bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_8253_orf1
Length=101
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_101390 ribosome biogenesis protein BOP1, putative (... 134 6e-32
ath:AT2G40360 transducin family protein / WD-40 repeat family ... 92.0 4e-19
sce:YMR049C ERB1; Constituent of 66S pre-ribosomal particles, ... 90.9 9e-19
dre:777627 bop1, id:ibd1283, si:ch211-251g8.2, si:ch211-251g8.... 89.0 3e-18
xla:379542 bop1-a, MGC68939; ribosome biogenesis protein bop1-... 89.0 3e-18
mmu:12181 Bop1, AU020183, AW146150, D18861, Erb1p, Kiaa0124, m... 88.6 4e-18
xla:380050 bop1, MGC52658, bop1-B; block of proliferation 1; K... 87.4 9e-18
hsa:23246 BOP1, KIAA0124; block of proliferation 1; K14824 rib... 85.9 3e-17
cpv:cgd2_3680 eukaryotic ribosome biogenesis; Erb1p ; K14824 r... 78.6 4e-15
cel:Y48B6A.1 hypothetical protein; K14824 ribosome biogenesis ... 65.5 4e-11
bbo:BBOV_III002000 17.m07195; BOP1NT (NUC169) domain containin... 63.5 2e-10
pfa:PF14_0055 BOP1-like protein, putative; K14824 ribosome bio... 59.7 2e-09
xla:399199 pafah1b1, lis2, mdcr, mds, pafah, pafah1b1-b; plate... 38.1 0.008
mmu:18472 Pafah1b1, LIS-1, Lis1, MGC25297, MMS10-U, Mdsh, Ms10... 38.1 0.008
hsa:5048 PAFAH1B1, LIS1, LIS2, MDCR, MDS, PAFAH; platelet-acti... 38.1 0.008
dre:556760 wdr69, si:dkey-223n17.5, zgc:153626, zgc:153780; WD... 37.7 0.010
dre:394246 pafah1b1a; platelet-activating factor acetylhydrola... 37.7 0.010
ath:AT3G15980 coatomer protein complex, subunit beta 2 (beta p... 36.6 0.020
ath:AT1G52360 coatomer protein complex, subunit beta 2 (beta p... 36.6 0.020
xla:444112 wdr89, MGC80446; WD repeat domain 89 35.4
dre:394247 pafah1b1b, Lis1a; platelet-activating factor acetyl... 35.4 0.045
cel:F38E11.5 hypothetical protein 35.4 0.047
cpv:cgd7_5010 coatomer complex beta 35.0 0.059
tgo:TGME49_043740 flagellar WD-repeat protein PF20, putative (... 34.3 0.099
bbo:BBOV_II006880 18.m10036; WD domain/ mitotic checkpoint pro... 34.3 0.11
tgo:TGME49_040650 coatomer alpha subunit, putative (EC:2.7.11.... 33.1 0.22
hsa:164781 WDR69, FLJ25955; WD repeat domain 69 33.1
ath:AT3G50590 nucleotide binding 33.1 0.25
cel:T03F6.5 lis-1; LIS-1 (human lissencephaly gene) related fa... 32.7 0.28
pfa:PFE0540w WD-repeat protein, putative 32.3 0.33
ath:AT4G04940 transducin family protein / WD-40 repeat family ... 32.3 0.36
xla:379913 copb2, MGC53629, wu:fc55e05; coatomer protein compl... 32.3 0.37
mmu:50797 Copb2, AI256832; coatomer protein complex, subunit b... 32.3 0.37
hsa:9276 COPB2, beta'-COP; coatomer protein complex, subunit b... 32.3 0.37
bbo:BBOV_IV005340 23.m06217; WD domain, G-beta repeat containi... 32.3 0.41
tgo:TGME49_110860 hypothetical protein ; K12857 Prp8 binding p... 32.0 0.47
mmu:71227 Wdr69, 4930563E19Rik, 4933429D11Rik; WD repeat domai... 32.0 0.50
cpv:cgd4_900 WD repeat containing protein 32.0 0.50
sce:YGL137W SEC27; Essential beta'-coat protein of the COPI co... 32.0 0.52
cel:Y32H12A.8 hypothetical protein 32.0 0.52
xla:380357 wdr24, MGC47001, MGC53421; WD repeat domain 24 32.0
dre:114454 copb2, sb:cb121, wu:fb30f06; coatomer protein compl... 31.6 0.63
tgo:TGME49_010390 WD domain, G-beta repeat-containing protein 31.2 0.75
dre:100333985 RACK1 (mammalian Receptor of Activated C Kinase)... 31.2 0.77
dre:562780 strn4; striatin, calmodulin binding protein 4 31.2
bbo:BBOV_IV005890 23.m06099; coatomer beta subunit 30.8 0.96
hsa:253769 WDR27, MGC43690; WD repeat domain 27 30.8
pfa:PFF0330w coatomer alpha subunit, putative 30.8 1.1
mmu:102162 Taf5l, 1110005N04Rik, AI849020; TAF5-like RNA polym... 30.8 1.2
xla:446524 taf5l, MGC80243; TAF5-like RNA polymerase II, p300/... 30.8 1.2
> tgo:TGME49_101390 ribosome biogenesis protein BOP1, putative
(EC:2.7.11.7); K14824 ribosome biogenesis protein ERB1
Length=1035
Score = 134 bits (338), Expect = 6e-32, Method: Composition-based stats.
