLAAWL 60 L RL + E + ++L Q ++ V LL K+ ++ ++FA+ CI + + + Sbjct 1056 LTRLMARHSSEAVKYNLTQVFSYVFRLLSMADQKL-YIQLLKFARVCIVKLNQEQVLWLA 1114 Query 61 PSMLGVLKNPNA-PKARMKIRHLIEKLCKVMGEEAVEKAMPEEHMPLLRHL 110 P ++ + N ++++ +R +++KL + + + P+EH+PL+ HL Sbjct 1115 PMLMKMFDNATCCQRSKVYVRRVVQKLMVKLSRDQIIHIFPQEHLPLMHHL 1165 > hsa:23223 RRP12, DKFZp762P1116, FLJ20231, KIAA0690; ribosomal RNA processing 12 homolog (S. cerevisiae); K14794 ribosomal RNA-processing protein 12 Length=1236 Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust. Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 4/106 (3%) Query 5 LFDLYCGELPHSLVQQWAAVGLLLLKDHNKIAFVAGIQFAKACIRAGDMDDLAAWLP--- 61 LF+ + G + S V+Q LLL + + + F K + D+ LA + Sbjct 867 LFE-FKGLMGTSTVEQLLENVCLLLASRTRDVVKSALGFIKVAVTVMDVAHLAKHVQLVM 925 Query 62 SMLGVLKNPNAPKARMKIRHLIEKLCKVMGEEAVEKAMPEEHMPLL 107 +G L + RMK+R+L K + G E V++ +PEE+ +L Sbjct 926 EAIGKLSDDMRRHFRMKLRNLFTKFIRKFGFELVKRLLPEEYHRVL 971 > sce:YPL012W RRP12; Protein required for export of the ribosomal subunits; associates with the RNA components of the pre-ribosomes; contains HEAT-repeats; K14794 ribosomal RNA-processing protein 12 Length=1228 Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 3/87 (3%) Query 27 LLLKDHNKIAFVAGIQFAKACIRAGDMDDLAAWLPSMLGVL---KNPNAPKARMKIRHLI 83 L L +++ + I F K C+ + + +P +L L + + + K++H+I Sbjct 933 LYLTSNSREIVKSAIGFTKVCVLGLPEELMRPKVPELLLKLLRWSHEHTGHFKAKVKHII 992 Query 84 EKLCKVMGEEAVEKAMPEEHMPLLRHL 110 E+L + G + +E PEE LL ++ Sbjct 993 ERLIRRFGYDYIEANFPEEDRRLLTNI 1019 > tpv:TP03_0393 hypothetical protein Length=1424 Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 39/75 (52%), Gaps = 1/75 (1%) Query 37 FVAGIQFAKACIRAGDMDDLAAWLPSMLGVLKNPNA-PKARMKIRHLIEKLCKVMGEEAV 95 ++ ++F + + + D+L P+++ + N KA++ +R L+EK+ + + + Sbjct 1247 YIQILKFFRIVMVNMNHDNLVKVTPNIMKLFNNERCCSKAKIYVRRLVEKMLTRLKRDYL 1306 Query 96 EKAMPEEHMPLLRHL 110 P+EH L+ ++ Sbjct 1307 FSIFPKEHFSLVTNI 1321 > cpv:cgd8_3380 Rrp12p like nucleolar protein ; K14794 ribosomal RNA-processing protein 12 Length=1339 Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%) Query 54 DDLAAWLPSMLG-VLKNPNAPKARMKIRHLIEKLCKVMGEEAVEKAMPEEHMPLLRHL 110 D + + P+++ +L N + K R+ +R ++ L K G E + P EH L R+L Sbjct 1029 DLMWNYTPNIISNILNNQCSLKFRIYVRKILISLIKRFGAEKTSQVFPLEHNQLYRYL 1086 > cel:Y57G11C.37 hypothetical protein Length=837 Score = 29.6 bits (65), Expect = 2.7, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 7/41 (17%) Query 57 AAWLPSMLGVL-------KNPNAPKARMKIRHLIEKLCKVM 90 A W PS+LG+L K N+P + + LI +C V+ Sbjct 239 ALWFPSLLGILMWFLGGFKYKNSPGDKQDLYQLISDICFVL 279 > dre:266638 sec31a, cb354, sec31p, zgc:63547; sec31 homolog A (S. cerevisiae); K14005 protein transport protein SEC31 Length=1254 Score = 28.9 bits (63), Expect = 4.1, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 6/45 (13%) Query 68 KNPNAPKARMK------IRHLIEKLCKVMGEEAVEKAMPEEHMPL 106 +NP+ P+ M+ I +I+ L + E+ +K +PEEHM L Sbjct 1109 RNPSMPQGNMEGAPGAPIGDVIKPLQAIPTEKITKKPIPEEHMVL 1153 > dre:569458 im:7163548; K11449 jumonji domain-containing protein 1 [EC:1.14.11.-] Length=1581 Score = 28.5 bits (62), Expect = 6.2, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 9/80 (11%) Query 31 DHNKIAFVAGIQFAKACIRAGDMDDLAAW----LPSMLGVLKNPNAPKARMKIRHLIEKL 86 D A +AG + I GD+DD+ + G L + A K KIR L+ K+ Sbjct 1393 DQESEADLAGFKEVMQTIEEGDVDDMTKRRVYEIKEKPGALWHIYAAKDAEKIRELLRKV 1452 Query 87 CKVMGEEAVEKAMPEEHMPL 106 + G+E P +H P+ Sbjct 1453 GEEQGQEN-----PPDHDPI 1467 > bbo:BBOV_IV007450 23.m05961; ribosomal protein L2 Length=332 Score = 27.7 bits (60), Expect = 8.4, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 11/52 (21%) Query 21 WAAVGLLLLKDHNKIAFVAGIQFAKACIRAGDMDDLAAWLPSMLGVLKNPNA 72 WA +G + +HNK + +AG +L W PS+ G+ NPNA Sbjct 234 WATLGQVSNIEHNK----------RILKKAGTRRNLG-WRPSVRGIAMNPNA 274 > xla:379186 ddi2, MGC53726; protein DDI1 homolog 2; K11885 DNA damage-inducible protein 1 Length=393 Score = 27.7 bits (60), Expect = 9.3, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 0/42 (0%) Query 61 PSMLGVLKNPNAPKARMKIRHLIEKLCKVMGEEAVEKAMPEE 102 P L +LK N P A + +EK KV+ E+ E+A E+ Sbjct 140 PHELSLLKERNPPLAEALLSGDLEKFTKVLQEQQQERARREQ 181 Lambda K H 0.325 0.140 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2067351240 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40