bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eace_0633_orf1 Length=88 Score E Sequences producing significant alignments: (Bits) Value YLR397c 31.6 0.34 Hs4505507 28.5 3.3 Hs20545469 28.1 3.8 CE27753 27.7 5.2 Hs14751637 27.3 6.4 > YLR397c Length=780 Score = 31.6 bits (70), Expect = 0.34, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 0/44 (0%) Query 19 PLHSSLLFNIRGLSPPQLTYRSHRPSCSHSTRRQVIANAACAHL 62 PLH LF+ G+SPP+ P + +V+AN + AH+ Sbjct 264 PLHQPTLFSSFGVSPPRGILLHGPPGTGKTMLLRVVANTSNAHV 307 > Hs4505507 Length=802 Score = 28.5 bits (62), Expect = 3.3, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 0/21 (0%) Query 22 SSLLFNIRGLSPPQLTYRSHR 42 SSL F +R LS P +TYR H+ Sbjct 447 SSLKFYLRNLSEPVMTYRLHK 467 > Hs20545469 Length=272 Score = 28.1 bits (61), Expect = 3.8, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 0/44 (0%) Query 4 GGRKLQQLLTKKTNSPLHSSLLFNIRGLSPPQLTYRSHRPSCSH 47 G + LQQL + T H +L+F + L+ L + P+C H Sbjct 15 GPKDLQQLAEECTFQVWHPNLVFQVPALAQATLECENRGPACCH 58 > CE27753 Length=270 Score = 27.7 bits (60), Expect = 5.2, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%) Query 24 LLFNIRGLSPPQLTYRSHRPSCS--HSTRRQVIANAACAHLELC 65 LLF+ LSP ++ Y++H C H + + I N ++ELC Sbjct 33 LLFSTTKLSPIKVIYKNHPEGCQRVHDGQEEFIKNK--NYIELC 74 > Hs14751637 Length=1247 Score = 27.3 bits (59), Expect = 6.4, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 7/46 (15%) Query 9 QQLLTKKTNSPLHSSLLFNIRGLSPPQL---TYRSHRPSCSHSTRR 51 Q+L TKK L S+ + RGLSPPQ Y + P H R Sbjct 904 QKLTTKK----LEGSIAASGRGLSPPQCLPRNYDAQPPGAKHGLAR 945 Lambda K H 0.327 0.134 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1184307974 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40