bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_8524_orf1 Length=64 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_078950 U6 snRNA associated Sm-like protein LSm4, pu... 77.0 1e-14 pfa:PF11_0524 lsm4 homologue, putative; K12623 U6 snRNA-associ... 72.8 2e-13 ath:AT5G27720 emb1644 (embryo defective 1644); K12623 U6 snRNA... 71.6 6e-13 dre:393669 lsm4, MGC73057, zgc:73057, zgc:77848; LSM4 homolog,... 67.0 2e-11 xla:495318 lsm4; LSM4 homolog, U6 small nuclear RNA associated... 66.6 2e-11 hsa:25804 LSM4, YER112W; LSM4 homolog, U6 small nuclear RNA as... 66.6 2e-11 mmu:50783 Lsm4; LSM4 homolog, U6 small nuclear RNA associated ... 65.9 3e-11 cel:F32A5.7 lsm-4; LSM Sm-like protein family member (lsm-4); ... 63.2 2e-10 tpv:TP03_0516 U6 snRNA-associated protein; K12623 U6 snRNA-ass... 63.2 2e-10 bbo:BBOV_I004760 19.m02880; U6 snRNA-associated Sm-like protei... 60.5 1e-09 cpv:cgd4_2710 hypothetical protein 58.5 5e-09 bbo:BBOV_II002900 18.m06239; u6 snRNA-associated sm-like prote... 32.3 0.35 bbo:BBOV_II002860 18.m06235; u6 snRNA-associated sm-like prote... 32.3 0.35 bbo:BBOV_II002620 18.m06211; u6 snRNA-associated sm-like prote... 32.3 0.35 sce:YBL026W LSM2, SMX5, SNP3; Lsm (Like Sm) protein; part of h... 32.0 0.56 sce:YER112W LSM4, SDB23, USS1; Lsm (Like Sm) protein; part of ... 31.6 0.72 cel:T10G3.6 gut-2; GUT differentiation defective family member... 31.2 0.90 cpv:cgd5_2220 small nuclear ribonucleoprotein D1. SM domain co... 30.8 1.2 ath:AT1G03330 small nuclear ribonucleoprotein D, putative / sn... 30.4 1.3 tgo:TGME49_067350 small nuclear ribonucleoprotein, putative ; ... 30.4 1.3 tgo:TGME49_097140 u6 snRNA-associated sm-like protein Lsm2, pu... 30.4 1.6 pfa:PF11_0266 small nuclear ribonucleoprotein D1, putative; K1... 30.0 2.1 dre:57924 smx5, lsm2, wu:fe48h10, zgc:101795; smx5; K12621 U6 ... 28.9 4.2 > tgo:TGME49_078950 U6 snRNA associated Sm-like protein LSm4, putative ; K12623 U6 snRNA-associated Sm-like protein LSm4 Length=214 Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 31/42 (73%), Positives = 40/42 (95%), Gaps = 0/42 (0%) Query 3 FMNLHLKNSVCTSKDGERFFKVAECFIRGNTIKYARLQEELV 44 FMNLHLK+SVCTSKDGERF+K++EC+IRGN +KY RLQ+E++ Sbjct 36 FMNLHLKDSVCTSKDGERFWKLSECYIRGNMVKYIRLQDEVL 77 > pfa:PF11_0524 lsm4 homologue, putative; K12623 U6 snRNA-associated Sm-like protein LSm4 Length=126 Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 26/43 (60%), Positives = 40/43 (93%), Gaps = 0/43 (0%) Query 2 RFMNLHLKNSVCTSKDGERFFKVAECFIRGNTIKYARLQEELV 44 RFMNLH+KN +CTSKDG++F+K++EC++RGN+IKY R+Q++ + Sbjct 35 RFMNLHMKNIICTSKDGDKFWKISECYVRGNSIKYIRVQDQAI 77 > ath:AT5G27720 emb1644 (embryo defective 1644); K12623 U6 snRNA-associated Sm-like protein LSm4 Length=129 Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 27/56 (48%), Positives = 43/56 (76%), Gaps = 0/56 (0%) Query 3 FMNLHLKNSVCTSKDGERFFKVAECFIRGNTIKYARLQEELVALVKDENPKAGTSP 