bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_8175_orf1
Length=193
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_085660 DEAD/DEAH box helicase domain-containing pro... 242 7e-64
tpv:TP04_0364 hypothetical protein; K12599 antiviral helicase ... 197 1e-50
bbo:BBOV_II002350 18.m06191; helicase with zinc finger motif p... 196 6e-50
cpv:cgd3_280 mRNA translation inhibitor SKI2 SFII helicase, DE... 158 9e-39
pfa:PFI0480w helicase with Zn-finger motif, putative; K12599 a... 138 1e-32
ath:AT3G46960 ATP binding / ATP-dependent helicase/ helicase/ ... 138 1e-32
sce:YLR398C SKI2; Ski complex component and putative RNA helic... 136 5e-32
dre:559653 skiv2l, fb70b07, wu:fb70b07; superkiller viralicidi... 134 2e-31
ath:AT2G06990 HEN2; HEN2 (hua enhancer 2); ATP-dependent helic... 129 5e-30
cel:F01G4.3 hypothetical protein; K12599 antiviral helicase SK... 129 6e-30
mmu:108077 Skiv2l, 4930534J06Rik, AW214248, Ddx13, SKI, Ski2w;... 129 8e-30
dre:100331276 superkiller viralicidic activity 2-like; K12599 ... 129 8e-30
hsa:6499 SKIV2L, 170A, DDX13, HLP, SKI2, SKI2W, SKIV2; superki... 128 1e-29
tgo:TGME49_013770 RNA helicase, putative ; K12598 ATP-dependen... 117 3e-26
sce:YJL050W MTR4, DOB1; ATP-dependent 3'-5' RNA helicase, invo... 116 4e-26
cel:W08D2.7 mtr-4; yeast MTR (mRNA TRansport) homolog family m... 115 9e-26
bbo:BBOV_II005660 18.m06470; DSHCT (NUC185) domain containing ... 115 1e-25
ath:AT1G59760 ATP-dependent RNA helicase, putative; K12598 ATP... 114 2e-25
mmu:72198 Skiv2l2, 2610528A15Rik, mKIAA0052; superkiller viral... 110 4e-24
hsa:23517 SKIV2L2, Dob1, KIAA0052, MGC142069, Mtr4, fSAP118; s... 109 5e-24
dre:406795 skiv2l2, wu:fd11a05, zgc:63838; superkiller viralic... 109 7e-24
tpv:TP02_0517 hypothetical protein; K12598 ATP-dependent RNA h... 109 7e-24
cpv:cgd8_2520 Mtr4p like SKI family SFII helicase ; K12598 ATP... 103 4e-22
pfa:PFF0100w ATP-dependent RNA Helicase, putative (EC:3.6.1.-)... 102 1e-21
ath:AT1G70070 EMB25; EMB25 (EMBRYO DEFECTIVE 25); ATP-dependen... 88.6 1e-17
hsa:91351 DDX60L, DKFZp781D1175, FLJ13468, FLJ31033, FLJ39050;... 82.4 9e-16
mmu:234311 Ddx60, 9830118M07, MGC19297; DEAD (Asp-Glu-Ala-Asp)... 79.7 6e-15
hsa:55601 DDX60, FLJ10787, FLJ20035; DEAD (Asp-Glu-Ala-Asp) bo... 75.9 9e-14
ath:AT4G32700 DNA-directed DNA polymerase family protein; K023... 68.9 9e-12
hsa:10721 POLQ, DKFZp781A0112, POLH, PRO0327; polymerase (DNA ... 65.5 1e-10
cel:C28H8.3 hypothetical protein; K01529 [EC:3.6.1.-] 64.3 2e-10
tpv:TP01_1165 ATP-dependent DEAD box helicase 64.3 2e-10
cel:Y55B1AL.3 hel-308; HELicase family member (hel-308) 62.0 1e-09
dre:566079 bZ1P14.5; si:rp71-1p14.5; K02349 DNA polymerase the... 62.0 1e-09
bbo:BBOV_III001710 17.m07172; DEAD/DEAH box helicase domain co... 60.8 2e-09
bbo:BBOV_IV011410 23.m05954; ATP-dependent RNA helicase 58.5 1e-08
pfa:PFI0165c DEAD/DEAH box helicase, putative; K01529 [EC:3.6... 58.2 2e-08
tgo:TGME49_049810 activating signal cointegrator 1 complex sub... 57.8 2e-08
cpv:cgd5_2070 SPAC694.02. SKI family SFII helicase 57.0 4e-08
sce:YER172C BRR2, PRP44, RSS1, SLT22, SNU246; Brr2p (EC:3.6.1.... 56.6 5e-08
cpv:cgd2_2770 U5 small nuclear ribonucleoprotein 200kDA helica... 56.6 5e-08
cel:Y46G5A.4 hypothetical protein; K12854 pre-mRNA-splicing he... 56.2 6e-08
ath:AT1G20960 emb1507 (embryo defective 1507); ATP binding / A... 55.8 1e-07
tpv:TP01_0582 RNA helicase 55.5 1e-07
mmu:320632 Snrnp200, A330064G03Rik, Ascc3l1, BC011390, HELIC2,... 55.5 1e-07
hsa:23020 SNRNP200, ASCC3L1, BRR2, FLJ11521, HELIC2, RP33, U5-... 55.5 1e-07
hsa:652147 u5 small nuclear ribonucleoprotein 200 kDa helicase... 55.1 1e-07
tgo:TGME49_116750 helicase, putative 54.7 2e-07
tpv:TP03_0667 DEAD box RNA helicase (EC:3.6.1.-); K01529 [EC:... 54.7 2e-07
tgo:TGME49_094350 DEAD/DEAH box helicase, putative 54.3 2e-07
> tgo:TGME49_085660 DEAD/DEAH box helicase domain-containing protein
; K12599 antiviral helicase SKI2 [EC:3.6.4.-]
Length=1329
Score = 242 bits (617), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 114/186 (61%), Positives = 153/186 (82%), Gaps = 0/186 (0%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
IKEM+EILFQRGL+RVLFATETLA+GLN+PAR+VVF+ +KK DG+R R L A+EYTQMAG
Sbjct 811 IKEMVEILFQRGLVRVLFATETLAIGLNMPARSVVFSALKKHDGQRSRMLLASEYTQMAG 870
Query 67 RAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSLS 126
RAGRRG+DT G+VYIF +++P PK+LT MMVE+A PL SRFRL+YQTLLLL A ++S+S
Sbjct 871 RAGRRGIDTFGHVYIFCSDDLPEPKELTGMMVEKANPLHSRFRLTYQTLLLLAARSHSMS 930
Query 127 IETLIRSSFREAAKTTQRPVLKRDLRRCQKALASMPPIDCVFGKPTIREYAETQIKLRKI 186
+ + + SF+EAA+T+ PV KRDLRR +K L ++P + CVFG+P I + AE + + R I
Sbjct 931 MTSFLSQSFKEAARTSLLPVFKRDLRRKRKELHALPDVRCVFGEPAIEDLAELEDRSRGI 990
Query 187 AQKVYL 192
A+++++
Sbjct 991 AEEIHM 996
> tpv:TP04_0364 hypothetical protein; K12599 antiviral helicase
SKI2 [EC:3.6.4.-]
Length=1069
Score = 197 bits (502), Expect = 1e-50, Method: Composition-based stats.