Identities = 59/100 (59%), Positives = 73/100 (73%), Gaps = 0/100 (0%)
Query 1 FDLDLSLRVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVP 60
FDL+LS RVYK+ R HK AIT C H + PLM +AS DGTVQI++ +V++DLITNPLIVP
Sbjct 935 FDLELSSRVYKIMRSHKGAITCACLHPSFPLMCTASADGTVQIYHFKVFNDLITNPLIVP 994
Query 61 LKTLKVCKPLAAKEGVSCCCFHPQLPWLFTADLGGGCSLW 100
++TL+V + GV CC +HP PWL TAD G CSLW
Sbjct 995 VRTLRVVEEPQKNGGVLCCMWHPTQPWLVTADRSGQCSLW 1034
> ath:AT2G40360 transducin family protein / WD-40 repeat family
protein; K14824 ribosome biogenesis protein ERB1
Length=753
Score = 92.0 bits (227), Expect = 4e-19, Method: Composition-based stats.
Identities = 46/101 (45%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query 1 FDLDLSLRVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVP 60
FD+DLS + YK + H + IT H++ PL AS S D T +F+ VY+DL NPLIVP
Sbjct 655 FDMDLSSKPYKTLKNHPKDITNVAVHRSYPLFASCSEDSTAYVFHGMVYNDLNQNPLIVP 714
Query 61 LKTLKVCKPLAAKEGVSCCCFHPQLPWLFTADLGGGCSLWC 101
L+ L + ++K GV C FHP+ PWLFTA L+C
Sbjct 715 LEIL---RGHSSKGGVLDCKFHPRQPWLFTAGADSIIKLYC 752
> sce:YMR049C ERB1; Constituent of 66S pre-ribosomal particles,
forms a complex with Nop7p and Ytm1p that is required for
maturation of the large ribosomal subunit; required for maturation
of the 25S and 5.8S ribosomal RNAs; homologous to mammalian
Bop1; K14824 ribosome biogenesis protein ERB1
Length=807
Score = 90.9 bits (224), Expect = 9e-19, Method: Composition-based stats.
Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query 2 DLDLSLRVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVPL 61
DLDL+ YK R H++A+ FHK LPL +SA+ DGT+ +F+ VYDD++ NP+IVPL
Sbjct 708 DLDLASTPYKTLRYHEKAVRSVNFHKKLPLFSSAADDGTIHVFHATVYDDMMKNPMIVPL 767
Query 62 KTL---KVCKPLAAKEGVSCCCFHPQLPWLFTADLGGGCSLW 100
K L KV L GV +HP+ WLF+A LW
Sbjct 768 KKLTGHKVINSL----GVLDAIWHPREAWLFSAGADNTARLW 805
> dre:777627 bop1, id:ibd1283, si:ch211-251g8.2, si:ch211-251g8.4,
zgc:154135; block of proliferation 1; K14824 ribosome biogenesis
protein ERB1
Length=777
Score = 89.0 bits (219), Expect = 3e-18, Method: Composition-based stats.
Identities = 44/91 (48%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query 1 FDLDLSLRVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVP 60
FDLDLS + YKV R HK+A+ FH PL+AS S DG+V + + VY+DL+ NPLIVP
Sbjct 678 FDLDLSTKPYKVLRHHKKALRSVSFHSHYPLLASGSDDGSVIVCHGMVYNDLLQNPLIVP 737
Query 61 LKTLKVCKPLAAKEGVSCCCFHPQLPWLFTA 91
+K LK + GV FHP PW+F++
Sbjct 738 VKVLK-GHSITHDLGVLDVTFHPTQPWVFSS 767
> xla:379542 bop1-a, MGC68939; ribosome biogenesis protein bop1-A;
K14824 ribosome biogenesis protein ERB1
Length=728
Score = 89.0 bits (219), Expect = 3e-18, Method: Composition-based stats.
