TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_II Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 15279311 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:10504471 original size:6 final size:6 Alignment explanation
Indices: 10504460--10504472 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10504450 GAATTTTTGA 10504460 TATAAT TATAAT T 1 TATAAT TATAAT T 10504473 CGAATATGCA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54 Consensus pattern (6 bp): TATAAT Left flanking sequence: Indices 10503960 -- 10504459 AAAATATGCACATCTGTAATTGATGCCAGCTTGAACAAAACTTATATCTATGTATATATTTACTT AATGTACAATAAACAACAGCTGAAACATTTGGTGCATAGCGGAAAAAAAAAGTTTGAACAAATTT CGCAATTCCTAACAAAGGCGGGGTGTCCGGTACCAGGCACACCAGCCATTAAACTTTTGAAATGA GCAATTACAATAGATAAATGATAGGTGATTACGGTAGGGACAATGAATTTACAAAATTGGTATTG ATATATTGGTATAGTTTATATGTCAGCCTATAAAATTTGGGTTATGATGGTGTGTGATAGCAGCC ATTATTTTAAAGATAGAGCTAGTGGAGGGGATATTGTCTATATAATGTTGATTTTTTTTCAAATT GTAACATTTTCAGTCATAGTTTTGGTAAATTACCGAACAATAAAAATGCTTATATTTCGAGAAAA TTAGAGCAATTCTTATGTTTTAAATGCTCGCATACGAATTTTTGA Right flanking sequence: Indices 10504473 -- 10504972 CGAATATGCAAAAAAGTATCAAAAAAAATTATAGAGAAATTTTTCTATGATATTTGGTCGCATTG GTTTTAAACAGAATCCTAAGTGGTTACTCCCCCTTTAAATTTTATTTTGAAATTAAAACTGAAAA TTCTTCAGAGTGACTCATCTAACCATTTCAAAAACATTTTTTTTTAAAGGCCAAAAAACAGCAAA ATCCCGTACCAACTCGTAAACCAACAATGACCTTTCTTGACCTACAATCCTCTGTCTCCTCTTCC CCCAATTGTCTTCCATATTTCTCTATGTCTCTAATACCTGTAGCGAGTACTAAGGACACTCTCTC TCCTCCCACTTCCCCCCGTACAAAAACGGAGAGCGTCATCGTTCATATTTATAAGTATACAATAA ATAGAATAAAAAACTGCGAGAGCCAGATGGGAGGAAACGTTTCTCTCGTCTGTCCACATACACTC GATTCTTCGAAAAAAGAGAGTCAAATGGACATCCGAGTGTTCCCT Found at i:10510301 original size:2 final size:2 Alignment explanation
Indices: 10510294--10510307 Score: 28 Period size: 2 Copynumber: 7.0 Consensus size: 2 10510284 ATCAGCACTA 10510294 TC TC TC TC TC TC TC 1 TC TC TC TC TC TC TC 10510308 ACTTGATGCC Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 12 1.00 ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50 Consensus pattern (2 bp): TC Left flanking sequence: Indices 10509794 -- 10510293 CGACGGGACGAAAAGGAGTTCGTTGTCATGGATACTAGGAACAAATAGCAGCTGAAGAGAGGGGT CTTGCAATTAAAGTGGGAAGTGGGTGGTGGTGGGGTAGTACAGAAATATTTAGAAACTTGGAAAG AGTCTGGGGCTAAGCGCACTTCCGCTACTTGTAAATTAAAGTAAAACTCAATACATATACACCGG GAATCTAAAATTTGCTGAAACAGTATTCTGAGAACTTGTCCTTATTCCTCTCCATATAGACGTTC CATGGTCTATTACGGTACCTTGAGTTGCCAACTATTTCGAAAATTACCGCAATTCCTGTGCACGC ACCCAAACACGTTCCAGTTTTTGTTCAAAGTGGCATAGCTCGTTTCTTTGTTTCACAACCCCTCA ACTAACAAATTTCGTAATGAATGTGCTCTTTCTCTTGGCAAGTCACCGCCTGAAGCACACTCGTA ATCCTTCTCTGAAGGTATGTAAAACGTGTACGAGCATCAGCACTA Right flanking sequence: Indices 10510308 -- 10510807 ACTTGATGCCGCGCGGCACAAGGGTGCGGAAGAGAGGAGACTGAGAAAAAAAACGTGTAGAAATG TCAACAAATGAGCCAGTTTTGTCAGAGCTCGCCGGAGAGAAATAGTACACAAAATGAGAAGACAC