Identities = 95/173 (54%), Positives = 127/173 (73%), Gaps = 1/173 (0%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
IKEM+EILF RGLI+VLFATET A+G+N+PAR+VVFT I K DG R L ++EYTQMAG
Sbjct 501 IKEMVEILFSRGLIKVLFATETFAMGVNMPARSVVFTSIYKHDGITYRYLTSSEYTQMAG 560
Query 67 RAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSLS 126
RAGRRGLDT GNVYIF +E P +DLT MM+ER+ L SRFR++Y LL + + + ++
Sbjct 561 RAGRRGLDTFGNVYIFCSDEPPDVQDLTNMMIERSTRLESRFRITYNMLLQIQ-SRDHMN 619
Query 127 IETLIRSSFREAAKTTQRPVLKRDLRRCQKALASMPPIDCVFGKPTIREYAET 179
I ++ SFRE K + P+LK+ + + + L S+PPI C++G+PTI Y +T
Sbjct 620 ITEMMLKSFREREKMMKIPLLKKQINKKKHELMSLPPISCIYGEPTIENYYKT 672
> bbo:BBOV_II002350 18.m06191; helicase with zinc finger motif
protein; K12599 antiviral helicase SKI2 [EC:3.6.4.-]
Length=1113
Score = 196 bits (497), Expect = 6e-50, Method: Composition-based stats.
Identities = 92/184 (50%), Positives = 135/184 (73%), Gaps = 1/184 (0%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
+KE++EILF RGLI+VLFATET A+G+N+PAR+V+FT I K DG++ R L A+EYTQMAG
Sbjct 529 MKEIVEILFSRGLIKVLFATETFAMGVNMPARSVIFTSIHKHDGQKTRHLTASEYTQMAG 588
Query 67 RAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSLS 126
RAGRRGLD+ G+VYIF P++ P +DLTTMM E++ L S+FR++Y LL +H+ + ++
Sbjct 589 RAGRRGLDSFGSVYIFCPDDPPDLQDLTTMMFEKSTKLESKFRITYNMLLQVHSREH-MN 647
Query 127 IETLIRSSFREAAKTTQRPVLKRDLRRCQKALASMPPIDCVFGKPTIREYAETQIKLRKI 186
I ++ SF+E K P+ KRD R ++ L+++P +DC++G+P+I EY + R I
Sbjct 648 ITEMMLKSFKETYKMKNIPIFKRDNIRKRQELSTIPKVDCIYGEPSIEEYHKLDGCSRTI 707
Query 187 AQKV 190
A +
Sbjct 708 ADNL 711
> cpv:cgd3_280 mRNA translation inhibitor SKI2 SFII helicase,
DEXDc+HELICc ; K01509 adenosinetriphosphatase [EC:3.6.1.3]
Length=1439
Score = 158 bits (400), Expect = 9e-39, Method: Composition-based stats.
Identities = 78/149 (52%), Positives = 108/149 (72%), Gaps = 3/149 (2%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
IKEM EILF RGLI+VLFATET+++G+N PAR++VFT IKK DG + R L ++EYTQM+G
Sbjct 577 IKEMTEILFTRGLIKVLFATETISMGINCPARSIVFTSIKKYDGRKNRILLSSEYTQMSG 636
Query 67 RAGRRGLDTCGNVYIF--APEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANS 124
RAGRRG+DT GNV+IF + E +P D+ MM+ P+ S+FRL+YQ +L L + +S
Sbjct 637 RAGRRGIDTFGNVFIFNSSHETIPECIDIVKMMLNTYLPVQSKFRLTYQMILQL-SCRHS 695
Query 125 LSIETLIRSSFREAAKTTQRPVLKRDLRR 153
L IE ++ SF+E ++ P+ R+L R
Sbjct 696 LKIEDMMTKSFKEMFRSINLPIFHRNLNR 724
> pfa:PFI0480w helicase with Zn-finger motif, putative; K12599
antiviral helicase SKI2 [EC:3.6.4.-]
Length=1373
Score = 138 bits (347), Expect = 1e-32, Method: Composition-based stats.
Identities = 78/191 (40%), Positives = 123/191 (64%), Gaps = 7/191 (3%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
+KE++EILF +GLI+VLFATET A+G+N+P ++VVFT I K D R R L ++EYTQM+G
Sbjct 692 LKEIVEILFSKGLIKVLFATETFAMGINMPTKSVVFTSIYKHDHLRKRILTSSEYTQMSG 751
Query 67 RAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSLS 126
RAGRR D G VYI + +P LT MM+++A L S+F+++Y +L L ++
Sbjct 752 RAGRRSSDKYGYVYICCCDNIPDQVQLTEMMMQKAVSLKSKFKVTYNMILKL-LINKQIN 810
Query 127 IETLIRSSFREAAKTTQRPVLKRDLRRCQKALASMPPIDCVFGK------PTIREYAETQ 180
IE ++ SSF E+ + Q P+ K+DL+R +K L ++ + C++ + P I +Y +
Sbjct 811 IEKMLFSSFLESCRALQIPLFKKDLKRKRKLLQNIKEVQCIYEQENKNAYPPIEQYVQIN 870
Query 181 IKLRKIAQKVY 191
+L+ I ++
Sbjct 871 YRLKYIGLNLH 881
> ath:AT3G46960 ATP binding / ATP-dependent helicase/ helicase/
hydrolase, acting on acid anhydrides, in phosphorus-containing
anhydrides / nucleic acid binding; K12599 antiviral helicase
SKI2 [EC:3.6.4.-]
Length=1347
Score = 138 bits (347), Expect = 1e-32, Method: Composition-based stats.
Identities = 77/185 (41%), Positives = 117/185 (63%), Gaps = 5/185 (2%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
+KE++E+LF RG+I+VLF+TET A+G+N PARTVVF ++K DG+ R L EYTQMAG
Sbjct 726 VKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDALRKFDGKEFRQLLPGEYTQMAG 785
Query 67 RAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLH-AAANSL 125
RAGRRGLD G V + +EVP DL ++V A L S+FRL+Y +++LH L
Sbjct 786 RAGRRGLDKTGTVVVMCRDEVPDESDLRRVIVGSATRLESQFRLTY--IMILHLLRVEEL 843
Query 126 SIETLIRSSFREAAKTTQRPVLKRDLRRCQKALASMPPIDCVFGKPTIREYAETQIKLRK 185
+E +++ SF E + P K+ L +++L + I+C+ G+P I +Y + ++ +
Sbjct 844 KVEDMLKRSFAEFHAQKKLPE-KQQLLMIKRSLPT-KHIECIKGEPAIEDYYDMYMEANE 901
Query 186 IAQKV 190
K+
Sbjct 902 YNNKM 906
> sce:YLR398C SKI2; Ski complex component and putative RNA helicase,
mediates 3'-5' RNA degradation by the cytoplasmic exosome;
null mutants have superkiller phenotype of increased viral
dsRNAs and are synthetic lethal with mutations in 5'-3'
mRNA decay (EC:3.6.1.-); K12599 antiviral helicase SKI2 [EC:3.6.4.-]
Length=1287
Score = 136 bits (342), Expect = 5e-32, Method: Composition-based stats.
