TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_I Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15080552 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:784150 original size:2 final size:2 Alignment explanation
Indices: 784145--784166 Score: 44 Period size: 2 Copynumber: 11.0 Consensus size: 2 784135 GACAGGGGGG 784145 CT CT CT CT CT CT CT CT CT CT CT 1 CT CT CT CT CT CT CT CT CT CT CT 784167 TCGAGCGGCA Statistics Matches: 20, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 20 1.00 ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50 Consensus pattern (2 bp): CT Left flanking sequence: Indices 783645 -- 784144 CCGGCCTACGTTCCTACCAACGTGCCTACCTGCCTGCTCACTAGCCTAAGTGTCTGCCTACATAA ATTGTCCGTTAGCACATCAAACTTTTCATATATACAAAAAATTGCATAAAAAGAAGATAATCATT AATAACAAGTGGGTAACTCAAAAAGGAAATTGGTTTATCTCCCGGCTCCGAGAGCACCAGCACTT TGCTTTTCCGTCACTACAACCTCTAATTTTGTTTTGTTCGAAGGACTTTTTCCGATACATACTAA TTTTTTCGGATCCGGTTGGCTCTGGATTTCAAGTTTTATAATAACTTGGGCTCCCAGTGACGTCA CCAAAGGTGCAATTAGCCTTTAGTAACTAAACAGCTTGCTCCTAGTTTACTGCTCCGTCTTCTCA AATGAAACAGAGAGAGAGAGACCCCTCATCGAAAATTCAATTAAACGCTAAAACGTAGGTAGGAA AGAGAGAGAGAGGGAGACTCCTCCCAAAAAAAAAAGACAGGGGGG Right flanking sequence: Indices 784167 -- 784666 TCGAGCGGCAAATCGGCTTCCGAATTCATTCAAAAACAAATTATGTGCTCAACCACCACCACTAC CACCGGCTCCAGGCGGGTAATTACACTTGAAAACCAAGTACTAGGTTTCGTGGCCGGGCAAACTT TTTCTTATTAGACCCCGGTGGAATTTTGTAGGTCTATTTAAAATTGCAATTGCGCTATTTTGTAC TGTTTTTTTTTTGACAAACTTTGAAGCTTGATGTCAAGCTGGAAAAGCGCTCTAATGACAATTTT GACTGCAAACTCGCTCTGTTGATAAATGGTCCGTGTACTCCACGGGGGCAATTAAACTGGATTTT TTTCGATTAAATAATATCTTGATTTTTTGCAGTTTTGGCTTAGGCTTAGGCGTAGGCTTAGGTTT AGTCTCGGGCTTAGGCTTATGGTCAGGGTCAGGCTTAGGCATAGGCTTGGGCTTAGGCTTCGGCT TAGACTTAGGCTTAGGCTTAGGCTTATGCTTAGGCTTAGGCTTAG Found at i:785249 original size:2 final size:2 Alignment explanation
Indices: 785244--785256 Score: 26 Period size: 2 Copynumber: 6.5 Consensus size: 2 785234 GAAAGTTTTT 785244 TG TG TG TG TG TG T 1 TG TG TG TG TG TG T 785257 TTTTTGTGGG Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 11 1.00 ACGTcount: A:0.00, C:0.00, G:0.46, T:0.54 Consensus pattern (2 bp): TG Left flanking sequence: Indices 784744 -- 785243 CTCAGGCTTAGGCTTAGGCTTAGGCTCATGCTCAGGCTTAGGCTCAGACTTAGGCTTAGACTTAG GCTTAGGTTTTGGCTTAGTCTTAGGTTTGGACTTAGTCTTAGGCTTAGTCTCGGACTTAGGCTTA GGCTTAGGCTTAAGTTCAGGCTTAGGTTTAGGCTTAGTCTGAATATTTGGCTTAGCCTTGGGCTT AGGTTTAGGGCTTAGGCTTAGGATTAGGCTTTGGCTTGCCGGCCACCTGGGATATTGTGGTTTGA CAGGGGTAGGCTATCCAAATTTTAAAAAAATCGGCTACAAAATTAATATTTAGATGGGCCTATAA ACCATTTCTCTAGGCCATCCTGCAAAATTTCCAAGACAAAAAATTTCAGCCGTGAATAAAGTTTC CGTTTTCCTAGGCCACCTCCAAATTTTCCACGTCATATGTAAGGTATCGGAGGGTACTGTAGAAA ATTATCAAAAATCAGCAAAGAATAATAAGCATTAAGAAAGTTTTT Right flanking sequence: Indices 785257 -- 785756 TTTTTGTGGGAGAAAACATTTCCCCTCTCCTTTTTTCCTGCCTGCTCATTTGGATACCACCGCTA ACCCAACTTGACTTTGATTACCCATTTCCGTCCCCCTTCTTCGTCTTCTTCTACTCCGGGATAGA GAGAGAGCTCTATATAATTACTTTCGTCTTCTTGATCCGTTACCGCCCATTGGCAATTGGTTTGA GCTGCCGCCGGAGAATATATACATGCATGTCTAATTTTTTACTGGAAAATCTAGGAATTTTTACG TTGAAAATTTGGTTAAAAGCGTACAGATCGGCCCATGCTGGTGATTGTACGAAATTTTAATTTCA AAGTATCTGCAGAGGAAGCTAGGCCACAAGCCCCTACGTGGCCGTCAAAATTGAAAACTAGGCCA CCGATTTTTTCTCGGACTTTTTATCTACTTTTGCTATTAGGCCCTGTCTTCTTTTTTGCAACGTT TTTCTACTAGGTCACCAAATTTTTCCTAGGCCAAGCTGCCTAAAA Found at i:786823 original size:2 final size:2 Alignment explanation
Indices: 786818--786832 Score: 30 Period size: 2 Copynumber: 7.5 Consensus size: 2 786808 GAAAAAAAAA 786818 GT GT GT GT GT GT GT G 1 GT GT GT GT GT GT GT G 786833 GACATAGGAA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 13 1.00 ACGTcount: A:0.00, C:0.00, G:0.53, T:0.47 Consensus pattern (2 bp): GT Left flanking sequence: Indices 786318 -- 786817 ATCAATTTTTTTCTCGGCCAGGTTGCCAATCTACGGGAAACCGTCATGTTTCTTGCTCAAAATTA CACCCTATTCTCGAAAAATTTTTTTTACGTTGAGTATGCTCTCCTGCCTAGGTGGCCGCCCAATT AGAAAACTCGGCCACCCATTTTTTCTAGGTCATGTCGAAAATAGGCGATGTAATGGGGTAGTTCA AGGAATTTTGCGTAATGAATAACCCCAAAAATGTTTTCAATATATGGCCGCCAAAAAAGAGAAAA CTCGGCCACCAATTTTTTCTCGGCCAGGTAGGCTACCAATCTACGGGATACCGTGCGCTCCATCC TATCTCAGGCTCAAAATTACGCCTTTTTTCTCGAAAAATTTTTGCATACTCTCCTCCCGTGCGGT TCTTAATTAATGAAAGACGTTTTTTTTTCTCCTTGTCTAACGAGTGTATATGCAGAATTCAGGAT ATGCGTCTTCTTTTCCGAGTTCTTGTCTTCAAAGCGAAAAAAAAA Right flanking sequence: Indices 786833 -- 787332 GACATAGGAAGACTCGTCTTCGAAGAAGACGCTCATTAGCTCATTTCATCCACTCGCTAATTTCA TTAATTTTGTGCTTCTTCGCCTGCCTTCCGACGTGTTTACCCACACCACCACCACCACCACTCAG TACCTCCTCACTCACCGTGGAGAAAGATGTTCTGGATTTTTTTAAGCTTTTGAGTTTTGTGTCCT ACCTCACTTTTTAGGCTCCACCCACTTCTTGGCCTGTTATTTCGGTTTATTAGAATTTGTGTGGT GTACTACAAATTTCGATCCGAAAAATGGCAAAAAAAATTCAGCTGACTGAATTTTTTTGAACTTT CAAAGGTTCAGTTTTTGCAACCTAAACCTCTCTTAACTTTAACTTTTCAAACCCCGCCCATATCT TGGCTTTTCCAGAAATCCGAGTAATTTTTTGGGAAATTTATGGTACAACTAGCTATCAGAACAAT TTTTACGGAAGTTTTTTTAATTTTATTTTAATTTAAGTCTACTGA Found at i:786949 original size:3 final size:3 Alignment explanation
