bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
164,496 sequences; 82,071,388 total letters
Query= Eten_8698_orf1
Length=65
Score E
Sequences producing significant alignments: (Bits) Value
tgo:TGME49_010360 DEAD/DEAH box helicase, putative (EC:5.99.1.... 123 1e-28
ath:AT5G51280 DEAD-box protein abstrakt, putative; K13116 ATP-... 105 2e-23
ath:AT4G33370 DEAD-box protein abstrakt, putative 104 6e-23
pfa:PFE1390w RNA helicase-1; K13116 ATP-dependent RNA helicase... 102 3e-22
cpv:cgd7_4600 abstrakt protein SF II helicase + Znknuckle C2HC... 94.4 8e-20
mmu:72935 Ddx41, 2900024F02Rik, AA958953, ABS, AI324246; DEAD ... 92.8 2e-19
hsa:51428 DDX41, ABS, MGC8828; DEAD (Asp-Glu-Ala-Asp) box poly... 92.8 3e-19
cel:H27M09.1 hypothetical protein; K13116 ATP-dependent RNA he... 85.1 6e-17
tpv:TP02_0316 RNA helicase-1; K13116 ATP-dependent RNA helicas... 76.3 2e-14
bbo:BBOV_IV001840 21.m02846; DEAD/DEAH box helicase (EC:3.6.1.... 40.4 0.001
dre:30116 pl10, etID309900.24, p110, p110a, pl10a, wu:fb43h11,... 40.0 0.002
hsa:1654 DDX3X, DBX, DDX14, DDX3, HLP2; DEAD (Asp-Glu-Ala-Asp)... 39.7 0.002
dre:566947 ddx3, fb74g09, wu:fb74g09, zgc:158804; DEAD (Asp-Gl... 38.9 0.004
tpv:TP04_0265 small nuclear ribonucleoprotein; K12858 ATP-depe... 38.9 0.004
mmu:110957 D1Pas1, AU016353, Pl10; DNA segment, Chr 1, Pasteur... 38.9 0.004
mmu:13205 Ddx3x, D1Pas1-rs2, Ddx3, Fin14; DEAD/H (Asp-Glu-Ala-... 38.5 0.006
xla:397935 an3; ATP dependent RNA helicase (EC:3.6.4.13); K115... 38.1 0.007
xla:379975 ddx3x, MGC52935, pl10; DEAD (Asp-Glu-Ala-Asp) box p... 37.7 0.008
sce:YOR204W DED1, SPP81; ATP-dependent DEAD (Asp-Glu-Ala-Asp)-... 37.7 0.008
mmu:26900 Ddx3y, 8030469F12Rik, D1Pas1-rs1, Dby; DEAD (Asp-Glu... 37.7 0.009
hsa:8653 DDX3Y, DBY; DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,... 37.0 0.017
cel:Y71H2AM.19 hypothetical protein; K11594 ATP-dependent RNA ... 37.0 0.017
tgo:TGME49_098020 DEAD-box ATP-dependent RNA helicase, putativ... 36.6 0.018
tpv:TP03_0478 RNA helicase; K11594 ATP-dependent RNA helicase ... 36.6 0.019
cpv:cgd4_3000 Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+H... 36.2 0.027
ath:AT3G58570 DEAD box RNA helicase, putative; K11594 ATP-depe... 35.0 0.058
pfa:PFE0925c snrnp protein, putative; K12858 ATP-dependent RNA... 34.7 0.071
ath:AT3G58510 DEAD box RNA helicase, putative (RH11); K11594 A... 34.3 0.092
cpv:cgd3_3690 U5 snRNP 100 kD protein ; K12858 ATP-dependent R... 33.1 0.23
ath:AT2G42520 DEAD box RNA helicase, putative; K11594 ATP-depe... 32.7 0.30
sce:YPL119C DBP1, LPH8; Dbp1p (EC:3.6.1.-); K11594 ATP-depende... 31.2 0.83
cpv:cgd2_1010 hypothetical protein ; K12823 ATP-dependent RNA ... 31.2 0.90
tgo:TGME49_026250 ATP-dependent RNA helicase, putative ; K1159... 31.2 0.96
cpv:cgd8_800 Prp5p C terminal KH. eIF4A-1-family RNA SFII heli... 30.8 1.0