Identities = 76/182 (41%), Positives = 113/182 (62%), Gaps = 7/182 (3%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
+KE++EILF +G I+VLFATET A+GLNLP RTV+F+ I+K DG LR L E+TQMAG
Sbjct 703 VKELIEILFSKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAG 762
Query 67 RAGRRGLDTCGNVYIFA---PEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAAN 123
RAGRRGLD+ G V + A P + + K++T + R Q S+FRL+Y +L L
Sbjct 763 RAGRRGLDSTGTVIVMAYNSPLSIATFKEVTMGVPTRLQ---SQFRLTYNMILNL-LRIE 818
Query 124 SLSIETLIRSSFREAAKTTQRPVLKRDLRRCQKALASMPPIDCVFGKPTIREYAETQIKL 183
+L +E +I+ SF E AK T +P ++ ++ Q+ L ++ C I ++ E +
Sbjct 819 ALRVEEMIKYSFSENAKETLQPEHEKQIKVLQEELQTIEYKSCEICDNDIEKFLELMLAY 878
Query 184 RK 185
++
Sbjct 879 KE 880
> dre:559653 skiv2l, fb70b07, wu:fb70b07; superkiller viralicidic
activity 2 (S. cerevisiae homolog)-like; K12599 antiviral
helicase SKI2 [EC:3.6.4.-]
Length=1230
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 109/184 (59%), Gaps = 3/184 (1%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
+KE++E+LF RGL++VLFATET A+G+N+PARTVVF I+K DG R L EY QMAG
Sbjct 638 LKEVIEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAG 697
Query 67 RAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSLS 126
RAGRRGLD G V I V +L +MM+ + L S+FRL+Y T++L +L
Sbjct 698 RAGRRGLDATGTVIILCKAGVHDMGELHSMMLGKPTVLHSQFRLTY-TMILNLLRVEALR 756
Query 127 IETLIRSSFREAAKTTQRPVLKRDLRRCQKALASMPPIDCVFGKPTIREYAETQIKLRKI 186
+ +++ SF E + TQ ++ + + L+S+PP+D + Y T +L
Sbjct 757 VTDMMKRSFSENHRDTQ--AHEKRISELRNTLSSLPPLDTEGQLSDLLSYYHTITELHIT 814
Query 187 AQKV 190
Q +
Sbjct 815 TQSL 818
> ath:AT2G06990 HEN2; HEN2 (hua enhancer 2); ATP-dependent helicase/
RNA helicase; K12598 ATP-dependent RNA helicase DOB1
[EC:3.6.4.13]
Length=995
Score = 129 bits (325), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 76/186 (40%), Positives = 107/186 (57%), Gaps = 6/186 (3%)
Query 6 TIKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMA 65
IKE++E+LFQ GL++ LFATET A+GLN+PA+TVVFT +KK DG+ R + + EY QM+
Sbjct 412 VIKELVELLFQEGLVKALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMS 471
Query 66 GRAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLL-LLHAAANS 124
GRAGRRG D G I E++ L MM+ + PL S FRLSY T+L LL A
Sbjct 472 GRAGRRGKDERGICIIMIDEQM-EMNTLRDMMLGKPAPLLSTFRLSYYTILNLLSRAEGQ 530
Query 125 LSIETLIRSSFREAAKTTQRPVLKRDLRRCQKALASMPPIDCVFGKPTIREYAETQIKLR 184
+ E +IR SF + P + + + ++ A I G+ + EY Q +
Sbjct 531 FTAEHVIRHSFHQFQHEKALPDIGNKVSKLEEEAA----ILNASGEAEVAEYHNLQFDIA 586
Query 185 KIAQKV 190
K +K+
Sbjct 587 KHEKKL 592
> cel:F01G4.3 hypothetical protein; K12599 antiviral helicase
SKI2 [EC:3.6.4.-]
Length=1266
Score = 129 bits (324), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/175 (40%), Positives = 106/175 (60%), Gaps = 4/175 (2%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
+KE++E+LFQ+G +++LFATET A+G+N+PAR VVF I K DG R L+ EYTQMAG
Sbjct 639 LKEVVELLFQKGYVKILFATETFAMGVNMPARCVVFDSIMKHDGTERRMLNPGEYTQMAG 698
Query 67 RAGRRGLDTCGNVYIFAPEE-VPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSL 125
RAGRRGLD G V I + VP P L ++ +A L S+FR++Y +L L L
Sbjct 699 RAGRRGLDLTGTVIIICKDSTVPQPDVLKNLISGQALRLESKFRVTYSMILNL-LRVEQL 757
Query 126 SIETLIRSSFREAAKTTQRPVLKRDLRRCQKALASMPPIDCVFGKPT--IREYAE 178
IE +++ S+ E+ + ++ L + A+ +M I+C P +R+Y +
Sbjct 758 KIEDMLQRSYVESDSLRESKEKRKSLVDTKNAIQTMSTIECSTCSPNSQLRDYHD 812
> mmu:108077 Skiv2l, 4930534J06Rik, AW214248, Ddx13, SKI, Ski2w;
superkiller viralicidic activity 2-like (S. cerevisiae);
K12599 antiviral helicase SKI2 [EC:3.6.4.-]
Length=1244
Score = 129 bits (323), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 99/155 (63%), Gaps = 8/155 (5%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
+KE++E+LF RGL++VLFATET A+G+N+PARTVVF ++K DG R L EY QMAG
Sbjct 640 LKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAG 699
Query 67 RAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSLS 126
RAGRRGLD G V + VP DL MM+ + L S+FRL+Y T++L ++L
Sbjct 700 RAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTY-TMILNLLRVDALR 758
Query 127 IETLIRSSFREAAKTTQRPVLKRDLRRCQKALASM 161
+E +++ SF E ++D + ++ALA +
Sbjct 759 VEDMMKRSFSEFPS-------RKDSKAHEQALADL 786
> dre:100331276 superkiller viralicidic activity 2-like; K12599
antiviral helicase SKI2 [EC:3.6.4.-]
Length=1235
Score = 129 bits (323), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 99/155 (63%), Gaps = 8/155 (5%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
+KE++E+LF RGL++VLFATET A+G+N+PARTVVF ++K DG R L EY QMAG