Identities = 43/91 (47%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query 1 FDLDLSLRVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVP 60
FD+DLS + YKV R HK+A+ FHK+ PL AS S DG+V + + VY+DL+ NPLIVP
Sbjct 629 FDMDLSTKPYKVLRHHKKALRAVSFHKSYPLFASGSDDGSVIVCHGMVYNDLLQNPLIVP 688
Query 61 LKTLKVCKPLAAKEGVSCCCFHPQLPWLFTA 91
+K L+ + GV FHP PW+F++
Sbjct 689 VKVLR-GHAIHRDLGVLDVTFHPTQPWVFSS 718
> mmu:12181 Bop1, AU020183, AW146150, D18861, Erb1p, Kiaa0124,
mKIAA0124; block of proliferation 1; K14824 ribosome biogenesis
protein ERB1
Length=732
Score = 88.6 bits (218), Expect = 4e-18, Method: Composition-based stats.
Identities = 46/100 (46%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query 1 FDLDLSLRVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVP 60
FDLDLS + YKV R HK+A+ FH PL AS S DG+V + + VY+DL+ NPL+VP
Sbjct 633 FDLDLSTKPYKVLRHHKKALRAVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVP 692
Query 61 LKTLKVCKPLAAKEGVSCCCFHPQLPWLFTADLGGGCSLW 100
+K LK L GV FHP PW+F++ G L+
Sbjct 693 VKVLK-GHTLTRDLGVLDVAFHPTQPWVFSSGADGTIRLF 731
> xla:380050 bop1, MGC52658, bop1-B; block of proliferation 1;
K14824 ribosome biogenesis protein ERB1
Length=728
Score = 87.4 bits (215), Expect = 9e-18, Method: Composition-based stats.
Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query 1 FDLDLSLRVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVP 60
FD+DLS + YKV R HK+A+ FHK+ PL AS S D +V + + VY+DL+ NPLIVP
Sbjct 629 FDMDLSTKPYKVLRHHKKALRAVSFHKSYPLFASGSDDASVIVCHGMVYNDLLQNPLIVP 688
Query 61 LKTLKVCKPLAAKEGVSCCCFHPQLPWLFTADLGGGCSLW 100
+K L+ + GV FHP PW+F++ G L+
Sbjct 689 VKVLR-GHAIHRDLGVLDVMFHPTQPWVFSSGADGTIRLF 727
> hsa:23246 BOP1, KIAA0124; block of proliferation 1; K14824 ribosome
biogenesis protein ERB1
Length=746
Score = 85.9 bits (211), Expect = 3e-17, Method: Composition-based stats.
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 1/100 (1%)
Query 1 FDLDLSLRVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVP 60
FDLDLS + Y++ R HK+A+ FH PL AS S DG+V + + VY+DL+ NPL+VP
Sbjct 647 FDLDLSTKPYRMLRHHKKALRAVAFHPRYPLFASGSDDGSVIVCHGMVYNDLLQNPLLVP 706
Query 61 LKTLKVCKPLAAKEGVSCCCFHPQLPWLFTADLGGGCSLW 100
+K LK L GV FHP PW+F++ G L+
Sbjct 707 VKVLK-GHVLTRDLGVLDVIFHPTQPWVFSSGADGTVRLF 745
> cpv:cgd2_3680 eukaryotic ribosome biogenesis; Erb1p ; K14824
ribosome biogenesis protein ERB1
Length=669
Score = 78.6 bits (192), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 5/93 (5%)
Query 1 FDLDLSLRVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVP 60
FDLDL YK+ R + AI K FH+ ++ SAS +GT+ +F+CR+ DL+++P+ VP
Sbjct 570 FDLDLGNTPYKLLRYSESAIKKVQFHQGKSMVFSASKNGTINVFHCRMPTDLMSDPVFVP 629
Query 61 LKTLKVCKPLAAKEGVSCCCFHPQLPWLFTADL 93
LK +K +S +HP+ PW+FTA +
Sbjct 630 LKVIK-----GELSFISSAIWHPRQPWIFTAGI 657
> cel:Y48B6A.1 hypothetical protein; K14824 ribosome biogenesis
protein ERB1
Length=674
Score = 65.5 bits (158), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 0/99 (0%)
Query 2 DLDLSLRVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVPL 61
DL + + +K + H A+ +HK PL+A+ S DGT ++Y R+Y D + + + P+
Sbjct 574 DLQMGNKPWKKLKHHTAAVRSVAYHKKYPLLATVSDDGTAMVYYARIYTDFVKDNELYPV 633
Query 62 KTLKVCKPLAAKEGVSCCCFHPQLPWLFTADLGGGCSLW 100
K L+ + + +HP PWL TA G +L+
Sbjct 634 KRLRAHEKTPNDLCMLHTTWHPTQPWLITAGADGTIALF 672
> bbo:BBOV_III002000 17.m07195; BOP1NT (NUC169) domain containing
protein; K14824 ribosome biogenesis protein ERB1
Length=689
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 7/96 (7%)
