bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_7835_orf2
Length=141
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_080380 non-transmembrane antigen (EC:3.2.1.143); K0... 72.8 3e-13
cpv:cgd5_2130 chromatin associated proein with a chromodomain ... 30.0 2.4
mmu:72807 Zfp429, 2810487A22Rik, AI929863, Rsl2; zinc finger p... 29.3 3.9
sce:YDR499W LCD1, DDC2, PIE1; Essential protein required for t... 29.3 3.9
hsa:2733 GLE1, GLE1L, LCCS, LCCS1, hGLE1; GLE1 RNA export medi... 28.1 9.5
> tgo:TGME49_080380 non-transmembrane antigen (EC:3.2.1.143);
K07759 poly(ADP-ribose) glycohydrolase [EC:3.2.1.143]
Length=553
Score = 72.8 bits (177), Expect = 3e-13, Method: Composition-based stats.
Identities = 42/123 (34%), Positives = 65/123 (52%), Gaps = 3/123 (2%)
Query 21 AILLPQNPQGWQQVQQILAEVEAGKVPKTAGEYKQLFTSILTAAGNWRVDKPLRI---GP 77
AIL + W + + IL V +G P + L +L +GN R +K RI G
Sbjct 47 AILRTPVEEDWGKTKYILNFVASGFGPADPQQLASLQKRLLKLSGNIRTEKNKRILQRGL 106
Query 78 LTHHLATHKNLSKSLLPFLASLARRLPDFFPSGIRHLGRDNPAVHLRRIEVLALLAALFF 137
L + LPF+A+L R+ + FPSG++++ +NP VHLR+I+V L+AA F
Sbjct 107 LNYLEENPGKFFSHDLPFMATLVMRIDELFPSGLQYITPENPQVHLRKIQVFTLIAAAFL 166
Query 138 GIV 140
G++
Sbjct 167 GVI 169
> cpv:cgd5_2130 chromatin associated proein with a chromodomain
at the C-terminus
Length=1075
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 0/41 (0%)
Query 69 VDKPLRIGPLTHHLATHKNLSKSLLPFLASLARRLPDFFPS 109
+ P+ + P THH+ K LS S L S+ R P + S
Sbjct 494 IQNPIILAPKTHHMIVKKALSNSRYWSLDSITSRCPQSYTS 534
> mmu:72807 Zfp429, 2810487A22Rik, AI929863, Rsl2; zinc finger
protein 429
Length=485
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query 23 LLPQNPQGWQQVQQILAEVEAGKVPKTAGEYKQLFTS---ILTAAGNWRVDKPLRIGPLT 79
L Q W +Q A V G P Y +L ++T N +KP + G
Sbjct 66 FLEQRQGPWDMKRQGAATVYPGITPNDPNNYSKLTNCKSLLITQRRNHIGEKPYKCGEFG 125
Query 80 HHLATHKNLS 89
L++HK LS
Sbjct 126 KALSSHKTLS 135
> sce:YDR499W LCD1, DDC2, PIE1; Essential protein required for
the DNA integrity checkpoint pathways; interacts physically
with Mec1p; putative homolog of S. pombe Rad26 and human ATRIP;
K12578 DNA damage checkpoint protein LCD1
Length=747
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 0/41 (0%)
Query 75 IGPLTHHLATHKNLSKSLLPFLASLARRLPDFFPSGIRHLG 115
I L ++ H N SK +PFL +L ++ F PS +L
Sbjct 278 IAVLIKEISVHPNESKLAVPFLVALMYQIVQFRPSATHNLA 318
> hsa:2733 GLE1, GLE1L, LCCS, LCCS1, hGLE1; GLE1 RNA export mediator
homolog (yeast)
Length=698
Score = 28.1 bits (61), Expect = 9.5, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query 16 QQGLRAILLPQNPQGWQQVQQILAE--VEAGKVPKTAGEYKQLFTSILTAAGNWRVDKPL 73
Q G R++ + NPQG VQ LAE V+ G+ + A ++ F + A+G W +
Sbjct 458 QSGGRSVSVTLNPQGLDFVQYKLAEKFVKQGE-EEVASHHEAAFPIAVVASGIWELHP-- 514
Query 74 RIGPL 78
R+G L
Sbjct 515 RVGDL 519
Lambda K H
0.322 0.135 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2618291680
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40