bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eace_0002_orf3 Length=101 Score E Sequences producing significant alignments: (Bits) Value CE19331 30.0 1.1 Hs9789989 29.3 1.7 CE22484 29.3 1.9 CE23285 29.3 1.9 At4g01080 28.5 3.2 At3g59070 28.1 4.3 > CE19331 Length=487 Score = 30.0 bits (66), Expect = 1.1, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 0/28 (0%) Query 35 VESYRYGILSRRGWVRRIIPSTRSESSL 62 V + YG+L G V+++IP TRS+ S+ Sbjct 111 VPHHFYGVLPENGVVQKVIPETRSQVSI 138 > Hs9789989 Length=897 Score = 29.3 bits (64), Expect = 1.7, Method: Composition-based stats. Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 6/50 (12%) Query 3 SRRGRNALLCSVI---LILSSPMTCCVRRGYHRHRVESYRYGILSR-RGW 48 SRRG+ S++ L +S +C RR RV++Y Y +L R RGW Sbjct 43 SRRGKQGARMSLLGKPLSYTSSQSC--RRNVKYRRVQNYLYNVLERPRGW 90 > CE22484 Length=432 Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust. Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 0/49 (0%) Query 5 RGRNALLCSVILILSSPMTCCVRRGYHRHRVESYRYGILSRRGWVRRII 53 R RN +L +L C + HRH+ R + +R W RRII Sbjct 97 RERNVILWPPFAVLGGMAACLITLFEHRHQAIVTRSWFVMKRKWTRRII 145 > CE23285 Length=331 Score = 29.3 bits (64), Expect = 1.9, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 0/30 (0%) Query 46 RGWVRRIIPSTRSESSLLIPPSPRRCGVGN 75 R + R+++PS R +S++ +P+R GV + Sbjct 301 RNYTRKLLPSCRRFNSVVFSSTPQRVGVAS 330 > At4g01080 Length=442 Score = 28.5 bits (62), Expect = 3.2, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 20/44 (45%), Gaps = 8/44 (18%) Query 61 SLLIP---PSPRR-----CGVGNSSNRRRREFTWCLTHPMRWWN 96 SLL P P P R GV N SN + WCL P+ WN Sbjct 380 SLLRPDGHPGPYRHPNPFAGVKNKSNVQNDCLHWCLPGPIDSWN 423 > At3g59070 Length=466 Score = 28.1 bits (61), Expect = 4.3, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%) Query 1 SFSRRGRNALLCSVILILSSPMTCCVRRGYH-RHRVESYRY 40 S S R +LC + +++ S T +G H R R ESY + Sbjct 2 SLSSRATLVVLCCLFMLIPSFTTAATEQGLHARSRCESYSF 42 Lambda K H 0.329 0.139 0.492 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1184494980 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40