Sbjct 643 LKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAG 702
Query 67 RAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSLS 126
RAGRRGLD G V + VP DL MM+ + L S+FRL+Y T++L ++L
Sbjct 703 RAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTY-TMILNLLRVDALR 761
Query 127 IETLIRSSFREAAKTTQRPVLKRDLRRCQKALASM 161
+E +++ SF E ++D + ++ALA +
Sbjct 762 VEDMMKRSFSEFPS-------RKDSKAHEQALAEL 789
> hsa:6499 SKIV2L, 170A, DDX13, HLP, SKI2, SKI2W, SKIV2; superkiller
viralicidic activity 2-like (S. cerevisiae); K12599 antiviral
helicase SKI2 [EC:3.6.4.-]
Length=1246
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/155 (44%), Positives = 99/155 (63%), Gaps = 8/155 (5%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
+KE++E+LF RGL++VLFATET A+G+N+PARTVVF ++K DG R L EY QMAG
Sbjct 643 LKEIVEMLFSRGLVKVLFATETFAMGVNMPARTVVFDSMRKHDGSTFRDLLPGEYVQMAG 702
Query 67 RAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSLS 126
RAGRRGLD G V + VP DL MM+ + L S+FRL+Y T++L ++L
Sbjct 703 RAGRRGLDPTGTVILLCKGRVPEMADLHRMMMGKPSQLQSQFRLTY-TMILNLLRVDALR 761
Query 127 IETLIRSSFREAAKTTQRPVLKRDLRRCQKALASM 161
+E +++ SF E ++D + ++ALA +
Sbjct 762 VEDMMKRSFSEFPS-------RKDSKAHEQALAEL 789
> tgo:TGME49_013770 RNA helicase, putative ; K12598 ATP-dependent
RNA helicase DOB1 [EC:3.6.4.13]
Length=1206
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
+KEM+EILFQ L+RVLF+TET ++G+N+PA+TV+FT I+K DG+ R +++ EY QMAG
Sbjct 569 VKEMIEILFQESLLRVLFSTETFSMGVNMPAKTVIFTAIRKYDGQEYRIVNSGEYIQMAG 628
Query 67 RAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLL 118
RAGRRGLD G V I E+V P++ + + + PL S F L + LL L
Sbjct 629 RAGRRGLDDRGIVIIMFDEQV-DPEEAKQLFMGQGAPLISTFHLGFNMLLNL 679
> sce:YJL050W MTR4, DOB1; ATP-dependent 3'-5' RNA helicase, involved
in nuclear RNA processing and degredation both as a component
of the TRAMP complex and in TRAMP independent processes;
member of the Dead-box family of helicases (EC:3.6.1.-);
K12598 ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Length=1073
Score = 116 bits (291), Expect = 4e-26, Method: Composition-based stats.
Identities = 68/184 (36%), Positives = 106/184 (57%), Gaps = 6/184 (3%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
+KE++EILFQ G ++VLFATET ++GLN+PA+TVVFT ++K DG++ R + EY QM+G
Sbjct 483 LKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSG 542
Query 67 RAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSLS 126
RAGRRGLD G V + E++ P+ M+ +A L S F L Y +L L +S
Sbjct 543 RAGRRGLDDRGIVIMMIDEKM-EPQVAKGMVKGQADRLDSAFHLGYNMILNL-MRVEGIS 600
Query 127 IETLIRSSFREAAKTTQRPVLKRDLRRCQKALASMPPIDCVFGKPTIREYAETQIKLRKI 186
E ++ SF + PV+++ L +K + D + ++EY E + ++
Sbjct 601 PEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVED----EENVKEYHEIEQAIKGY 656
Query 187 AQKV 190
+ V
Sbjct 657 REDV 660
> cel:W08D2.7 mtr-4; yeast MTR (mRNA TRansport) homolog family
member (mtr-4); K12598 ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Length=1026
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 63/154 (40%), Positives = 92/154 (59%), Gaps = 2/154 (1%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
+KE +EILF GL++VLFATET ++GLN+PARTVVFT +K DG R + + EY QMAG
Sbjct 450 LKETIEILFGEGLVKVLFATETFSMGLNMPARTVVFTSARKFDGSDNRYITSGEYIQMAG 509
Query 67 RAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSLS 126
RAGRRG D G V I + S D ++ PL S+FRL+Y +L L ++
Sbjct 510 RAGRRGKDDRGTV-ILMVDSAMSADDAKQIIKGATDPLNSQFRLTYNMVLNL-MRVEGMA 567
Query 127 IETLIRSSFREAAKTTQRPVLKRDLRRCQKALAS 160
+ +I +SF + + P + + + ++ +AS
Sbjct 568 VSWIINNSFHQFQSYAKIPEIDKKCVQVERKIAS 601
> bbo:BBOV_II005660 18.m06470; DSHCT (NUC185) domain containing
DEAD/DEAH box helicase family protein (EC:3.6.1.3); K12598
ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Length=986
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 84/129 (65%), Gaps = 2/129 (1%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
IKE++EILFQ GLI+VLF+TET ++G+N+PAR VVFT++ K DG+ R + + EY QMAG
Sbjct 400 IKEIIEILFQEGLIKVLFSTETFSMGVNMPARCVVFTNLSKWDGQTNRLITSGEYIQMAG 459
Query 67 RAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSLS 126
RAGRRGLD G V I + P++ + + +A L S F L Y LL L N+ +
Sbjct 460 RAGRRGLDEHGLVIIMMDRGI-KPEEAKAIFMGKANRLDSSFHLGYNMLLNLMRIENT-T 517
Query 127 IETLIRSSF 135
E LI SF
Sbjct 518 PEFLIERSF 526
> ath:AT1G59760 ATP-dependent RNA helicase, putative; K12598 ATP-dependent
RNA helicase DOB1 [EC:3.6.4.13]
Length=988
Score = 114 bits (286), Expect = 2e-25, Method: Composition-based stats.
