bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_8450_orf1 Length=163 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_105010 RNA binding protein, putative ; K12833 pre-m... 143 3e-34 bbo:BBOV_II005820 18.m06483; pre-mRNA branch site protein p14;... 140 1e-33 ath:AT5G12190 RNA recognition motif (RRM)-containing protein; ... 133 3e-31 pfa:PFL1200c splicing factor 3b subunit, putative; K12833 pre-... 132 7e-31 xla:379631 sf3b14, MGC68842; splicing factor 3B, 14 kDa subuni... 131 1e-30 dre:415157 sf3b14, zgc:86708; splicing factor 3B; K12833 pre-m... 129 4e-30 mmu:66055 0610009D07Rik, 6030419K15Rik, AV001342, Sf3b14; RIKE... 129 4e-30 hsa:51639 SF3B14, HSPC175, Ht006, P14, SAP14, SF3B14a; splicin... 129 4e-30 cel:C50D2.5 hypothetical protein; K12833 pre-mRNA branch site ... 117 1e-26 tpv:TP02_0539 hypothetical protein; K12833 pre-mRNA branch sit... 114 1e-25 cpv:cgd3_2310 hypothetical protein ; K12833 pre-mRNA branch si... 100 3e-21 ath:AT2G14870 RNA recognition motif (RRM)-containing protein 98.6 7e-21 ath:AT1G02840 SR1; SR1; RNA binding / nucleic acid binding / n... 55.1 1e-07 tgo:TGME49_121360 RNA recognition motif domain-containing protein 51.2 1e-06 ath:AT4G02430 pre-mRNA splicing factor, putative / SR1 protein... 50.8 2e-06 ath:AT5G07290 AML4; AML4 (ARABIDOPSIS MEI2-LIKE 4); RNA bindin... 49.3 5e-06 sce:YNL004W HRB1, TOM34; Hrb1p 48.9 8e-06 xla:444235 rbm23, MGC80803; RNA binding motif protein 23 48.5 ath:AT2G35410 33 kDa ribonucleoprotein, chloroplast, putative ... 48.1 1e-05 pfa:PF10_0217 pre-mRNA splicing factor, putative 47.4 2e-05 cpv:cgd7_5160 U1 small nuclear ribonucleoprotein A, rrm domain 47.4 2e-05 pfa:PF13_0122 RRM containing cyclophilin (EC:5.2.1.8); K01802 ... 47.4 2e-05 dre:393856 pabpc1b, MGC77608, pabpc1, zgc:77608; poly A bindin... 47.4 2e-05 hsa:80336 PABPC1L, C20orf119, FLJ11840, FLJ30809, FLJ42053, PA... 47.4 2e-05 tpv:TP04_0400 hypothetical protein; K14787 multiple RNA-bindin... 47.0 2e-05 cel:C33H5.12 rsp-6; SR Protein (splicing factor) family member... 47.0 3e-05 bbo:BBOV_II005790 18.m06481; u1 snRNP; K11093 U1 small nuclear... 46.6 3e-05 xla:446310 zcrb1, MGC82154; zinc finger CCHC-type and RNA bind... 46.6 4e-05 xla:444779 MGC81970 protein 46.6 4e-05 dre:767714 ncl, MGC152810, wu:fa12d03, zgc:152810; nucleolin; ... 46.6 4e-05 xla:446785 rbm39, MGC80448, rnpc2; RNA binding motif protein 3... 46.2 4e-05 mmu:268859 Rbfox1, A2bp, A2bp1, Hrnbp1, fox-1; RNA binding pro... 46.2 5e-05 hsa:9584 RBM39, CAPER, CAPERalpha, CC1.3, DKFZp781C0423, FLJ44... 46.2 5e-05 xla:397919 ncl; nucleolin; K11294 nucleolin 46.2 5e-05 pfa:PFL0830w RNA binding protein, putative; K14787 multiple RN... 46.2 5e-05 xla:444284 pabpc4, MGC80927, PABP, ePAB, ePABP; poly(A) bindin... 46.2 5e-05 mmu:170791 Rbm39, 1500012C14Rik, 2310040E03Rik, B330012G18Rik,... 45.8 6e-05 hsa:54715 RBFOX1, A2BP1, FOX-1, FOX1, HRNBP1; RNA binding prot... 45.8 6e-05 hsa:132430 PABPC4L, DKFZp686J06116; poly(A) binding protein, c... 45.8 6e-05 hsa:85437 ZCRB1, MADP-1, MADP1, MGC26805, RBM36, ZCCHC19; zinc... 45.8 6e-05 hsa:55147 RBM23, CAPERbeta, FLJ10482, MGC4458, RNPC4; RNA bind... 45.8 6e-05 dre:406251 rbm39a, rnpc2, zgc:55780; RNA binding motif protein... 45.8 6e-05 bbo:BBOV_III004120 17.m07378; U2 small nuclear ribonucleoprote... 45.8 7e-05 mmu:18459 Pabpc2, PABP, PABP+, Pabp2; poly(A) binding protein,... 45.4 9e-05 sce:YPR112C MRD1; Essential conserved protein that is part of ... 45.1 1e-04 sce:YGR159C NSR1, SHE5; Nsr1p; K11294 nucleolin 45.1 1e-04 ath:AT3G49430 SRp34a; SRp34a (Ser/Arg-rich protein 34a); RNA b... 45.1 1e-04 dre:321035 pabpc4, cb12, sb:cb12; poly(A) binding protein, cyt... 45.1 1e-04 hsa:26986 PABPC1, PAB1, PABP, PABP1, PABPC2, PABPL1; poly(A) b... 44.7 1e-04 tpv:TP01_1201 hypothetical protein 44.7 1e-04 > tgo:TGME49_105010 RNA binding protein, putative ; K12833 pre-mRNA branch site protein p14 Length=156 Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 62/100 (62%), Positives = 81/100 (81%), Gaps = 0/100 (0%) Query 61 LAGRGRPQRLAPEVSRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVV 120 ++ RGRP ++AP++SRI+YVRNLPFKI +ELYD+FGKYG++RQIR+G + TRG+AFVV Sbjct 37 VSTRGRPTKIAPDMSRIIYVRNLPFKITDDELYDIFGKYGAVRQIRKGNTDKTRGSAFVV 96 Query 121 YDDIYDAKAAVDQLSGFNVAGRYLGGAVLQPHKGAAAERC 160 Y+D+ DA+AAVDQLSGFNVAGRYL P K A ++ Sbjct 97 YEDVLDARAAVDQLSGFNVAGRYLIVLYYNPQKAAQRQQM 136 > bbo:BBOV_II005820 18.m06483; pre-mRNA branch site protein