Query 1 FDLDLSLRVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVP 60
FDL++ YK F+ + I FH++LPL+ AS +G + + + +V DL P+IVP
Sbjct 597 FDLNVGSFPYKKFQFQEGRIVHVEFHRSLPLLMIASANGVIHLIHVKVPTDLSQEPVIVP 656
Query 61 LKTLKVCKPLAAKEGVSCCCFHPQLPWLFTADLGGG 96
L+ L++ GV+ +H + PW++T+ L G
Sbjct 657 LRDLRM-------SGVTHAHWHKKEPWIYTSGLDCG 685
> pfa:PF14_0055 BOP1-like protein, putative; K14824 ribosome biogenesis
protein ERB1
Length=966
Score = 59.7 bits (143), Expect = 2e-09, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 6/90 (6%)
Query 1 FDLDLSLRVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVP 60
FDLDLS YK F + + + K FHK+ L S +G + +FY + + D ITNP+++P
Sbjct 872 FDLDLSCNPYKKFHLQECPLKKVQFHKSYNLFYSLGDNGKINLFYSKFFQDYITNPVLLP 931
Query 61 LKTLKVCKPLAAKEGVSCCCFHPQLPWLFT 90
+K ++ + + + + PW FT
Sbjct 932 IKE------ISNESKIVDMVWSEKKPWFFT 955
> xla:399199 pafah1b1, lis2, mdcr, mds, pafah, pafah1b1-b; platelet-activating
factor acetylhydrolase 1b, regulatory subunit
1 (45kDa) (EC:3.1.1.47); K01062 1-alkyl-2-acetylglycerophosphocholine
esterase [EC:3.1.1.47]
Length=410
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 0/40 (0%)
Query 8 RVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCR 47
R K H+ +T FHKT P + + S+D TV+++ CR
Sbjct 371 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 29.3 bits (64), Expect = 3.0, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIF 44
H+ +T+ FH +M +AS D T++++
Sbjct 107 HRSPVTRVIFHPVFSVMVTASEDATIKVW 135
> mmu:18472 Pafah1b1, LIS-1, Lis1, MGC25297, MMS10-U, Mdsh, Ms10u,
Pafaha; platelet-activating factor acetylhydrolase, isoform
1b, subunit 1 (EC:3.1.1.47); K01062 1-alkyl-2-acetylglycerophosphocholine
esterase [EC:3.1.1.47]
Length=410
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 0/40 (0%)
Query 8 RVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCR 47
R K H+ +T FHKT P + + S+D TV+++ CR
Sbjct 371 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIF 44
H+ +T+ FH +M SAS D T++++
Sbjct 107 HRSPVTRVIFHPVFSVMVSASEDATIKVW 135
> hsa:5048 PAFAH1B1, LIS1, LIS2, MDCR, MDS, PAFAH; platelet-activating
factor acetylhydrolase 1b, regulatory subunit 1 (45kDa)
(EC:3.1.1.47); K01062 1-alkyl-2-acetylglycerophosphocholine
esterase [EC:3.1.1.47]
Length=410
Score = 38.1 bits (87), Expect = 0.008, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 0/40 (0%)
Query 8 RVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCR 47
R K H+ +T FHKT P + + S+D TV+++ CR
Sbjct 371 RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIF 44
H+ +T+ FH +M SAS D T++++
Sbjct 107 HRSPVTRVIFHPVFSVMVSASEDATIKVW 135
> dre:556760 wdr69, si:dkey-223n17.5, zgc:153626, zgc:153780;
WD repeat domain 69
Length=418
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 14/86 (16%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVPLKTLKVCKPLAAKEG 75
H + + CF+ T L+A+AS DGT ++F + L C+ K
Sbjct 302 HNDEVLDVCFNYTGQLIATASADGTSRVFSTDTFQCL--------------CQLEGHKGE 347
Query 76 VSCCCFHPQLPWLFTADLGGGCSLWC 101
+S CF+ Q + TA + +WC
Sbjct 348 ISKVCFNAQGSRVLTASVDKTSRVWC 373
> dre:394246 pafah1b1a; platelet-activating factor acetylhydrolase,
isoform Ib, alpha subunit a; K01062 1-alkyl-2-acetylglycerophosphocholine
esterase [EC:3.1.1.47]
Length=410
Score = 37.7 bits (86), Expect = 0.010, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 0/40 (0%)
Query 8 RVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCR 47
R K H+ +T FHKT P + + S+D TV+++ CR
Sbjct 371 RCTKTLSAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 28.5 bits (62), Expect = 5.0, Method: Composition-based stats.
Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIF 44
H+ +T+ FH ++ SAS D T++++
Sbjct 107 HRSPVTRVIFHPVFSVIVSASEDATIKVW 135
> ath:AT3G15980 coatomer protein complex, subunit beta 2 (beta
prime), putative
Length=918
Score = 36.6 bits (83), Expect = 0.020, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 0/34 (0%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIFYCRVY 49
H ++ CFH LP++ + S DGTV+I++ Y
Sbjct 228 HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY 261
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 0/25 (0%)
Query 76 VSCCCFHPQLPWLFTADLGGGCSLW 100
VS CFHP+LP + T G +W
Sbjct 232 VSAVCFHPELPIIITGSEDGTVRIW 256
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query 4 DLSLRVY--------KVFRVHKEAITKTCFHKTLPLMASASLDGTVQIF 44
D+ +RVY KVF H + I H TLP + S+S D ++++
Sbjct 78 DMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
> ath:AT1G52360 coatomer protein complex, subunit beta 2 (beta
prime), putative
Length=926
Score = 36.6 bits (83), Expect = 0.020, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 0/34 (0%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIFYCRVY 49
H ++ CFH LP++ + S DGTV+I++ Y
Sbjct 228 HTHNVSAVCFHPELPIIITGSEDGTVRIWHATTY 261
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 0/25 (0%)
Query 76 VSCCCFHPQLPWLFTADLGGGCSLW 100
VS CFHP+LP + T G +W
Sbjct 232 VSAVCFHPELPIIITGSEDGTVRIW 256
Score = 29.6 bits (65), Expect = 2.5, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query 4 DLSLRVY--------KVFRVHKEAITKTCFHKTLPLMASASLDGTVQIF 44
D+ +RVY KVF H + I H TLP + S+S D ++++
Sbjct 78 DMYIRVYNYNTMDKVKVFEAHSDYIRCVAVHPTLPYVLSSSDDMLIKLW 126
> xla:444112 wdr89, MGC80446; WD repeat domain 89
Length=383
Score = 35.4 bits (80), Expect = 0.042, Method: Composition-based stats.
Identities = 18/30 (60%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query 16 HKEAITKTCFHKTLPLM-ASASLDGTVQIF 44
H + ITK CFH T P M AS S DG V IF
Sbjct 170 HFDDITKVCFHPTNPSMVASGSTDGLVNIF 199
> dre:394247 pafah1b1b, Lis1a; platelet-activating factor acetylhydrolase,
isoform Ib, alpha subunit b; K01062 1-alkyl-2-acetylglycerophosphocholine
esterase [EC:3.1.1.47]
Length=410
Score = 35.4 bits (80), Expect = 0.045, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 0/40 (0%)
Query 8 RVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCR 47
R K H+ +T FHK P + + S+D TV+++ CR
Sbjct 371 RCMKTLSAHEHFVTSLDFHKASPYVVTGSVDQTVKVWECR 410
Score = 31.6 bits (70), Expect = 0.62, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIF 44
H+ +T+ FH LM SAS D T++++
Sbjct 107 HRSPVTRVIFHPVFSLMVSASEDATIKVW 135
> cel:F38E11.5 hypothetical protein
Length=1000
Score = 35.4 bits (80), Expect = 0.047, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 0/34 (0%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIFYCRVY 49
H + ++ CFH LPL+ + S D TV++++ Y
Sbjct 228 HAQNVSSVCFHPELPLIITGSEDSTVRLWHANTY 261
Score = 30.0 bits (66), Expect = 1.6, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 14/27 (51%), Gaps = 0/27 (0%)
Query 74 EGVSCCCFHPQLPWLFTADLGGGCSLW 100
+ VS CFHP+LP + T LW
Sbjct 230 QNVSSVCFHPELPLIITGSEDSTVRLW 256
> cpv:cgd7_5010 coatomer complex beta
Length=1157
Score = 35.0 bits (79), Expect = 0.059, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 0/39 (0%)
Query 11 KVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCRVY 49
+V H +A+ +H LPL+ S S DGT++I++ Y
Sbjct 237 QVLTGHTKAVRSVIYHNQLPLILSCSEDGTIKIWHSTTY 275
> tgo:TGME49_043740 flagellar WD-repeat protein PF20, putative
(EC:2.7.11.7)
Length=610
Score = 34.3 bits (77), Expect = 0.099, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 14/94 (14%)
Query 7 LRVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVPLKTLKV 66
L+ F H A+ FH L L+AS S DGT +++ +P L V