Identities = 65/155 (41%), Positives = 96/155 (61%), Gaps = 2/155 (1%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
+KE++EILFQ GLI+ LFATET ++GLN+PA+TVVFT+++K DG++ R L + EY QM+G
Sbjct 397 LKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSG 456
Query 67 RAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSLS 126
RAGRRG+D G + I +E P +M+ A L S F LSY +LL
Sbjct 457 RAGRRGIDKRG-ICILMVDEKMEPAVAKSMLKGSADSLNSAFHLSYN-MLLNQLRCEEGD 514
Query 127 IETLIRSSFREAAKTTQRPVLKRDLRRCQKALASM 161
E L+R+SF + P L++ ++ ++ S+
Sbjct 515 PENLLRNSFFQFQADRAIPDLEKQIKSLEEERDSL 549
> mmu:72198 Skiv2l2, 2610528A15Rik, mKIAA0052; superkiller viralicidic
activity 2-like 2 (S. cerevisiae) (EC:3.6.4.13); K12598
ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Length=1040
Score = 110 bits (274), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 83/129 (64%), Gaps = 2/129 (1%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
+KE +EILF GLI+ LFATET A+G+N+PARTV+FT+ +K DG+ R + + EY QM+G
Sbjct 461 LKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKYDGKDFRWISSGEYIQMSG 520
Query 67 RAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSLS 126
RAGRRG+D G V + E++ SP ++ A PL S F L+Y +L L ++
Sbjct 521 RAGRRGMDDRGIVILMVDEKM-SPTIGKQLLKGSADPLNSAFHLTYNMVLNL-LRVEEIN 578
Query 127 IETLIRSSF 135
E ++ SF
Sbjct 579 PEYMLEKSF 587
> hsa:23517 SKIV2L2, Dob1, KIAA0052, MGC142069, Mtr4, fSAP118;
superkiller viralicidic activity 2-like 2 (S. cerevisiae) (EC:3.6.4.13);
K12598 ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Length=1042
Score = 109 bits (273), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 83/129 (64%), Gaps = 2/129 (1%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
+KE +EILF GLI+ LFATET A+G+N+PARTV+FT+ +K DG+ R + + EY QM+G
Sbjct 463 LKETIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSG 522
Query 67 RAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSLS 126
RAGRRG+D G V + E++ SP ++ A PL S F L+Y +L L ++
Sbjct 523 RAGRRGMDDRGIVILMVDEKM-SPTIGKQLLKGSADPLNSAFHLTYNMVLNL-LRVEEIN 580
Query 127 IETLIRSSF 135
E ++ SF
Sbjct 581 PEYMLEKSF 589
> dre:406795 skiv2l2, wu:fd11a05, zgc:63838; superkiller viralicidic
activity 2-like 2 (EC:3.6.4.13); K12598 ATP-dependent
RNA helicase DOB1 [EC:3.6.4.13]
Length=1034
Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 82/129 (63%), Gaps = 2/129 (1%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
+KE +EILF GL++ LFATET A+G+N+PARTV+FT +K DG+ R + + EY QM+G
Sbjct 456 LKETIEILFSEGLLKALFATETFAMGINMPARTVLFTSARKFDGKDFRWISSGEYIQMSG 515
Query 67 RAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSLS 126
RAGRRG+D G + IF +E SP ++ A PL S F L+Y +L L ++
Sbjct 516 RAGRRGMDERG-IVIFMVDEKMSPAVGKQLLKGSADPLNSAFHLTYNMVLNL-LRVEEIN 573
Query 127 IETLIRSSF 135
E ++ SF
Sbjct 574 PEYMLEKSF 582
> tpv:TP02_0517 hypothetical protein; K12598 ATP-dependent RNA
helicase DOB1 [EC:3.6.4.13]
Length=1012
Score = 109 bits (272), Expect = 7e-24, Method: Composition-based stats.
Identities = 62/132 (46%), Positives = 87/132 (65%), Gaps = 2/132 (1%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
IKE++EILFQ L++VLF+TET ++GLN+PA+TVVFT +KK DG +R + + EY QMAG
Sbjct 432 IKEIIEILFQESLLKVLFSTETFSMGLNMPAKTVVFTKMKKWDGREVRYISSGEYIQMAG 491
Query 67 RAGRRGLDTCGNVYIFAPE-EVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSL 125
RAGRRGLDT G V I + +V +++ + + + L S F L Y LL L ++
Sbjct 492 RAGRRGLDTIGVVIIMLDKSDVLIDEEVKKIFLGKPLNLDSTFHLGYNMLLNLMRIEDT- 550
Query 126 SIETLIRSSFRE 137
+ E LI SF +
Sbjct 551 TPEYLIERSFMQ 562
> cpv:cgd8_2520 Mtr4p like SKI family SFII helicase ; K12598 ATP-dependent
RNA helicase DOB1 [EC:3.6.4.13]
Length=1280
Score = 103 bits (257), Expect = 4e-22, Method: Composition-based stats.
Identities = 56/152 (36%), Positives = 92/152 (60%), Gaps = 2/152 (1%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
+KE++E+LF I+VLF+TET ++G+N+PA+TV+FT ++K DG+ R +++ E+ QM+G
Sbjct 427 VKEIVELLFGESFIKVLFSTETFSMGINMPAKTVIFTSLRKFDGKEYRIVNSGEFIQMSG 486
Query 67 RAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSLS 126
RAGRRGLD G + I +E+ P + +M+ + + S+F + Y LL L +
Sbjct 487 RAGRRGLDDRG-ITITMIDELADPWAIKSMLTGQPLRIDSQFYIGYNMLLNLLRLEGA-D 544
Query 127 IETLIRSSFREAAKTTQRPVLKRDLRRCQKAL 158
E +I SF + K + L ++ R Q L
Sbjct 545 PEYMINRSFSQFLKRKKTVSLHEEINRIQSIL 576
> pfa:PFF0100w ATP-dependent RNA Helicase, putative (EC:3.6.1.-);
K12598 ATP-dependent RNA helicase DOB1 [EC:3.6.4.13]
Length=1350
Score = 102 bits (253), Expect = 1e-21, Method: Composition-based stats.
Identities = 58/132 (43%), Positives = 82/132 (62%), Gaps = 8/132 (6%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
IKE++EI+FQ L++VLF+TET ++G+N+PA+TVVFT + K DG R + + EY QMAG
Sbjct 584 IKEIIEIMFQESLLKVLFSTETFSMGINMPAKTVVFTSLTKFDGLEKRLITSGEYIQMAG 643
Query 67 RAGRRGLDTCGNVYIFAPEEVPSP---KDLTTMMVERAQPLCSRFRLSYQTLLLLHAAAN 123
RAGRRGLD G V I + +P ++ + V A L S+F L Y +L L
Sbjct 644 RAGRRGLDDRGIVIIM----LDTPLHWREAHKLFVGEANRLVSQFHLGYNMILNL-LRIE 698
Query 124 SLSIETLIRSSF 135
++ E +I SF
Sbjct 699 GITPEFMIERSF 710
> ath:AT1G70070 EMB25; EMB25 (EMBRYO DEFECTIVE 25); ATP-dependent
helicase/ RNA helicase
Length=1171
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 6/136 (4%)
Query 8 KEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAGR 67
K +E LFQRGL++V+FATETLA G+N+PART V + + K G L E QMAGR
Sbjct 510 KSFIEELFQRGLVKVVFATETLAAGINMPARTAVISSLSKKAGNERIELGPNELYQMAGR 569
Query 68 AGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSLSI 127
AGRRG+D G + ++ ++ +PL S+F SY +L L A +
Sbjct 570 AGRRGIDEKGYT-VLVQTAFEGAEECCKLVFAGVKPLVSQFTASYGMVLNLVAGS----- 623
Query 128 ETLIRSSFREAAKTTQ 143
+ +SS EA K Q
Sbjct 624 KVTRKSSGTEAGKVLQ 639
> hsa:91351 DDX60L, DKFZp781D1175, FLJ13468, FLJ31033, FLJ39050;
DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like (EC:3.6.4.13)
Length=1706
Score = 82.4 bits (202), Expect = 9e-16, Method: Composition-based stats.