Indices: 786941--786958 Score: 36 Period size: 3 Copynumber: 6.0 Consensus size: 3 786931 TGTTTACCCA 786941 CAC CAC CAC CAC CAC CAC 1 CAC CAC CAC CAC CAC CAC 786959 TCAGTACCTC Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 15 1.00 ACGTcount: A:0.33, C:0.67, G:0.00, T:0.00 Consensus pattern (3 bp): CAC Left flanking sequence: Indices 786441 -- 786940 CCCAATTAGAAAACTCGGCCACCCATTTTTTCTAGGTCATGTCGAAAATAGGCGATGTAATGGGG TAGTTCAAGGAATTTTGCGTAATGAATAACCCCAAAAATGTTTTCAATATATGGCCGCCAAAAAA GAGAAAACTCGGCCACCAATTTTTTCTCGGCCAGGTAGGCTACCAATCTACGGGATACCGTGCGC TCCATCCTATCTCAGGCTCAAAATTACGCCTTTTTTCTCGAAAAATTTTTGCATACTCTCCTCCC GTGCGGTTCTTAATTAATGAAAGACGTTTTTTTTTCTCCTTGTCTAACGAGTGTATATGCAGAAT TCAGGATATGCGTCTTCTTTTCCGAGTTCTTGTCTTCAAAGCGAAAAAAAAAGTGTGTGTGTGTG TGGACATAGGAAGACTCGTCTTCGAAGAAGACGCTCATTAGCTCATTTCATCCACTCGCTAATTT CATTAATTTTGTGCTTCTTCGCCTGCCTTCCGACGTGTTTACCCA Right flanking sequence: Indices 786959 -- 787458 TCAGTACCTCCTCACTCACCGTGGAGAAAGATGTTCTGGATTTTTTTAAGCTTTTGAGTTTTGTG TCCTACCTCACTTTTTAGGCTCCACCCACTTCTTGGCCTGTTATTTCGGTTTATTAGAATTTGTG TGGTGTACTACAAATTTCGATCCGAAAAATGGCAAAAAAAATTCAGCTGACTGAATTTTTTTGAA CTTTCAAAGGTTCAGTTTTTGCAACCTAAACCTCTCTTAACTTTAACTTTTCAAACCCCGCCCAT ATCTTGGCTTTTCCAGAAATCCGAGTAATTTTTTGGGAAATTTATGGTACAACTAGCTATCAGAA CAATTTTTACGGAAGTTTTTTTAATTTTATTTTAATTTAAGTCTACTGAAATTGACCTAAAATAT ATTTTGAAAAATGCTTTGATCCCGAAATTGGCCAAAAAACGTTGATCGAATTTTTTTGAACTTTC AAAGGTTCCGTTTTTGCAACCTTTAAGCCCCGCCCATTTCTTGGC Found at i:787199 original size:6 final size:6 Alignment explanation
Indices: 787190--787203 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 787180 TAAACCTCTC 787190 TTAACT TTAACT TT 1 TTAACT TTAACT TT 787204 TCAAACCCCG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57 Consensus pattern (6 bp): TTAACT Left flanking sequence: Indices 786690 -- 787189 ACTCTCCTCCCGTGCGGTTCTTAATTAATGAAAGACGTTTTTTTTTCTCCTTGTCTAACGAGTGT ATATGCAGAATTCAGGATATGCGTCTTCTTTTCCGAGTTCTTGTCTTCAAAGCGAAAAAAAAAGT GTGTGTGTGTGTGGACATAGGAAGACTCGTCTTCGAAGAAGACGCTCATTAGCTCATTTCATCCA CTCGCTAATTTCATTAATTTTGTGCTTCTTCGCCTGCCTTCCGACGTGTTTACCCACACCACCAC CACCACCACTCAGTACCTCCTCACTCACCGTGGAGAAAGATGTTCTGGATTTTTTTAAGCTTTTG AGTTTTGTGTCCTACCTCACTTTTTAGGCTCCACCCACTTCTTGGCCTGTTATTTCGGTTTATTA GAATTTGTGTGGTGTACTACAAATTTCGATCCGAAAAATGGCAAAAAAAATTCAGCTGACTGAAT TTTTTTGAACTTTCAAAGGTTCAGTTTTTGCAACCTAAACCTCTC Right flanking sequence: Indices 787204 -- 787703 TCAAACCCCGCCCATATCTTGGCTTTTCCAGAAATCCGAGTAATTTTTTGGGAAATTTATGGTAC AACTAGCTATCAGAACAATTTTTACGGAAGTTTTTTTAATTTTATTTTAATTTAAGTCTACTGAA ATTGACCTAAAATATATTTTGAAAAATGCTTTGATCCCGAAATTGGCCAAAAAACGTTGATCGAA TTTTTTTGAACTTTCAAAGGTTCCGTTTTTGCAACCTTTAAGCCCCGCCCATTTCTTGGCTGTAT TGTATTCAAAGTTAAAAGTTGTTCATGTTGTACTAAAATATGCAAGTATCATAAAAAATTAACTT TTTAAGCTCCACCCATTTCTTGGTTTTTCTGGAAATCCGAGTAATTTTCTGGGACTGTTATGGTA CAATTAGGTATCAGAAAAAAAATCAAGGAAATTTTTTACTTGGATTTATGTCCACTGAAATTGAC CTGAAAATGTTTTGAGATTTTAAAAAACTTAAATATTTTGATAAA Found at i:792389 original size:6 final size:6 Alignment explanation
Indices: 792378--792398 Score: 42 Period size: 6 Copynumber: 3.5 Consensus size: 6 792368 TTCTTGATTT 792378 TTTCAA TTTCAA TTTCAA TTT 1 TTTCAA TTTCAA TTTCAA TTT 792399 TTTAGATTTT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 15 1.00 ACGTcount: A:0.29, C:0.14, G:0.00, T:0.57 Consensus pattern (6 bp): TTTCAA Left flanking sequence: Indices 791878 -- 792377 ATTTGAATAACTTTCCTACCAGGCTGCCCCAATACAGTTTGATCTACAAAAAATGCAGGAATTTT TTGCCCAAAAATATGTGACGTCGGCACGTTCTTAACCATACAAAATCAGTTGAGAACTCTGCGTC TCTTCTCCCGCATTTTTTGTAGATCACCGTAATACAATGCAAAAATGAGAGAAAAAAATTTGAAA AAAAACCTATCCAAAAATTTGGCATTTTCAGATTTTTTTTTTCGAGCAGACCTAAAAATGTTTCG ATAAATTCTAGATTTTTTGAAAAACTGTCTGAATTTTTTTTTTTGAGAACAATGATTATATTTTA AAGATCAGTGTTGACTTGAATCATGTAGCGTAAAAAAGGTTAAAAAAAAACCAAGATATGGGCGG AGCCTAAAATTACAGAAATTGGACCGTAAATTTTTCAAAAAATTTTTTTTTTTTCAAAAACCGAA ATTTTATTTTAATTTCAAAATTTCCGCTTCGGGGTTTCTTGATTT Right flanking sequence: Indices 792399 -- 792898 TTTAGATTTTTTCCCGTAAAAAACCCAAAATAAATTTACTGAAGCTTCACTATTGGATTAAAAAT TTATAAGGTTCTTTGCGGGAAAATTAGTAAAAAATCGAAAATATATTTTAAAAGAAAAATCAAAA TTAATACAAAAAATTAAGGCTTCCATGTAGGTTCGCGTGGTGCCAGGCTATCCCATTATTTTTTC TTTTTTTTTTTTTTTCCCCAGGAAAGTGTGACGTCAGCACGTTCTTAACCATGCTAAATCAGTTG AAAAGTCTGCCTCTCTTCTCCCGCATTTTTCGAAGATCATACCAAAATGGGGCACTTTGACGCCA CGTGTAGACTGTAGGCCATAAACCGCCTGCCTGCCTGATTTTCAGGCTACCTACGCCTGCCTGTC GCCCCAATCCACGCCTTATGCTAAAACACATTCATTTCTTAATTTGATTTTCACCAAAGTGATAA AAAAGATAAATTAAAAATTAGTACATTCTCGTCAAAATGCAAAAA Found at i:792757 original size:4 final size:4 Alignment explanation