AGAGTGTACTGTAGTAGAGAAGAGGCGGAGGATTGCGGCGATATGTGGAGGTGCCTCCCTATTTC GCCTCCACTTGTTTCCGTCACTTTCACATTTATTCATTCTTTTCTGAGCCGTTTTTCCACTCCAC CCATTTATATTTTTAAAGTGTTCACACGTTCCTCGTTCCGTTTACCATGTCGAATTCTAGATGGG ATGGATATCGTAAGTTTATTTTAAAACAAAATTTATAATTATTTCTGAAAATGCATATTTTTGTT CTGATTAGAATTCAGTTTATTAATTTAATTTTTACAATTTGAAAACGTTCTGATTTGCAATTCTT AATTCTTGGAAAATTGTTTCCTTTATAAAATAGAACAGTTTCGTG Found at i:10513720 original size:6 final size:6 Alignment explanation
Indices: 10513709--10513722 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 10513699 CCGACTCTAT 10513709 TACATA TACATA TA 1 TACATA TACATA TA 10513723 TGTGGTAGCG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36 Consensus pattern (6 bp): TACATA Left flanking sequence: Indices 10513209 -- 10513708 GTGAACTTGCAAGAACACGCGGAGCTTGGGAATTTTTTAGGAGTCAGGAAAAAATGCAAGTGCAG ATAATACACAGATAATCAATAACTAATGAACCACTTTATCTGAAATTGGAAGTTATTTTTAAGGC CGACGACTATTAAAAAAGGGGAGTTTCTGGCGCTAAAATACCGAATTTCATGTTTTTGGATTTTC AAAAATTCTTTATTACGGTTCAAATTTTTTTAGGAGATTTAGCTAAATTTAGGTAACGAGGAAAA CTTTTCAACTTTCATGTAGACTTCCAAAAGCAACCTATGTCATTTCATAGAGGACTAAAAAATTC AGAAGCAGAGGAGCACTTTGAACGGGAAAAATATGTTTTTCAGTGTTTAAAAAACTACTTTAGAG TCCCATAAAGCATCTTCAAAATGGATTTGTACACTTTTCACAATTTCGAAACTGTCTTGTAAGGT TCTGAAAGCGTCAGAATCTGCCGGTTTACATTATACCGACTCTAT Right flanking sequence: Indices 10513723 -- 10514222 TGTGGTAGCGTTTTCAAAAAAACGAAAAAATTTATTTCGTTAGTCTTGTTCGTTTTGGATAAATA AAAAAGAAATGTACATATTGCAAATAAAACAATGTCAAGAGATCACTGATTGAAACAAAAAAAAA CAAAAAGACACCGAGTCCGGATCACAATTTCCCCGCAGATGCAGAACTCGTCACGAATCACCGAA AACTTGAAAATATTTGGAAAGAAGAATGAGAGAAATGAGAATGTACAAAAATGGTCTTGGCAAGA AAAGCCACGTCATGCCAGGGGGTCTCAAGAAGAGGTCAAATAAAATTAAAGACTGATTACGGTCA TCATTGAAGATTTGTGCATTTTCACGTCAGGTATGGTGTATACAGAATGGGGTGGTCGTGATGGT GGCGATGAAGAAGAAGAAGATGTTGATGGTTGTTGGGAAGAGTTTTTCAGCGCATCTTCGTAGCT CGGAAGATCTTTTTCGCTGGCTGTGGCACGCACACAAGCGTTGTA Found at i:10514127 original size:3 final size:3 Alignment explanation
Indices: 10514119--10514132 Score: 28 Period size: 3 Copynumber: 4.7 Consensus size: 3 10514109 TGGTGGCGAT 10514119 GAA GAA GAA GAA GA 1 GAA GAA GAA GAA GA 10514133 TGTTGATGGT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 11 1.00 ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00 Consensus pattern (3 bp): GAA Left flanking sequence: Indices 10513619 -- 10514118 ATGGATTTGTACACTTTTCACAATTTCGAAACTGTCTTGTAAGGTTCTGAAAGCGTCAGAATCTG CCGGTTTACATTATACCGACTCTATTACATATACATATATGTGGTAGCGTTTTCAAAAAAACGAA AAAATTTATTTCGTTAGTCTTGTTCGTTTTGGATAAATAAAAAAGAAATGTACATATTGCAAATA AAACAATGTCAAGAGATCACTGATTGAAACAAAAAAAAACAAAAAGACACCGAGTCCGGATCACA ATTTCCCCGCAGATGCAGAACTCGTCACGAATCACCGAAAACTTGAAAATATTTGGAAAGAAGAA TGAGAGAAATGAGAATGTACAAAAATGGTCTTGGCAAGAAAAGCCACGTCATGCCAGGGGGTCTC AAGAAGAGGTCAAATAAAATTAAAGACTGATTACGGTCATCATTGAAGATTTGTGCATTTTCACG TCAGGTATGGTGTATACAGAATGGGGTGGTCGTGATGGTGGCGAT Right flanking sequence: Indices 