bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Emax_1793_orf1
Length=135
Score E
Sequences producing significant alignments: (Bits) Value
CE21108 30.0 1.3
SPCC1450.12 29.6 1.8
At5g47780 28.9 2.7
7296462 28.1 4.6
Hs11056038 27.7 6.3
ECU10g1500 27.7 7.1
> CE21108
Length=212
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 17/80 (21%)
Query 1 HELEQSASCRRI--------------VSLTITSVIACMSFAAPLRQRSDSTSDPQHDQQH 46
+EL S SC RI +S+ +T ++ M + +D ++ D +
Sbjct 135 YELVASFSCLRIMPWIRRVKDFNISLISVIVTIIVTLMCYLFFSSNTNDEDNNTLDDDE- 193
Query 47 RRRVQLPHEQQHHQRQKQQK 66
+ LPH+ H QR+K Q+
Sbjct 194 --KPDLPHQGVHRQRKKSQR 211
> SPCC1450.12
Length=821
Score = 29.6 bits (65), Expect = 1.8, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query 25 SFAAPLRQRSDSTSDPQHDQQH-----RRRVQL 52
S +PL RS T+DPQ D QH R R++L
Sbjct 248 STLSPLPSRSSDTNDPQSDSQHVLRQERMRIEL 280
> At5g47780
Length=615
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query 74 PVEETSSTYSLNCSQSNFPNTNSRESSKLLRHYS 107
P+ T+ Y+LN S+ FPN E ++L HY+
Sbjct 279 PLRLTTDYYALNSSEQQFPNQEKLEDTQLY-HYA 311
> 7296462
Length=1345
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Query 32 QRSDSTSDP--QHDQQHRRRVQLPHEQQHHQRQKQQKQAQF---------LMNPVEETSS 80
+ SDS + Q D + R + ++Q +R+ QK A F L +E +
Sbjct 594 KESDSIKNAITQTDNEFERLQAVAKDEQEKRRKLDQKIAHFNSLKTEIETLQKKLEALRN 653
Query 81 TYSLNCSQSNFPNTNSRESSKLL 103
+ SL+C ++NF N+ ++ K+
Sbjct 654 SDSLDCLETNFCNSLHKDLKKIF 676
> Hs11056038
Length=365
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query 32 QRSDSTSDPQHDQQHRRRVQLPHEQQHHQRQKQQKQAQFLMNPVEETSSTYSLNCSQSNF 91
+RSDS S D Q R L +R+K++ + F + +EE + S++++
Sbjct 133 KRSDSVSTSDEDSQSEDRNDLKASPTLGKRKKRRHRTVFTAHQLEELEKAF----SEAHY 188
Query 92 PNTNSRE 98
P+ +RE
Sbjct 189 PDVYARE 195
> ECU10g1500
Length=456
Score = 27.7 bits (60), Expect = 7.1, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 45/94 (47%), Gaps = 2/94 (2%)
Query 40 PQHDQQHRRRV-QLPHEQQHHQRQKQQKQAQFLMNPVEETSSTYSLNCSQSNFPNTNSRE 98
P H+ R+R +LP +++ + ++ + E S TY+ N + + + +
Sbjct 123 PPHEFYKRKRSHELPQNHGGSSSCGNKEKCEPIILEISEISETYNGNDTDEHQDSGKGSQ 182
Query 99 SSKLLRHYSS-RACRLPFFFAALGGGLKGGELAQ 131
SS +L SS ++ +P F +G L G E+++
Sbjct 183 SSAVLEKTSSCQSNEMPSSFINVGNDLTGQEVSK 216
Lambda K H
0.318 0.127 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1388795348
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40