Indices: 792748--792760 Score: 26 Period size: 4 Copynumber: 3.2 Consensus size: 4 792738 GCCATAAACC 792748 GCCT GCCT GCCT G 1 GCCT GCCT GCCT G 792761 ATTTTCAGGC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 9 1.00 ACGTcount: A:0.00, C:0.46, G:0.31, T:0.23 Consensus pattern (4 bp): GCCT Left flanking sequence: Indices 792248 -- 792747 AAAAACCAAGATATGGGCGGAGCCTAAAATTACAGAAATTGGACCGTAAATTTTTCAAAAAATTT TTTTTTTTTCAAAAACCGAAATTTTATTTTAATTTCAAAATTTCCGCTTCGGGGTTTCTTGATTT TTTCAATTTCAATTTCAATTTTTTAGATTTTTTCCCGTAAAAAACCCAAAATAAATTTACTGAAG CTTCACTATTGGATTAAAAATTTATAAGGTTCTTTGCGGGAAAATTAGTAAAAAATCGAAAATAT ATTTTAAAAGAAAAATCAAAATTAATACAAAAAATTAAGGCTTCCATGTAGGTTCGCGTGGTGCC AGGCTATCCCATTATTTTTTCTTTTTTTTTTTTTTTCCCCAGGAAAGTGTGACGTCAGCACGTTC TTAACCATGCTAAATCAGTTGAAAAGTCTGCCTCTCTTCTCCCGCATTTTTCGAAGATCATACCA AAATGGGGCACTTTGACGCCACGTGTAGACTGTAGGCCATAAACC Right flanking sequence: Indices 792761 -- 793260 ATTTTCAGGCTACCTACGCCTGCCTGTCGCCCCAATCCACGCCTTATGCTAAAACACATTCATTT CTTAATTTGATTTTCACCAAAGTGATAAAAAAGATAAATTAAAAATTAGTACATTCTCGTCAAAA TGCAAAAAGAGTCGTAAGGCAGGCAGGTTTCAGGCAGGCCCTGGCTCACGCCTGCCTACGATGCC GGTTACTAAATTTCCAAAATACCTTATTTACTCTACAAATCCTCTACCCCGACATTACATCTCAA AACTCATCCTATTAATTTCTGCCTTAGGCGATAGCACTACTAATTGATAGGAAAAGACGACTTGT GTGTGTGTGTGTTGAATTATTATACTAATTTGATTTTAGGCAGCCTCTTTCGTCAAAAAAAAATA ACTTGTGTCACCACACCACACCTCCCACGTTTTCGGTGAGTGAAGCTTCTGCTCGCTGTTAAGCA GATATTCATAGGGAAATCATCCGTAAATCCATTCAAGTCCTCTTT Found at i:793090 original size:2 final size:2 Alignment explanation
Indices: 793083--793097 Score: 30 Period size: 2 Copynumber: 7.5 Consensus size: 2 793073 AAAGACGACT 793083 TG TG TG TG TG TG TG T 1 TG TG TG TG TG TG TG T 793098 TGAATTATTA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 13 1.00 ACGTcount: A:0.00, C:0.00, G:0.47, T:0.53 Consensus pattern (2 bp): TG Left flanking sequence: Indices 792583 -- 793082 ATTATTTTTTCTTTTTTTTTTTTTTTCCCCAGGAAAGTGTGACGTCAGCACGTTCTTAACCATGC TAAATCAGTTGAAAAGTCTGCCTCTCTTCTCCCGCATTTTTCGAAGATCATACCAAAATGGGGCA CTTTGACGCCACGTGTAGACTGTAGGCCATAAACCGCCTGCCTGCCTGATTTTCAGGCTACCTAC GCCTGCCTGTCGCCCCAATCCACGCCTTATGCTAAAACACATTCATTTCTTAATTTGATTTTCAC CAAAGTGATAAAAAAGATAAATTAAAAATTAGTACATTCTCGTCAAAATGCAAAAAGAGTCGTAA GGCAGGCAGGTTTCAGGCAGGCCCTGGCTCACGCCTGCCTACGATGCCGGTTACTAAATTTCCAA AATACCTTATTTACTCTACAAATCCTCTACCCCGACATTACATCTCAAAACTCATCCTATTAATT TCTGCCTTAGGCGATAGCACTACTAATTGATAGGAAAAGACGACT Right flanking sequence: Indices 793098 -- 793597 TGAATTATTATACTAATTTGATTTTAGGCAGCCTCTTTCGTCAAAAAAAAATAACTTGTGTCACC ACACCACACCTCCCACGTTTTCGGTGAGTGAAGCTTCTGCTCGCTGTTAAGCAGATATTCATAGG GAAATCATCCGTAAATCCATTCAAGTCCTCTTTATTTTCTTCTTCTTCGACCAAATTAGTATACA GATGTCATCAACTTTTTTGTTTCTTTTTGAGGGCCCAGGCTGTTCATTACAGTTTGATCTACAAA AAATGCGGGAAATTTTTTTTTGCTTTTTGCCCAAAAGAATGTGATGTCAGCACGTTCTTAACCAT GCAAAATCAGTTGAGAACTCTGCGTCTCTTCTCCCGCGTTTTTTGTAGATCTACGTAGATCAAAA CGAAGTGGGAAACTCTGACACCACGTGCTTTGAGAAAAAATTTGAAAAAAACCTTTTTAAAAATT TGGCATTTTCAGTTTTTTTTCTTTACAAAATTTTTTTGAACGAAT Found at i:793167 original size:5 final size:5 Alignment explanation
Indices: 793159--793172 Score: 28 Period size: 5 Copynumber: 2.8 Consensus size: 5 793149 TAACTTGTGT 793159 CACCA CACCA CACC 1 CACCA CACCA CACC 793173 TCCCACGTTT Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 9 1.00 ACGTcount: A:0.36, C:0.64, G:0.00, T:0.00 Consensus pattern (5 bp): CACCA Left flanking sequence: Indices 792659 -- 793158 AAAAGTCTGCCTCTCTTCTCCCGCATTTTTCGAAGATCATACCAAAATGGGGCACTTTGACGCCA CGTGTAGACTGTAGGCCATAAACCGCCTGCCTGCCTGATTTTCAGGCTACCTACGCCTGCCTGTC GCCCCAATCCACGCCTTATGCTAAAACACATTCATTTCTTAATTTGATTTTCACCAAAGTGATAA AAAAGATAAATTAAAAATTAGTACATTCTCGTCAAAATGCAAAAAGAGTCGTAAGGCAGGCAGGT TTCAGGCAGGCCCTGGCTCACGCCTGCCTACGATGCCGGTTACTAAATTTCCAAAATACCTTATT TACTCTACAAATCCTCTACCCCGACATTACATCTCAAAACTCATCCTATTAATTTCTGCCTTAGG CGATAGCACTACTAATTGATAGGAAAAGACGACTTGTGTGTGTGTGTGTTGAATTATTATACTAA TTTGATTTTAGGCAGCCTCTTTCGTCAAAAAAAAATAACTTGTGT Right flanking sequence: Indices 793173 -- 793672 TCCCACGTTTTCGGTGAGTGAAGCTTCTGCTCGCTGTTAAGCAGATATTCATAGGGAAATCATCC GTAAATCCATTCAAGTCCTCTTTATTTTCTTCTTCTTCGACCAAATTAGTATACAGATGTCATCA ACTTTTTTGTTTCTTTTTGAGGGCCCAGGCTGTTCATTACAGTTTGATCTACAAAAAATGCGGGA AATTTTTTTTTGCTTTTTGCCCAAAAGAATGTGATGTCAGCACGTTCTTAACCATGCAAAATCAG TTGAGAACTCTGCGTCTCTTCTCCCGCGTTTTTTGTAGATCTACGTAGATCAAAACGAAGTGGGA AACTCTGACACCACGTGCTTTGAGAAAAAATTTGAAAAAAACCTTTTTAAAAATTTGGCATTTTC AGTTTTTTTTCTTTACAAAATTTTTTTGAACGAATCTAAAAATGTTTCGATAAATTCTAGATTTT TTGAAAAACTGTCTGAAATTTTTTTTGAGAACAATGATGACTTGA Found at i:793827 original size:6 final size:6 Alignment explanation