tgo:TGME49_113240 DEAD/DEAH box helicase, putative (EC:5.99.1.... 30.8 1.1
bbo:BBOV_II003280 18.m06276; DEAD box RNA helicase; K12858 ATP... 30.8 1.2
sce:YNL112W DBP2; Dbp2p (EC:3.6.1.-); K12823 ATP-dependent RNA... 30.4 1.4
tgo:TGME49_053090 ATP-dependent RNA helicase, putative ; K1477... 30.4 1.5
dre:334283 ddx23, wu:fi39b12, zgc:63742; DEAD (Asp-Glu-Ala-Asp... 30.0 2.1
cpv:cgd3_2330 hypothetical protein ; K14808 ATP-dependent RNA ... 29.3 3.3
cel:C46F11.4 hypothetical protein; K12835 ATP-dependent RNA he... 28.9 4.0
sce:YGL171W ROK1; ATP-dependent RNA helicase of the DEAD box f... 28.1 6.7
> tgo:TGME49_010360 DEAD/DEAH box helicase, putative (EC:5.99.1.3);
K13116 ATP-dependent RNA helicase DDX41 [EC:3.6.4.13]
Length=657
Score = 123 bits (309), Expect = 1e-28, Method: Composition-based stats.
Identities = 55/61 (90%), Positives = 59/61 (96%), Gaps = 0/61 (0%)
Query 5 VDPIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKTEPPALVFCENKKDVDDIQE 64
+DP+VVNVGRAGAANLDV+QEVEYVKQENKLPYLLHCLQKT PP L+FCENKKDVDDIQE
Sbjct 418 IDPLVVNVGRAGAANLDVVQEVEYVKQENKLPYLLHCLQKTAPPVLIFCENKKDVDDIQE 477
Query 65 Y 65
Y
Sbjct 478 Y 478
> ath:AT5G51280 DEAD-box protein abstrakt, putative; K13116 ATP-dependent
RNA helicase DDX41 [EC:3.6.4.13]
Length=591
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 53/65 (81%), Gaps = 0/65 (0%)
Query 1 RRVDVDPIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKTEPPALVFCENKKDVD 60
R V P+ VNVGRAGAANLDVIQEVEYVKQE K+ YLL CLQKT PP L+FCENK DVD
Sbjct 352 RSALVKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFCENKADVD 411
Query 61 DIQEY 65
DI EY
Sbjct 412 DIHEY 416
> ath:AT4G33370 DEAD-box protein abstrakt, putative
Length=542
Score = 104 bits (260), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 49/61 (80%), Positives = 52/61 (85%), Gaps = 0/61 (0%)
Query 5 VDPIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKTEPPALVFCENKKDVDDIQE 64
V P+ VNVGRAGAANLDVIQEVEYVKQE K+ YLL CLQKT PP L+FCENK DVDDI E
Sbjct 307 VKPVTVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTTPPVLIFCENKADVDDIHE 366
Query 65 Y 65
Y
Sbjct 367 Y 367
> pfa:PFE1390w RNA helicase-1; K13116 ATP-dependent RNA helicase
DDX41 [EC:3.6.4.13]
Length=665
Score = 102 bits (254), Expect = 3e-22, Method: Composition-based stats.
Identities = 48/61 (78%), Positives = 54/61 (88%), Gaps = 0/61 (0%)
Query 5 VDPIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKTEPPALVFCENKKDVDDIQE 64
V+PI++NVGRAGAANLDVIQEVEYVK+E KL YLL LQKT PP L+FCENKKDVDD+ E
Sbjct 427 VNPIIINVGRAGAANLDVIQEVEYVKEEFKLSYLLEVLQKTGPPVLIFCENKKDVDDVHE 486
Query 65 Y 65
Y
Sbjct 487 Y 487
> cpv:cgd7_4600 abstrakt protein SF II helicase + Znknuckle C2HC
(PA) ; K13116 ATP-dependent RNA helicase DDX41 [EC:3.6.4.13]
Length=570
Score = 94.4 bits (233), Expect = 8e-20, Method: Composition-based stats.