10514133 -- 10514632 TGTTGATGGTTGTTGGGAAGAGTTTTTCAGCGCATCTTCGTAGCTCGGAAGATCTTTTTCGCTGG CTGTGGCACGCACACAAGCGTTGTACGATGGAGGAGACTGAAAAAAAATACTAAACATATATATA TTGAAAATATGTTTTGTACTATTCAAAAGGTTTCGCAAATAAAGTTTTCAGAAAATTCGGCAAAT TACCGAATTTTCCATTTGCCGCAAAAACATTTTGGCCAAAAATTTATAGGGGATCAGTTTACTTT TGATATTTTTTAACAATATTTTTTGATAATTCTAAAAAGAACTTCATAAAATGGGGATTCCATTT AGCAGTTTACAAATTTAGTTTTTTAAATTTTCCAAAAAAAAATTGCAAAGTCAAAAATGGCATAA TTTATAACTCACTTTCTCCAAATTTGATTCATCGTTCACCACTGCCGGACAGCAAATCTTCTGCC ATGCCGAGAAAAACACTCTGAAATTCAGAAGTTTATAATTGTAGT Found at i:10516538 original size:2 final size:2 Alignment explanation
Indices: 10516531--10516543 Score: 26 Period size: 2 Copynumber: 6.5 Consensus size: 2 10516521 TGTGTTGTTG 10516531 TC TC TC TC TC TC T 1 TC TC TC TC TC TC T 10516544 TTTGTTTTTG Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 11 1.00 ACGTcount: A:0.00, C:0.46, G:0.00, T:0.54 Consensus pattern (2 bp): TC Left flanking sequence: Indices 10516031 -- 10516530 TCTACGCTCTACAAAATCCAATTGAAGTGTAGGGTAATAGTGCTTCTACAGAAAATAGGTGGTAG GCAGGCAAGTAGGGGAAGGCAGTATTAAAAACCGATTTCTTAGAAAACATACAGGCCCTATAACT TATAGTTTTGACAAGATTTTTGTGAGTTTTGCAAGTGACGAAAATTTTCAATTTTTTCTCAGATT GATTCGAAATCATTAACCAAACCTACCGAATCATATTGCTGAATAACAGGAGTATAAGTTAGGAA AATCATTTTCTTTCTTGGTTACTTGTTGACCAATGGAAGAAGACAATGAGTTCTTCTGGCGATTT TGAATTTAAAACGGTCAAAAAAAATCGGAAGAATGGGTGGGTTGGTAGGTGACAGACACAATAAG AGATATAAATGAGAAGGCGAATGGGTTAGGAAGAGAAACTGGGAGAAAAAAATAAGAAAAAGAGA GAATAGCGAGACACTTAAAACGTGATTTTTACTATTGTGTTGTTG Right flanking sequence: Indices 10516544 -- 10517043 TTTGTTTTTGTGACACTCTGATTTCCTACTTCATCCTTTCATTTATTGTGTTGGTCACTTTACCA ACTGATAACGAATCTTTTTTTGAATTTTGGGAGTGCCCAAAAAAGGTGGAGGAGCTTTGGGTGCG CCACCGGCTTCAGAGATTTTTAGAATTGTATTTAGAAGTTATTCTCAATGCCAAGCTTAAATTTA TTTATAATTTTTTATGTGACAGAAAAATTTTAAAAATTCAAAGAAAAATTGAACAAGCTTAGGCA CCTAATTTTGTGACTACAAAGGCTTCCATTTTTTTTAAAGTTTTCAGAACTGTTTCCAAAAATAT ATGTTTCTGGAGGCATGTGATTAGAGTAGTTCGGTTTGTAAATTGATAGGTAAGTTAAAAGTATT GTAAAGACTAAACTTGAAATTTTACTGCAGCAAACTTTATTCCTTAACATTTTTTTCCTAGTTAC TGGTTTTGAAGAGAGTTTACAAAATAATTATTTCATTATTTTTTC Found at i:10518119 original size:5 final size:5 Alignment explanation
Indices: 10518109--10518121 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 10518099 ACTTTTCGGA 10518109 AACAT AACAT AAC 1 AACAT AACAT AAC 10518122 CGGGTCCTTC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.62, C:0.23, G:0.00, T:0.15 Consensus pattern (5 bp): AACAT Left flanking sequence: Indices 10517609 -- 10518108 AAACATTTTTAAACACAATGCAAAAGCTGGGATTTATTGAAGATTAGAAAACATATTATTTCAAA TCGGTAGAGATTGGTTTTTGAATTAAAAATAAATGCTCAAATAATTACAAATGTAAAAATTCAAA AAAAAAATCAAAATCTCACAGAAAATTGCGAATTTAAAAAAAAGGAAAGCTCATGATGTTTTCTT AATTTTTGCAGTTGGAAAAATCTCGTAAATTTCAATCTGGAAAAAGTTGACATCTTGTCGGTAGA ATTTTTAAAACGGAGGCTCGTTAGTTTTTTTTAATTGATGTTTTTTTAACTCACAAAAGTCATTG