Identities = 50/116 (43%), Positives = 69/116 (59%), Gaps = 11/116 (9%)
Query 8 KEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAGR 67
KE +EILF +GLIRV+ ATETLA+G+++P ++VVF + L A Y QM+GR
Sbjct 1257 KEFVEILFVKGLIRVVTATETLALGIHMPCKSVVF-------AQDSVYLDALNYRQMSGR 1309
Query 68 AGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAAN 123
AGRRG D GNVY F ++P PK + ++ L +F LS +L L A+
Sbjct 1310 AGRRGQDLLGNVYFF---DIPLPK-IKRLLASSVPELRGQFPLSITLVLRLMLLAS 1361
> mmu:234311 Ddx60, 9830118M07, MGC19297; DEAD (Asp-Glu-Ala-Asp)
box polypeptide 60 (EC:3.6.4.13)
Length=1711
Score = 79.7 bits (195), Expect = 6e-15, Method: Composition-based stats.
Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 14/121 (11%)
Query 8 KEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAGR 67
K+++EILF++G IRV+ AT TLA+G+N+P ++VVF + L A Y QM+GR
Sbjct 1272 KQLVEILFRKGFIRVVTATGTLALGINMPCKSVVF-------AQNSVYLDALNYRQMSGR 1324
Query 68 AGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQ---TLLLLHAAANS 124
AGRRG D G+VY F ++P PK + ++ + L +F LS L+LL + A+
Sbjct 1325 AGRRGQDLLGDVYFF---DIPLPK-IGKLIKSKVPELRGQFPLSISLILRLMLLASKADD 1380
Query 125 L 125
L
Sbjct 1381 L 1381
> hsa:55601 DDX60, FLJ10787, FLJ20035; DEAD (Asp-Glu-Ala-Asp)
box polypeptide 60 (EC:3.6.4.13)
Length=1712
Score = 75.9 bits (185), Expect = 9e-14, Method: Composition-based stats.
Identities = 46/116 (39%), Positives = 68/116 (58%), Gaps = 11/116 (9%)
Query 8 KEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAGR 67
K+++EILF++G +RV+ AT TLA+G+N+P ++VVF + L A Y QM+GR
Sbjct 1273 KQLVEILFRKGYLRVVTATGTLALGVNMPCKSVVF-------AQNSVYLDALNYRQMSGR 1325
Query 68 AGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAAN 123
AGRRG D G+VY F ++P PK + ++ L F LS +L L A+
Sbjct 1326 AGRRGQDLMGDVYFF---DIPFPK-IGKLIKSNVPELRGHFPLSITLVLRLMLLAS 1377
> ath:AT4G32700 DNA-directed DNA polymerase family protein; K02349
DNA polymerase theta subunit [EC:2.7.7.7]
Length=2154
Score = 68.9 bits (167), Expect = 9e-12, Method: Composition-based stats.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 22/107 (20%)
Query 8 KEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKP-------DGERLRPLHAAE 60
+E++E +++GL+RVL AT TLA G+NLPAR V+F ++P DG R
Sbjct 848 REIVETCYRKGLVRVLTATSTLAAGVNLPARRVIF---RQPMIGRDFIDGTR-------- 896
Query 61 YTQMAGRAGRRGLDTCGN-VYIFAPEEVPSPKDLTTMMVERAQPLCS 106
Y QM+GRAGR G+DT G+ V I P E+ K + ++ E PL S
Sbjct 897 YKQMSGRAGRTGIDTKGDSVLICKPGEL---KRIMALLNETCPPLQS 940
> hsa:10721 POLQ, DKFZp781A0112, POLH, PRO0327; polymerase (DNA
directed), theta (EC:2.7.7.7); K02349 DNA polymerase theta
subunit [EC:2.7.7.7]
Length=2590
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 37/72 (51%), Positives = 49/72 (68%), Gaps = 8/72 (11%)
Query 8 KEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKP--DGERLRPLHAAEYTQMA 65
++++E F++GLIRVL AT TL+ G+NLPAR V+ I+ P G RPL Y QM
Sbjct 425 RDIIEGAFRQGLIRVLAATSTLSSGVNLPARRVI---IRTPIFGG---RPLDILTYKQMV 478
Query 66 GRAGRRGLDTCG 77
GRAGR+G+DT G
Sbjct 479 GRAGRKGVDTVG 490
> cel:C28H8.3 hypothetical protein; K01529 [EC:3.6.1.-]
Length=1714
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/81 (44%), Positives = 52/81 (64%), Gaps = 10/81 (12%)
Query 11 MEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAGRAGR 70
+E+LF+ G + VLF+T TL++G+N+P +TV+F D +L PL Y QM+GRAGR
Sbjct 1297 VEVLFRSGNLAVLFSTSTLSLGVNMPCKTVMF----GVDTLQLTPLL---YRQMSGRAGR 1349
Query 71 RGLDTCGNVYIFAPEEVPSPK 91
RG D GNV + +P+ K
Sbjct 1350 RGFDHSGNVIFMS---IPTSK 1367
> tpv:TP01_1165 ATP-dependent DEAD box helicase
Length=690
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 0/88 (0%)
Query 15 FQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAGRAGRRGLD 74
F +GL RVL A++ + +G+N+ R V+F + K DG RPL +E Q+AGRAGR G+
Sbjct 384 FNKGLTRVLVASDVIGMGVNVSIRRVIFYRLTKFDGNVSRPLTVSEVHQIAGRAGRFGIS 443
Query 75 TCGNVYIFAPEEVPSPKDLTTMMVERAQ 102
+ G V +++P+ +++ V + +
Sbjct 444 SEGFVSCVREQDLPTLREVMAQEVTQIE 471
> cel:Y55B1AL.3 hel-308; HELicase family member (hel-308)
Length=923
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query 8 KEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAGR 67
++ +E F GLI V+ AT TLA G+NLP R V+ IK P R R L A+Y QMAGR
Sbjct 479 RKCVEAAFMEGLIYVVCATSTLAAGVNLPVRRVI---IKAPMVGRER-LGKAQYLQMAGR 534
Query 68 AGRRGLDTCGN 78
AGR G DT G+
Sbjct 535 AGRAGFDTKGD 545
> dre:566079 bZ1P14.5; si:rp71-1p14.5; K02349 DNA polymerase theta
subunit [EC:2.7.7.7]
Length=2452
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 50/80 (62%), Gaps = 8/80 (10%)
Query 8 KEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKP--DGERLRPLHAAEYTQMA 65
++++E F++G IRVL AT TL+ G+NLPAR V+ I+ P +G L L Y QM
Sbjct 572 RDILEGAFRQGYIRVLAATSTLSSGVNLPARRVI---IRTPVFNGHLLDIL---TYKQMV 625
Query 66 GRAGRRGLDTCGNVYIFAPE 85
GRAGR+G+DT G + E
Sbjct 626 GRAGRKGVDTIGESVLVCKE 645
> bbo:BBOV_III001710 17.m07172; DEAD/DEAH box helicase domain
containing protein
Length=1996
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query 10 MMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAGRAG 69
+ E L++ G ++VLF+ +LA G+N+P ++V+F D L PL Y QM+GR G
Sbjct 1493 LTETLYRMGFLKVLFSGRSLAFGINVPCKSVIFMG----DNYELTPLM---YKQMSGRCG 1545
Query 70 RRGLDTCGNVYIFA 83
RRG D G+V +
Sbjct 1546 RRGFDLSGHVVFWG 1559
