bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_8231_orf1
Length=86
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_018410 60S acidic ribosomal protein P0 (EC:4.2.99.1... 119 2e-27
cpv:cgd4_2260 ribosomal protein PO like protein of the L10 fam... 109 2e-24
tpv:TP01_0294 60S acidic ribosomal protein, P0; K02941 large s... 107 7e-24
bbo:BBOV_IV004540 23.m05776; phosphoriboprotein P0; K02941 lar... 106 2e-23
pfa:PF11_0313 60S ribosomal protein P0; K02941 large subunit r... 105 3e-23
xla:379826 rplp0, MGC53408, arbp; ribosomal protein, large, P0... 97.1 1e-20
hsa:6175 RPLP0, L10E, MGC111226, MGC88175, P0, PRLP0, RPP0; ri... 93.2 2e-19
ath:AT3G11250 60S acidic ribosomal protein P0 (RPP0C); K02941 ... 92.4 3e-19
ath:AT3G09200 60S acidic ribosomal protein P0 (RPP0B); K02941 ... 92.4 3e-19
mmu:11837 Rplp0, 36B4, Arbp, MGC107165, MGC107166; ribosomal p... 92.0 4e-19
dre:58101 rplp0, arp, fb04a12, wu:fb15a08, wu:fk48c12; ribosom... 91.3 7e-19
mmu:667618 Gm8730, EG667618; predicted pseudogene 8730 90.9
ath:AT2G40010 60S acidic ribosomal protein P0 (RPP0A); K02941 ... 87.8 8e-18
sce:YLR340W RPP0, RPL10E; P0; L10E; A0; K02941 large subunit r... 86.7 2e-17
cel:F25H2.10 rpa-0; Replication Protein A homolog family membe... 84.3 8e-17
sce:YKL009W MRT4; Mrt4p; K14815 mRNA turnover protein 4 31.6
cel:F43E2.11 hypothetical protein 30.4 1.3
cel:F10E7.5 hypothetical protein; K14815 mRNA turnover protein 4 29.3
cel:F38H4.4 hypothetical protein 28.5 5.0
> tgo:TGME49_018410 60S acidic ribosomal protein P0 (EC:4.2.99.18);
K02941 large subunit ribosomal protein LP0
Length=314
Score = 119 bits (298), Expect = 2e-27, Method: Composition-based stats.
Identities = 57/82 (69%), Positives = 67/82 (81%), Gaps = 0/82 (0%)
Query 5 TQTDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTYGL 64
T DPGST FFQALGI+TKIVKGQIEIQ V LI+ G++V+ASAATLL KL++KPF YGL
Sbjct 129 TGMDPGSTSFFQALGIATKIVKGQIEIQNEVHLIKEGDKVTASAATLLQKLNIKPFEYGL 188
Query 65 KVEHVYDNGSVYSGWGLDITVE 86
++HVYD+GSVY LDIT E
Sbjct 189 AIQHVYDDGSVYKASVLDITDE 210
> cpv:cgd4_2260 ribosomal protein PO like protein of the L10 family
; K02941 large subunit ribosomal protein LP0
Length=318
Score = 109 bits (273), Expect = 2e-24, Method: Composition-based stats.
Identities = 53/83 (63%), Positives = 65/83 (78%), Gaps = 0/83 (0%)
Query 4 STQTDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTYG 63
+T DP T FFQALGI+TKIVKGQ+EIQ V LI G++V+AS A LL KL++KPF+YG
Sbjct 135 ATGLDPSQTSFFQALGIATKIVKGQVEIQSDVNLIDEGKKVTASQAVLLQKLNIKPFSYG 194
Query 64 LKVEHVYDNGSVYSGWGLDITVE 86
LKV ++YD+GSVYS LDIT E
Sbjct 195 LKVNNIYDHGSVYSSSVLDITSE 217
> tpv:TP01_0294 60S acidic ribosomal protein, P0; K02941 large
subunit ribosomal protein LP0
Length=321
Score = 107 bits (268), Expect = 7e-24, Method: Composition-based stats.
Identities = 52/83 (62%), Positives = 65/83 (78%), Gaps = 0/83 (0%)
Query 4 STQTDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTYG 63
ST DP T FFQALGISTKIVKGQIEIQ V LI++ ++V+AS ATLL KL++KPF+YG
Sbjct 136 STGLDPSQTSFFQALGISTKIVKGQIEIQNEVHLIKKDDKVTASGATLLQKLNIKPFSYG 195
Query 64 LKVEHVYDNGSVYSGWGLDITVE 86
LKVE +YD+G++ LD+T E
Sbjct 196 LKVEKIYDSGAISDASVLDVTDE 218
> bbo:BBOV_IV004540 23.m05776; phosphoriboprotein P0; K02941 large
subunit ribosomal protein LP0
Length=312
Score = 106 bits (264), Expect = 2e-23, Method: Composition-based stats.