Sbjct 320 LKCSHAFDAHGAAVVSIVFHPQLELLASTSDDGTWKLWQ-------------MPAAHL-V 365
Query 67 CKPLAAKEGVSCCCFHPQLPWLFTADLGGGCSLW 100
+ + VS HP L TA G LW
Sbjct 366 MSGVGHTDWVSSASLHPYASVLVTASGDGTVKLW 399
> bbo:BBOV_II006880 18.m10036; WD domain/ mitotic checkpoint protein;
K02180 cell cycle arrest protein BUB3
Length=356
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query 20 ITKTCFHKTLPLMASASLDGTVQIFYCRVYDD 51
IT+ CF KT L+AS S D TV+++ +YDD
Sbjct 36 ITRVCFGKTRNLLASTSWDKTVKLY--EIYDD 65
> tgo:TGME49_040650 coatomer alpha subunit, putative (EC:2.7.11.7);
K05236 coatomer protein complex, subunit alpha (xenin)
Length=1300
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 12/79 (15%)
Query 12 VFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVPLKTLKVCKPLA 71
V H+ + FH +LPL+ASA+ D ++++ Y+D K +V
Sbjct 211 VLEGHERGVNWAAFHPSLPLIASAADDRLIKLWR---YND---------SKAWEVDTLRG 258
Query 72 AKEGVSCCCFHPQLPWLFT 90
VSC FHPQ L +
Sbjct 259 HFNNVSCLVFHPQRELLIS 277
> hsa:164781 WDR69, FLJ25955; WD repeat domain 69
Length=415
Score = 33.1 bits (74), Expect = 0.22, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 16/86 (18%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVPLKTLKVCKPLAAKEG 75
H + I +CF T L+A+AS DGT +IF T K L EG
Sbjct 302 HDDEILDSCFDYTGKLIATASADGTARIFSA---------------ATRKCIAKLEGHEG 346
Query 76 -VSCCCFHPQLPWLFTADLGGGCSLW 100
+S F+PQ L T +W
Sbjct 347 EISKISFNPQGNHLLTGSSDKTARIW 372
> ath:AT3G50590 nucleotide binding
Length=1610
Score = 33.1 bits (74), Expect = 0.25, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 10/84 (11%)
Query 17 KEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVPLKTLKVCKPLAAKEGV 76
K+ I H LP++ A +G ++ + Y T L +K + G
Sbjct 156 KKPIVNIACHPRLPVLYVAYAEGLIRAYNIHTYAVHYTLQLDNTIKLI----------GA 205
Query 77 SCCCFHPQLPWLFTADLGGGCSLW 100
S FHP L W+F D G W
Sbjct 206 SSFAFHPTLEWIFVGDRRGTLLAW 229
> cel:T03F6.5 lis-1; LIS-1 (human lissencephaly gene) related
family member (lis-1); K01062 1-alkyl-2-acetylglycerophosphocholine
esterase [EC:3.1.1.47]
Length=404
Score = 32.7 bits (73), Expect = 0.28, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 0/40 (0%)
Query 8 RVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCR 47
R K H+ ++ FH+T P + + S+D + +++ CR
Sbjct 365 RCMKAIEAHEHFVSTVAFHQTSPFVITGSVDMSCKVWECR 404
Score = 28.5 bits (62), Expect = 4.9, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIF 44
H+ IT+ FH +MAS S D T++++
Sbjct 105 HRLPITRVIFHPLWTIMASCSEDATIKVW 133
> pfa:PFE0540w WD-repeat protein, putative
Length=526
Score = 32.3 bits (72), Expect = 0.33, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query 1 FDLDLSLRVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCR 47
FD++ SLR ++ R H +++ FH + SAS+D T+ I+ R
Sbjct 356 FDIN-SLRQRQILRGHVDSVNSVNFHPYFRTLVSASVDKTISIWDMR 401
> ath:AT4G04940 transducin family protein / WD-40 repeat family
protein; K14554 U3 small nucleolar RNA-associated protein
21
Length=910
Score = 32.3 bits (72), Expect = 0.36, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 27/40 (67%), Gaps = 0/40 (0%)
Query 5 LSLRVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIF 44
++L++ + FR H + IT CF + + S+S+DG+++I+
Sbjct 545 VTLKMVREFRGHTDRITDLCFSEDGKWVISSSMDGSLRIW 584
> xla:379913 copb2, MGC53629, wu:fc55e05; coatomer protein complex,
subunit beta 2 (beta prime)
Length=915
Score = 32.3 bits (72), Expect = 0.37, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 0/34 (0%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIFYCRVY 49
H + ++ FH LP++ + S DGTV+I++ Y
Sbjct 228 HAQNVSCVSFHPELPIIITGSEDGTVRIWHSSTY 261
Score = 31.2 bits (69), Expect = 0.77, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 0/27 (0%)
Query 74 EGVSCCCFHPQLPWLFTADLGGGCSLW 100
+ VSC FHP+LP + T G +W
Sbjct 230 QNVSCVSFHPELPIIITGSEDGTVRIW 256
