bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_0010_orf3 Length=168 Score E Sequences producing significant alignments: (Bits) Value Hs19924165 31.2 0.89 At5g20800 28.5 6.2 At1g07270 28.5 7.0 > Hs19924165 Length=2347 Score = 31.2 bits (69), Expect = 0.89, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 46/128 (35%), Gaps = 31/128 (24%) Query 50 PQLLH---LRCLYTSRAAAAGVSTHLNICCGCCCCSWG----VCTPQCLQIPSIQACGLW 102 P+L++ L CL+ S T LN C C + G + TP L P IQ C W Sbjct 9 PKLVNFATLGCLWISVVQC----TVLNSCLKSCVTNLGQQLDLGTPHNLSEPCIQGCHFW 64 Query 103 ---PRRLLQLRCLHTCSAAAAAVSTHLNTCCCCCCCCCSTSALQCLQILSMRSLPPEAAA 159 ++ L+C +C C S ++L LP A Sbjct 65 NSVDQKNCALKCRESCEVG-----------------CSSAEGAYEEEVLENADLPTAPFA 107 Query 160 PPLGAQSM 167 +G+ +M Sbjct 108 SSIGSHNM 115 > At5g20800 Length=359 Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust. Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 0/52 (0%) Query 4 HLISCCSWGVCTPHQLLQLGCVSTSAAAAGVSVHLLSCCSWGVYTPPQLLHL 55 H + + + ++ + T+ + G + LL SW V PP+L H Sbjct 88 HFTKSGKYTFKSGYHTSRIEYIDTNLSFIGPEITLLKAYSWKVQCPPKLRHF 139 > At1g07270 Length=507 Score = 28.5 bits (62), Expect = 7.0, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%) Query 107 LQLRCLHTCSAAAAAVSTHLNTCCCCCCCCCSTSALQCLQILSMRSLPPEAAAP 160 Q + L C+ AA S + C C SAL+ L+I + S PE+ P Sbjct 328 FQPKALELCARKVAAASGDMRKALCVC-----RSALEILEIETRGSTGPESQGP 376 Lambda K H 0.330 0.134 0.506 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2418402922 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40