ATTAAACTCAAAATGATCTGATGGAAACCGGGTTCAGGACTACCCCCGGCGCCCACCTTCCAACA TTATTTATACATATTCCGGGGGAATTATGACACGTGACTTGACGGCCAAAAATACGCAAAAACAT GGGAAACACCGTATTGGAATACATTAGAGTTTGACACTTTTCGGA Right flanking sequence: Indices 10518122 -- 10518621 CGGGTCCTTCGATCCGATTATATGTGCATATACGTGTGACTGTTTGGAACAAATTGAGAAATTGA AATAGAAGAAATGAAACTTTTAGAAAATTGAGAATGAAGAATAATTGAAGGGGGTGTAGAGAAAC TAGTAGCAATGCAAATAATAGAACGTATTAGACAGATGATTGAACGTTCCAGAATTTATTTAAAA AAATAAGATTTTAAACAAATAAACTTGAGAGATTCATATAGTTTTAGAAGATCAATAATGAAAGT TACGCGGGAAAAAATCAATTGTTTCAGGTGTTTCCTCATCTTTTCAAAGTTCTAATAAAATATGT CATAGCAAATTTTTAAATCCCAAAATTTAGATATTTTAAAGGATATAATTTTTTTTGTAGTTTAA CCTAAATTTTTACATTGGTTTCTGCAAAGACATATAAATACTATCCAAGCTACATGCATTGATCA TGCGGAACTATGGGTAATTATTCTTCACATAAACATTTGCATTAA Found at i:10521897 original size:6 final size:6 Alignment explanation
Indices: 10521886--10521898 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10521876 CTGGTTGGTA 10521886 GTCGGC GTCGGC G 1 GTCGGC GTCGGC G 10521899 AACTCAGAAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.31, G:0.54, T:0.15 Consensus pattern (6 bp): GTCGGC Left flanking sequence: Indices 10521386 -- 10521885 AAGTTTCAGGCAGGCTCTAGCCATGAACGATGTCTGCAGTGAAAATTAGATTACTGTACTACCGC TCTACATTGAAATTTAAAATAATTTTAAAGCTTAATTGTCCGATAAAAATTCCCTTGCTTCCAAA TCTTTGAAAATTGAAACTTACATAGGGAAATATCATTGACATGGAGCAGGATAGATTTGCAGGAA TTTCAGCTATAACTCAACTGAAAGACTGTTTTGTATCTTTTTTCCTGCATTTTTATATACCATTT TCTCGATGGTCTTCCAAAATCCAGACAAGAAGGAAACAAAAAACACGAAAAACATATGGAAATCG ATTTATTATAATAATACCCGATGAATATGTACAATGTTGATCTGTAGAGTTTTTGAATTTGAAGC GACGAAAGTTCTGGAGGAAGAGAATTGTTTTGTATACCCGGAAAAACAAGGGTAGAAGTGAGGAG CAAAATTTGAAGAGTCAACGACTAAAAATCGAGGTCTGGTTGGTA Right flanking sequence: Indices 10521899 -- 10522398 AACTCAGAATTGTGCTTCGTTTTTGATGGAATTTCTCTGAAAATAGTTAATTTGGATTTAAATTG ATAATTTCTCTAAAATGTCTGATTCAATCTCTGAAATGGACTGAGATACTCGTTGTTAATCTAGT TTCAAGACATAGTGCATCGACAGTTTTTACCTTTGAGCACCAGTAGCTTTTATTAAAAAACAGTC AACTAATAAAGATTTATAATATTTTAGGATATAACTTTATAGTTGAGCATTTGTTAGAAGTGAGT ACTACCTAAATGTGTTTGAAATTTTTCTCATTAAATTTTATTTTTCAAATTTTCAGAGGCGAACG TGAACCGCGCACCAGAAATTAAAAATATATGTACAGAGTTTACTTTTTTGCAAGGGCGTTAAAAA ATTTAGCCAACTGGTTTTAATTTGGAGATTTTTTTTAAAATAAAATAATTGAACTTGGAGAAGCT AAGATTACCGTATTTCTTCTATTAATATGGCTGCAATACTATTTT Found at i:10522334 original size:5 final size:5 Alignment explanation
Indices: 10522324--10522336 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 10522314 AGATTTTTTT 10522324 TAAAA TAAAA TAA 1 TAAAA TAAAA TAA 10522337 TTGAACTTGG Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23 Consensus pattern (5 bp): TAAAA Left flanking sequence: Indices 10521824 -- 10522323 AGGGTAGAAGTGAGGAGCAAAATTTGAAGAGTCAACGACTAAAAATCGAGGTCTGGTTGGTAGTC GGCGTCGGCGAACTCAGAATTGTGCTTCGTTTTTGATGGAATTTCTCTGAAAATAGTTAATTTGG ATTTAAATTGATAATTTCTCTAAAATGTCTGATTCAATCTCTGAAATGGACTGAGATACTCGTTG