bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_0010_orf3
Length=168
Score E
Sequences producing significant alignments: (Bits) Value
Hs19924165 31.2 0.89
At5g20800 28.5 6.2
At1g07270 28.5 7.0
> Hs19924165
Length=2347
Score = 31.2 bits (69), Expect = 0.89, Method: Composition-based stats.
Identities = 31/128 (24%), Positives = 46/128 (35%), Gaps = 31/128 (24%)
Query 50 PQLLH---LRCLYTSRAAAAGVSTHLNICCGCCCCSWG----VCTPQCLQIPSIQACGLW 102
P+L++ L CL+ S T LN C C + G + TP L P IQ C W
Sbjct 9 PKLVNFATLGCLWISVVQC----TVLNSCLKSCVTNLGQQLDLGTPHNLSEPCIQGCHFW 64
Query 103 ---PRRLLQLRCLHTCSAAAAAVSTHLNTCCCCCCCCCSTSALQCLQILSMRSLPPEAAA 159
++ L+C +C C S ++L LP A
Sbjct 65 NSVDQKNCALKCRESCEVG-----------------CSSAEGAYEEEVLENADLPTAPFA 107
Query 160 PPLGAQSM 167
+G+ +M
Sbjct 108 SSIGSHNM 115
> At5g20800
Length=359
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 0/52 (0%)
Query 4 HLISCCSWGVCTPHQLLQLGCVSTSAAAAGVSVHLLSCCSWGVYTPPQLLHL 55
H + + + ++ + T+ + G + LL SW V PP+L H
Sbjct 88 HFTKSGKYTFKSGYHTSRIEYIDTNLSFIGPEITLLKAYSWKVQCPPKLRHF 139
> At1g07270
Length=507
Score = 28.5 bits (62), Expect = 7.0, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query 107 LQLRCLHTCSAAAAAVSTHLNTCCCCCCCCCSTSALQCLQILSMRSLPPEAAAP 160
Q + L C+ AA S + C C SAL+ L+I + S PE+ P
Sbjct 328 FQPKALELCARKVAAASGDMRKALCVC-----RSALEILEIETRGSTGPESQGP 376
Lambda K H
0.330 0.134 0.506
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 2418402922
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40