bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 164,496 sequences; 82,071,388 total letters Query= Eten_8689_orf1 Length=107 Score E Sequences producing significant alignments: (Bits) Value tgo:TGME49_023390 sec63 domain-containing DEAD/DEAH box helica... 136 1e-32 bbo:BBOV_III000950 17.m07111; sec63 domain containing protein ... 77.0 1e-14 pfa:PFD1060w U5 small nuclear ribonucleoprotein-specific prote... 73.2 2e-13 tpv:TP03_0747 ATP-dependent RNA helicase; K12854 pre-mRNA-spli... 72.0 4e-13 cpv:cgd5_2960 U5snrp Brr2 SFII RNA helicase (sec63 and the sec... 50.1 2e-06 ath:AT1G20960 emb1507 (embryo defective 1507); ATP binding / A... 49.7 2e-06 cel:Y46G5A.4 hypothetical protein; K12854 pre-mRNA-splicing he... 45.4 4e-05 hsa:23020 SNRNP200, ASCC3L1, BRR2, FLJ11521, HELIC2, RP33, U5-... 43.5 2e-04 mmu:320632 Snrnp200, A330064G03Rik, Ascc3l1, BC011390, HELIC2,... 43.5 2e-04 dre:799690 fb63a09; wu:fb63a09 (EC:3.6.4.13); K12854 pre-mRNA-... 42.0 5e-04 ath:AT2G42270 U5 small nuclear ribonucleoprotein helicase, put... 35.8 0.035 cel:Y57A10A.15 hypothetical protein; K02332 DNA polymerase gam... 32.0 0.44 cel:Y45F3A.2 rab-30; RAB family member (rab-30); K07917 Ras-re... 30.8 1.0 hsa:2814 GP5, CD42d; glycoprotein V (platelet); K06260 platele... 30.4 1.3 hsa:55726 C12orf11, FLJ10630, FLJ10637, NET48; chromosome 12 o... 29.6 2.3 > tgo:TGME49_023390 sec63 domain-containing DEAD/DEAH box helicase, putative ; K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13] Length=2198 Score = 136 bits (343), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 74/104 (71%), Positives = 80/104 (76%), Gaps = 8/104 (7%) Query 5 MAEAFERFKRFEYRQNSNLVLQRDPYLTGAPGGAHQGEPTGEPESLAGRKLYPMGDKAER 64 MAE FERFKRFEYRQNSNLVLQRD TG H GEPTGEPESLAGRKLYPMGDK ER Sbjct 1 MAEEFERFKRFEYRQNSNLVLQRDTS-TGVAPAVHLGEPTGEPESLAGRKLYPMGDKVER 59 Query 65 GLKKEEK-EKIGKRRNKLKEGGIAKRAKLDIKKGSTVLDADVTE 107 GLKKE++ K +R KL KR KLD+K+G+TVLDADVTE Sbjct 60 GLKKEDRPVKNDSKRAKL------KRNKLDLKRGATVLDADVTE 97 > bbo:BBOV_III000950 17.m07111; sec63 domain containing protein (EC:3.6.1.-); K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13] Length=2133 Score = 77.0 bits (188), Expect = 1e-14, Method: Composition-based stats. Identities = 47/108 (43%), Positives = 63/108 (58%), Gaps = 15/108 (13%) Query 5 MAEAFERFKRFEYRQNSNLVLQRDPYLTGAPGGAHQGEPT-GEPESLAGRKLYPMGDKAE 63 MAE +ERFKRFEYR NSNLVLQ D G +G T GEPESLA R Y MGD Sbjct 1 MAEQYERFKRFEYRTNSNLVLQHD-------GHVSKGAVTSGEPESLANRLKYKMGD--- 50 Query 64 RGLKKEEKEKIGKRRNKLKEGGIA----KRAKLDIKKGSTVLDADVTE 107 R + + + K+R++ + +R +LD+KKG +VL D+++ Sbjct 51 RVVHSKPADLPAKKRSQASDSSSLPLKHRRTRLDLKKGDSVLTVDISD 98 > pfa:PFD1060w U5 small nuclear ribonucleoprotein-specific protein, putative; K01509 adenosinetriphosphatase [EC:3.6.1.3] Length=2874 Score = 73.2 bits (178), Expect = 2e-13, Method: Composition-based stats. Identities = 40/86 (46%), Positives = 51/86 (59%), Gaps = 13/86 (15%) Query 5 MAEAFERFKRFEYRQNSNLVLQRDPYLTGAPGGAHQGEPTGEPESLAGRKLYPMGDKAER 64 MAE +E+FKRFEYR NSNLVLQR+ ++ EPTGE ESL GR Y MGDK E Sbjct 1 MAEEYEKFKRFEYRMNSNLVLQREGPISNTK------EPTGESESLVGRLKYKMGDKVEY 54 