bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_0010_orf4 Length=124 Score E Sequences producing significant alignments: (Bits) Value 7290479 30.4 0.86 Hs22059857 29.6 1.3 SPAC1783.02c 28.5 2.9 CE22336 28.1 4.5 > 7290479 Length=485 Score = 30.4 bits (67), Expect = 0.86, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 11/83 (13%) Query 41 SKHAVFGPGGCCSCGVYTPAQLLLLRCLHTSTPAAAAA----AAAAAPLL----FSASRF 92 ++ AVF P C C + +P L LR + P + + + PLL + F Sbjct 305 AQAAVFKPSLMCICSLASPVVLQRLRPIVVRPPLPGVSQHLMSDISQPLLPNSPLMSHEF 364 Query 93 LACGLCPPKLQRLRWGPS-RWRR 114 LA G P +QR PS RWR+ Sbjct 365 LAHGFHP--MQRSGHKPSGRWRK 385 > Hs22059857 Length=334 Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust. Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 3/26 (11%) Query 96 GLCPPKLQ---RLRWGPSRWRRLRRR 118 GL PPK RLR+ P RW RL R Sbjct 264 GLLPPKRSKKCRLRYKPHRWNRLENR 289 > SPAC1783.02c Length=328 Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust. Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 0/56 (0%) Query 48 PGGCCSCGVYTPAQLLLLRCLHTSTPAAAAAAAAAAPLLFSASRFLACGLCPPKLQ 103 PG + +P +L+L CL+ T A + + ++ + + F +C P KL+ Sbjct 135 PGDILAVNHSSPLDVLVLSCLYNCTFAVCDSKTSNVSIISAQAYFWSCFFSPSKLK 190 > CE22336 Length=375 Score = 28.1 bits (61), Expect = 4.5, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%) Query 15 HTSTSAAAAAAAAGVSVHLSASRSQASKHAVFGPGGCCSCGV 56 T T+A A A S +A+ S AS+ A G CCSCGV Sbjct 123 QTPTAAPVAQAQVPAS-SFAATFSHASR-APASSGSCCSCGV 162 Lambda K H 0.324 0.132 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1187579072 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40