Identities = 51/81 (62%), Positives = 61/81 (75%), Gaps = 0/81 (0%)
Query 4 STQTDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTYG 63
+T DP T FFQALGISTKIVKGQIEIQ V LI+ +RV+AS+ATLL KL++KPF YG
Sbjct 127 ATGMDPSQTSFFQALGISTKIVKGQIEIQNDVHLIKVNDRVTASSATLLQKLNMKPFAYG 186
Query 64 LKVEHVYDNGSVYSGWGLDIT 84
LK+E YD+G + LDIT
Sbjct 187 LKIEKFYDSGHLVEASALDIT 207
> pfa:PF11_0313 60S ribosomal protein P0; K02941 large subunit
ribosomal protein LP0
Length=316
Score = 105 bits (263), Expect = 3e-23, Method: Composition-based stats.
Identities = 51/82 (62%), Positives = 64/82 (78%), Gaps = 0/82 (0%)
Query 5 TQTDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTYGL 64
T DP T FFQ+LGISTKIVKGQIEIQ+ V LI++GE+V+AS+ATLL K ++KPF+YG+
Sbjct 128 TGMDPSHTSFFQSLGISTKIVKGQIEIQEHVHLIKQGEKVTASSATLLQKFNMKPFSYGV 187
Query 65 KVEHVYDNGSVYSGWGLDITVE 86
V VYD+G +Y LDIT E
Sbjct 188 DVRTVYDDGVIYDAKVLDITDE 209
> xla:379826 rplp0, MGC53408, arbp; ribosomal protein, large,
P0; K02941 large subunit ribosomal protein LP0
Length=315
Score = 97.1 bits (240), Expect = 1e-20, Method: Composition-based stats.
Identities = 48/84 (57%), Positives = 62/84 (73%), Gaps = 0/84 (0%)
Query 3 RSTQTDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTY 62
++T P T FFQALGI+TKI +G IEI VQLI+ G++V AS ATLL+ L++ PF+Y
Sbjct 126 QNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSY 185
Query 63 GLKVEHVYDNGSVYSGWGLDITVE 86
GL ++ VYDNGS+YS LDIT E
Sbjct 186 GLIIQQVYDNGSIYSPEVLDITEE 209
> hsa:6175 RPLP0, L10E, MGC111226, MGC88175, P0, PRLP0, RPP0;
ribosomal protein, large, P0; K02941 large subunit ribosomal
protein LP0
Length=317
Score = 93.2 bits (230), Expect = 2e-19, Method: Composition-based stats.
Identities = 45/84 (53%), Positives = 62/84 (73%), Gaps = 0/84 (0%)
Query 3 RSTQTDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTY 62
++T P T FFQALGI+TKI +G IEI VQLI+ G++V AS ATLL+ L++ PF++
Sbjct 126 QNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSF 185
Query 63 GLKVEHVYDNGSVYSGWGLDITVE 86
GL ++ V+DNGS+Y+ LDIT E
Sbjct 186 GLVIQQVFDNGSIYNPEVLDITEE 209
> ath:AT3G11250 60S acidic ribosomal protein P0 (RPP0C); K02941
large subunit ribosomal protein LP0
Length=323
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 58/81 (71%), Gaps = 0/81 (0%)
Query 4 STQTDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTYG 63
+T DP T FFQ L I TKI KG +EI V+LI++G++V +S A LL KL ++PF+YG
Sbjct 129 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYG 188
Query 64 LKVEHVYDNGSVYSGWGLDIT 84
L V+ VYDNGSV+S LD+T
Sbjct 189 LVVQSVYDNGSVFSPEVLDLT 209
> ath:AT3G09200 60S acidic ribosomal protein P0 (RPP0B); K02941
large subunit ribosomal protein LP0
Length=287
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 44/81 (54%), Positives = 58/81 (71%), Gaps = 0/81 (0%)
Query 4 STQTDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTYG 63
+T DP T FFQ L I TKI KG +EI V+LI++G++V +S A LL KL ++PF+YG
Sbjct 96 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSSEAALLAKLGIRPFSYG 155
Query 64 LKVEHVYDNGSVYSGWGLDIT 84
L V+ VYDNGSV+S LD+T
Sbjct 156 LVVQSVYDNGSVFSPEVLDLT 176
> mmu:11837 Rplp0, 36B4, Arbp, MGC107165, MGC107166; ribosomal
protein, large, P0; K02941 large subunit ribosomal protein
LP0
Length=317
Score = 92.0 bits (227), Expect = 4e-19, Method: Composition-based stats.
Identities = 44/82 (53%), Positives = 61/82 (74%), Gaps = 0/82 (0%)
Query 3 RSTQTDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTY 62
++T P T FFQALGI+TKI +G IEI VQLI+ G++V AS ATLL+ L++ PF++
Sbjct 126 QNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSF 185
Query 63 GLKVEHVYDNGSVYSGWGLDIT 84
GL ++ V+DNGS+Y+ LDIT
Sbjct 186 GLIIQQVFDNGSIYNPEVLDIT 207
> dre:58101 rplp0, arp, fb04a12, wu:fb15a08, wu:fk48c12; ribosomal
protein, large, P0; K02941 large subunit ribosomal protein
LP0
Length=319
Score = 91.3 bits (225), Expect = 7e-19, Method: Composition-based stats.