Identities = 44/61 (72%), Positives = 50/61 (81%), Gaps = 0/61 (0%)
Query 5 VDPIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKTEPPALVFCENKKDVDDIQE 64
+DP+VVNVGRAGAANL VIQE EYV+QE +L LL CLQKT P L+F ENKKDVD+I E
Sbjct 333 IDPVVVNVGRAGAANLRVIQEFEYVRQERRLVSLLSCLQKTAPRVLIFSENKKDVDEIHE 392
Query 65 Y 65
Y
Sbjct 393 Y 393
> mmu:72935 Ddx41, 2900024F02Rik, AA958953, ABS, AI324246; DEAD
(Asp-Glu-Ala-Asp) box polypeptide 41 (EC:3.6.4.13); K13116
ATP-dependent RNA helicase DDX41 [EC:3.6.4.13]
Length=622
Score = 92.8 bits (229), Expect = 2e-19, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 49/61 (80%), Gaps = 0/61 (0%)
Query 5 VDPIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKTEPPALVFCENKKDVDDIQE 64
V P+ +NVGRAGAA+LDVIQEVEYVK+E K+ YLL CLQKT PP L+F E K DVD I E
Sbjct 391 VKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHE 450
Query 65 Y 65
Y
Sbjct 451 Y 451
> hsa:51428 DDX41, ABS, MGC8828; DEAD (Asp-Glu-Ala-Asp) box polypeptide
41 (EC:3.6.4.13); K13116 ATP-dependent RNA helicase
DDX41 [EC:3.6.4.13]
Length=622
Score = 92.8 bits (229), Expect = 3e-19, Method: Composition-based stats.
Identities = 43/61 (70%), Positives = 49/61 (80%), Gaps = 0/61 (0%)
Query 5 VDPIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKTEPPALVFCENKKDVDDIQE 64
V P+ +NVGRAGAA+LDVIQEVEYVK+E K+ YLL CLQKT PP L+F E K DVD I E
Sbjct 391 VKPVTINVGRAGAASLDVIQEVEYVKEEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHE 450
Query 65 Y 65
Y
Sbjct 451 Y 451
> cel:H27M09.1 hypothetical protein; K13116 ATP-dependent RNA
helicase DDX41 [EC:3.6.4.13]
Length=630
Score = 85.1 bits (209), Expect = 6e-17, Method: Composition-based stats.
Identities = 40/61 (65%), Positives = 49/61 (80%), Gaps = 0/61 (0%)
Query 5 VDPIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKTEPPALVFCENKKDVDDIQE 64
V PIVVNVGRAGAA+L+V+QE+E+V+ ENKL +L CLQKT P L+F E K DVD+I E
Sbjct 400 VKPIVVNVGRAGAASLNVLQELEFVRSENKLVRVLECLQKTSPKVLIFAEKKVDVDNIYE 459
Query 65 Y 65
Y
Sbjct 460 Y 460
> tpv:TP02_0316 RNA helicase-1; K13116 ATP-dependent RNA helicase
DDX41 [EC:3.6.4.13]
Length=598
Score = 76.3 bits (186), Expect = 2e-14, Method: Composition-based stats.