Indices: 793816--793831 Score: 32 Period size: 6 Copynumber: 2.7 Consensus size: 6 793806 AAAAACTATT 793816 ATTTAA ATTTAA ATTT 1 ATTTAA ATTTAA ATTT 793832 CAGAAATCCT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56 Consensus pattern (6 bp): ATTTAA Left flanking sequence: Indices 793316 -- 793815 TTTTTGAGGGCCCAGGCTGTTCATTACAGTTTGATCTACAAAAAATGCGGGAAATTTTTTTTTGC TTTTTGCCCAAAAGAATGTGATGTCAGCACGTTCTTAACCATGCAAAATCAGTTGAGAACTCTGC GTCTCTTCTCCCGCGTTTTTTGTAGATCTACGTAGATCAAAACGAAGTGGGAAACTCTGACACCA CGTGCTTTGAGAAAAAATTTGAAAAAAACCTTTTTAAAAATTTGGCATTTTCAGTTTTTTTTCTT TACAAAATTTTTTTGAACGAATCTAAAAATGTTTCGATAAATTCTAGATTTTTTGAAAAACTGTC TGAAATTTTTTTTGAGAACAATGATGACTTGAATATTGTAGAAAATCGTAAAAATAAGTTTTAAA AAACCAAAAAAAAATGGGCGAAGCCTAAAATTACAGAAATTGGACCATAAAAGTTTCCAATTTTT TCTTCACAACTTTTTTCAAAATTGCTGAAATAAAAAAAAACTATT Right flanking sequence: Indices 793832 -- 794331 CAGAAATCCTAATTTTGACGCCGATTTTTAAAATTATAAGGATTTGTTTTTCCTGCAAATTCTTT TTTAGAAACTTACAGTTTGTCGGTTTGTCGATAGAGCGTGCTTATTCACCAGGCTGTCCATTACA GTTTGATCTACAACAGTGCGGGAACTTTTTTTTTGCTTTTTGTCCAAAAGACTGTGATATCAGCA CGTTCTTAACCATGCAAAATCAGTTCCGCATTTTTTGTAGATCAACGTAGATCAAACCGAAATGG GGCACTCAGACACCATTTGGGGGGCCTAGAAACCGGTCCCTTTCTCATTCAAAGTGCTCTCTGTT ATCAAGTCTCCCACGCTTTATGCATTCAACTTTGTACAGTTCACACGAGCACCCACGACTTGATT ATTCAACATTATACAGAACTAACTATTCGAATCTCAACATGTCTTCTTGCCGAATTTAATCAACT TTGACTTCTTCTTCTTCTTCGACTTCTTTATACAACTACTCATCT Found at i:794539 original size:3 final size:3 Alignment explanation
Indices: 794531--794547 Score: 34 Period size: 3 Copynumber: 5.7 Consensus size: 3 794521 GTGTGTCAAC 794531 GAT GAT GAT GAT GAT GA 1 GAT GAT GAT GAT GAT GA 794548 AAAGAGCAGA Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 14 1.00 ACGTcount: A:0.35, C:0.00, G:0.35, T:0.29 Consensus pattern (3 bp): GAT Left flanking sequence: Indices 794031 -- 794530 CTTAACCATGCAAAATCAGTTCCGCATTTTTTGTAGATCAACGTAGATCAAACCGAAATGGGGCA CTCAGACACCATTTGGGGGGCCTAGAAACCGGTCCCTTTCTCATTCAAAGTGCTCTCTGTTATCA AGTCTCCCACGCTTTATGCATTCAACTTTGTACAGTTCACACGAGCACCCACGACTTGATTATTC AACATTATACAGAACTAACTATTCGAATCTCAACATGTCTTCTTGCCGAATTTAATCAACTTTGA CTTCTTCTTCTTCTTCGACTTCTTTATACAACTACTCATCTTCTAGTTGCCCCTCTAGTTGCCTC ACACAAGCAAAATTTCTTTTGAAATGAAATTTAAACGAATTGACTAGTCAAAATTTCATCAATTT TCTACTAGAGAGAAGCGACGAGATTGACTTTTGGCAAATATAGAAGAGAGAGGCACCGAAAATGA ATTAGATTTAACACAACAACGAGTAGATGAGTTGTGTGTGTCAAC Right flanking sequence: Indices 794548 -- 795047 AAAGAGCAGAGGAGCAAGCATGAGTGATTTCTGCGGCGGAGGTCGCGGCGGATGAGGAGCATGAA GAAGGCTAACGAGCTGTATGGCGATGCGGCTAAAAATTGATGATTACTGTAGATTTGGAGCTTTA CACCGTTTAACTGGCTACGATTACATACAGACTTGTTTTAGAATATTCTGTATTTGAACCTAATA ATACAAATTGCCGGTGTGCCGATTTGTCGGAAATTTTCAATTCCGGCAACTTGCCGGTTTGCCGA TTTGCCGTAAATTTTCAATTCCGGCAACTTACCCGTTTGCCGATTTGTCGGAAATTTTCAATTTT GGCAAACTGCCGGTTTGCCGATTTGCCGGAAATTTTCAGTTCCGGCATTGTGCCGGTTTTCCGAT TTGCCGGAAATTTTCAATTCCGGCAATTTTCCGGTTTGCCGGTTTTCCGTTTGCCGGATAACAAA GTGTTTAGAGGGATTTTTTTATAAGAAGGAAACTCTTAAAACTGT Found at i:795867 original size:2 final size:2 Alignment explanation
Indices: 795860--795877 Score: 36 Period size: 2 Copynumber: 9.0 Consensus size: 2 795850 AGTCAAATAG 795860 AC AC AC AC AC AC AC AC AC 1 AC AC AC AC AC AC AC AC AC 795878 TCAATTTTAA Statistics Matches: 16, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 16 1.00 ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00 Consensus pattern (2 bp): AC Left flanking sequence: Indices 795360 -- 795859 TCACAGTAGTTTAAGGTTATGGTGCAGTTTCTGGTCAATGGATCAGGTCTCTTACCGCGAAAATT TTAATACCGTGAATGTGAAGCTTTGAAAATTTTCTGCCGTAAATTGTCAATTTTCTGCCGCACTT TGTCAATTATCTCATAAAGGTCACTTAAGTTAGCCAAACCGTGAGCCAAAACTGCCCCTTATTCC TCATGCCGTCTTGGAGGAAATCTAGAGCAAACCCTGGTCCATATTCGGACAAGGTCCCCTTTCTT CCCCCAAGCGTCTATCTAACTTTTCCTAACTACATATAACGGAATTAATAATCCTATCCCCAATT TAACGTGTCCTTAGTTCTCTCCCTCCTCACCGTCTTCTAGTTTCATCCATGTCTCGCCTCATTTC ACCCGATTGACGATCATCTCGGCTCCACACTTTGACACCATAGCGCGAATGAAAAAAAAGAGTGA GAAAAGGGGAAAAAAGTTGCTGCCCTATTATTAGGAGTCAAATAG Right flanking sequence: Indices 795878 -- 796377 TCAATTTTAATGGATTACGCACGATTTGACACCATCGACACCAATTTGGAAATGGGGGCACATAG ATACATACACAAAAGGAGTTGTACTACTAGTTTTGGAACTAACATCATTCTAACATCTTTTCATT TATGATTTGATTTATGCAAATGTCCTTGATTCGTGACTTCTTGTATAGTAGTTGGGATAAGTATA ATCATGGTAGTTGCTCAAGACTAAGCTCTTTAGCAGTTTTAAGGTATGCCCCAGTTCGGGATTCC GGCTTGCTTTAAGATTGTGTCAGGTCCGGCCCAGGTTGTCTAAAAAATACAGGTCTGCTCCAGGA CGGTATACCATCACTATATATAAAGCACGTGTCGTTCCGTCACTTTGTAGTTTGATCTTTGATCT TTGGTCTTTGAACTCTGTAGTTTGTAGTCTCATCACACAAGAGAGGTCACATAGGCCCGGCCCCT TTTGTGACGTCATCACAAATTGGCGGGAAATTCAAATTTTCTGAG Found at i:797143 original size:6 final size:6 Alignment explanation