p14; K12833 pre-mRNA branch site protein p14 Length=122 Score = 140 bits (354), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 62/86 (72%), Positives = 71/86 (82%), Gaps = 0/86 (0%) Query 66 RPQRLAPEVSRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIY 125 R RL+PEVSRILY+RNLP+KI+ EELYD+FGKYGS+RQIR+G + T GTAFVVYDDIY Sbjct 10 RTMRLSPEVSRILYLRNLPYKISAEELYDIFGKYGSVRQIRKGNTSKTNGTAFVVYDDIY 69 Query 126 DAKAAVDQLSGFNVAGRYLGGAVLQP 151 DAK A+D LSGFNVAGRYL P Sbjct 70 DAKNALDHLSGFNVAGRYLVVLYYNP 95 > ath:AT5G12190 RNA recognition motif (RRM)-containing protein; K12833 pre-mRNA branch site protein p14 Length=124 Score = 133 bits (334), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 59/84 (70%), Positives = 68/84 (80%), Gaps = 0/84 (0%) Query 61 LAGRGRPQRLAPEVSRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVV 120 ++ R RL PEV+R+LYVRNLPF I EE+YD+FGKYG+IRQIR G AT+GTAFVV Sbjct 4 ISLRKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVV 63 Query 121 YDDIYDAKAAVDQLSGFNVAGRYL 144 Y+DIYDAK AVD LSGFNVA RYL Sbjct 64 YEDIYDAKNAVDHLSGFNVANRYL 87 > pfa:PFL1200c splicing factor 3b subunit, putative; K12833 pre-mRNA branch site protein p14 Length=106 Score = 132 bits (331), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 60/88 (68%), Positives = 71/88 (80%), Gaps = 0/88 (0%) Query 66 RPQRLAPEVSRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIY 125 R RL EVSRILYVRNLP+KI+ +ELYD+FGKYG++RQIR+G + T+GT+FVVYDDIY Sbjct 4 RNIRLPAEVSRILYVRNLPYKISADELYDIFGKYGTVRQIRKGNAEGTKGTSFVVYDDIY 63 Query 126 DAKAAVDQLSGFNVAGRYLGGAVLQPHK 153 DAK A+D LSGFNVAGRYL P K Sbjct 64 DAKNALDHLSGFNVAGRYLVVLYYDPVK 91 > xla:379631 sf3b14, MGC68842; splicing factor 3B, 14 kDa subunit; K12833 pre-mRNA branch site protein p14 Length=125 Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 56/85 (65%), Positives = 68/85 (80%), Gaps = 0/85 (0%) Query 69 RLAPEVSRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIYDAK 128 RL PEV+RILY+RNLP+KI GEE+YD+FGKYG IRQIR G +P +RGTA+VVY+DI+DAK Sbjct 12 RLPPEVNRILYIRNLPYKITGEEMYDIFGKYGPIRQIRVGNTPESRGTAYVVYEDIFDAK 71 Query 129 AAVDQLSGFNVAGRYLGGAVLQPHK 153 A D LSGFNV RYL P++ Sbjct 72 NACDHLSGFNVCNRYLVVLYYNPNR 96 > dre:415157 sf3b14, zgc:86708; splicing factor 3B; K12833 pre-mRNA branch site protein p14 Length=125 Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 55/76 (72%), Positives = 64/76 (84%), Gaps = 0/76 (0%) Query 69 RLAPEVSRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIYDAK 128 RL PEV+RILY+RNLP+KI EE+YD+FGKYG IRQIR G +P TRGTA+VVY+DI+DAK Sbjct 12 RLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAK 71 Query 129 AAVDQLSGFNVAGRYL 144 A D LSGFNV RYL Sbjct 72 NACDHLSGFNVCNRYL 87 > mmu:66055 0610009D07Rik, 6030419K15Rik, AV001342, Sf3b14; RIKEN cDNA 0610009D07 gene; K12833 pre-mRNA branch site protein p14 Length=125 Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 55/76 (72%), Positives = 64/76 (84%), Gaps = 0/76 (0%) Query 69 RLAPEVSRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIYDAK 128 RL PEV+RILY+RNLP+KI EE+YD+FGKYG IRQIR G +P TRGTA+VVY+DI+DAK Sbjct 12 RLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAK 71 Query 129 AAVDQLSGFNVAGRYL 144 A D LSGFNV RYL Sbjct 72 NACDHLSGFNVCNRYL 87 > hsa:51639 SF3B14, HSPC175, Ht006, P14, SAP14, SF3B14a; splicing factor 3B, 14 kDa subunit; K12833 pre-mRNA branch site protein p14 Length=125 Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 55/76 (72%), Positives = 64/76 (84%), Gaps = 0/76 (0%) Query 69 RLAPEVSRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIYDAK 128 RL PEV+RILY+RNLP+KI EE+YD+FGKYG IRQIR G +P TRGTA+VVY+DI+DAK Sbjct 12 RLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAK 71 Query 129 AAVDQLSGFNVAGRYL 144 A D LSGFNV RYL Sbjct 72 NACDHLSGFNVCNRYL 87 > cel:C50D2.5 hypothetical protein; K12833 pre-mRNA branch site protein p14 Length=138 Score = 117 bits (294), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 49/81 (60%), Positives = 67/81 (82%), Gaps = 0/81 (0%) Query 64 RGRPQRLAPEVSRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDD 123 + R +L PEV+RILY++NLP+KI EE+Y++FGK+G++RQIR G + TRGTAFVVY+D Sbjct 7 QNRGAKLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYED 66 Query 124 IYDAKAAVDQLSGFNVAGRYL 144 I+DAK A + LSG+NV+ RYL Sbjct 67 IFDAKTACEHLSGYNVSNRYL 87 > tpv:TP02_0539 hypothetical protein; K12833 pre-mRNA branch site protein p14 Length=134 Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 56/97 (57%), Positives = 65/97 (67%), Gaps = 10/97 (10%) Query 67 PQRLAPEVSRILYVR----------NLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGT 116 P EV R + +R NLP+KI EELYD+FGKYGS+RQIR+G S T+GT Sbjct 13 PTTFGLEVQRAIQLRHGGSSKTSNLNLPYKITSEELYDIFGKYGSVRQIRKGNSATTKGT 72 Query 117 AFVVYDDIYDAKAAVDQLSGFNVAGRYLGGAVLQPHK 153 AFVVYDDI+DAK A+D LSGFNVAGRYL P K Sbjct 73 AFVVYDDIFDAKNALDHLSGFNVAGRYLVVLYYNPAK 109 > cpv:cgd3_2310 hypothetical protein ; K12833 pre-mRNA branch site protein p14 Length=86 Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 43/71 (60%), Positives = 58/71 (81%), Gaps = 0/71 (0%) Query 75 SRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIYDAKAAVDQL 134 S I+Y+R LP+ I+ +LYD+FG++G+IRQIRRG T+GTAFVVYD+I DAK+A+ QL Sbjct 15 SSIIYLRQLPYDISSTDLYDIFGRHGTIRQIRRGVGEDTKGTAFVVYDEIEDAKSALKQL 74 Query 135 SGFNVAGRYLG 145 SGF V+GRY+ Sbjct 75 SGFQVSGRYVN 85 > ath:AT2G14870 RNA recognition motif (RRM)-containing protein Length=101 Score = 98.6 bits (244), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 42/66 (63%), Positives = 52/66 (78%), Gaps = 0/66 (0%) Query 69 RLAPEVSRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIYDAK 128 RL PEV+R+LY+ NLPF I E+ YD+FG+Y +IRQ+R G T+GTAFVVY+DIYDAK Sbjct 13 RLPPEVTRLLYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTKGTAFVVYEDIYDAK 72 Query 129 AAVDQL 134 AVD L Sbjct 73 KAVDHL 78 > ath:AT1G02840 SR1; SR1; RNA binding / nucleic acid binding / nucleotide binding; K12890 splicing factor, arginine/serine-rich 1/9 Length=303 Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 0/70 (0%) Query 75 SRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIYDAKAAVDQL 134 SR +YV NLP I E+ D+F KYG + QI P G AFV +DD DA+ A+ Sbjct 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65 Query 135 SGFNVAGRYL 144 G++ G L Sbjct 66 DGYDFDGHRL 75 > tgo:TGME49_121360 RNA recognition motif domain-containing protein Length=274 Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 3/78 (3%) Query 69 RLAPEVSRILYVRNLPFKINGEELYDVFGKYGSIR--QIRRGTSPATRGTAFVVYDDIYD 126 R P S + +V NLP++ N +L F +G+I +I+RGT +RG FV +D+ Sbjct 161 RFGPPGSNV-FVANLPYEWNDIDLIQHFQHFGNILSARIQRGTEGNSRGFGFVSFDNSQA 219 Query 127 AKAAVDQLSGFNVAGRYL 144 A A+ ++GF+ GRYL Sbjct 220 AVNAIRGMNGFSCGGRYL 237 Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust. Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 2/65 (3%) Query 73 EVSRILYVRNLPFKINGEELYDVFGKYGSIRQI--RRGTSPATRGTAFVVYDDIYDAKAA 130 +V++ ++V ++P + EE ++GS+ + + + RG AFV Y+ +YDA+ A Sbjct 3 KVTKKIFVGSIPHTVTEEEFRKKVEEHGSVTALFYMKDQTEGDRGWAFVTYETVYDAQNA 62 Query 131 VDQLS 135 ++ L+ Sbjct 63 IEALN 67 > ath:AT4G02430 pre-mRNA splicing factor, putative / SR1 protein, putative Length=278 Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 0/70 (0%) Query 75 SRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIYDAKAAVDQL 134 SR +YV NLP I E+ D+F KYG + QI P G AFV ++D DA A+ Sbjct 6 SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGR 65 Query 135 SGFNVAGRYL 144 G++ G +L Sbjct 66 DGYDFDGHHL 75 > ath:AT5G07290 AML4; AML4 (ARABIDOPSIS MEI2-LIKE 4); RNA binding / nucleic acid binding / nucleotide binding Length=907 Score = 49.3 bits (116), Expect = 5e-06, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIYDAKAAVDQLSGF 137 L+V NL I+ EEL+ +F YG IR++RR ++ ++ + D+ AK A+ L+G Sbjct 297 LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQ--VYIEFFDVRKAKVALQGLNGL 354 Query 138 NVAGRYL 144 VAGR L Sbjct 355 EVAGRQL 361 Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Query 74 VSRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIYDAKAAVDQ 133 +SRIL+VRN+ I EL +F ++G +R + T+ RG V Y DI A+ A Sbjct 209 LSRILFVRNVDSSIEDCELGVLFKQFGDVRALH--TAGKNRGFIMVSYYDIRAAQKAARA 266 Query 134 LSGFNVAGRYL 144 L G + GR L Sbjct 267 LHGRLLRGRKL 277 > sce:YNL004W HRB1, TOM34; Hrb1p Length=454 Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 2/71 (2%) Query 73 EVSRILYVRNLPFKINGEELYDVFGKYGSIR--QIRRGTSPATRGTAFVVYDDIYDAKAA 130 E +R++Y NLPF +LYD+F G + ++R + A G A V YD++ DA Sbjct 373 ERNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADVC 432 Query 131 VDQLSGFNVAG 141 +++L+ +N G Sbjct 433 IERLNNYNYGG 443 Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust. Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 6/87 (6%) Query 60 LLAGRGRPQRLAPEVSRILYVRNLPFKINGEELYDVFGKYGSIRQ--IRRGTSPATRGTA 117 L G R R EV V+NLP +N + L D+F + G++ + + G+ Sbjct 249 LDRGELRHNRKTHEV----IVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSG 304 Query 118 FVVYDDIYDAKAAVDQLSGFNVAGRYL 144 V + DI D A+++ +G+++ G L Sbjct 305 TVSFYDIKDLHRAIEKYNGYSIEGNVL 331 > xla:444235 rbm23, MGC80803; RNA binding motif protein 23 Length=416 Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPAT---RGTAFVVYDDIYDAKAAVDQL 134 LYV +L F I E L +F +G I I+ P T +G F+ + D A+ A++QL Sbjct 252 LYVGSLHFNITEEMLRGIFEPFGKIENIQLLKEPDTGRSKGFGFITFTDAECARRALEQL 311 Query 135 SGFNVAGR 142 +GF +AG+ Sbjct 312 NGFELAGK 319 > ath:AT2G35410 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative Length=308 Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 2/73 (2%) Query 74 VSRILYVRNLPFKINGEELYDVFGKYGSIR--QIRRGTSPATRGTAFVVYDDIYDAKAAV 131 + R L+V NLP+ ++ ++ ++FG+ G++ +I R RG AFV +A+AA+ Sbjct 93 LKRKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAI 152 Query 132 DQLSGFNVAGRYL 144 D+ F V+GR + Sbjct 153 DKFDTFQVSGRII 165 > pfa:PF10_0217 pre-mRNA splicing factor, putative Length=538 Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query 75 SRILYVRNLPFKINGEELYDVFGKYGSIRQIR-RGTSPATRGTAFVVYDDIYDAKAAVDQ 133 S +YV NLP + EE+YD+FGKYG I+ I + + ++ AFV Y D+ DA A+++ Sbjct 11 SSCIYVGNLPGNVIEEEVYDLFGKYGRIKYIDIKPSRSSSSSYAFVHYYDLKDADYAIER 70 Query 134 LSGFNVAG 141 G+ G Sbjct 71 RDGYKFDG 78 > cpv:cgd7_5160 U1 small nuclear ribonucleoprotein A, rrm domain Length=122 Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 27/73 (36%), Positives = 46/73 (63%), Gaps = 6/73 (8%) Query 75 SRILYVRNLPFKINGEEL----YDVFGKYGSIRQIR-RGTSPATRGTAFVVYDDIYDAKA 129 ++ LY +NL KIN ++L +++F ++G I +I RG SP RG AF+++ D+ A Sbjct 16 NKTLYCKNLNDKINKKDLKILLFELFIQFGLIDKITIRGGSPY-RGQAFILFQDLNCAIN 74 Query 130 AVDQLSGFNVAGR 142 A + ++G NV G+ Sbjct 75 AKNSINGMNVLGK 87 > pfa:PF13_0122 RRM containing cyclophilin (EC:5.2.1.8); K01802 peptidylprolyl isomerase [EC:5.2.1.8] Length=125 Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 3/71 (4%) Query 75 SRILYVRNLPFKINGEELYDVFGKYGSIRQIR---RGTSPATRGTAFVVYDDIYDAKAAV 131 + IL+V + I+ + LYD+F +G IR I T+ RG AFV Y ++ DAK A+ Sbjct 7 TDILFVGGIDETIDEKSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHAL 66 Query 132 DQLSGFNVAGR 142 ++ F + G+ Sbjct 67 YNMNNFELNGK 77 > dre:393856 pabpc1b, MGC77608, pabpc1, zgc:77608; poly A binding protein, cytoplasmic 1 b; K13126 polyadenylate-binding protein Length=634 Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 4/74 (5%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSP--ATRGTAFVVYDDIYDAKAAVDQLS 135 +Y++N ++ ++L D+F KYG+ IR T +RG FV ++ DA+ AVD+++ Sbjct 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMN 252 Query 136 GFNVAGR--YLGGA 147 G + G+ Y+G A Sbjct 253 GKEMNGKLIYVGRA 266 Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust. Identities = 24/105 (22%), Positives = 50/105 (47%), Gaps = 10/105 (9%) Query 64 RGRPQRLA-----PEVSR----ILYVRNLPFKINGEELYDVFGKYGSIRQIR-RGTSPAT 113 +GRP R+ P + + ++++NL I+ + LYD F +G+I + + Sbjct 78 KGRPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS 137 Query 114 RGTAFVVYDDIYDAKAAVDQLSGFNVAGRYLGGAVLQPHKGAAAE 158 +G FV ++ A+ A+++++G + R + + K AE Sbjct 138 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAE 182 Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust. Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 1/74 (1%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPA-TRGTAFVVYDDIYDAKAAVDQLSG 136 LYV+NL I+ E L F +G+I + ++G FV + +A AV +++G Sbjct 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGRSKGFGFVCFSSPEEATKAVTEMNG 355 Query 137 FNVAGRYLGGAVLQ 150 VA + L A+ Q Sbjct 356 RIVATKPLYVALAQ 369 Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATR---GTAFVVYDDIYDAKAAVDQL 134 LYV +L + LY+ F G+I IR TR G A+V + DA+ A+D + Sbjct 13 LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72 Query 135 SGFNVAGR 142 + + GR Sbjct 73 NFDVIKGR 80 > hsa:80336 PABPC1L, C20orf119, FLJ11840, FLJ30809, FLJ42053, PABPC1L1, dJ1069P2.3, ePAB; poly(A) binding protein, cytoplasmic 1-like; K13126 polyadenylate-binding protein Length=614 Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 2/69 (2%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIR--RGTSPATRGTAFVVYDDIYDAKAAVDQLS 135 +YV+NLP ++ + L D+F ++G + ++ R S +R FV ++ +A+ AV ++ Sbjct 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252 Query 136 GFNVAGRYL 144 G V+GR L Sbjct 253 GKEVSGRLL 261 Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSP-ATRGTAFVVYDDIYDAKAAVDQLSG 136 ++++NL I+ + LYD F +G+I + +RG FV ++ A+ A++ ++G Sbjct 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160 Query 137 FNVAGR 142 + R Sbjct 161 MLLNDR 166 Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust. Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPA-TRGTAFVVYDDIYDAKAAVDQLSG 136 LYV+NL I+ ++L F YG I + T ++G FV + +A AV +++G Sbjct 296 LYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNG 355 > tpv:TP04_0400 hypothetical protein; K14787 multiple RNA-binding domain-containing protein 1 Length=727 Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats. Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 5/80 (6%) Query 73 EVSRILYVRNLPFKINGEELYDVFGKYGSIRQIR--RGTSPATRGTAFVVYDDIYDAKAA 130 E + ++ V+NLPF+ +EL ++F Y +++ +R + RG FVV+ DAK A Sbjct 645 EENDVIIVKNLPFQATKKELLELFKYYSNVKTVRIPKSAGNTHRGFGFVVFMSKNDAKLA 704 Query 131 VDQLSGFNVAGRYLGGAVLQ 150 ++ L ++ GR L VLQ Sbjct 705 MENLKNVHLYGRRL---VLQ 721 > cel:C33H5.12 rsp-6; SR Protein (splicing factor) family member (rsp-6); K12896 splicing factor, arginine/serine-rich 7 Length=179 Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 2/64 (3%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIYDAKAAVDQLSGF 137 +YV LP +EL ++F ++G IR++ P G AFV YDD+ DA+ AV L G Sbjct 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPP--GFAFVEYDDVRDAEDAVRALDGS 62 Query 138 NVAG 141 + G Sbjct 63 RICG 66 > bbo:BBOV_II005790 18.m06481; u1 snRNP; K11093 U1 small nuclear ribonucleoprotein 70kDa Length=247 Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query 76 RILYVRNLPFKINGEELYDVFGKYGSIRQIR----RGTSPATRGTAFVVYDDIYDAKAAV 131 + L+V N+P+++ ++L+ F YG +R+IR R P RG AF+ Y+D D A Sbjct 107 KTLFVSNIPYEVTEKQLWKEFDVYGRVRRIRMINDRKNIP--RGYAFIEYNDERDMVNAY 164 Query 132 DQLSGFNVAGR 142 + G V+GR Sbjct 165 KRADGRKVSGR 175 > xla:446310 zcrb1, MGC82154; zinc finger CCHC-type and RNA binding motif 1; K13154 U11/U12 small nuclear ribonucleoprotein 31 kDa protein Length=218 Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 4/82 (4%) Query 70 LAPEVSRILYVRNLPFKINGEELYDVFGKYGSIRQI---RRGTSPATRGTAFVVYDDIYD 126 LAP S + YV NLPF + +L+ +F KYG + ++ + S ++G +FV++ D Sbjct 5 LAPSKSTV-YVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDKES 63 Query 127 AKAAVDQLSGFNVAGRYLGGAV 148 A+ V L+ + GR + ++ Sbjct 64 AQNCVRGLNNKQLFGRAIKASI 85 > xla:444779 MGC81970 protein Length=512 Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPAT---RGTAFVVYDDIYDAKAAVDQL 134 LYV +L F I + L +F +G I I+ T +G F+ + D AK A++QL Sbjct 225 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 284 Query 135 SGFNVAGR 142 +GF +AGR Sbjct 285 NGFELAGR 292 > dre:767714 ncl, MGC152810, wu:fa12d03, zgc:152810; nucleolin; K11294 nucleolin Length=705 Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 2/76 (2%) Query 69 RLAPEVSRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIYDAK 128 R AP S++L V NL F + + L VF K SIR + P +G AFV ++++ D+K Sbjct 458 RGAPSASKVLVVNNLAFSASEDSLQSVFEKAVSIRIPQNNGRP--KGYAFVEFENVEDSK 515 Query 129 AAVDQLSGFNVAGRYL 144 A++ + ++ GR + Sbjct 516 EALENCNNTDIEGRSI 531 Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 4/92 (4%) Query 56 QPAPLLAGRGRP---QRLAPEVSRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPA 112 QP L R + + +R L+V+NLP+ I ++L ++F + IR + G + Sbjct 354 QPVKLDKARSKENSQENKKERDARTLFVKNLPYSITQDDLREIFDQAVDIR-VPMGNTGT 412 Query 113 TRGTAFVVYDDIYDAKAAVDQLSGFNVAGRYL 144 +RG A++ + A+ A+++ G +V GR + Sbjct 413 SRGIAYIEFKTEAIAEKALEEAQGSDVQGRSI 444 > xla:446785 rbm39, MGC80448, rnpc2; RNA binding motif protein 39; K13091 RNA-binding protein 39 Length=540 Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPAT---RGTAFVVYDDIYDAKAAVDQL 134 LYV +L F I + L +F +G I I+ T +G F+ + D AK A++QL Sbjct 251 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 310 Query 135 SGFNVAGR 142 +GF +AGR Sbjct 311 NGFELAGR 318 > mmu:268859 Rbfox1, A2bp, A2bp1, Hrnbp1, fox-1; RNA binding protein, fox-1 homolog (C. elegans) 1; K14946 RNA binding protein fox-1 Length=396 Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 36/127 (28%), Positives = 59/127 (46%), Gaps = 21/127 (16%) Query 21 AEAAASLSASFAAIAQTPTESAAAAAAAAAKSPAMQPAPLLAGRGRPQRLAPEVSRILYV 80 +E +A SA + T T+ AA P QP+ + +P+RL +V Sbjct 73 SEQSADTSAQTVSGTATQTDDAAPTDG----QPQTQPSENTESKSQPKRL--------HV 120 Query 81 RNLPFKINGEELYDVFGKYGSIRQI-----RRGTSPATRGTAFVVYDDIYDAKAAVDQLS 135 N+PF+ +L +FG++G I + RG ++G FV +++ DA A ++L Sbjct 121 SNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG----SKGFGFVTFENSADADRAREKLH 176 Query 136 GFNVAGR 142 G V GR Sbjct 177 GTVVEGR 183 > hsa:9584 RBM39, CAPER, CAPERalpha, CC1.3, DKFZp781C0423, FLJ44170, HCC1, RNPC2, fSAP59; RNA binding motif protein 39; K13091 RNA-binding protein 39 Length=524 Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPAT---RGTAFVVYDDIYDAKAAVDQL 134 LYV +L F I + L +F +G I I+ T +G F+ + D AK A++QL Sbjct 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query 135 SGFNVAGR 142 +GF +AGR Sbjct 312 NGFELAGR 319 > xla:397919 ncl; nucleolin; K11294 nucleolin Length=705 Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 1/70 (1%) Query 75 SRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIYDAKAAVDQL 134 SR L+V+N+P+ + EEL ++F IR I G + +G A+V + +A A+++ Sbjct 375 SRTLFVKNIPYSTSAEELQEIFENAKDIR-IPTGNDGSNKGIAYVEFSTEAEANKALEEK 433 Query 135 SGFNVAGRYL 144 G + GR L Sbjct 434 QGAEIEGRSL 443 Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Query 75 SRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIYDAKAAVDQL 134 S++L V NL + + L +VF K SIR I + A +G AFV + + DAK A+D Sbjct 465 SKVLVVNNLSYSATEDSLREVFEKATSIR-IPQNQGRA-KGFAFVEFSSMEDAKEAMDSC 522 Query 135 SGFNVAGRYL 144 + V GR + Sbjct 523 NNTEVEGRSI 532 > pfa:PFL0830w RNA binding protein, putative; K14787 multiple RNA-binding domain-containing protein 1 Length=1119 Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 45/74 (60%), Gaps = 2/74 (2%) Query 73 EVSRILYVRNLPFKINGEELYDVFGKYGSIRQIR--RGTSPATRGTAFVVYDDIYDAKAA 130 +V++ L V+NL F++N EEL +F +G+++ +R + +RG AF+ + ++ A Sbjct 980 QVTKKLVVKNLAFQVNKEELRKLFSAFGNVKSVRIPKNVYNRSRGYAFIEFMSKKESCNA 1039 Query 131 VDQLSGFNVAGRYL 144 ++ L ++ GR+L Sbjct 1040 IESLQHTHLYGRHL 1053 > xla:444284 pabpc4, MGC80927, PABP, ePAB, ePABP; poly(A) binding protein, cytoplasmic 4 (inducible form); K13126 polyadenylate-binding protein Length=626 Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPA--TRGTAFVVYDDIYDAKAAVDQLS 135 +Y++N ++ E L + F KYG ++ T P+ ++G FV ++ DA AVD ++ Sbjct 193 VYIKNFGEDMDDERLKETFSKYGKTLSVKVMTDPSGKSKGFGFVSFERHEDANKAVDDMN 252 Query 136 GFNVAGRYL 144 G +V G+ + Sbjct 253 GKDVNGKIM 261 Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSP-ATRGTAFVVYDDIYDAKAAVDQLSG 136 ++++NL I+ + LYD F +G+I + ++G AFV ++ A A+++++G Sbjct 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNG 160 Query 137 FNVAGR 142 + R Sbjct 161 MLLNDR 166 Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 7/77 (9%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIR----QIRRGTSPATRGTAFVVYDDIYDAKAAVDQ 133 LY++NL I+ E+L F +GSI + G S +G FV + +A AV + Sbjct 296 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS---KGFGFVCFSSPEEATKAVTE 352 Query 134 LSGFNVAGRYLGGAVLQ 150 ++G V + L A+ Q Sbjct 353 MNGRIVGSKPLYVALAQ 369 > mmu:170791 Rbm39, 1500012C14Rik, 2310040E03Rik, B330012G18Rik, C79248, R75070, Rnpc2, caper; RNA binding motif protein 39; K13091 RNA-binding protein 39 Length=530 Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 3/68 (4%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPAT---RGTAFVVYDDIYDAKAAVDQL 134 LYV +L F I + L +F +G I I+ T +G F+ + D AK A++QL Sbjct 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311 Query 135 SGFNVAGR 142 +GF +AGR Sbjct 312 NGFELAGR 319 > hsa:54715 RBFOX1, A2BP1, FOX-1, FOX1, HRNBP1; RNA binding protein, fox-1 homolog (C. elegans) 1; K14946 RNA binding protein fox-1 Length=370 Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 19/143 (13%) Query 5 TTAARATAAAAAAAGTAEAAASLSASFAAIAQTPTESAAAAAAAAAKSPAMQPAPLLAGR 64 TT T A T + S ++ T T++ AA P QP+ + Sbjct 56 TTVPEHTLNLYPPAQTHSEQSPADTSAQTVSGTATQTDDAAPTDG--QPQTQPSENTENK 113 Query 65 GRPQRLAPEVSRILYVRNLPFKINGEELYDVFGKYGSIRQI-----RRGTSPATRGTAFV 119 +P+RL +V N+PF+ +L +FG++G I + RG ++G FV Sbjct 114 SQPKRL--------HVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG----SKGFGFV 161 Query 120 VYDDIYDAKAAVDQLSGFNVAGR 142 +++ DA A ++L G V GR Sbjct 162 TFENSADADRAREKLHGTVVEGR 184 > hsa:132430 PABPC4L, DKFZp686J06116; poly(A) binding protein, cytoplasmic 4-like; K13126 polyadenylate-binding protein Length=428 Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 9/121 (7%) Query 33 AIAQTPTESAAAAAAAAAKSPAMQPAPLLAGR--GRPQRLAPEVSR-----ILYVRNLPF 85 A +SAA A ++ + GR R R A S+ +Y++N Sbjct 198 AFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGG 257 Query 86 KINGEELYDVFGKYGSIRQIRRGT--SPATRGTAFVVYDDIYDAKAAVDQLSGFNVAGRY 143 ++ E L DVF KYG ++ T S ++G FV +D AK AV++++G ++ G+ Sbjct 258 DMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQL 317 Query 144 L 144 + Sbjct 318 I 318 Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust. Identities = 20/76 (26%), Positives = 40/76 (52%), Gaps = 1/76 (1%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPA-TRGTAFVVYDDIYDAKAAVDQLSG 136 LY++NL I+ E+L + F +GSI +++ ++G + + DA A+ +++G Sbjct 353 LYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNG 412 Query 137 FNVAGRYLGGAVLQPH 152 + + L A+ Q H Sbjct 413 RILGSKPLSIALAQRH 428 Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust. Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 1/60 (1%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIR-RGTSPATRGTAFVVYDDIYDAKAAVDQLSG 136 ++++NL I+ + LY+ F +G I + ++G AFV + + A A+++++G Sbjct 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNG 217 > hsa:85437 ZCRB1, MADP-1, MADP1, MGC26805, RBM36, ZCCHC19; zinc finger CCHC-type and RNA binding motif 1; K13154 U11/U12 small nuclear ribonucleoprotein 31 kDa protein Length=217 Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Query 70 LAPEVSRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATR---GTAFVVYDDIYD 126 LAP S + YV NLPF + +LY +F KYG + ++ TR G AF+++ D Sbjct 5 LAPSKSTV-YVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDS 63 Query 127 AKAAVDQLSGFNVAGRYLGGAV 148 A+ ++ + GR + ++ Sbjct 64 AQNCTRAINNKQLFGRVIKASI 85 > hsa:55147 RBM23, CAPERbeta, FLJ10482, MGC4458, RNPC4; RNA binding motif protein 23 Length=439 Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 18/107 (16%) Query 60 LLAGRGRPQRLAPEVSRILYVRNLPFKINGEEL---YDVFGKYGSIRQIRRGTSPATRGT 116 L G G P RL YV +L F I + L ++ FGK +I ++ + ++G Sbjct 255 LQKGNGGPMRL--------YVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGY 306 Query 117 AFVVYDDIYDAKAAVDQLSGFNVAGRYLGGAVLQPHKGAAAERCAGG 163 F+ + D A+ A++QL+GF +AGR + G ER GG Sbjct 307 GFITFSDSECARRALEQLNGFELAGRPM-------RVGHVTERLDGG 346 > dre:406251 rbm39a, rnpc2, zgc:55780; RNA binding motif protein 39a; K13091 RNA-binding protein 39 Length=523 Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 24/68 (35%), Positives = 40/68 (58%), Gaps = 3/68 (4%) Query 78 LYVRNLPFKINGEEL---YDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIYDAKAAVDQL 134 LYV +L F I + L ++ FG+ SI+ + + ++G F+ + D AK A++QL Sbjct 248 LYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQL 307 Query 135 SGFNVAGR 142 +GF +AGR Sbjct 308 NGFELAGR 315 > bbo:BBOV_III004120 17.m07378; U2 small nuclear ribonucleoprotein B' Length=285 Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 4/72 (5%) Query 75 SRILYVRNLPFKINGE----ELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIYDAKAA 130 ++ +Y++N+ +I + EL +FG++G I I TS +G AF+++D++ A A Sbjct 30 NQTIYIKNINERIKVDVLKAELLKMFGRFGKILDIVALTSFWRKGQAFIIFDNVESATNA 89 Query 131 VDQLSGFNVAGR 142 + ++ GF + G Sbjct 90 LHEMQGFVMDGH 101 > mmu:18459 Pabpc2, PABP, PABP+, Pabp2; poly(A) binding protein, cytoplasmic 2; K13126 polyadenylate-binding protein Length=628 Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 19/69 (27%), Positives = 42/69 (60%), Gaps = 2/69 (2%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSP--ATRGTAFVVYDDIYDAKAAVDQLS 135 +Y++N +++ E L +FG++G I ++ T ++G FV ++ DA+ AVD+++ Sbjct 193 VYIKNFGDRMDDETLNGLFGRFGQILSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMN 252 Query 136 GFNVAGRYL 144 G + G+++ Sbjct 253 GKELNGKHI 261 Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 1/74 (1%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPA-TRGTAFVVYDDIYDAKAAVDQLSG 136 LYV+NL I+ E L F +G+I + T ++G FV + +A AV +++G Sbjct 296 LYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRSKGFGFVCFSSPEEATKAVSEMNG 355 Query 137 FNVAGRYLGGAVLQ 150 VA + L A+ Q Sbjct 356 RIVATKPLYVALAQ 369 Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust. Identities = 25/109 (22%), Positives = 52/109 (47%), Gaps = 10/109 (9%) Query 64 RGRPQRLA-----PEVSR----ILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSP-AT 113 +G+P R+ P + R ++++NL I+ + LYD F +G+I + + + Sbjct 78 KGKPVRIMWSQRDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVSDENGS 137 Query 114 RGTAFVVYDDIYDAKAAVDQLSGFNVAGRYLGGAVLQPHKGAAAERCAG 162 +G FV ++ A+ A+++++G + R + + K AE G Sbjct 138 KGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTG 186 > sce:YPR112C MRD1; Essential conserved protein that is part of the 90S preribosome; required for production of 18S rRNA and small ribosomal subunit; contains five consensus RNA-binding domains; K14787 multiple RNA-binding domain-containing protein 1 Length=887 Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 