58 +MN+HL+ +CTSKDG+RF+++ EC+IRGNTIKY R+ +E++ V++E + P Sbjct 35 WMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEEKTRTDRKP 90 > dre:393669 lsm4, MGC73057, zgc:73057, zgc:77848; LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae); K12623 U6 snRNA-associated Sm-like protein LSm4 Length=143 Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 42/48 (87%), Gaps = 0/48 (0%) Query 3 FMNLHLKNSVCTSKDGERFFKVAECFIRGNTIKYARLQEELVALVKDE 50 +MN++L+ +CTS+DG++F+++ EC+IRG+TIKY R+ +E++ +VK+E Sbjct 35 WMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEE 82 > xla:495318 lsm4; LSM4 homolog, U6 small nuclear RNA associated; K12623 U6 snRNA-associated Sm-like protein LSm4 Length=138 Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 42/48 (87%), Gaps = 0/48 (0%) Query 3 FMNLHLKNSVCTSKDGERFFKVAECFIRGNTIKYARLQEELVALVKDE 50 +MN++L+ +CTS+DG++F+++ EC+IRG+TIKY R+ +E++ +VK+E Sbjct 35 WMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEE 82 > hsa:25804 LSM4, YER112W; LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae); K12623 U6 snRNA-associated Sm-like protein LSm4 Length=139 Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 23/48 (47%), Positives = 42/48 (87%), Gaps = 0/48 (0%) Query 3 FMNLHLKNSVCTSKDGERFFKVAECFIRGNTIKYARLQEELVALVKDE 50 +MN++L+ +CTS+DG++F+++ EC+IRG+TIKY R+ +E++ +VK+E Sbjct 35 WMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVKEE 82 > mmu:50783 Lsm4; LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae); K12623 U6 snRNA-associated Sm-like protein LSm4 Length=138 Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 23/52 (44%), Positives = 43/52 (82%), Gaps = 0/52 (0%) Query 3 FMNLHLKNSVCTSKDGERFFKVAECFIRGNTIKYARLQEELVALVKDENPKA 54 +MN++L+ +CTS+DG++F+++ EC+IRG+TIKY R+ +E++ +V++E K Sbjct 35 WMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLRIPDEIIDMVREEAAKG 86 > cel:F32A5.7 lsm-4; LSM Sm-like protein family member (lsm-4); K12623 U6 snRNA-associated Sm-like protein LSm4 Length=123 Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 26/48 (54%), Positives = 39/48 (81%), Gaps = 0/48 (0%) Query 3 FMNLHLKNSVCTSKDGERFFKVAECFIRGNTIKYARLQEELVALVKDE 50 +MN+HL + + TSKDG++FFK++E ++RG+TIKY R+ E +V LVK E Sbjct 36 WMNIHLVDVIFTSKDGDKFFKMSEAYVRGSTIKYLRIPETVVDLVKTE 83 > tpv:TP03_0516 U6 snRNA-associated protein; K12623 U6 snRNA-associated Sm-like protein LSm4 Length=141 Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 27/48 (56%), Positives = 35/48 (72%), Gaps = 0/48 (0%) Query 3 FMNLHLKNSVCTSKDGERFFKVAECFIRGNTIKYARLQEELVALVKDE 50 FMN+H+ N VCTSK G F+K+ ECFIRGNT+K RL E+ + K+E Sbjct 36 FMNMHMVNVVCTSKSGTDFWKLDECFIRGNTVKSLRLPNEVAEIAKEE 83 > bbo:BBOV_I004760 19.m02880; U6 snRNA-associated Sm-like protein LSm4; K12623 U6 snRNA-associated Sm-like protein LSm4 Length=104 Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 28/52 (53%), Positives = 38/52 (73%), Gaps = 1/52 (1%) Query 3 FMNLHLKNSVCTSKDGERFFKVAECFIRGNTIKYARLQEELVALVKDENPKA 54 FMN+H+ N++CTSK G+ F+K++ECFIRGN +K R +E VA V E KA Sbjct 24 FMNVHMINAICTSKKGDEFWKLSECFIRGNNVKSFRFPDE-VATVALEESKA 74 > cpv:cgd4_2710 hypothetical protein Length=77 Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 0/47 (0%) Query 4 MNLHLKNSVCTSKDGERFFKVAECFIRGNTIKYARLQEELVALVKDE 50 MNL L N +C S+DG FFK+ EC+IRGN IK R+ +E + KD+ Sbjct 1 MNLALNNVICNSRDGNGFFKMVECYIRGNNIKLIRISDENINTAKDD 47 > bbo:BBOV_II002900 18.m06239; u6 snRNA-associated sm-like protein; K12621 U6 snRNA-associated Sm-like protein LSm2 Length=99 Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 11/64 (17%) Query 2 RFMNLHLKNSVCTSKDGERF---FKVAECFIRGNTIKYARLQ------EELVALVKDENP 52 +++N L N T+ D ER+ V CF+RG+ ++Y L EEL L + E Sbjct 36 QYLNFKLSN--VTASDTERYPHLLSVVNCFVRGSVVRYVYLNSSDVNTEELQELCRREAM 93 Query 53 KAGT 56 K+ Sbjct 94 KSNV 97 > bbo:BBOV_II002860 18.m06235; u6 snRNA-associated sm-like protein Lsm2; K12621 U6 snRNA-associated Sm-like protein LSm2 Length=99 Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 11/64 (17%) Query 2 RFMNLHLKNSVCTSKDGERF---FKVAECFIRGNTIKYARLQ------EELVALVKDENP 52 +++N L N T+ D ER+ V CF+RG+ ++Y L EEL L + E Sbjct 36 QYLNFKLSN--VTASDTERYPHLLSVVNCFVRGSVVRYVYLNSSDVNTEELQELCRREAM 93 Query 53 KAGT 56 K+ Sbjct 94 KSNV 97 > bbo:BBOV_II002620 18.m06211; u6 snRNA-associated sm-like protein Lsm2; K12621 U6 snRNA-associated Sm-like protein LSm2 Length=99 Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust. Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 11/64 (17%) Query 2 RFMNLHLKNSVCTSKDGERF---FKVAECFIRGNTIKYARLQ------EELVALVKDENP 52 +++N L N T+ D ER+ V CF+RG+ ++Y L EEL L + E Sbjct 36 QYLNFKLSN--VTASDTERYPHLLSVVNCFVRGSVVRYVYLNSSDVNTEELQELCRREAM 93 Query 53 KAGT 56 K+ Sbjct 94 KSNV 97 > sce:YBL026W LSM2, SMX5, SNP3; Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA; K12621 U6 snRNA-associated Sm-like protein LSm2 Length=95 Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust. Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Query 2 RFMNLHLKNSVCTS-KDGERFFKVAECFIRGNTIKYARLQEELV 44 +F+NL L N CT K V FIRG+T++Y L + +V Sbjct 34 QFLNLKLDNISCTDEKKYPHLGSVRNIFIRGSTVRYVYLNKNMV 77 > sce:YER112W LSM4, SDB23, USS1; Lsm (Like Sm) protein; part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay; nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA; K12623 U6 snRNA-associated Sm-like protein LSm4 Length=187 Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust. Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 10/58 (17%) Query 3 FMNLHLKN-------SVCTSKD---GERFFKVAECFIRGNTIKYARLQEELVALVKDE 50 +MNL L N S S+D + K+ E +IRG IK+ +LQ+ ++ VK + Sbjct 35 WMNLTLSNVTEYSEESAINSEDNAESSKAVKLNEIYIRGTFIKFIKLQDNIIDKVKQQ 92 > cel:T10G3.6 gut-2; GUT differentiation defective family member (gut-2); K12621 U6 snRNA-associated Sm-like protein LSm2 Length=97 Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust. Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 5/46 (10%) Query 2 RFMNLHLKNSVCTSKDGERF---FKVAECFIRGNTIKYARLQEELV 44 +++N+ L + T D ERF V CFIRG+ ++Y +L + V Sbjct 34 QYLNMKLTD--ITVSDPERFPHMVSVKNCFIRGSVVRYVQLPSDQV 77 > cpv:cgd5_2220 small nuclear ribonucleoprotein D1. SM domain containing protein ; K11087 small nuclear ribonucleoprotein D1 Length=137 Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust. Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%) Query 4 MNLHLKNSVCTSKDGERFFKVAECFIRGNTIKYARLQEELV--ALVKDENPK 53 MN +LKN V S +++ +RGNTI+Y L + L AL+ D+ PK Sbjct 47 MNTYLKN-VKMSVKHRNPVSLSQITVRGNTIRYFILPDSLPLDALLIDDTPK 97 > ath:AT1G03330 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative; K12621 U6 snRNA-associated Sm-like protein LSm2 Length=93 Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust. Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%) Query 2 RFMNLHLKNSVCTSKDGE-RFFKVAECFIRGNTIKYARLQEE 42 +++N+ L+N+ +D V CFIRG+ ++Y +L ++ Sbjct 34 QYLNIKLENTRVVDQDKYPHMLSVRNCFIRGSVVRYVQLPKD 75 > tgo:TGME49_067350 small nuclear ribonucleoprotein, putative ; K11087 small nuclear ribonucleoprotein D1 Length=121 Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust. Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 3/51 (5%) Query 4 MNLHLKNSVCTSKDGERFFKVAECFIRGNTIKYARLQEELV--ALVKDENP 52 MN HLKN T K G + IRGN I+Y L + L L+ D+ P Sbjct 36 MNTHLKNVKMTMKQGNP-TSLEHLTIRGNNIRYFILPDSLPLDTLLIDDTP 85 > tgo:TGME49_097140 u6 snRNA-associated sm-like protein Lsm2, putative ; K12621 U6 snRNA-associated Sm-like protein LSm2 Length=101 Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust. Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Query 2 RFMNLHLKN-SVCTSKDGERFFKVAECFIRGNTIKYARL 39 +F+N+ L N SV + V CFIRG+ ++Y L Sbjct 36 QFLNIKLNNVSVADPERCPHLLSVKNCFIRGSAVRYVHL 74 > pfa:PF11_0266 small nuclear ribonucleoprotein D1, putative; K11087 small nuclear ribonucleoprotein D1 Length=126 Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust. Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 12/62 (19%) Query 4 MNLHLKNSVCTSKD---------GERFFKVAECFIRGNTIKYARLQEEL---VALVKDEN 51 MN H+KN K+ ++F + IRGN I+Y L + L LV+D Sbjct 36 MNTHMKNVKVVIKNKNIAEYNVNTKQFLSLEHVTIRGNNIRYFILSDSLPLDSLLVEDTT 95 Query 52 PK 53 PK Sbjct 96 PK 97 > dre:57924 smx5, lsm2, wu:fe48h10, zgc:101795; smx5; K12621 U6 snRNA-associated Sm-like protein LSm2 Length=95 Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust. Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 3/58 (5%) Query 2 RFMNLHLKN-SVCTSKDGERFFKVAECFIRGNTIKYARLQEELV--ALVKDENPKAGT 56 +++N+ L + SV + V CFIRG+ ++Y +L + V L++D K T Sbjct 34 QYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDAARKEAT 91 Lambda K H 0.320 0.134 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2051595972 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40