Identities = 48/85 (56%), Positives = 61/85 (71%), Gaps = 3/85 (3%)
Query 3 RSTQTDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATL---LHKLSVKP 59
++T P T FFQALGI+TKI +G IEI VQLI+ G++V AS ATL L+ L++ P
Sbjct 126 QNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKPGDKVGASEATLLNMLNMLNISP 185
Query 60 FTYGLKVEHVYDNGSVYSGWGLDIT 84
F+YGL ++ VYDNGSVYS LDIT
Sbjct 186 FSYGLIIQQVYDNGSVYSPEVLDIT 210
> mmu:667618 Gm8730, EG667618; predicted pseudogene 8730
Length=317
Score = 90.9 bits (224), Expect = 8e-19, Method: Composition-based stats.
Identities = 44/82 (53%), Positives = 60/82 (73%), Gaps = 0/82 (0%)
Query 3 RSTQTDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTY 62
++T P T FFQALGI+TKI G IEI VQLI+ G++V AS ATLL+ L++ PF++
Sbjct 126 QNTGLGPEKTSFFQALGITTKISSGTIEILSDVQLIKTGDKVRASEATLLNMLNISPFSF 185
Query 63 GLKVEHVYDNGSVYSGWGLDIT 84
GL ++ V+DNGS+Y+ LDIT
Sbjct 186 GLIIQQVFDNGSIYNPEVLDIT 207
> ath:AT2G40010 60S acidic ribosomal protein P0 (RPP0A); K02941
large subunit ribosomal protein LP0
Length=317
Score = 87.8 bits (216), Expect = 8e-18, Method: Composition-based stats.
Identities = 43/81 (53%), Positives = 58/81 (71%), Gaps = 0/81 (0%)
Query 4 STQTDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTYG 63
+T DP T FFQ L I TKI KG +EI V+LI++G++V +S A LL KL ++PF+YG
Sbjct 130 NTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSEAALLAKLGIRPFSYG 189
Query 64 LKVEHVYDNGSVYSGWGLDIT 84
L VE VYDNGSV++ L++T
Sbjct 190 LVVESVYDNGSVFNPEVLNLT 210
> sce:YLR340W RPP0, RPL10E; P0; L10E; A0; K02941 large subunit
ribosomal protein LP0
Length=312
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 56/83 (67%), Gaps = 0/83 (0%)
Query 4 STQTDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTYG 63
+T +PG T FFQALG+ TKI +G IEI V+++ G +V S A+LL+ L++ PFT+G
Sbjct 125 NTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFG 184
Query 64 LKVEHVYDNGSVYSGWGLDITVE 86
L V VYDNG V+ LDIT E
Sbjct 185 LTVVQVYDNGQVFPSSILDITDE 207
> cel:F25H2.10 rpa-0; Replication Protein A homolog family member
(rpa-0); K02941 large subunit ribosomal protein LP0
Length=312
Score = 84.3 bits (207), Expect = 8e-17, Method: Composition-based stats.
Identities = 42/84 (50%), Positives = 56/84 (66%), Gaps = 0/84 (0%)
Query 3 RSTQTDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTY 62
++T P T FFQAL I TKI +G IEI V LI+ G++V AS + LL+ L V PF+Y
Sbjct 126 QNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSY 185
Query 63 GLKVEHVYDNGSVYSGWGLDITVE 86
GL V VYD+G++Y+ LD+T E
Sbjct 186 GLVVRQVYDDGTLYTPEVLDMTTE 209
> sce:YKL009W MRT4; Mrt4p; K14815 mRNA turnover protein 4
Length=236
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 0/55 (0%)
Query 20 ISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTYGLKVEHVYDNGS 74
I TKI G+I I + GE++ A +L + + + +KV YDN S
Sbjct 171 IPTKIKAGKITIDSPYLVCTEGEKLDVRQALILKQFGIAASEFKVKVSAYYDNDS 225
> cel:F43E2.11 hypothetical protein
Length=165
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query 10 GSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATL 51
GSTGFF ++ + G I QQA +IR ER A+AAT+
Sbjct 12 GSTGFF----VAHFMCAGFINQQQAEIIIRVPERPVAAAATM 49
> cel:F10E7.5 hypothetical protein; K14815 mRNA turnover protein
4
Length=220
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 0/43 (0%)
Query 16 QALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVK 58
+ LG+ TK+ KG I + Q ++ + GE ++ A +L VK
Sbjct 155 RKLGLPTKLDKGVITLYQQFEVCKEGEPLTVEQAKILKHFEVK 197
> cel:F38H4.4 hypothetical protein
Length=501
Score = 28.5 bits (62), Expect = 5.0, Method: Composition-based stats.
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query 10 GSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTYGLKVEHV 69
G+ F+ +S + +++ + ++++R G R+ A L+ F Y L EH+
Sbjct 404 GTFALFETAHLSLHSEQATLDLVKCLEMVRNG-RIHAC-----QNLTQFSFVYTLLAEHI 457
Query 70 YDNG 73
DNG
Sbjct 458 LDNG 461
Lambda K H
0.317 0.133 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2030857360
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40