TTAATCTAGTTTCAAGACATAGTGCATCGACAGTTTTTACCTTTGAGCACCAGTAGCTTTTATTA AAAAACAGTCAACTAATAAAGATTTATAATATTTTAGGATATAACTTTATAGTTGAGCATTTGTT AGAAGTGAGTACTACCTAAATGTGTTTGAAATTTTTCTCATTAAATTTTATTTTTCAAATTTTCA GAGGCGAACGTGAACCGCGCACCAGAAATTAAAAATATATGTACAGAGTTTACTTTTTTGCAAGG GCGTTAAAAAATTTAGCCAACTGGTTTTAATTTGGAGATTTTTTT Right flanking sequence: Indices 10522337 -- 10522836 TTGAACTTGGAGAAGCTAAGATTACCGTATTTCTTCTATTAATATGGCTGCAATACTATTTTTCG ATGCTCTTCCCGCTTGCAATACTAATAGGGAGTGCAAGACTATTAGGGAGTGCAATACTAATTTT CAGAACATTTTTCTGACTTTGAGCTTACTATTTTTTTTCTGAAAAACCCGAACCTTGTGTGAAAA TTCAGAAAATTTGATTGTAATTGCAACAAAAAGGTGTAATAACTTCAATTTCATAGAAATTTTTC CAAAAATTGTTGCACAGTAGGCAAAAAATGTTGTTAAAATCTCAAAATTAGTGAGGTGATTTTGT ACCAAAAAAAGTAGACGCAAGACTATTAGGGAGTGCAACACTAATTTTCGGAAGGTGTTCAAGGA GCAATACTAATAGGGAGGCCATATTAATAGAAGAAATACGGTAATTAAGAAATTCCACTTACGGC CGAACTTTTGCAAAATCCATAATTGGTACATATTTTGGAGTCATT Found at i:10524947 original size:6 final size:6 Alignment explanation
Indices: 10524936--10524948 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10524926 TAAAAGTGAT 10524936 TTAAAA TTAAAA T 1 TTAAAA TTAAAA T 10524949 AATAATTTTG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38 Consensus pattern (6 bp): TTAAAA Left flanking sequence: Indices 10524436 -- 10524935 GAAGGTAAGTGTTTGATAACCCGACGCAAAAATGAGCACAATAAGCTCAAAAAGCAAAGAAAAAG CACATTGCGGTAGAAAAAAACGAGAGAGAGAAAAGACAAACATTTGGGTCATGAGAGGAAGAGGG TGCCATTTTGGATACGAGGTGTCATGTTACTATGTTTTTAACTTTTTATTGCAAGAAATTGGGCA AAAAATGAATTGCATATCAGGGAAGTGCGGTAAACGAGCTTTCCGGCAATATTTCGGAGTGTTTT TTGAGAACAAAAATATATTGTTTTCATTTTATGTAAGCTTGCATCTTTTTTCATGAAGTTTTTAG ATACAATTTTGAAATTGATATCGGCAGTTGCTGATGTCGCCAAAAAACGGACTATTGTCGAGGTT GCCGAATGTTAAAATGTTTGGCAACCAATGATCTTTATTTGAATTTTTTTTAAATATCTATTATA TGATCAGAAATGGTCAGAATTCTTAATTATGTGGGTAAAAGTGAT Right flanking sequence: Indices 10524949 -- 10525448 AATAATTTTGTAATCAGTGACTGCTAAAAATTAATAAATTTTACACAAAACTTGGGCAAGATTTG GGAGGGGAGAAGAAATTTCATCAAATATTTAAAATAATCTTGCCTGAACTAGGGCGAATTTTTTT TTGAAACGATCATATTTTGAAATTTTCGAGTTAAAAAAAATAAATAAACATCAGGACAGTATTTC CAACGTCATTCTCTGATCCTTTCGTAGACGTTTCGAAGGCCATGACTTCTCTATGTCTCTTCATC TTTAATAGTATTTTCAGAGAGACCGGTCGGATGACAATTTTCCTATGTATTGTGTCTTTCTCGCA CTGTCTAATCACTTAAATGGAGATGAAAAAGAGAAGAAAATGCAAAAAAAAATGAAGGAAGAAGA TCGGAAAATTGGTGCGGTCTCTGTTGTTTTTACAACGAATTTCAAATTGGAACATCTGATTAATT AGGGTTTAGAGAAGGATGACCAGAAATGAGATTTCTTTGTTATAG Found at i:10530347 original size:3 final size:3 Alignment explanation