Identities = 37/60 (61%), Positives = 46/60 (76%), Gaps = 0/60 (0%)
Query 6 DPIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKTEPPALVFCENKKDVDDIQEY 65
+PIVVNVG +G+AN +V Q V V +E+KLP LL CL+KT PP L+FCENK DV+ I EY
Sbjct 413 NPIVVNVGVSGSANKNVKQVVVAVPKESKLPMLLQCLKKTPPPVLIFCENKADVEIINEY 472
> bbo:BBOV_IV001840 21.m02846; DEAD/DEAH box helicase (EC:3.6.1.-);
K11594 ATP-dependent RNA helicase [EC:3.6.4.13]
Length=609
Score = 40.4 bits (93), Expect = 0.001, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query 6 DPIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQK-TEPPALVFCENKKDVDDIQE 64
D + + VGR G+ N + Q + Y QE KL YL+ L++ T L+F E K+ D I+
Sbjct 364 DYLYLAVGRVGSTNEFIRQRLLYADQEQKLHYLVKLLRENTNGLVLIFVETKRRADMIES 423
Query 65 Y 65
Y
Sbjct 424 Y 424
> dre:30116 pl10, etID309900.24, p110, p110a, pl10a, wu:fb43h11,
wu:fy72b06; pl10; K11594 ATP-dependent RNA helicase [EC:3.6.4.13]
Length=688
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query 6 DPIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKT--EPPALVFCENKKDVDDIQ 63
D I + VGR G+ + ++ Q+V +V++ +K +LL L T + LVF E KK D ++
Sbjct 431 DYIFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALE 490
Query 64 EY 65
++
Sbjct 491 DF 492
> hsa:1654 DDX3X, DBX, DDX14, DDX3, HLP2; DEAD (Asp-Glu-Ala-Asp)
box polypeptide 3, X-linked (EC:3.6.4.13); K11594 ATP-dependent
RNA helicase [EC:3.6.4.13]
Length=661
Score = 39.7 bits (91), Expect = 0.002, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query 8 IVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKT--EPPALVFCENKKDVDDIQEY 65
I + VGR G+ + ++ Q+V +V++ +K +LL L T + LVF E KK D ++++
Sbjct 401 IFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDF 460
> dre:566947 ddx3, fb74g09, wu:fb74g09, zgc:158804; DEAD (Asp-Glu-Ala-Asp)
box polypeptide 3; K11594 ATP-dependent RNA helicase
[EC:3.6.4.13]
Length=709
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query 8 IVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKT--EPPALVFCENKKDVDDIQEY 65
I + VGR G+ + ++ Q+V +V++ +K +LL L T + LVF E KK D ++++
Sbjct 449 IFLAVGRVGSTSENITQKVVWVEENDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDF 508
> tpv:TP04_0265 small nuclear ribonucleoprotein; K12858 ATP-dependent
RNA helicase DDX23/PRP28 [EC:3.6.4.13]
Length=744
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 0/59 (0%)
Query 7 PIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKTEPPALVFCENKKDVDDIQEY 65
P +++G G + Q +++V++ K +L L+ EPP ++F KK+ D I ++
Sbjct 559 PAFISIGDVGGGKTSITQRLDFVQESKKTRHLEETLETLEPPIIIFVNLKKNTDVIAKH 617
> mmu:110957 D1Pas1, AU016353, Pl10; DNA segment, Chr 1, Pasteur
Institute 1 (EC:3.6.4.13); K11594 ATP-dependent RNA helicase
[EC:3.6.4.13]
Length=660
Score = 38.9 bits (89), Expect = 0.004, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query 8 IVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKT--EPPALVFCENKKDVDDIQEY 65
I + VGR G+ + ++ Q+V +V++ +K +LL L T + LVF E KK D ++++
Sbjct 400 IFLAVGRVGSTSENITQKVVWVEEADKRSFLLDLLNATGKDSLILVFVETKKGADSLEDF 459