Query 65 GLKK-------EEKEKIGKRRNKLKE 83 K ++ +++ RNK K+ Sbjct 55 SNKNKKNIMLVQDNKEMAINRNKRKD 80 > tpv:TP03_0747 ATP-dependent RNA helicase; K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13] Length=2249 Score = 72.0 bits (175), Expect = 4e-13, Method: Composition-based stats. Identities = 48/104 (46%), Positives = 60/104 (57%), Gaps = 12/104 (11%) Query 5 MAEAFERFKRFEYRQNSNLVLQRDPYLTGAPGGAHQGEPTGEPESLAGRKLYPMGDKA-E 63 MAE F RF RF YR NSNLV+QR+ AP E TGEPESLAGR L+ MGDK Sbjct 1 MAEHFVRFNRFNYRNNSNLVIQRE---GPAP---RLDESTGEPESLAGRILHKMGDKVMH 54 Query 64 RGLKKEEKEKIGKRRNKLKEGGIAKRAK--LDIKKGSTVLDADV 105 +K + K KR + + ++R K LDI +G VL+ D+ Sbjct 55 EAIKPKLKN---KRAAQTVQDEPSRRRKTFLDISRGENVLNIDI 95 > cpv:cgd5_2960 U5snrp Brr2 SFII RNA helicase (sec63 and the second part of the RNA Length=1204 Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats. Identities = 29/63 (46%), Positives = 36/63 (57%), Gaps = 7/63 (11%) Query 5 MAEAFERFKRFEYRQNSNLVLQRDPYLTGAPGGAHQGEPTGEPESLAGRKLYPMGDKAER 64 MA+ +E KRF Y+ NSNLV+Q + + PTGE ESLAGR Y MGD A + Sbjct 1 MADDYEMSKRFGYKANSNLVIQTSQR-------SRENVPTGEAESLAGRIKYKMGDLANK 53 Query 65 GLK 67 K Sbjct 54 RAK 56 > ath:AT1G20960 emb1507 (embryo defective 1507); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / nucleoside-triphosphatase/ nucleotide binding; K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13] Length=2171 Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/62 (50%), Positives = 38/62 (61%), Gaps = 9/62 (14%) Query 6 AEAFERFKRFEYRQNSNLVLQRDPYLTGAPGGAHQGEPTGEPESLAGRKLYP--MGDKAE 63 AEA RFK++EYR NS+LVL D P H EPTGEPE+L G K+ P GD+ Sbjct 8 AEAHARFKQYEYRANSSLVLTTD----NRPRDTH--EPTGEPETLWG-KIDPRSFGDRVA 60 Query 64 RG 65 +G Sbjct 61 KG 62 > cel:Y46G5A.4 hypothetical protein; K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13] Length=2145 Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 27/63 (42%), Positives = 38/63 (60%), Gaps = 5/63 (7%) Query 5 MAEAFERFKRFEYRQNSNLVLQRDPYLTGAPGGAHQGEPTGEPESLAGRKL--YPMGDKA 62 MA+ R +++EYRQNSNLVL D LT G + EPTGE + +++ MGD+A Sbjct 1 MADELARIQQYEYRQNSNLVLSVDYNLTDRRG---REEPTGEVLPITDKEMRKMKMGDRA 57 Query 63 ERG 65 +G Sbjct 58 IKG 60 > hsa:23020 SNRNP200, ASCC3L1, BRR2, FLJ11521, HELIC2, RP33, U5-200KD; small nuclear ribonucleoprotein 200kDa (U5) (EC:3.6.4.13); K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13] Length=2136 Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 4/61 (6%) Query 5 MAEAFERFKRFEYRQNSNLVLQRDPYLTGAPGGAHQGEPTGEPESLAGR-KLYPMGDKAE 63 MA+ R ++EY+ NSNLVLQ D L + EPTGE SL G+ + MGDKA+ Sbjct 1 MADVTARSLQYEYKANSNLVLQADRSLIDR---TRRDEPTGEVLSLVGKLEGTRMGDKAQ 57 Query 64 R 64 R Sbjct 58 R 58 > mmu:320632 Snrnp200, A330064G03Rik, Ascc3l1, BC011390, HELIC2, KIAA0788, U5-200-KD, U5-200KD; small nuclear ribonucleoprotein 200 (U5) (EC:3.6.4.13); K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13] Length=2136 Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats. Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 4/61 (6%) Query 5 MAEAFERFKRFEYRQNSNLVLQRDPYLTGAPGGAHQGEPTGEPESLAGR-KLYPMGDKAE 63 MA+ R ++EY+ NSNLVLQ D L + EPTGE SL G+ + MGDKA+ Sbjct 1 MADVTARSLQYEYKANSNLVLQADRSLIDR---TRRDEPTGEVLSLVGKLEGTRMGDKAQ 57 Query 64 R 64 R Sbjct 58 R 58 > dre:799690 fb63a09; wu:fb63a09 (EC:3.6.4.13); K12854 pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13] Length=2134 Score = 42.0 bits (97), Expect = 5e-04, Method: Composition-based stats. Identities = 26/61 (42%), Positives = 36/61 (59%), Gaps = 4/61 (6%) Query 5 MAEAFERFKRFEYRQNSNLVLQRDPYLTGAPGGAHQGEPTGEPESLAGR-KLYPMGDKAE 63 MA+ R ++EY+ NSNLVLQ D L + EPTGE SL G+ + MGD+++ Sbjct 1 MADVTARSLQYEYKANSNLVLQADRSLIDR---TRRDEPTGEVLSLVGKLEGTKMGDRSQ 57 Query 64 R 64 R Sbjct 58 R 58 > ath:AT2G42270 U5 small nuclear ribonucleoprotein helicase, putative Length=2172 Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust. Identities = 30/77 (38%), Positives = 40/77 (51%), Gaps = 9/77 (11%) Query 6 AEAFERFKRFEYRQNSNLVLQRDPYLTGAPGGAHQGEPTGEPESLAGRKLYP--MGDKAE 63 AE R K++ Y+ NS+LVL D H E +GEPESL GR + P GD+ Sbjct 9 AEEQARLKQYGYKVNSSLVLNSDE----RRRDTH--ESSGEPESLRGR-IDPKSFGDRVV 61 Query 64 RGLKKEEKEKIGKRRNK 80 RG E E++ K + K Sbjct 62 RGRPHELDERLNKSKKK 78 > cel:Y57A10A.15 hypothetical protein; K02332 DNA polymerase gamma 1 [EC:2.7.7.7] Length=1072 Score = 32.0 bits (71), Expect = 0.44, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 5/56 (8%) Query 45 GEPESLAGRKLYPMGDKAERGLKKEEKEKIGKRRNKLKEGGIAKRAKLDIKKGSTV 100 G E+ AG+ L +G GLK+ E E + KL +G +AK K+D++ V Sbjct 763 GSGETHAGKHLMRVG-----GLKQSEAESTASQLFKLTKGDVAKYMKVDVRMNCVV 813 > cel:Y45F3A.2 rab-30; RAB family member (rab-30); K07917 Ras-related protein Rab-30 Length=216 Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust. Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 7/72 (9%) Query 10 ERFKRFE---YRQNSNLVLQRDPYLTGAPGGAHQGEPTGEPESLAGRKLYPM--GDKAER 64 ERF+ YR +VL D ++ P E GE ES A R++ + G+K ++ Sbjct 67 ERFRSITQSYYRSAHAIVLVYD--VSCQPSFDCLPEWLGEIESYANRRVLKILVGNKVDK 124 Query 65 GLKKEEKEKIGK 76 G ++E E+IG+ Sbjct 125 GDEREVPERIGR 136 > hsa:2814 GP5, CD42d; glycoprotein V (platelet); K06260 platelet glycoprotein V Length=560 Score = 30.4 bits (67), Expect = 1.3, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 7/77 (9%) Query 6 AEAFERFKRFEYRQNSNLVLQRDPYLTGAPGGAHQGEPTGEPESLAGRKLYPMGDKAERG 65 A AF R Y L + P L+ P GA QG + +L L + D RG Sbjct 307 AAAFRNLSRLRY-----LGVTLSPRLSALPQGAFQGLGELQVLALHSNGLTALPDGLLRG 361 Query 66 LKKEEKEKIGKRRNKLK 82 L K ++ RRN+L+ Sbjct 362 LGK--LRQVSLRRNRLR 376 > hsa:55726 C12orf11, FLJ10630, FLJ10637, NET48; chromosome 12 open reading frame 11 Length=706 Score = 29.6 bits (65), Expect = 2.3, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Query 43 PTGEPESLAGRKLYPMGDKAERGLKKEEKEKIGKRRNKLKEGGIAKRAKLDIKKGSTVLD 102 P E GRK DK+E+ +K E+EK + +LK GI +R K ++ + + D Sbjct 565 PEEEERKKRGRKREDKEDKSEKAVKDYEQEKSWQDSERLK--GILERGKEELAEAEIIKD 622 Query 103 A 103 + Sbjct 623 S 623 Lambda K H 0.310 0.133 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2007980300 Database: egene_temp_file_orthology_annotation_similarity_blast_database_866 Posted date: Sep 17, 2011 2:57 PM Number of letters in database: 82,071,388 Number of sequences in database: 164,496 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40