Indices: 10530341--10530356 Score: 32 Period size: 3 Copynumber: 5.3 Consensus size: 3 10530331 CATGTCATCA 10530341 TCG TCG TCG TCG TCG T 1 TCG TCG TCG TCG TCG T 10530357 TACCCACATC Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 13 1.00 ACGTcount: A:0.00, C:0.31, G:0.31, T:0.38 Consensus pattern (3 bp): TCG Left flanking sequence: Indices 10529841 -- 10530340 CAATTAATTTTCATTCTGGGAAAAATATAAATCAGCTTACAATATTTAATTTCTAGTAGTTTACA CGTACCTTCTAATAATTGTTTGATATTTTCTCTTTAAGCATACAATCAGTGTGTTTTCTGTAGTT GATTATAAAAATAATATATACCAACTTGGCTCGGAGGTTTTGGAGGCAGCGTCCTGTAAAACTTT GACAGTTTACAACTTCCTGTCGAACTTTTGCAACTTTCCAACGACATTTTGATGTTAAAAAAATT ACCTAGCAACTGCCTATCAACAGCTTTTTTTTATATTTTACCGAGTTGTTGCCGAAAAGTTTCTC CTGAATCTCCTTTGCTTTGAGACAAAAAGTACTAGTTCTGTAGTAGACTCCAGAATCTCATATTC AACAACTCATTTTCAGGATACTGAGGCTATTCGATAGCCGCTGCCCTTCCGTCGATCTGGATTGG GAGCGTACCTCAACTTGTGTGCCTTCAGAAGGCATCATGTCATCA Right flanking sequence: Indices 10530357 -- 10530856 TACCCACATCATCTGCGTCAACAACGACTTCGTCGATCACATCAAGACCATCAGCATGTAAGTCC CGACGATCAGGACATCAGAAAAATTAGTAAAATTCTAGCACATCACTTGGAGTCCATACTTAGCT CGTCTTCATCTTCTCCATCAATTTTATCATCTCTTACAACTCAATCCACTTCATCAATACCCACC TCTTCATCATCATCATCACAACGTCAATCAACCAGCAATGCAGATCGCCCTGTGTAAGTCAATCA TTTTTATCGATTTCTGGTGATAAGGGAAAGTATTTATGAAATTTTTTAGTTCTCCCAAACCGATG CCGACACCAACGACTCTATCCGAGTGGCAATTGTTGGCTGTACTGAGCAAAGCGAATTTAGTTCA GTACTATGATGTTTTCATAGCACAAGGTAAGGATTCTTCTTTGTGAATTTTCTATTATAAGGTAA ATTTGTTTCAGGTGGCGACGATATCAATCAGATCATGGCATGCGA Found at i:10530563 original size:3 final size:3 Alignment explanation
Indices: 10530555--10530569 Score: 30 Period size: 3 Copynumber: 5.0 Consensus size: 3 10530545 ACCCACCTCT 10530555 TCA TCA TCA TCA TCA 1 TCA TCA TCA TCA TCA 10530570 CAACGTCAAT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 12 1.00 ACGTcount: A:0.33, C:0.33, G:0.00, T:0.33 Consensus pattern (3 bp): TCA Left flanking sequence: Indices 10530055 -- 10530554 TCGAACTTTTGCAACTTTCCAACGACATTTTGATGTTAAAAAAATTACCTAGCAACTGCCTATCA ACAGCTTTTTTTTATATTTTACCGAGTTGTTGCCGAAAAGTTTCTCCTGAATCTCCTTTGCTTTG AGACAAAAAGTACTAGTTCTGTAGTAGACTCCAGAATCTCATATTCAACAACTCATTTTCAGGAT ACTGAGGCTATTCGATAGCCGCTGCCCTTCCGTCGATCTGGATTGGGAGCGTACCTCAACTTGTG TGCCTTCAGAAGGCATCATGTCATCATCGTCGTCGTCGTCGTTACCCACATCATCTGCGTCAACA ACGACTTCGTCGATCACATCAAGACCATCAGCATGTAAGTCCCGACGATCAGGACATCAGAAAAA TTAGTAAAATTCTAGCACATCACTTGGAGTCCATACTTAGCTCGTCTTCATCTTCTCCATCAATT TTATCATCTCTTACAACTCAATCCACTTCATCAATACCCACCTCT Right flanking sequence: Indices 10530570 -- 10531069 CAACGTCAATCAACCAGCAATGCAGATCGCCCTGTGTAAGTCAATCATTTTTATCGATTTCTGGT GATAAGGGAAAGTATTTATGAAATTTTTTAGTTCTCCCAAACCGATGCCGACACCAACGACTCTA TCCGAGTGGCAATTGTTGGCTGTACTGAGCAAAGCGAATTTAGTTCAGTACTATGATGTTTTCAT AGCACAAGGTAAGGATTCTTCTTTGTGAATTTTCTATTATAAGGTAAATTTGTTTCAGGTGGCGA CGATATCAATCAGATCATGGCATGCGAGGAGAGAGAATTTCTGGAAATTATGAATCTTGTGGGAA TGCTTCCGAAGCCTCTTCATGTCCGGCGGATGCAGAGAGCACTTGCTGAGTATAGTCAGGATCAG ACTGCATTCAACCTGGCAGCTCTTCAACAAATCGGTCCACCACCACCACTGAACTACACACCTGC GGGTACTGATCCGATGGCTCTTCTGCTACCCGGAATCGCCGCTGC Found at i:10531004 original size:3 final size:3 Alignment explanation
