bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: kyva 112,920 sequences; 47,500,486 total letters Query= Eten_4229_orf3 Length=122 Score E Sequences producing significant alignments: (Bits) Value Hs22062241 29.6 1.5 7292051 29.6 1.5 At1g01080 28.1 4.5 At2g29580 27.3 7.8 > Hs22062241 Length=992 Score = 29.6 bits (65), Expect = 1.5, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 12/56 (21%) Query 7 WGVFFSPFSQPEKKNPPKFPRPRGFGKNHFWFFG--------GVNGARKLFWGKTG 54 W P ++PE P P PR F + WF+ G+ G + + GK G Sbjct 558 WQTLRIPSAKPE----PTTPDPRSFSLSSLWFWSLIEHLPPYGITGVKYILEGKEG 609 > 7292051 Length=188 Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust. Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 2/56 (3%) Query 3 FSLFWGVFFSPFS-QPEKKNPPKFPRPRGFGKNHFWFFG-GVNGARKLFWGKTGEP 56 + + G+ + S Q E K R G G HFW G + FW TG P Sbjct 78 YCRYHGMHLASISSQEENDRLEKHIRDFGLGHEHFWISGTDLADEGNFFWMATGRP 133 > At1g01080 Length=293 Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust. Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%) Query 21 NPPKFPRPRGFGKNHFWFFGGVNGARKLFWGKTGEPKV 58 N P F +P G +NHF FG + R L KTG +V Sbjct 218 NLPWFTQPDGL-RNHFSKFGTIVSTRVLHDRKTGRNRV 254 > At2g29580 Length=483 Score = 27.3 bits (59), Expect = 7.8, Method: Composition-based stats. Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query 42 VNGAR-KLFWGKTGEPKVKKKVSNPLGKGGRPLLFNQKKFLKKTRQPP 88 VNG R KL WG+ PK + SN G L + ++ QPP Sbjct 289 VNGQRLKLTWGRPQVPKPDQDGSNQQGSVAHSGLLPRAVISQQQNQPP 336 Lambda K H 0.324 0.147 0.512 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1194805952 Database: kyva Posted date: Jul 3, 2009 9:03 AM Number of letters in database: 47,500,486 Number of sequences in database: 112,920 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40