> bbo:BBOV_IV011410 23.m05954; ATP-dependent RNA helicase
Length=678
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query 21 RVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAGRAGRRGLDTCGNVY 80
++L A++ + +G+N+ + V+F + K DG R R L AAE Q+AGRAGR L+ CGN Y
Sbjct 388 QILVASDVIGMGVNVRIKRVIFHSLTKYDGSRYRMLTAAEVQQIAGRAGRYSLN-CGNGY 446
Query 81 IFAPEE 86
+ E
Sbjct 447 VGCTRE 452
> pfa:PFI0165c DEAD/DEAH box helicase, putative; K01529 [EC:3.6.1.-]
Length=2536
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 32/116 (27%), Positives = 64/116 (55%), Gaps = 11/116 (9%)
Query 10 MMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAGRAG 69
++E LF+ G ++++F+ + L++G+N+P R+++F G + L++ + Q +GRAG
Sbjct 1850 IVESLFRLGFVKIIFSNKNLSLGINIPCRSIIFA------GHTIE-LNSLMFKQTSGRAG 1902
Query 70 RRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSL 125
RRG D GN+ I+ + K+L ++ Q L + +++ + NSL
Sbjct 1903 RRGFDLYGNIIIWN----INFKNLKRLITSPLQTLSGTYSVNFTNICRSMLLYNSL 1954
> tgo:TGME49_049810 activating signal cointegrator 1 complex subunit
3, putative (EC:5.99.1.3)
Length=2539
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query 14 LFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGE--RLRPLHAAEYTQMAGRAGRR 71
LF++G +RVL AT TLA G+NLPAR VV + D E R + + QM GRAGR
Sbjct 1893 LFEKGFVRVLVATATLAWGMNLPARLVVVKGTEYYDAETNRYKDFPITDLLQMIGRAGRP 1952
Query 72 GLDTCGNVYIFAPE 85
D+ IF E
Sbjct 1953 QFDSQAVAVIFCHE 1966
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
Query 1 FAAASTIKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVF--TDIKKPDGERLRPLHA 58
F+ I + R L LF T TLA G+NLPARTV+ T + R +
Sbjct 992 FSNGVAIHHAGLLRSDRLLAEKLFRTATLAWGVNLPARTVIIKGTSVYDSKSGGFRDISV 1051
Query 59 AEYTQMAGRAGRRGLDTCGNVYIF 82
+ Q+ GRAGR DT G+ +
Sbjct 1052 LDVLQIFGRAGRPQYDTRGSAVLI 1075
> cpv:cgd5_2070 SPAC694.02. SKI family SFII helicase
Length=2123
Score = 57.0 bits (136), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 7/72 (9%)
Query 8 KEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAGR 67
+ +E L++ G + ++ +T TLA+G+N+P RT VF + D L PL Y Q +GR
Sbjct 1611 RRAVETLYRMGYLCIIISTRTLALGVNMPCRTTVFVN----DSISLTPLL---YRQASGR 1663
Query 68 AGRRGLDTCGNV 79
AGRRG D G+V
Sbjct 1664 AGRRGYDVQGSV 1675
> sce:YER172C BRR2, PRP44, RSS1, SLT22, SNU246; Brr2p (EC:3.6.1.-);
K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=2163
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 32/72 (44%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query 8 KEMMEILFQRGLIRVLFATETLAVGLNLPARTVVF--TDIKKPDGERLRPLHAAEYTQMA 65
+ + E LF GL++VL T TLA G+NLPA TV+ TD+ P+ L + QM
Sbjct 813 RSLSEDLFADGLLQVLVCTATLAWGVNLPAHTVIIKGTDVYSPEKGSWEQLSPQDVLQML 872
Query 66 GRAGRRGLDTCG 77
GRAGR DT G
Sbjct 873 GRAGRPRYDTFG 884
> cpv:cgd2_2770 U5 small nuclear ribonucleoprotein 200kDA helicase,
Pre-mRNA splicing helicase BRR2 2 (RNA helicase plus Sec63
domain)
Length=2184
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query 5 STIKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGER--LRPLHAAEYT 62
S+ +++ E LF +GLIRVL T TLA G+NLPAR V+ D ++ + L +
Sbjct 647 SSQRKLSEALFSQGLIRVLITTATLAWGVNLPARHVIIKGTNVYDSKKGSFKDLGILDIL 706
Query 63 QMAGRAGRRGLDTCGNVYIFAPEE 86
Q+ GRAGR + G+ Y+ +
Sbjct 707 QIFGRAGRPQFEKLGSAYMITSSD 730
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 6/125 (4%)
Query 8 KEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLH--AAEYTQMA 65
+ ++E LF G+I+++ AT TLA G+N PA + + D + + + + QM
Sbjct 1581 RNLVENLFLNGMIQIVVATSTLAWGVNFPAHFAIIKGTEYFDAKLGQYIDYPITDVLQMV 1640
Query 66 GRAGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSL 125
GR+GR D+ I E + K + + PL S F +S + + +A +SL
Sbjct 1641 GRSGRPQYDSHSVACIMTLE---AKKPFYKRFLYDSLPLESCFGVS-PLIEIFNAEVSSL 1696
Query 126 SIETL 130
SI+++
Sbjct 1697 SIKSI 1701
> cel:Y46G5A.4 hypothetical protein; K12854 pre-mRNA-splicing
helicase BRR2 [EC:3.6.4.13]
Length=2145
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query 10 MMEILFQRGLIRVLFATETLAVGLNLPARTVVF--TDIKKPDGERLRPLHAAEYTQMAGR 67
++E LF I+VLF+T TLA G+NLPA TV+ T I P+ R L A + QM GR
Sbjct 789 LVEDLFADRHIQVLFSTATLAWGVNLPAHTVIIKGTQIYNPEKGRWTELGALDIMQMLGR 848
Query 68 AGRRGLDTCG 77
AGR D G
Sbjct 849 AGRPQYDDRG 858
> ath:AT1G20960 emb1507 (embryo defective 1507); ATP binding /
ATP-dependent helicase/ helicase/ nucleic acid binding / nucleoside-triphosphatase/
nucleotide binding; K12854 pre-mRNA-splicing
helicase BRR2 [EC:3.6.4.13]
Length=2171
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query 8 KEMMEILFQRGLIRVLFATETLAVGLNLPARTVVF--TDIKKPDGERLRPLHAAEYTQMA 65
+E++E LF +G ++VL +T TLA G+NLPA TV+ T + P+ L + QM
Sbjct 818 REIVETLFSQGHVQVLVSTATLAWGVNLPAHTVIIKGTQVYNPEKGAWMELSPLDVMQML 877
Query 66 GRAGRRGLDTCG 77
GRAGR D G
Sbjct 878 GRAGRPQYDQHG 889
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 39/84 (46%), Gaps = 8/84 (9%)
Query 4 ASTIKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEY-- 61
+S +E++ LF+ G I+V + +L G L A VV + DG R ++Y
Sbjct 1652 SSLDQEIVTQLFEAGRIQVCVMSSSLCWGTPLTAHLVVVMGTQYYDG---RENSHSDYPV 1708
Query 62 ---TQMAGRAGRRGLDTCGNVYIF 82
QM GRA R LD G IF
Sbjct 1709 PDLLQMMGRASRPLLDNAGKCVIF 1732
> tpv:TP01_0582 RNA helicase
Length=1764
Score = 55.5 bits (132), Expect = 1e-07, Method: Composition-based stats.