Indices: 10530996--10531008 Score: 26 Period size: 3 Copynumber: 4.3 Consensus size: 3 10530986 ACAAATCGGT 10530996 CCA CCA CCA CCA C 1 CCA CCA CCA CCA C 10531009 TGAACTACAC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 10 1.00 ACGTcount: A:0.31, C:0.69, G:0.00, T:0.00 Consensus pattern (3 bp): CCA Left flanking sequence: Indices 10530496 -- 10530995 CTTCTCCATCAATTTTATCATCTCTTACAACTCAATCCACTTCATCAATACCCACCTCTTCATCA TCATCATCACAACGTCAATCAACCAGCAATGCAGATCGCCCTGTGTAAGTCAATCATTTTTATCG ATTTCTGGTGATAAGGGAAAGTATTTATGAAATTTTTTAGTTCTCCCAAACCGATGCCGACACCA ACGACTCTATCCGAGTGGCAATTGTTGGCTGTACTGAGCAAAGCGAATTTAGTTCAGTACTATGA TGTTTTCATAGCACAAGGTAAGGATTCTTCTTTGTGAATTTTCTATTATAAGGTAAATTTGTTTC AGGTGGCGACGATATCAATCAGATCATGGCATGCGAGGAGAGAGAATTTCTGGAAATTATGAATC TTGTGGGAATGCTTCCGAAGCCTCTTCATGTCCGGCGGATGCAGAGAGCACTTGCTGAGTATAGT CAGGATCAGACTGCATTCAACCTGGCAGCTCTTCAACAAATCGGT Right flanking sequence: Indices 10531009 -- 10531508 TGAACTACACACCTGCGGGTACTGATCCGATGGCTCTTCTGCTACCCGGAATCGCCGCTGCCACG TCGCCGAAATTCCCGAGTCTCCGATTTTTGAGTCAGCTGTCGTCAGTTGCTGAAAAAGTTTCGAC ACCATCCGAAGCAGCAGACACGTCATCATCGTCTCCGTCACTGAATCTGAACACGACATCGTCGA ATTCGGTACCGTTGGGTTAGTCTTTGTCGCTGGGCGTTTGGTAGCACACGCATGTCCATAATGCA CAATTTTTGTTTTTAGTTCTTTATTTTAAGTTTTTGAGATATTTGTTATGAAATAGTAAAATAAT GGTTCACATTTTTGAGTTTTTTTTTGTTTTTTTCTAAATTGAACTAATTGTACCGCTTCAATTAC CAACATGTGTTACAAAGATCGAAATTAAGTTAGCACCGACTCCAAGGCTTCATCAATGCACTATA TTCAGCGCGTAGATTAGCATACTCAGTTTGTGTTATACTTGTGCT Found at i:10537345 original size:6 final size:6 Alignment explanation
Indices: 10537334--10537346 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10537324 TCATCGCTTT 10537334 ATTTCC ATTTCC A 1 ATTTCC ATTTCC A 10537347 GCAGTAGATG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.23, C:0.31, G:0.00, T:0.46 Consensus pattern (6 bp): ATTTCC Left flanking sequence: Indices 10536834 -- 10537333 TTTTTTAATTAATCTAAATAATTTTTTTTTTCCAAATTTTCCAGTTTTATGTTGAATTTTTAAAT TTTAGATTTAAAAAAATGAAAAATTTTAGTTTTTTTACCTGATTCTTGAAATAATTCCGATCCTT GGGATTCGGTGATTGGCCAGCTTTAACGATGAACGTGTGAAGCCAGAGGGAATCATTACGGAGCA ATGCAGCAGGAGTTGGGAAGTTTTTGTGAATTGTGTGACTGCCGTCCTAGAAAATACGAAGTTAA ATTAATTAAATCTAGAGAATTATCAAACTTCATTATCACCACTAATCCAATCATCATACTTCATT CCATTTCGCATCCAAATCAACTTTTCTGGTGCTGAATCGAATTGTCTGAATGGGAGATCCTGAAA TTGTTGGAAATTCCGATATTTTCAACTTTTTCTCCAAGTCAACTAACACTATCATCCATGTAAAC GTATAAATCAAAAATCTGATGATTTGGGAACATATTCATCGCTTT Right flanking sequence: Indices 10537347 -- 10537846 GCAGTAGATGCTGTCACATTTCCATCATTTCCAGGCGACGACGATGGCCGGAAGAATCCCTTCAA TTTTTTTGAATTCATTTTTCAAATTAAGATGTCCAGATCAACTTACAGAAACCATGGAAACTACG AAATAAATGGTGATTGCTTGCTTGATCATTCCCCAAATTCCGCCACCTTGCTGTGGTTCCGGAGC TGCTTCGGGAGCAGCTGCTGGTGCAACTGCGTCGGCCATTCTGTGAAGATTATGAGAGTGGTTAG AAAGTGGAAAAGTTGCAAAAGCAAAAAGTGGTGAAAATAAATTGAAAAGATAGTGGTTAGTGCGG TTAGAAACACTTAAATATTTTTTCCAAACGGATTTCAAAAAAATAGAAATTTATTAGATTATTTT AGATATTTTTACAGAATTTTCAGTTATTATACAGTTATTTCAATCATAATACAGAATATTTTACA GGAATTTGAAAGAAAAATACATAGAAAGAGATCATTAACGTGGTA Found at i:10538361 original size:4 final size:4 Alignment explanation