> mmu:13205 Ddx3x, D1Pas1-rs2, Ddx3, Fin14; DEAD/H (Asp-Glu-Ala-Asp/His)
box polypeptide 3, X-linked (EC:3.6.4.13); K11594
ATP-dependent RNA helicase [EC:3.6.4.13]
Length=662
Score = 38.5 bits (88), Expect = 0.006, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query 8 IVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKT--EPPALVFCENKKDVDDIQEY 65
I + VGR G+ + ++ Q+V +V++ +K +LL L T + LVF E KK D ++++
Sbjct 401 IFLAVGRVGSTSENITQKVVWVEEIDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDF 460
> xla:397935 an3; ATP dependent RNA helicase (EC:3.6.4.13); K11594
ATP-dependent RNA helicase [EC:3.6.4.13]
Length=697
Score = 38.1 bits (87), Expect = 0.007, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query 8 IVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKT--EPPALVFCENKKDVDDIQEY 65
I + VGR G+ + ++ Q+V +V++ +K +LL L T + LVF E KK D ++++
Sbjct 442 IFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDF 501
> xla:379975 ddx3x, MGC52935, pl10; DEAD (Asp-Glu-Ala-Asp) box
polypeptide 3, X-linked; K11594 ATP-dependent RNA helicase
[EC:3.6.4.13]
Length=697
Score = 37.7 bits (86), Expect = 0.008, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query 8 IVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKT--EPPALVFCENKKDVDDIQEY 65
I + VGR G+ + ++ Q+V +V++ +K +LL L T + LVF E KK D ++++
Sbjct 442 IFLAVGRVGSTSENITQKVVWVEEMDKRSFLLDLLNATGKDSLTLVFVETKKGADALEDF 501
> sce:YOR204W DED1, SPP81; ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box
RNA helicase, required for translation initiation of all
yeast mRNAs; mutations in human DEAD-box DBY are a frequent
cause of male infertility (EC:3.6.1.-); K11594 ATP-dependent
RNA helicase [EC:3.6.4.13]
Length=604
Score = 37.7 bits (86), Expect = 0.008, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query 6 DPIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQ-KTEPPALVFCENKKDVDDIQE 64
D I ++VGR G+ + ++ Q+V YV+ ++K LL L T+ L+F E K+ D + +
Sbjct 358 DYIFLSVGRVGSTSENITQKVLYVENQDKKSALLDLLSASTDGLTLIFVETKRMADQLTD 417
Query 65 Y 65
+
Sbjct 418 F 418
> mmu:26900 Ddx3y, 8030469F12Rik, D1Pas1-rs1, Dby; DEAD (Asp-Glu-Ala-Asp)
box polypeptide 3, Y-linked (EC:3.6.4.13); K11594
ATP-dependent RNA helicase [EC:3.6.4.13]
Length=658
Score = 37.7 bits (86), Expect = 0.009, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query 8 IVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKT--EPPALVFCENKKDVDDIQEY 65
I + VGR G+ + ++ Q+V +V++ +K +LL L T + LVF E KK D ++ +
Sbjct 400 IFLAVGRVGSTSENITQKVVWVEELDKRSFLLDLLNATGKDSLTLVFVETKKGADSLENF 459
> hsa:8653 DDX3Y, DBY; DEAD (Asp-Glu-Ala-Asp) box polypeptide
3, Y-linked (EC:3.6.4.13); K11594 ATP-dependent RNA helicase
[EC:3.6.4.13]
Length=660
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query 8 IVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKT--EPPALVFCENKKDVDDIQEY 65
I + VGR G+ + ++ Q+V +V+ +K +LL L T + LVF E KK D ++++
Sbjct 399 IFLAVGRVGSTSENITQKVVWVEDLDKRSFLLDILGATGSDSLTLVFVETKKGADSLEDF 458
> cel:Y71H2AM.19 hypothetical protein; K11594 ATP-dependent RNA
helicase [EC:3.6.4.13]
Length=643
