bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.24+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: kyva
112,920 sequences; 47,500,486 total letters
Query= Eten_5570_orf2
Length=128
Score E
Sequences producing significant alignments: (Bits) Value
CE25556 28.9 2.7
CE03331 28.1 4.5
CE20436 28.1 4.5
SPAC824.05 27.7 5.3
7298411 27.7 5.9
SPCC584.04 27.3 7.7
Hs17441922 27.3 7.7
> CE25556
Length=945
Score = 28.9 bits (63), Expect = 2.7, Method: Composition-based stats.
Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 4/91 (4%)
Query 16 SPTATSPGEPMSQSTTTRSSVTQQEHEADPAPSQQQHPDGRENAEATDLWCKGQQHAQMA 75
+P + SP P +++ + + + PA S+ DG N + D K + +
Sbjct 202 TPASASPTPPEAETPVLSAEGSPESSNKRPASSEIIEIDGEGNPDENDFAKKRRMKKEAR 261
Query 76 LQHLQSICSKARGPYLYLYCSAARDRFHPLP 106
L +Q K + L+ Y R F +P
Sbjct 262 LMEVQKKRMKKQSDLLWEY----RQIFERMP 288
> CE03331
Length=447
Score = 28.1 bits (61), Expect = 4.5, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 0/42 (0%)
Query 4 SSSGNTAAAFTMSPTATSPGEPMSQSTTTRSSVTQQEHEADP 45
S+ A PTATSP P + R VT+++ E DP
Sbjct 63 STPSPAQANLLKDPTATSPNVPGRERKAIRRKVTKEKVEKDP 104
> CE20436
Length=727
Score = 28.1 bits (61), Expect = 4.5, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 43/106 (40%), Gaps = 7/106 (6%)
Query 1 SINSSSGNTAAAFTMSPTATSPGEPMSQSTTTRSSVTQQEHEADPAPSQQQHPDGRENAE 60
++ + G+T A +P + SP P +++ + + + PA ++ DG N +
Sbjct 190 ALAAKGGSTEPA---TPASASPTPPEAETPVLSAEGSPESSNKRPASAEIIEIDGEGNPD 246
Query 61 ATDLWCKGQQHAQMALQHLQSICSKARGPYLYLYCSAARDRFHPLP 106
D K + + L +Q K + L+ Y R F +P
Sbjct 247 ENDFAKKRRMKKEARLMEVQKKRMKKQSDLLWEY----RQIFERMP 288
> SPAC824.05
Length=835
Score = 27.7 bits (60), Expect = 5.3, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query 69 QQHAQMALQHLQSICSKARGPYLYLYCSAARDRFHPLPTSRIRQWHLLDLQLP 121
Q H+ +LQH+ I YL LY S + R S+ LLDL+LP
Sbjct 216 QLHSISSLQHVSHISISPNARYLALYESVGKVRVISSDFSK----ELLDLRLP 264
> 7298411
Length=3097
Score = 27.7 bits (60), Expect = 5.9, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query 8 NTAAAFTMSPTATSPGEPMSQSTTTRSSVTQQEHEADPAPSQQQH-PDGRENA 59
N A + TA GEP T T+ +++ +P SQQ + P+ ENA
Sbjct 819 NNNAYYEFIVTAKDKGEPPKSGVATVRVYTKNKNDEEPKFSQQVYTPNVDENA 871
> SPCC584.04
Length=662
Score = 27.3 bits (59), Expect = 7.7, Method: Composition-based stats.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 0/56 (0%)
Query 4 SSSGNTAAAFTMSPTATSPGEPMSQSTTTRSSVTQQEHEADPAPSQQQHPDGRENA 59
S GNT+A + P + S G + +TT ++ Q PAP +E A
Sbjct 120 SLGGNTSAPKSTKPISISLGGTKAPTTTKPAAPAAQSKTETPAPKVTSESTKKETA 175
> Hs17441922
Length=450
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query 7 GNTAAAFTMSPTATSPGEPMSQSTT-----TRSSVTQQEHEADPAPSQQQHPDG 55
G + + F + +A P P+ Q T R S Q +H D AP + QHP G
Sbjct 348 GYSPSWFQVDRSALGPSVPVEQQETQAQHPPRRSTPQMQHPPDTAPPKMQHPPG 401
Lambda K H
0.314 0.124 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1213511838
Database: kyva
Posted date: Jul 3, 2009 9:03 AM
Number of letters in database: 47,500,486
Number of sequences in database: 112,920
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40