Identities = 31/77 (40%), Positives = 44/77 (57%), Gaps = 2/77 (2%)
Query 8 KEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDG--ERLRPLHAAEYTQMA 65
+E+++ LF G ++VL AT TLA G+NLPA+ V+ + DG +R A + QM
Sbjct 1285 RELVQDLFLNGKLKVLIATSTLAWGVNLPAKIVIIKGTEFYDGRVKRYIDYSATDIIQMV 1344
Query 66 GRAGRRGLDTCGNVYIF 82
GRAGR D Y+F
Sbjct 1345 GRAGRNIYDGEAYAYVF 1361
Score = 49.3 bits (116), Expect = 9e-06, Method: Composition-based stats.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 3/122 (2%)
Query 8 KEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAGR 67
++++E +F+ GL++VL T TLA G+NLPA +V+ R ++ E Q+ GR
Sbjct 437 RDLVEEMFKSGLVKVLVCTSTLAWGVNLPAHSVIIKGTFIGGVGVDRNINNLELNQIMGR 496
Query 68 AGRRGLDTCGNVYIFAPEEVPSPKDLTTMMVERAQPLCSRFRLSYQTLLLLHAAANSLSI 127
AGR D G + + + M ER P+ S+ + + L A S++
Sbjct 497 AGRPQFDVEGKGILLTDHK--NLYSYVRMQTERV-PIESQLHVHLENFLNAEIAIGSINN 553
Query 128 ET 129
+T
Sbjct 554 DT 555
> mmu:320632 Snrnp200, A330064G03Rik, Ascc3l1, BC011390, HELIC2,
KIAA0788, U5-200-KD, U5-200KD; small nuclear ribonucleoprotein
200 (U5) (EC:3.6.4.13); K12854 pre-mRNA-splicing helicase
BRR2 [EC:3.6.4.13]
Length=2136
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query 10 MMEILFQRGLIRVLFATETLAVGLNLPARTVVF--TDIKKPDGERLRPLHAAEYTQMAGR 67
++E LF I+VL +T TLA G+NLPA TV+ T + P+ R L A + QM GR
Sbjct 796 LVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGR 855
Query 68 AGRRGLDTCG 77
AGR DT G
Sbjct 856 AGRPQYDTKG 865
> hsa:23020 SNRNP200, ASCC3L1, BRR2, FLJ11521, HELIC2, RP33, U5-200KD;
small nuclear ribonucleoprotein 200kDa (U5) (EC:3.6.4.13);
K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Length=2136
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query 10 MMEILFQRGLIRVLFATETLAVGLNLPARTVVF--TDIKKPDGERLRPLHAAEYTQMAGR 67
++E LF I+VL +T TLA G+NLPA TV+ T + P+ R L A + QM GR
Sbjct 796 LVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGR 855
Query 68 AGRRGLDTCG 77
AGR DT G
Sbjct 856 AGRPQYDTKG 865
> hsa:652147 u5 small nuclear ribonucleoprotein 200 kDa helicase-like
Length=1700
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query 10 MMEILFQRGLIRVLFATETLAVGLNLPARTVVF--TDIKKPDGERLRPLHAAEYTQMAGR 67
++E LF I+VL +T TLA G+NLPA TV+ T + P+ R L A + QM GR
Sbjct 360 LVEDLFGDKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGR 419
Query 68 AGRRGLDTCG 77
AGR DT G
Sbjct 420 AGRPQYDTKG 429
> tgo:TGME49_116750 helicase, putative
Length=741
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 33/42 (78%), Gaps = 0/42 (0%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKP 48
+KE++E F+RGL+RV TET +VG+NLPA+ V+F+ + KP
Sbjct 597 VKELVEKAFERGLLRVTVCTETFSVGVNLPAKAVIFSSLFKP 638
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 18/26 (69%), Gaps = 0/26 (0%)
Query 53 LRPLHAAEYTQMAGRAGRRGLDTCGN 78
R L AE+ QMAGRAGRRG+D G
Sbjct 716 WRLLSRAEFEQMAGRAGRRGVDQKGG 741
> tpv:TP03_0667 DEAD box RNA helicase (EC:3.6.1.-); K01529 [EC:3.6.1.-]
Length=2359
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query 10 MMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAGRAG 69
+ E L + G + V+ ++++LA G+N+P ++V+F D L PL Y QM+GR G
Sbjct 1759 LTETLLRLGFLNVIISSKSLAFGINVPCKSVLFCG----DNYELTPLM---YKQMSGRCG 1811
Query 70 RRGLDTCGNVYIFA 83
RRG D G+V ++
Sbjct 1812 RRGFDLSGHVIFWS 1825
> tgo:TGME49_094350 DEAD/DEAH box helicase, putative
Length=2434
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 10/85 (11%)
Query 7 IKEMMEILFQRGLIRVLFATETLAVGLNLPARTVVFTDIKKPDGERLRPLHAAEYTQMAG 66
+E ++IL++ G +R+ + LA+G+N+P RT VF D L P + Q G
Sbjct 1910 FREAVDILYRIGYLRICICSNALALGMNMPCRTSVFAG----DSFMLTP---TMFKQSGG 1962
Query 67 RAGRRGLDTCGNVYIFAPEEVPSPK 91
RAGRRG D G + + EVP K
Sbjct 1963 RAGRRGYDAAGYILFW---EVPFSK 1984
Lambda K H
0.324 0.135 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 5623228644
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40