Score = 37.0 bits (84), Expect = 0.017, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query 8 IVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKTEPPA--LVFCENKKDVDDIQEY 65
+ + VGR G+ + +++Q++ +V+++ K YL+ L T + LVF E K+ D+ Y
Sbjct 387 VFLAVGRVGSTSENIMQKIVWVEEDEKRSYLMDLLDATGDSSLTLVFVETKRGASDLAYY 446
> tgo:TGME49_098020 DEAD-box ATP-dependent RNA helicase, putative
(EC:2.7.11.25); K12858 ATP-dependent RNA helicase DDX23/PRP28
[EC:3.6.4.13]
Length=1158
Score = 36.6 bits (83), Expect = 0.018, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 0/54 (0%)
Query 7 PIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKTEPPALVFCENKKDVD 60
P +++G GA + Q VE+V + K L L+ PP +VF KK D
Sbjct 967 PSYISIGDPGAGKRAIEQRVEFVPEARKKQRLQDVLENATPPVMVFVNQKKSAD 1020
> tpv:TP03_0478 RNA helicase; K11594 ATP-dependent RNA helicase
[EC:3.6.4.13]
Length=741
Score = 36.6 bits (83), Expect = 0.019, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query 6 DPIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKTEPPA---LVFCENKKDVDDI 62
D I + VGR G+ N + Q + Y Q+ K+ YL+ L+ L+F E KK D I
Sbjct 498 DYIYLAVGRVGSTNEFIKQRLLYADQDQKIKYLIKLLRDNTNLGGLVLIFVETKKRADLI 557
Query 63 QEY 65
+ Y
Sbjct 558 EGY 560
> cpv:cgd4_3000 Dbp1p, eIF4a-1 family RNA SFII helicase (DEXDC+HELICc)
; K11594 ATP-dependent RNA helicase [EC:3.6.4.13]
Length=702
Score = 36.2 bits (82), Expect = 0.027, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query 8 IVVNVGRAGAANLDVIQEVEYVKQENKLPYLL--HCLQKTEPPALVFCENKKDVDDIQEY 65
I + VGR GA + ++Q V Y ++++K P LL L++ E +VF E K+ D I+++
Sbjct 420 IFLTVGRVGATSGSIVQRVVYAEEDHK-PRLLVKLLLEQGEGLTVVFVEMKRRADQIEDF 478
> ath:AT3G58570 DEAD box RNA helicase, putative; K11594 ATP-dependent
RNA helicase [EC:3.6.4.13]
Length=646
Score = 35.0 bits (79), Expect = 0.058, Method: Composition-based stats.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query 8 IVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCL--------QKTEPPALVFCENKKDV 59
I + VGR G++ ++Q VE+V +K +L+ L Q + LVF E KK
Sbjct 359 IFLAVGRVGSSTDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGA 418
Query 60 DDIQEY 65
D ++ +
Sbjct 419 DSLENW 424
> pfa:PFE0925c snrnp protein, putative; K12858 ATP-dependent RNA
helicase DDX23/PRP28 [EC:3.6.4.13]
Length=1123
Score = 34.7 bits (78), Expect = 0.071, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 0/58 (0%)
Query 7 PIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKTEPPALVFCENKKDVDDIQE 64
P +++G GA + Q++E++ + K L L+ EPP +VF KK D I +
Sbjct 928 PAYISIGDPGAGKRSIEQKLEFLTEGKKKQKLQEILEMYEPPIIVFVNQKKVADIISK 985
> ath:AT3G58510 DEAD box RNA helicase, putative (RH11); K11594
ATP-dependent RNA helicase [EC:3.6.4.13]
Length=612
Score = 34.3 bits (77), Expect = 0.092, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 6/64 (9%)
Query 8 IVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCL------QKTEPPALVFCENKKDVDD 61
I + VGR G++ + Q VE+V++ +K +L+ L Q + LVF E K+ D
Sbjct 364 IFLAVGRVGSSTDLITQRVEFVQESDKRSHLMDLLHAQRETQDKQSLTLVFVETKRGADT 423
Query 62 IQEY 65
++ +
Sbjct 424 LENW 427