> mmu:50797 Copb2, AI256832; coatomer protein complex, subunit
beta 2 (beta prime)
Length=905
Score = 32.3 bits (72), Expect = 0.37, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 0/34 (0%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIFYCRVY 49
H + ++ FH LP++ + S DGTV+I++ Y
Sbjct 228 HAQNVSCASFHPELPIIITGSEDGTVRIWHSSTY 261
Score = 31.6 bits (70), Expect = 0.69, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 0/27 (0%)
Query 74 EGVSCCCFHPQLPWLFTADLGGGCSLW 100
+ VSC FHP+LP + T G +W
Sbjct 230 QNVSCASFHPELPIIITGSEDGTVRIW 256
> hsa:9276 COPB2, beta'-COP; coatomer protein complex, subunit
beta 2 (beta prime)
Length=906
Score = 32.3 bits (72), Expect = 0.37, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 0/34 (0%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIFYCRVY 49
H + ++ FH LP++ + S DGTV+I++ Y
Sbjct 228 HAQNVSCASFHPELPIIITGSEDGTVRIWHSSTY 261
Score = 31.6 bits (70), Expect = 0.69, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 0/27 (0%)
Query 74 EGVSCCCFHPQLPWLFTADLGGGCSLW 100
+ VSC FHP+LP + T G +W
Sbjct 230 QNVSCASFHPELPIIITGSEDGTVRIW 256
> bbo:BBOV_IV005340 23.m06217; WD domain, G-beta repeat containing
protein; K13111 WD40 repeat-containing protein SMU1
Length=533
Score = 32.3 bits (72), Expect = 0.41, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 0/35 (0%)
Query 13 FRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCR 47
FRVH++ + H ++A+ SLDGT+++ Y R
Sbjct 499 FRVHEKDVIGLAHHPQDAVLATWSLDGTIKLLYPR 533
> tgo:TGME49_110860 hypothetical protein ; K12857 Prp8 binding
protein
Length=367
Score = 32.0 bits (71), Expect = 0.47, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 0/26 (0%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTV 41
H ++ CFH T P++ASAS D TV
Sbjct 336 HSGSVNDVCFHPTEPVIASASSDRTV 361
> mmu:71227 Wdr69, 4930563E19Rik, 4933429D11Rik; WD repeat domain
69
Length=310
Score = 32.0 bits (71), Expect = 0.50, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 16/86 (18%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVPLKTLKVCKPLAAKEG 75
H + I +CF T L+A+AS DGT RVY+ T K L EG
Sbjct 197 HDDEILDSCFDYTGKLIATASADGTA-----RVYN----------ATTRKCVTKLEGHEG 241
Query 76 -VSCCCFHPQLPWLFTADLGGGCSLW 100
+S F+PQ L T +W
Sbjct 242 EISKISFNPQGNRLLTGSSDKTARIW 267
> cpv:cgd4_900 WD repeat containing protein
Length=1042
Score = 32.0 bits (71), Expect = 0.50, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 6/47 (12%)
Query 13 FRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIV 59
F+ HK ITK FH L+ S ++G + I+ DL TN +IV
Sbjct 173 FKAHKSLITKLKFHNKRWLLFSTCVEGFIIIY------DLTTNKIIV 213
> sce:YGL137W SEC27; Essential beta'-coat protein of the COPI
coatomer, involved in ER-to-Golgi and Golgi-to-ER transport;
contains WD40 domains that mediate cargo selective interactions;
45% sequence identity to mammalian beta'-COP
Length=889
Score = 32.0 bits (71), Expect = 0.52, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 0/34 (0%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIFYCRVY 49
H ++ FH TLP++ S S DGT++I+ Y
Sbjct 227 HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
> cel:Y32H12A.8 hypothetical protein
Length=3849
Score = 32.0 bits (71), Expect = 0.52, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 16/101 (15%)
Query 4 DLSLRVYKVFRVHKEAITKTCFHKTLP-LMASASLDGTVQIFYCRVYDD---LITNPLIV 59
++S R VF+ H+ + T +H T P ++ S S D TV+ + RV D+ ++
Sbjct 131 NISRRNKSVFKSHERSATCLDWHATTPYILVSGSRDCTVKSYDMRVKDNHQLTFSDRNCE 190
Query 60 PLKTLKVCKPLAAKEGVSCCCFHPQLPWLFTADLGGGCSLW 100
++ + +CK + + FT D GG LW
Sbjct 191 SIRDVAMCKAPGFDD------------YFFTGDDGGVLRLW 219
> xla:380357 wdr24, MGC47001, MGC53421; WD repeat domain 24
Length=780
Score = 32.0 bits (71), Expect = 0.53, Method: Composition-based stats.
