bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eace_0036_orf2
Length=174
Score E
Sequences producing significant alignments: (Bits) Value
7304167 36.6 0.025
CE08170 35.0 0.077
At4g15180 32.7 0.33
7294205 28.9 6.0
At2g28240 28.1 9.0
> 7304167
Length=923
Score = 36.6 bits (83), Expect = 0.025, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 26/40 (65%), Gaps = 0/40 (0%)
Query 99 PKNTQQPKQQTKQQLKQQPKQQSKQQPKQQSKQQPKQQKQ 138
PK + PK + K++LK QPK+ SKQ K +K++ + K+
Sbjct 658 PKTAEAPKDRPKRKLKPQPKKDSKQDFKSDNKKRIFENKE 697
> CE08170
Length=173
Score = 35.0 bits (79), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 20/32 (62%), Positives = 27/32 (84%), Gaps = 1/32 (3%)
Query 106 KQQTKQQL-KQQPKQQSKQQPKQQSKQQPKQQ 136
K+Q+K QL K+QPK+Q K+QPK+Q K+QPK Q
Sbjct 74 KEQSKDQLVKEQPKEQPKEQPKEQPKEQPKDQ 105
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 0/36 (0%)
Query 99 PKNTQQPKQQTKQQLKQQPKQQSKQQPKQQSKQQPK 134
PK Q Q K+Q K+QPK+Q K+QPK+Q K Q K
Sbjct 72 PKKEQSKDQLVKEQPKEQPKEQPKEQPKEQPKDQAK 107
> At4g15180
Length=2351
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query 51 TESNWTTVVRRGKAQAKATEKASARSKISTAAGKRRAPLPANCAVTPKPKNTQQPKQQTK 110
T N T + +++ K SA S+ K+R V +PK QP++Q
Sbjct 37 TTENGHTSIATKVPESQPANKPSASSQ---PVKKKRIVKVIRKVVKRRPK---QPQKQAD 90
Query 111 QQLKQQPKQQSKQQPKQQSKQQPKQQKQ 138
+QLK QP Q Q P + Q +Q K+
Sbjct 91 EQLKDQPPSQVVQLPAESQLQIKEQDKK 118
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 11/75 (14%)
Query 72 ASARSKISTAAGKRRAPLPANCAVTPKPKNTQQPKQQTK------QQLKQQPKQQSKQQP 125
A+ + ++ A K PAN KP + QP ++ + + +K++PKQ KQ
Sbjct 36 ATTENGHTSIATKVPESQPAN-----KPSASSQPVKKKRIVKVIRKVVKRRPKQPQKQAD 90
Query 126 KQQSKQQPKQQKQQP 140
+Q Q P Q Q P
Sbjct 91 EQLKDQPPSQVVQLP 105
> 7294205
Length=1638
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 37/78 (47%), Gaps = 0/78 (0%)
Query 60 RRGKAQAKATEKASARSKISTAAGKRRAPLPANCAVTPKPKNTQQPKQQTKQQLKQQPKQ 119
R+G +A+ATEK + K+ +R+ L AV K+ ++ + K QL + K
Sbjct 485 RQGLREARATEKLEKQQKLEAERKRRQKHLEFLAAVLQHGKDLREFHRNNKAQLARMNKA 544
Query 120 QSKQQPKQQSKQQPKQQK 137
+ +Q+ +Q++
Sbjct 545 VMNHHANAEREQKKEQER 562
> At2g28240
Length=653
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query 96 TPKPKNTQQP-KQQTKQQLKQQPKQQSKQQPKQQSKQQPKQQKQQPKPPPTVPANAPSSE 154
TP+PK QP +Q+ ++ P + K S Q P QP+PPP + + P+S
Sbjct 533 TPQPKPVSQPPAKQSNTEINSTPHPRPSVTSKAISLQSPPCNTPQPRPPPLISNHTPTSY 592
Query 155 Q 155
Q
Sbjct 593 Q 593
Lambda K H
0.308 0.120 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2634976318
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40