> cpv:cgd3_3690 U5 snRNP 100 kD protein ; K12858 ATP-dependent
RNA helicase DDX23/PRP28 [EC:3.6.4.13]
Length=529
Score = 33.1 bits (74), Expect = 0.23, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query 7 PIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKTE---PPALVFCENKKDVD 60
PI V +G GA + Q + ++ + K L++ L E PP +VF KK VD
Sbjct 354 PINVTIGDIGAGKKSIQQILNFISENKKKSTLINTLNNKELAVPPIIVFLNQKKMVD 410
> ath:AT2G42520 DEAD box RNA helicase, putative; K11594 ATP-dependent
RNA helicase [EC:3.6.4.13]
Length=633
Score = 32.7 bits (73), Expect = 0.30, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query 8 IVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCL--------QKTEPPALVFCENKKDV 59
I + VGR G++ ++Q VE+V +K +L+ L Q + LVF E K+
Sbjct 372 IFLAVGRVGSSTDLIVQRVEFVLDSDKRSHLMDLLHAQRENGIQGKQALTLVFVETKRGA 431
Query 60 DDIQEY 65
D ++ +
Sbjct 432 DSLENW 437
> sce:YPL119C DBP1, LPH8; Dbp1p (EC:3.6.1.-); K11594 ATP-dependent
RNA helicase [EC:3.6.4.13]
Length=617
Score = 31.2 bits (69), Expect = 0.83, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query 8 IVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKTEPP-ALVFCENKKDVDDIQEY 65
I ++VGR G+ + ++ Q + YV +K LL L L+F E K+ D + ++
Sbjct 372 IFLSVGRVGSTSENITQRILYVDDMDKKSALLDLLSAEHKGLTLIFVETKRMADQLTDF 430
> cpv:cgd2_1010 hypothetical protein ; K12823 ATP-dependent RNA
helicase DDX5/DBP2 [EC:3.6.4.13]
Length=586
Score = 31.2 bits (69), Expect = 0.90, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Query 7 PIVVNVGRAGA--ANLDVIQEVEYVKQENKLP----YLLHCLQKTEPPALVFCENKKDVD 60
PI +NVG A A+ ++ Q V V++ K +L + ++ P L+FCE K+ D
Sbjct 372 PIHINVGSVDALKASHNIKQYVNVVEESEKKAKLKMFLGQVMVESAPKVLIFCETKRGAD 431
> tgo:TGME49_026250 ATP-dependent RNA helicase, putative ; K11594
ATP-dependent RNA helicase [EC:3.6.4.13]
Length=734
Score = 31.2 bits (69), Expect = 0.96, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query 6 DPIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKTEPP-ALVFCENKKDVDDIQE 64
D I + VGR G+ N + Q ++Y ++ KL L+ L++TE ++F E K+ D I++
Sbjct 470 DYIYLAVGRVGSTNEFIRQRLQYADEDQKLKLLVKLLRETEKGLTIIFVETKRKADMIED 529
Query 65 Y 65
Y
Sbjct 530 Y 530
> cpv:cgd8_800 Prp5p C terminal KH. eIF4A-1-family RNA SFII helicase
Length=934
Score = 30.8 bits (68), Expect = 1.0, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query 6 DPIVVNVGRAGAANLDVIQEVEYVKQEN-KLPYLLHCLQKTEPPAL--VFCENKKDVDDI 62
+PI V VG+ G N +V Q +E + EN + LL L + L +FC + DVD++
Sbjct 440 NPIQVIVGKKGQMNQNVKQYIELLNNENDQFLRLLQLLGEWAEFGLIVIFCNRQTDVDEL 499
> tgo:TGME49_113240 DEAD/DEAH box helicase, putative (EC:5.99.1.3);
K12823 ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13]
Length=685
Score = 30.8 bits (68), Expect = 1.1, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query 8 IVVNVGRAG-AANLDVIQEVEYVKQENKLPYLLHCLQK--TEPPALVFCENKKDVDDI 62
+ + VG+A AN +V Q +E V LL LQ+ T L+FCE K+ D +
Sbjct 495 VKLQVGKADLQANANVTQRIEVVSSNQLQHRLLSVLQEEVTGQKTLIFCETKRQCDQL 552
> bbo:BBOV_II003280 18.m06276; DEAD box RNA helicase; K12858 ATP-dependent
RNA helicase DDX23/PRP28 [EC:3.6.4.13]