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query 11 KVFRVHKEAITKTCFHKT-LPLMASASLDGTVQIFYCRVYDDLIT 54
++F HK + K CFH T + ++ S S DG ++ F R D + T
Sbjct 109 QLFTEHKRTVNKVCFHPTEVYMLLSGSQDGYMKCFDLRKKDSVST 153
> dre:114454 copb2, sb:cb121, wu:fb30f06; coatomer protein complex,
subunit beta 2
Length=934
Score = 31.6 bits (70), Expect = 0.63, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 0/34 (0%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIFYCRVY 49
H + ++ FH LP++ + S DGTV+I++ Y
Sbjct 228 HAQNVSCVNFHPELPIIITGSEDGTVRIWHSSTY 261
Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 0/27 (0%)
Query 74 EGVSCCCFHPQLPWLFTADLGGGCSLW 100
+ VSC FHP+LP + T G +W
Sbjct 230 QNVSCVNFHPELPIIITGSEDGTVRIW 256
> tgo:TGME49_010390 WD domain, G-beta repeat-containing protein
Length=453
Score = 31.2 bits (69), Expect = 0.75, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query 16 HKEAITKTCFHKTLP-LMASASLDGTVQIFYCR 47
H+ IT F T P L+AS+S DGTV+++ CR
Sbjct 78 HESQITNLSFFSTSPHLLASSSQDGTVRLWDCR 110
> dre:100333985 RACK1 (mammalian Receptor of Activated C Kinase)
homolog family member (rack-1)-like
Length=545
Score = 31.2 bits (69), Expect = 0.77, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 14/94 (14%)
Query 1 FDLDLSLRVYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVP 60
+D+D ++Y E FH ++PL A S G V++F D+ T+ LI
Sbjct 257 WDMDTLQQLYDFVTDDDENPCSVAFHPSMPLFACGSSSGAVRVF------DIQTSSLIAQ 310
Query 61 LKTLKVCKPLAAKEGVSCCCFHPQLPWLFTADLG 94
+ + C V C + P LF+A G
Sbjct 311 HR--QHCG------SVECVIYSPDGQCLFSAGSG 336
> dre:562780 strn4; striatin, calmodulin binding protein 4
Length=765
Score = 31.2 bits (69), Expect = 0.83, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 0/29 (0%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIF 44
H EAI FH + P +ASA D +IF
Sbjct 736 HDEAIHDVAFHPSQPFIASAGADALAKIF 764
Score = 27.7 bits (60), Expect = 8.8, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 0/33 (0%)
Query 12 VFRVHKEAITKTCFHKTLPLMASASLDGTVQIF 44
V H++A+ F +L +AS S DGTV+I+
Sbjct 552 VLSGHEDAVWGLAFSSSLQRLASCSADGTVRIW 584
> bbo:BBOV_IV005890 23.m06099; coatomer beta subunit
Length=873
Score = 30.8 bits (68), Expect = 0.96, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query 4 DLSLRVY--------KVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCRVY 49
D ++RV+ +V R H + +T H LPL+ +A DG V ++ +Y
Sbjct 220 DTTIRVWDYQTKLCLQVLRQHTQPVTCVLHHPRLPLIITAGEDGNVNTWHSTLY 273
Score = 28.5 bits (62), Expect = 4.8, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 0/27 (0%)
Query 73 KEGVSCCCFHPQLPWLFTADLGGGCSL 99
KE V C FH PW+ + G C++
Sbjct 15 KEKVKCVDFHTSEPWILSGLYSGSCTI 41
> hsa:253769 WDR27, MGC43690; WD repeat domain 27
Length=730
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 0/29 (0%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIF 44
H + +T F+ + P +A+A+LDG +Q+F
Sbjct 699 HTDTVTGVAFNPSAPQLATATLDGKLQLF 727
> pfa:PFF0330w coatomer alpha subunit, putative
Length=1512
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 18/87 (20%)
Query 16 HKEAITKTCFHKTLPLMASASLDGTVQIFYCRVYDDLITNPLIVPLKTLKVCKPLAAKEG 75
H + I K FH+ P + SAS D T++I+ + +VC +
Sbjct 92 HLDYIRKVQFHEEYPWILSASDDQTIRIWNWQS----------------RVCIAILTGHN 135
Query 76 --VSCCCFHPQLPWLFTADLGGGCSLW 100
V C FHP L ++ + L +W
Sbjct 136 HYVMCAEFHPNLDYIISCSLDKTLRVW 162
> mmu:102162 Taf5l, 1110005N04Rik, AI849020; TAF5-like RNA polymerase
II, p300/CBP-associated factor (PCAF)-associated factor;
K03130 transcription initiation factor TFIID subunit 5
Length=589
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 0/39 (0%)
Query 9 VYKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIFYCR 47
++K R H ++IT F L+ASAS+D +V+++ R
Sbjct 502 LFKELRGHTDSITSLAFSPDSGLIASASMDNSVRVWDIR 540
> xla:446524 taf5l, MGC80243; TAF5-like RNA polymerase II, p300/CBP-associated
factor (PCAF)-associated factor, 65kDa; K03130
transcription initiation factor TFIID subunit 5
Length=587
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query 10 YKVFRVHKEAITKTCFHKTLPLMASASLDGTVQIF-----YCRVYDDLITNPLI 58
YK R H + I+ F L+ASAS+D +V+++ YC D ++ L+
Sbjct 501 YKELRGHTDNISSLTFSPDSSLIASASMDNSVRVWDIRNSYCNTPSDGSSSELV 554
Lambda K H
0.330 0.143 0.491
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2036602604
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40