Indices: 797132--797149 Score: 36 Period size: 6 Copynumber: 3.0 Consensus size: 6 797122 TACCTTCACA 797132 AATTTC AATTTC AATTTC 1 AATTTC AATTTC AATTTC 797150 CTCTCTCTCC Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 12 1.00 ACGTcount: A:0.33, C:0.17, G:0.00, T:0.50 Consensus pattern (6 bp): AATTTC Left flanking sequence: Indices 796632 -- 797131 TGTATCATACCTACCTAGGCCCACCACAGGTGCATCTCTCACAGATCTTCCACAGGTGTTTCTAA GTCTGCATCAGATCTGCACCAGGTCTGTTTTTAGTTTTGCCTGGGTGCAGCCCAGTAGTCTACCT CACTATCAAGCAGGTCCTGACACCAGTTCCTAGGTCTCACATTCAGGCTTCTAGGCGGATAGTCT ACCTAGCTAAAGCTTCAACCTCCACTGTTTTAAAGGCTTCCCCTTTCTCAAACTTCAACTAACAT TAATACATACATATGTTATTAATTCGCGACTCGGCGACTAATAACAATAATTCAAAACCTCTTTC CTGGCAATGCTTCCGGTACTCAACACGGAGAGAGAGGTGGCAGGTATCCGGTAATTTATTAACTC GAGCCGCGCACCCTGGCTCCCAGAGCACACAGCCCCGATGATCGCTCATGCACGAGTACTCACGA GGTGGTGGTGAGAGGTAGGTTGGAGAAAGCGGTTCTACCTTCACA Right flanking sequence: Indices 797150 -- 797649 CTCTCTCTCCGTTTTACTCGGGCCCCCCCCCCCCCCTTCTTTCAATTTTTCGCCCCAAATTTGTG CTCCTTTAATGGAAAGTTTTTGAGTGTGTGAAAAAGAGAGAGAGAGAGACACCTTCGTGTCACGC CAATTGCACTAATATGTGCTCTCCCCACCTAGAGCTACCAAAATGTTCAATTCACAATTTCCGAA CTAATTCGTGTCAAGTTTTTAGTTGGTCCTAACTCTTTGGCCTAGAAATTTAGATTTCTAGGTCA TCCATCTAGATGCGGTGGCCTAGAATCCTAAGCTTTAGATGCCCAGGCCATCAGGCCTAGATTCT GAAATGTTGTGATTTTTCTAGGCCATCAACTTTGACCCAAAAGCCCTCTAATTTTTAGGCCATGA ATCTAGGAACCTATCTAGAGGCCTGATCCTTTGCTTTCTTGCCAAAAACTAGAGATCAATGCCCT AGAAGCTCACAAAACTTTGGCCTAATAATTTCTAGGCCACCAATT Found at i:797178 original size:1 final size:1 Alignment explanation
Indices: 797172--797185 Score: 28 Period size: 1 Copynumber: 14.0 Consensus size: 1 797162 TTTACTCGGG 797172 CCCCCCCCCCCCCC 1 CCCCCCCCCCCCCC 797186 TTCTTTCAAT Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 13 1.00 ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00 Consensus pattern (1 bp): C Left flanking sequence: Indices 796672 -- 797171 ACAGATCTTCCACAGGTGTTTCTAAGTCTGCATCAGATCTGCACCAGGTCTGTTTTTAGTTTTGC CTGGGTGCAGCCCAGTAGTCTACCTCACTATCAAGCAGGTCCTGACACCAGTTCCTAGGTCTCAC ATTCAGGCTTCTAGGCGGATAGTCTACCTAGCTAAAGCTTCAACCTCCACTGTTTTAAAGGCTTC CCCTTTCTCAAACTTCAACTAACATTAATACATACATATGTTATTAATTCGCGACTCGGCGACTA ATAACAATAATTCAAAACCTCTTTCCTGGCAATGCTTCCGGTACTCAACACGGAGAGAGAGGTGG CAGGTATCCGGTAATTTATTAACTCGAGCCGCGCACCCTGGCTCCCAGAGCACACAGCCCCGATG ATCGCTCATGCACGAGTACTCACGAGGTGGTGGTGAGAGGTAGGTTGGAGAAAGCGGTTCTACCT TCACAAATTTCAATTTCAATTTCCTCTCTCTCCGTTTTACTCGGG Right flanking sequence: Indices 797186 -- 797685 TTCTTTCAATTTTTCGCCCCAAATTTGTGCTCCTTTAATGGAAAGTTTTTGAGTGTGTGAAAAAG AGAGAGAGAGAGACACCTTCGTGTCACGCCAATTGCACTAATATGTGCTCTCCCCACCTAGAGCT ACCAAAATGTTCAATTCACAATTTCCGAACTAATTCGTGTCAAGTTTTTAGTTGGTCCTAACTCT TTGGCCTAGAAATTTAGATTTCTAGGTCATCCATCTAGATGCGGTGGCCTAGAATCCTAAGCTTT AGATGCCCAGGCCATCAGGCCTAGATTCTGAAATGTTGTGATTTTTCTAGGCCATCAACTTTGAC CCAAAAGCCCTCTAATTTTTAGGCCATGAATCTAGGAACCTATCTAGAGGCCTGATCCTTTGCTT TCTTGCCAAAAACTAGAGATCAATGCCCTAGAAGCTCACAAAACTTTGGCCTAATAATTTCTAGG CCACCAATTTTTTAAAGATAGCCTAAGTCATCAACCTAAAATTCA Found at i:797254 original size:2 final size:2 Alignment explanation
Indices: 797249--797263 Score: 30 Period size: 2 Copynumber: 7.5 Consensus size: 2 797239 TGTGTGAAAA 797249 AG AG AG AG AG AG AG A 1 AG AG AG AG AG AG AG A 797264 CACCTTCGTG Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 13 1.00 ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00 Consensus pattern (2 bp): AG Left flanking sequence: Indices 796749 -- 797248 CAGTAGTCTACCTCACTATCAAGCAGGTCCTGACACCAGTTCCTAGGTCTCACATTCAGGCTTCT AGGCGGATAGTCTACCTAGCTAAAGCTTCAACCTCCACTGTTTTAAAGGCTTCCCCTTTCTCAAA CTTCAACTAACATTAATACATACATATGTTATTAATTCGCGACTCGGCGACTAATAACAATAATT CAAAACCTCTTTCCTGGCAATGCTTCCGGTACTCAACACGGAGAGAGAGGTGGCAGGTATCCGGT AATTTATTAACTCGAGCCGCGCACCCTGGCTCCCAGAGCACACAGCCCCGATGATCGCTCATGCA CGAGTACTCACGAGGTGGTGGTGAGAGGTAGGTTGGAGAAAGCGGTTCTACCTTCACAAATTTCA ATTTCAATTTCCTCTCTCTCCGTTTTACTCGGGCCCCCCCCCCCCCCTTCTTTCAATTTTTCGCC CCAAATTTGTGCTCCTTTAATGGAAAGTTTTTGAGTGTGTGAAAA Right flanking sequence: Indices 797264 -- 797763 CACCTTCGTGTCACGCCAATTGCACTAATATGTGCTCTCCCCACCTAGAGCTACCAAAATGTTCA ATTCACAATTTCCGAACTAATTCGTGTCAAGTTTTTAGTTGGTCCTAACTCTTTGGCCTAGAAAT TTAGATTTCTAGGTCATCCATCTAGATGCGGTGGCCTAGAATCCTAAGCTTTAGATGCCCAGGCC ATCAGGCCTAGATTCTGAAATGTTGTGATTTTTCTAGGCCATCAACTTTGACCCAAAAGCCCTCT AATTTTTAGGCCATGAATCTAGGAACCTATCTAGAGGCCTGATCCTTTGCTTTCTTGCCAAAAAC TAGAGATCAATGCCCTAGAAGCTCACAAAACTTTGGCCTAATAATTTCTAGGCCACCAATTTTTT AAAGATAGCCTAAGTCATCAACCTAAAATTCACGGCTTAGAAATCATGAAATTCGCTTTTAAGGC CTCTGACTTCATAGCAGTGGCCTAGAACTCCAACTGTCAGTAGTC Found at i:798620 original size:3 final size:3 Alignment explanation
Indices: 798612--798633 Score: 44 Period size: 3 Copynumber: 7.3 Consensus size: 3 798602 TGCAACCAAC 798612 ATA ATA ATA ATA ATA ATA ATA A 1 ATA ATA ATA ATA ATA ATA ATA A 798634 GTGAATGTGC Statistics Matches: 19, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 19 1.00 ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32 Consensus pattern (3 bp): ATA Left flanking sequence: Indices 798112 -- 798611 TGTGCTGTATCCTAGACTATCATCTAGACCCCAATGGCCTAGATTCCTGAAAATGTGTTTTTTCG GCCTGAAATAGGCCTAACATTTTCCAGTCCACCAACTCTTTTAAGATGACCTATAAGTTTAATCC TAGCTTGCCAACTATAAATAATTGGCCTAGAAGCTCCTAGGCCACCATCTAAAAATCGATGGCCT AGAAACCTCCCATTTTTTGTATCCTAGGTCACCAACAACCACTGATGCCCAAGACCCCGGCTTCT TATTTCATAATGAGCAGCAAAATGAGCTACCGTACCCCTTCTACACACTTCCTCCCTCTCCACAC CCATTTCCCCTCATTTTCGTCTATTTTAGCGGCGGCGGCGCGGGATAAATTTGTGAGAGGTGAGC