43/69 (62%), Gaps = 2/69 (2%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIR--RGTSPATRGTAFVVYDDIYDAKAAVDQLS 135 + V+NLPF+ ++++++F +G ++ +R + + RG AFV + +A+ A+DQL Sbjct 765 IIVKNLPFEATRKDVFELFNSFGQLKSVRVPKKFDKSARGFAFVEFLLPKEAENAMDQLH 824 Query 136 GFNVAGRYL 144 G ++ GR L Sbjct 825 GVHLLGRRL 833 Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 3/60 (5%) Query 76 RILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIYDAKAAVDQLS 135 +++ V+N PF EEL ++F YG ++ R P A V + D A+AA +LS Sbjct 532 KVILVKNFPFGTTREELGEMFLPYG---KLERLLMPPAGTIAIVQFRDTTSARAAFTKLS 588 > sce:YGR159C NSR1, SHE5; Nsr1p; K11294 nucleolin Length=414 Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 3/73 (4%) Query 73 EVSRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPAT---RGTAFVVYDDIYDAKA 129 E S L++ NL F + + ++++F K+G + +R T P T +G +V + ++ DAK Sbjct 264 EPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKK 323 Query 130 AVDQLSGFNVAGR 142 A+D L G + R Sbjct 324 ALDALQGEYIDNR 336 > ath:AT3G49430 SRp34a; SRp34a (Ser/Arg-rich protein 34a); RNA binding / nucleic acid binding / nucleotide binding Length=297 Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 0/72 (0%) Query 70 LAPEVSRILYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPATRGTAFVVYDDIYDAKA 129 ++ SR +YV NLP I E+ D+F KYG I I P FV ++ DA+ Sbjct 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60 Query 130 AVDQLSGFNVAG 141 A+ G+N+ G Sbjct 61 AIKGRDGYNLDG 72 > dre:321035 pabpc4, cb12, sb:cb12; poly(A) binding protein, cytoplasmic 4 (inducible form); K13126 polyadenylate-binding protein Length=637 Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 2/67 (2%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSPA--TRGTAFVVYDDIYDAKAAVDQLS 135 +Y++N ++ + L ++F KYG ++ T P +RG FV Y+ DA AV++++ Sbjct 194 VYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEEMN 253 Query 136 GFNVAGR 142 G + G+ Sbjct 254 GTELNGK 260 Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust. Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIR-RGTSPATRGTAFVVYDDIYDAKAAVDQLSG 136 ++++NL I+ + LYD F +G+I + ++G AFV ++ A A+++++G Sbjct 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNG 161 Query 137 FNVAGR 142 + R Sbjct 162 MLLNDR 167 Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust. Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 7/77 (9%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIR----QIRRGTSPATRGTAFVVYDDIYDAKAAVDQ 133 LY++NL I+ E+L F +GSI + G S +G FV + +A AV + Sbjct 297 LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS---KGFGFVCFSSPEEATKAVTE 353 Query 134 LSGFNVAGRYLGGAVLQ 150 ++G V + L A+ Q Sbjct 354 MNGRIVGSKPLYVALAQ 370 > hsa:26986 PABPC1, PAB1, PABP, PABP1, PABPC2, PABPL1; poly(A) binding protein, cytoplasmic 1; K13126 polyadenylate-binding protein Length=636 Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 4/74 (5%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGT--SPATRGTAFVVYDDIYDAKAAVDQLS 135 +Y++N ++ E L D+FGK+G ++ T S ++G FV ++ DA+ AVD+++ Sbjct 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252 Query 136 GFNVAGR--YLGGA 147 G + G+ Y+G A Sbjct 253 GKELNGKQIYVGRA 266 Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust. Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 1/66 (1%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIRQIRRGTSP-ATRGTAFVVYDDIYDAKAAVDQLSG 136 ++++NL I+ + LYD F +G+I + ++G FV ++ A+ A+++++G Sbjct 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160 Query 137 FNVAGR 142 + R Sbjct 161 MLLNDR 166 Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust. Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 5/76 (6%) Query 78 LYVRNLPFKINGEELYDVFGKYGSI---RQIRRGTSPATRGTAFVVYDDIYDAKAAVDQL 134 LYV+NL I+ E L F +G+I + + G ++G FV + +A AV ++ Sbjct 296 LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR--SKGFGFVCFSSPEEATKAVTEM 353 Query 135 SGFNVAGRYLGGAVLQ 150 +G VA + L A+ Q Sbjct 354 NGRIVATKPLYVALAQ 369 > tpv:TP01_1201 hypothetical protein Length=268 Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 2/69 (2%) Query 78 LYVRNLPFKINGEELYDVFGKYGSIR--QIRRGTSPATRGTAFVVYDDIYDAKAAVDQLS 135 L+V ++P N +L + F +G++ +++R ++ RG F+ YD+ A A+ ++ Sbjct 156 LFVFHVPANWNDLDLVEHFKHFGNVISARVQRDSAGRNRGFGFISYDNPQSAVVAIKNMN 215 Query 136 GFNVAGRYL 144 GF+V G+YL Sbjct 216 GFSVGGKYL 224 Lambda K H 0.315 0.126 0.351 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 3832864436 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40