Length=714
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 0/59 (0%)
Query 7 PIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKTEPPALVFCENKKDVDDIQEY 65
P++V++G G+ + Q E++ + K L L E +VF KK D + +
Sbjct 527 PVIVSIGDVGSGKKSITQRFEFITEHRKKQKLQDLLHTLEGQIIVFVNMKKVADVVARH 585
> sce:YNL112W DBP2; Dbp2p (EC:3.6.1.-); K12823 ATP-dependent RNA
helicase DDX5/DBP2 [EC:3.6.4.13]
Length=546
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query 6 DPIVVNVGR---AGAANLDVIQEV--EYVKQENKLPYLLHCLQKTEPPALVFCENKKDVD 60
DPI V VG + + N+ I EV ++ K++ YL Q E L+F K+ D
Sbjct 315 DPIQVQVGSLELSASHNITQIVEVVSDFEKRDRLNKYLETASQDNEYKTLIFASTKRMCD 374
Query 61 DIQEY 65
DI +Y
Sbjct 375 DITKY 379
> tgo:TGME49_053090 ATP-dependent RNA helicase, putative ; K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:3.6.4.13]
Length=652
Score = 30.4 bits (67), Expect = 1.5, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query 6 DPIVVNVGRAGAANLDVIQEVEY-VKQENKLPYL--LHCLQKTEPPALVFCENKK 57
+P+ +++G AA + QE+ + +E KL L LH K PP L+F ++K+
Sbjct 418 NPVHISIGSPNAAATSIEQELLFCTNEEGKLLALRTLHLTGKFVPPVLIFVQSKE 472
> dre:334283 ddx23, wu:fi39b12, zgc:63742; DEAD (Asp-Glu-Ala-Asp)
box polypeptide 23 (EC:3.6.1.-); K12858 ATP-dependent RNA
helicase DDX23/PRP28 [EC:3.6.4.13]
Length=807
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query 7 PIVVNVGRAGAANLDVIQEVEYVKQENKLPYLLHCLQKT-EPPALVFCENKKDVD 60
P VV +G AG + V Q+V + + K LL L EPP ++F KK D
Sbjct 611 PAVVYIGSAGKPHERVEQKVILMSEGEKRKKLLEVLASGFEPPIIIFVNQKKGCD 665
> cpv:cgd3_2330 hypothetical protein ; K14808 ATP-dependent RNA
helicase DDX54/DBP10 [EC:3.6.4.13]
Length=862
Score = 29.3 bits (64), Expect = 3.3, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query 28 YVKQENKLPYLLHCLQKTEPP---ALVFCENKKDVDDI 62
+V+++ KL LL+ L+ T P A++FC K VD I
Sbjct 226 FVREDEKLASLLYLLRNTIPSHERAIIFCATKHHVDYI 263
> cel:C46F11.4 hypothetical protein; K12835 ATP-dependent RNA
helicase DDX42 [EC:3.6.4.13]
Length=811
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query 1 RRVDVDPIVVNVGRAGAANLDVIQEVEYVK-QENKLPYLLHCLQK--TEPPALVFCENKK 57
R VDP+ + G G AN D+ Q+V ++ Q+ KL +L+ L + + L+F K
Sbjct 463 RDALVDPVRIVQGEVGEANADIEQKVFVMQNQDVKLHWLIRNLVEFASLGKVLIFVTKKL 522
Query 58 DVDDI 62
D +D+
Sbjct 523 DSEDV 527
> sce:YGL171W ROK1; ATP-dependent RNA helicase of the DEAD box
family; required for 18S rRNA synthesis (EC:3.6.1.-); K14779
ATP-dependent RNA helicase DDX52/ROK1 [EC:3.6.4.13]
Length=564
Score = 28.1 bits (61), Expect = 6.7, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query 5 VDPIVVNVGRAGAANLDVIQEVEYV-KQENKLPYLLHCLQKTE--PPALVFCEN 55
+DP+ V +G AAN ++ Q++ + +E KL + +Q+ E PP ++F E+
Sbjct 328 MDPVRVIIGHKEAANTNIEQKLIFCGNEEGKLIAIRQLVQEGEFKPPIIIFLES 381
Lambda K H
0.318 0.139 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2047154580
Database: egene_temp_file_orthology_annotation_similarity_blast_database_866
Posted date: Sep 17, 2011 2:57 PM
Number of letters in database: 82,071,388
Number of sequences in database: 164,496
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40