TGCTCACAATAATGGGCTTGTTGTAATAGGCGGCAGTGGTAGTGGTGTATGGATAATTGTGAGTT CCCAAACACACAAAACTTTTTCGCCGCAATTGTTATGCAACCAAC Right flanking sequence: Indices 798634 -- 799133 GTGAATGTGCATAAATGTGCTCTTTTTCGCGTCTCCACACCCGTCCTGATGGGGACGACGCTTCG TTGAATAGTTGGAATAATAATAATAAATTGGAAAAATTTGGGCGCCCCCCTCCTAACACCCTAAC ACACACGAAATTTCATTTCGCGCGCGCTTCGAAAACAAATTGAAGACAAGTTTTTCGCGAGACAA GTTATGATAATTTGTGGGATGTGGTCCCCGCCGGCAGCTTCCATCAATTTGGAGCAAATTTGTGC TCTCGCAAACCTTCTTAAAGAAGGGTTACACTAACAAAGTTTGTCGGAATCGATATTTTTGTAAG TGGGCCTGAACCCCCGGTCTTTAAATTGATAGGCATTCTAGGGCTTCCATGGGAGACAGGCGCGG TTTTAGGGCCTGACGTCTGCCTCTCGCCTCATTTCTGCACTATGGCGAGAAGCCAAAGACTTGGT GTTCACACTTTGTGCCAGAGTGTCTCATTTCGGCTTGATCTACGT Found at i:798719 original size:3 final size:3 Alignment explanation
Indices: 798711--798724 Score: 28 Period size: 3 Copynumber: 4.7 Consensus size: 3 798701 GAATAGTTGG 798711 AAT AAT AAT AAT AA 1 AAT AAT AAT AAT AA 798725 ATTGGAAAAA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 11 1.00 ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29 Consensus pattern (3 bp): AAT Left flanking sequence: Indices 798211 -- 798710 ACTCTTTTAAGATGACCTATAAGTTTAATCCTAGCTTGCCAACTATAAATAATTGGCCTAGAAGC TCCTAGGCCACCATCTAAAAATCGATGGCCTAGAAACCTCCCATTTTTTGTATCCTAGGTCACCA ACAACCACTGATGCCCAAGACCCCGGCTTCTTATTTCATAATGAGCAGCAAAATGAGCTACCGTA CCCCTTCTACACACTTCCTCCCTCTCCACACCCATTTCCCCTCATTTTCGTCTATTTTAGCGGCG GCGGCGCGGGATAAATTTGTGAGAGGTGAGCTGCTCACAATAATGGGCTTGTTGTAATAGGCGGC AGTGGTAGTGGTGTATGGATAATTGTGAGTTCCCAAACACACAAAACTTTTTCGCCGCAATTGTT ATGCAACCAACATAATAATAATAATAATAATAAGTGAATGTGCATAAATGTGCTCTTTTTCGCGT CTCCACACCCGTCCTGATGGGGACGACGCTTCGTTGAATAGTTGG Right flanking sequence: Indices 798725 -- 799224 ATTGGAAAAATTTGGGCGCCCCCCTCCTAACACCCTAACACACACGAAATTTCATTTCGCGCGCG CTTCGAAAACAAATTGAAGACAAGTTTTTCGCGAGACAAGTTATGATAATTTGTGGGATGTGGTC CCCGCCGGCAGCTTCCATCAATTTGGAGCAAATTTGTGCTCTCGCAAACCTTCTTAAAGAAGGGT TACACTAACAAAGTTTGTCGGAATCGATATTTTTGTAAGTGGGCCTGAACCCCCGGTCTTTAAAT TGATAGGCATTCTAGGGCTTCCATGGGAGACAGGCGCGGTTTTAGGGCCTGACGTCTGCCTCTCG CCTCATTTCTGCACTATGGCGAGAAGCCAAAGACTTGGTGTTCACACTTTGTGCCAGAGTGTCTC ATTTCGGCTTGATCTACGTAGATCTACAAAAAATGCGGGAGAAGAGAAGCAGAGTTCTCAACTGA TTTTACATGGTAACCAGAGCGTGCTGACGTCAAATTTTTTTTGGA Found at i:800074 original size:1 final size:1 Alignment explanation
Indices: 800042--800055 Score: 28 Period size: 1 Copynumber: 14.0 Consensus size: 1 800032 ACGAGCAAGA 800042 GGGGGGGGGGGGGG 1 GGGGGGGGGGGGGG 800056 TCTAATCGAA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 13 1.00 ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00 Consensus pattern (1 bp): G Left flanking sequence: Indices 799542 -- 800041 GTCTTTTTGTCACAACTTCGCTACACTGTGTTTTTCTCCACTTCTACGACTTTAAAGGAGGGCGC ATTTATGCGACTCACGTGATGTCAGGCAGTCTCATTGCGGTTTGATCTACAAAAAATGCGGGAAA CTTTCCACCAGGAAATTGTGACGTCAGCACACTCTTGCGAGATCAGTTGAAAAGTCTGCGTCTCT TCCCCCGCATTTTTCGAAGATCAAACCAAAATGGGACATTCTGACACCACGTGGTGACTTAGGAT CAATGTAGATCGTTTTATAGGCCATCCATTGATTTTTAGAGCTCGTGGCGGGACCATTTTAAATG AATTTCCAAAATTTCCAAAAACCTAATTTTTTTGTCAATTCACAAGTCCCCCGGACCCCCTCCAT TGTCCCCCCGTTCACAACTTCCTCCCTCGTTAACCACCCATTTAGCGGGACAAAATTAGCGAATC ATTGACTCATAATCAAGTAAATCGGTGAATGCTCGACGAGCAAGA Right flanking sequence: Indices 800056 -- 800555 TCTAATCGAATTACGGGGGAAGGGACCCCTCCGCGCGACACCTCGCTGCCAATTAACAAGTCAAC TACTTGGGGGGGGGGGGGGGCCTCCTCACAACAATGTTTGTATTATATTTCTTGTTATTATGATT ATTATTATTATTATTATTAGAAATTAGTTAGTATGAATATATAATATCAACTAAAAACAAAATGA CAGTTAATAATAATTGAAGTCATCCAATAGGTGCCAATTAGTCAAAGAGAGGGGTCTGTGAAAAC AGAAATAGAAGAGAGAAGGCGGGGGAGAGGGGCGCTCTCAAATAATTAATCTGGGCTCCGTGGGC TCGTAAAATTCCGATAAAATGGCTTGTTTGTAATTAGCTAATTCACGGAATCTTTTTTTTTTGTT GGGGTTTTACTATGTTTTTGAACAACTTCCTGTTATAACATGTTTCAAAAAAACTATTGACCTCA ATGGGGACTTGAACCCTGGTGTTGAGATTGGTAGTCTGTTAACCA Found at i:800132 original size:1 final size:1 Alignment explanation
Indices: 800126--800140 Score: 30 Period size: 1 Copynumber: 15.0 Consensus size: 1 800116 TCAACTACTT 800126 GGGGGGGGGGGGGGG 1 GGGGGGGGGGGGGGG 800141 CCTCCTCACA Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 14 1.00 ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00 Consensus pattern (1 bp): G Left flanking sequence: Indices 799626 -- 800125 TGTCAGGCAGTCTCATTGCGGTTTGATCTACAAAAAATGCGGGAAACTTTCCACCAGGAAATTGT GACGTCAGCACACTCTTGCGAGATCAGTTGAAAAGTCTGCGTCTCTTCCCCCGCATTTTTCGAAG ATCAAACCAAAATGGGACATTCTGACACCACGTGGTGACTTAGGATCAATGTAGATCGTTTTATA GGCCATCCATTGATTTTTAGAGCTCGTGGCGGGACCATTTTAAATGAATTTCCAAAATTTCCAAA AACCTAATTTTTTTGTCAATTCACAAGTCCCCCGGACCCCCTCCATTGTCCCCCCGTTCACAACT TCCTCCCTCGTTAACCACCCATTTAGCGGGACAAAATTAGCGAATCATTGACTCATAATCAAGTA AATCGGTGAATGCTCGACGAGCAAGAGGGGGGGGGGGGGGTCTAATCGAATTACGGGGGAAGGGA CCCCTCCGCGCGACACCTCGCTGCCAATTAACAAGTCAACTACTT Right flanking sequence: Indices 800141 -- 800640 CCTCCTCACAACAATGTTTGTATTATATTTCTTGTTATTATGATTATTATTATTATTATTATTAG AAATTAGTTAGTATGAATATATAATATCAACTAAAAACAAAATGACAGTTAATAATAATTGAAGT CATCCAATAGGTGCCAATTAGTCAAAGAGAGGGGTCTGTGAAAACAGAAATAGAAGAGAGAAGGC GGGGGAGAGGGGCGCTCTCAAATAATTAATCTGGGCTCCGTGGGCTCGTAAAATTCCGATAAAAT GGCTTGTTTGTAATTAGCTAATTCACGGAATCTTTTTTTTTTGTTGGGGTTTTACTATGTTTTTG AACAACTTCCTGTTATAACATGTTTCAAAAAAACTATTGACCTCAATGGGGACTTGAACCCTGGT GTTGAGATTGGTAGTCTGTTAACCAGTACACCAAAAATTGCAATTTTTGATTTTTGTTTTGTCTA TTTTTTTGAATACAACGATAAGTAAGGATCATTTAGATTTAGAAA Found at i:800637 original size:6 final size:6 Alignment explanation
