bitscore colors: <40, 40-50 , 50-80, 80-200, >200

BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_0010_orf4
Length=124
Score E
Sequences producing significant alignments: (Bits) Value
7290479 30.4 0.86
Hs22059857 29.6 1.3
SPAC1783.02c 28.5 2.9
CE22336 28.1 4.5
> 7290479
Length=485
Score = 30.4 bits (67), Expect = 0.86, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 11/83 (13%)
Query 41 SKHAVFGPGGCCSCGVYTPAQLLLLRCLHTSTPAAAAA----AAAAAPLL----FSASRF 92
++ AVF P C C + +P L LR + P + + + PLL + F
Sbjct 305 AQAAVFKPSLMCICSLASPVVLQRLRPIVVRPPLPGVSQHLMSDISQPLLPNSPLMSHEF 364
Query 93 LACGLCPPKLQRLRWGPS-RWRR 114
LA G P +QR PS RWR+
Sbjct 365 LAHGFHP--MQRSGHKPSGRWRK 385
> Hs22059857
Length=334
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 3/26 (11%)
Query 96 GLCPPKLQ---RLRWGPSRWRRLRRR 118
GL PPK RLR+ P RW RL R
Sbjct 264 GLLPPKRSKKCRLRYKPHRWNRLENR 289
> SPAC1783.02c
Length=328
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 0/56 (0%)
Query 48 PGGCCSCGVYTPAQLLLLRCLHTSTPAAAAAAAAAAPLLFSASRFLACGLCPPKLQ 103
PG + +P +L+L CL+ T A + + ++ + + F +C P KL+
Sbjct 135 PGDILAVNHSSPLDVLVLSCLYNCTFAVCDSKTSNVSIISAQAYFWSCFFSPSKLK 190
> CE22336
Length=375
Score = 28.1 bits (61), Expect = 4.5, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query 15 HTSTSAAAAAAAAGVSVHLSASRSQASKHAVFGPGGCCSCGV 56
T T+A A A S +A+ S AS+ A G CCSCGV
Sbjct 123 QTPTAAPVAQAQVPAS-SFAATFSHASR-APASSGSCCSCGV 162
Lambda K H
0.324 0.132 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1187579072
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40