Indices: 800626--800638 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 800616 AGTAAGGATC 800626 ATTTAG ATTTAG A 1 ATTTAG ATTTAG A 800639 AAAAAAAAAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.38, C:0.00, G:0.15, T:0.46 Consensus pattern (6 bp): ATTTAG Left flanking sequence: Indices 800126 -- 800625 GGGGGGGGGGGGGGGCCTCCTCACAACAATGTTTGTATTATATTTCTTGTTATTATGATTATTAT TATTATTATTATTAGAAATTAGTTAGTATGAATATATAATATCAACTAAAAACAAAATGACAGTT AATAATAATTGAAGTCATCCAATAGGTGCCAATTAGTCAAAGAGAGGGGTCTGTGAAAACAGAAA TAGAAGAGAGAAGGCGGGGGAGAGGGGCGCTCTCAAATAATTAATCTGGGCTCCGTGGGCTCGTA AAATTCCGATAAAATGGCTTGTTTGTAATTAGCTAATTCACGGAATCTTTTTTTTTTGTTGGGGT TTTACTATGTTTTTGAACAACTTCCTGTTATAACATGTTTCAAAAAAACTATTGACCTCAATGGG GACTTGAACCCTGGTGTTGAGATTGGTAGTCTGTTAACCAGTACACCAAAAATTGCAATTTTTGA TTTTTGTTTTGTCTATTTTTTTGAATACAACGATAAGTAAGGATC Right flanking sequence: Indices 800639 -- 801138 AAAAAAAAATCAAATTTTGTAAAAATTTTCTAAAAAGTTATGAACATTCCACTTTCACAGATTTC TGGCTTCCCTCATAAATTGAAATGGAAGAGTTTTTGGCGAACAAGGCCAGATGCGTTGCGTGTCG CGTCGCGGCTCGATTTTAGTTGTAATGCATTTGTCCGTGTGGAGTCCACGACTTCCCCCGTTGTC CGCCAGACGATTGTAAATGGAGCGCGAAAAATTCAATGAGAAAGGCCAGAACCCCGTGCACTTTT TTGTTTCTAAAACTGAAAATTTTGAATTTTGAAATTTTCCTTGGTTTTACAGTATACAAAATCTT AGTTAGAGTTCGCAAAAATTATTGACACTGGTGGGGGCTCGAACCCCTGAGGTGGCATCCCTGTT AGCCACTGCGCCAAAATTGCTAAAACTTCAAAAAAAAAATTTTAGACCGTTTTTAAGGTTTTTAG ACTTCCGACTCTTCAAAAATTCCTATACAAAGTCTTCGTAAAACT Found at i:801374 original size:2 final size:2 Alignment explanation
Indices: 801367--801380 Score: 28 Period size: 2 Copynumber: 7.0 Consensus size: 2 801357 GTGTTCTTCC 801367 TG TG TG TG TG TG TG 1 TG TG TG TG TG TG TG 801381 CCCCTAGTTA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 12 1.00 ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50 Consensus pattern (2 bp): TG Left flanking sequence: Indices 800867 -- 801366 CAATGAGAAAGGCCAGAACCCCGTGCACTTTTTTGTTTCTAAAACTGAAAATTTTGAATTTTGAA ATTTTCCTTGGTTTTACAGTATACAAAATCTTAGTTAGAGTTCGCAAAAATTATTGACACTGGTG GGGGCTCGAACCCCTGAGGTGGCATCCCTGTTAGCCACTGCGCCAAAATTGCTAAAACTTCAAAA AAAAAATTTTAGACCGTTTTTAAGGTTTTTAGACTTCCGACTCTTCAAAAATTCCTATACAAAGT CTTCGTAAAACTAATGACTGGGGGGCTCGAACCCCGGTCATCATATCAGTAGTCATCCCTGTTAG CCACTACACCACTTGCCCAGACGTGTTTCTGGTCTGTTTTACGGTGCAGCGTGGCCTAAAAAAAA CTAGTCAGCCACCAATTCGAAAAGTCCATAGACCAAGTTAATATAGAAATTCTTCAAATTCGAGC CAACCAACTAATATATTCACTAACCTATTTTCGCCGTGTTCTTCC Right flanking sequence: Indices 801381 -- 801880 CCCCTAGTTAGGCCTAGCCCCCCCCCTTATTTTACTTGCTTCACAATTCAATTGGCCCCCACACA GTTACAGTAGTCATAATCATTTTGTGTCGGGTTTTCGACACATCGTTTAAACGTGTTACCTCTCT CGGGGCCCCCTCTTCTCCTACTTCTTATTTGCTCAAAATTTGCGCGTCGAAATTTCTTCGTCGTG CGCTGCCCCTTCCGAATAATCAGATTCACCAATGTATAAAATAGGCCACGCCTCACTTTTTCCAC ACCCATCATCTTCCCTCAACTTTCCTCTTCTCAAATGCCTAATCAGCCAGTTATAACGAGGGTGC TCTTCGTGTGGCGCCCCGCCCATTTTATTGCTCCTCTCACGCTTCATTCTCACTTTTTCTGGGGA TCCTTTTTTTTGCAGACCTAAAAATTTGAGCTCAGCCATATTTTTTTTGTAAATATAATCAAAAA AAAATAGACATTAGTCAAAAAAGTTGTTTTAAGCCTAAAAAAATT Found at i:802551 original size:4 final size:4 Alignment explanation
Indices: 802542--802556 Score: 30 Period size: 4 Copynumber: 3.8 Consensus size: 4 802532 CAGACGTTCT 802542 CTGC CTGC CTGC CTG 1 CTGC CTGC CTGC CTG 802557 ACTTTAAGGC Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 11 1.00 ACGTcount: A:0.00, C:0.47, G:0.27, T:0.27 Consensus pattern (4 bp): CTGC Left flanking sequence: Indices 802042 -- 802541 TGACGCCAAGCCTAAGCCTACGCCTAAGCCAAAGCCTAGGCCTAAGCCTGGGCCGAAGCTGAGAC CTAAGCTTAAGCCTAAGCCTAAGACTAAGACTGAGTTCAAGCCTAAGCCTAAGACTAAGCCTGAG TCTCAGCCTAAGCCTAAGCCTAAGCCTAAGCCATTTTTAAAAAGCTTAAAAATTTTTGCAATTAC TATTTTTTCTGAAAATCTGTAAAAATATCGAATTTTTAGAGTTGCTATAAAATTTAAAATAATAT TCAAAAAATAATCCGAAAAAATTAAATTTTTTTTCTCAAAACGTAGATCATACAGAATCAGCTTT AAAAAATTCAAACCATTTTTCGTTTCAAAAATGTTCAGAAAATTTGTAAAACTTGAGTTTTGAAG AAAGTTTTCATAAACTAGCTCTTGAATAGGGTTTTTAAGTAGGCGTTAAAACGCTTGCCTGCCTG ACCTTCAGGCGACTTTCGCCTGCCTGCTTGACTTTCAGACGTTCT Right flanking sequence: Indices 802557 -- 803056 ACTTTAAGGCGACCTCCGCCTGCCTCTCGCCTCAATCCGAGCCTTATCTCTTAAAATGTTTTTCA TCAAATTGATAAAAATACGGAAATTACAAAATTTTGTAAGTTCATGCCAAAATGCAGGCATCAGG CCCTGAGGCCACGCCTGCCTAGGCCTCCGACTTTCGTTCTACAATTGTCGTTGCCGTTTCCTTTA TCCCATTTTCATACCCCAAAGTTATGATTTTTCTTACACCCCTTGCGCTGCTGCTGCTTCCGCTC CCGTGATCTTATGAATCAGTAGTCAGAACTGCAGGTGTGAATCTCCACAATGATCACCCAATAAA CGCGAAACACCATTAGAAACAAAGTGTCCCCCGTTTTTTTTTTCTGAGAGTGTCGGCACCCCCCT AACATATGCGGGGAACATTGTCTCAAGTTTTGTGTGCTCCTCCAGCTCCTCCATATGGTTACCGT AGTCCCCTGTCAGTGTTGTGTAATTGTTGTTGTAACTATCCCCCG Found at i:803206 original size:3 final size:3 Alignment explanation
Indices: 803198--803210 Score: 26 Period size: 3 Copynumber: 4.3 Consensus size: 3 803188 GCAAGCACAT 803198 GTG GTG GTG GTG G 1 GTG GTG GTG GTG G 803211 GGCGAGCTCC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 10 1.00 ACGTcount: A:0.00, C:0.00, G:0.69, T:0.31 Consensus pattern (3 bp): GTG Left flanking sequence: Indices 802698 -- 803197 CGCCTGCCTAGGCCTCCGACTTTCGTTCTACAATTGTCGTTGCCGTTTCCTTTATCCCATTTTCA TACCCCAAAGTTATGATTTTTCTTACACCCCTTGCGCTGCTGCTGCTTCCGCTCCCGTGATCTTA TGAATCAGTAGTCAGAACTGCAGGTGTGAATCTCCACAATGATCACCCAATAAACGCGAAACACC ATTAGAAACAAAGTGTCCCCCGTTTTTTTTTTCTGAGAGTGTCGGCACCCCCCTAACATATGCGG GGAACATTGTCTCAAGTTTTGTGTGCTCCTCCAGCTCCTCCATATGGTTACCGTAGTCCCCTGTC AGTGTTGTGTAATTGTTGTTGTAACTATCCCCCGAATACCTCTCCTCACATTCATTCACAACACA GGTGTCAACTCAACTCTCAGTGCTCATTTGAAGTTTATGAAGTTTAGCTTCCGGGGATGGCTCTC CTGGGCTCCCCGCTCCCTCGAAAATTTAATTAATTGCAAGCACAT Right flanking sequence: Indices 803211 -- 803710 GGCGAGCTCCGCGCTTCCCCCCCCGCCCCGATTCTCTCTCTCTCATTTGCGACTCATTAGATTTT AAATCACTCTCAAACTTTCCACTTTTCCAACTTTCGCGTTTTTTAAATTTTTTTTTCACTTTTTC CTCACAAATTCATCCAAAAAAATTTCCAGAGTTGCCCCGCCCATATATTGGCTAAATGGTAGAAT GGACGTGGCACTTTTGACAATGGATGACAACAACAAACCGCCGACAAGTTCAGAGTCTACGGAGA GTAGGGGTGAGTTTGGCCGGGGGACCGATAATTTTTAGGCCAAGACTTCTTTTTTTTTAAATCAT TTTCAAAGGTACGTTACCTTCACGTGGTGCCAGGTTGTCCCATTGCTTTTTGATCTACAGAAAAT GCGGGATTTTTTCCCCAAAAAATGTGACATAAGCAAGTTTTTAAATCTTTTCTCCCGCATTTTTT TGTAGATCTACGTAGATCATACTCTGACACCACGTGTACCTTGAA Found at i:807032 original size:5 final size:5 Alignment explanation
Indices: 807022--807035 Score: 28 Period size: 5 Copynumber: 2.8 Consensus size: 5 807012 ATTGAGATGG 807022 AAACA AAACA AAAC 1 AAACA AAACA AAAC 807036 TGTCAATTTG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 9 1.00 ACGTcount: A:0.79, C:0.21, G:0.00, T:0.00 Consensus pattern (5 bp): AAACA Left flanking sequence: Indices 806522 -- 807021 GGCTAAGCCTAAGCCTAAGCCTGAGCCTAAGCTTTAGTCTAAGCGTAAGCCTAGGCCTAACCCTA ACCCTAAGCTTAAGCCTAAGCCTAACCCTAAGCCTAACCCTAAGCCTGAGCCTAAGCCTAAGCCT AAGCCTAAAGTCTTCGTGTCGAGACCCAATTATACTCAATTGAAAGCTCACAATGAGCTGAATTC AAATTTCTCAATGAAAATGTGAAATACTTTGATTTTACGGTCGGTGGCTTTACTCCCCCCGAACT TTGGAAAAAACTCTGAAATTTTTTTTTCATTGAATTCCAACCGGTTTCTACTCTCTCCGGCTATT AGTGTATGTGTCTTTCACTTCTTTGTTCTCGTCGGGTTGTTCCCAATTTCCAACCCTCGTTTTAC TCATTCCCCCTCTCATTTTCCCAATCCAATTAGTTATACCTATGGGGGGAGGTGACGGTGATGAT TCTCGCCATTAAGACCCCCCCCCTCTCCTGGGCCGATTGAGATGG Right flanking sequence: Indices 807036 -- 807535 TGTCAATTTGAATAAATTCGCAATTTGACGCGGGCGGCGCAGCGGGTTGCCGAGAAGGATATAAA CTGGGGAACTCTACTTAGCCCGTAAGGTGTCGGCTGCTACTATTTTATCACATCTCAATTTTTAC GGAATCCCGTAAGGCGTCGGCTGCTTCTCTGTTTTTGCATGTTTTTACAATTTCGGCCCGTCCGA TGTCGGCTCCTTCCAATTGTTTTGCAAAACAATTTAAAATTTGAGCCAGCAAGGTGTCTGCTGCT CCGGCTAGATTTCCAATATTTAAATTTTGCACAATCCTGTAAGATGTCGGGTGCTTCTCAGTTTT TACAAAGTTTTTTCTCAAATACGGCCCGCGCAGTGTCGGCTGCCACCTCGTATGTTTCATCAAAC TTGAACGATTCGAGCCCGTTAGCTGCCCGCTGCGTCTTTTTTTTTCTCAAAATTCCAGCCCGTAA CTTTTCGGTTGCTGAAATAAACAAAATTTTTACGAAATTTTAACC Found at i:807594 original size:6 final size:6 Alignment explanation
Indices: 807585--807601 Score: 34 Period size: 6 Copynumber: 2.8 Consensus size: 6 807575 AGATTCCCGT 807585 CTCTCC CTCTCC CTCTC 1 CTCTCC CTCTCC CTCTC 807602 TCTTCATTGG Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 11 1.00 ACGTcount: A:0.00, C:0.65, G:0.00, T:0.35 Consensus pattern (6 bp): CTCTCC Left flanking sequence: Indices 807085 -- 807584 CCGAGAAGGATATAAACTGGGGAACTCTACTTAGCCCGTAAGGTGTCGGCTGCTACTATTTTATC ACATCTCAATTTTTACGGAATCCCGTAAGGCGTCGGCTGCTTCTCTGTTTTTGCATGTTTTTACA ATTTCGGCCCGTCCGATGTCGGCTCCTTCCAATTGTTTTGCAAAACAATTTAAAATTTGAGCCAG CAAGGTGTCTGCTGCTCCGGCTAGATTTCCAATATTTAAATTTTGCACAATCCTGTAAGATGTCG GGTGCTTCTCAGTTTTTACAAAGTTTTTTCTCAAATACGGCCCGCGCAGTGTCGGCTGCCACCTC GTATGTTTCATCAAACTTGAACGATTCGAGCCCGTTAGCTGCCCGCTGCGTCTTTTTTTTTCTCA AAATTCCAGCCCGTAACTTTTCGGTTGCTGAAATAAACAAAATTTTTACGAAATTTTAACCCTTG AAGTGTCGGCTGCAAATTAAGATACCTACTCATTCAGATTCCCGT Right flanking sequence: Indices 807602 -- 808101 TCTTCATTGGGGAGTCCTTCTCCCGAGAGAAAATGAATAAAACTGTCAATTTGAATAAATGCACA CAGCGGGAGATGTTTTTCTGTGAAGACTCCACCGTCTTCTTCGTCTTCTGCCTATTAAGCGATGA TCCTTTCACTTAACTGTCGTTCCCTCCCCCTCTCCACATACCAATAAACCTTGCCAAAAGGTCGA GTATGCTTTGCCCGCCATCGTGCCGGAGGTCTTTTTTCTAGACTATGATGTTTTTTTTTGGAAAA ACATTTTTCTATGGATCGATGCACCATGATGCCGAGTTGCCGAGTTTTCAATTTAATCAATTTTG AGATTTCAATTTTAGTCCCTTGTACATATTAATTTTTTTGGAATTAACATTAAAATTTGATAAAC TGTAGCTACAACTATTTATTTTTGTGCCAAATTATACTATCCAATTTGACTTGTCTCTTGATGCA CCATGACTAACTTTCTAAGATCTCATATTTTGGCCTAAAATTATT Found at