Indices: 10538352--10538367 Score: 32 Period size: 4 Copynumber: 4.0 Consensus size: 4 10538342 AATCCAGAAC 10538352 AATT AATT AATT AATT 1 AATT AATT AATT AATT 10538368 GACCGAGAGG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 12 1.00 ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50 Consensus pattern (4 bp): AATT Left flanking sequence: Indices 10537852 -- 10538351 AGTCCGTGCGATTGTTTGTAGTTTACATAATCCTGAAAATTAGAGAAATTGTATATAAAAAATAT TTTGAATTATTTCGGACAATTTGTGCATTTAATTTTTGATAGAAAACACGAATAATCATGAGAAA AATCGAAAAATTGCATAAAATCCAGAAAAAATTAATTTACTCATTATCCGAGAGGAGTACATGGC CGATAATTATTTCTCGGCCGTGTACTCCTCTCGGGCAATTAATGAATTAATTTTTTTGGATTTTA GGCAATTTTTCGTGTTTTCTCATGATTTTGCTTGATTTTTCGAATTTTTTTGTTTTCGAACAAAT ATAACATTGCGTTTTACATTAAATAGCAGACCAATAACGCTTTAAAACCGTCATAACTTCTGTTA TTTTGATGAAAACTATCGAAAATACGAAAATATGTTTAAATTTTTTAATTTCTAATAGAAAAACA CAAATACTATCATGAGGAAATGCAAAATCGCTTAAAATCCAGAAC Right flanking sequence: Indices 10538368 -- 10538867 GACCGAGAGGAGTACACGCCGGATAATTATATTCACCTTATAATCCAGAACAAGTTTGGAGCTTT GGAAGCGAACAATTCGAAGTGCTGACCGAAGAGCATCATTAATATGTCCTCCGTATCCACTTTTT CTTATTAAATGATCAATTGTCTCCACATGATTCCATCCTTGTTCTTGAGCTACTTCCGGCAAGAA AACGGCACTCCGATTGCGATGACCATCGTCGAAATTCATTCGAACTCCATGACGACCGATTGTCC AGTCACGAAAATTATGAATTGGCTCGAAGTTTATTAGAAGAGAAACCTACAAACTTTCATTTAAA TGCAATTTAAAAGTGAAAATACTCACTCCGCACTGCAAACTTGGAACTTCTTCCCGGCTAATTGG CTTGAATCGTGAATCATGGAAAGCGCTGGTCTTCGCATATTCGTTTAACCCCTCACCCAATCTGT AATAAATTGGATTGTTGAATAATGTTTTAAATAGTGAAAAACTCT Found at i:10539386 original size:6 final size:6 Alignment explanation
Indices: 10539375--10539387 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10539365 AATCAATATT 10539375 AAAACA AAAACA A 1 AAAACA AAAACA A 10539388 CAGAAAAAGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.85, C:0.15, G:0.00, T:0.00 Consensus pattern (6 bp): AAAACA Left flanking sequence: Indices 10538875 -- 10539374 ATCAGAGAAAGTTCCAATGCATCCGCGTAAATCGTGTTGATGTCCCTTCTTCCATGTGACAAATA GTGGTCTGGAAAAAACGAATTTTTATTTGAGAATTGATTAAACTTCGATTTTTGATTCGTACTAT TTAGAGGTGGTCGGTCGGCAATTATTTTCTGCAGTTCTCATTTGTTTTATCAGAAATTAATGTTA AAATATAGAAATTAACTTGATTCATTAACGAAATAACGGGGATTTTTCTGAAATCTTGCTTACAA TTTTACATTAGGGATCTCTTTTGGCACGGGAGGTTCCTTCTCTCGATTCAATTGGGCGTTGATGA CGTCAAAGCAGTAAACTGCCATTTGGATGTTAGCGGACGTCATCTGGAAGTATATTTGAAAATTT TTAAATATAAATTAAATTTATAAAAATATTTTTCAGGAATTCAACGGACCAATTGACCGATTATT GATATTTGAAAATAGGTTAATTTTGAAGTTTCTTTAATCAATATT Right flanking sequence: Indices 10539388 -- 10539887 CAGAAAAAGATCAACAGCAACACCAATAACAATGTAACAAATAGGGAAAAGCAAGAATAAAATTA AAAAATCTATTTTTCGCTATCAACAATCTCCTTGGCAACAAATTCGTACATTTGTTTATTGATTT CCTTGAGCTTCTCATTTTCAGCTTTCAAAGCATCAAATTTCTTCTGAAGCGAGGAATTGACTTCT TCTTCGTCATCAATAACAATCGGTTCTACTTGTTTCTTCTCAATAACTGCTGCTTCAAAATCATT TTTCTTTTGATTCTTCCTATTCTTTTTATTCTTTTTTCCACTTTTTCTTCTCTGATTTCCAACTT CTGGTGCATCATCTTCATCATCTCCAAGAGTAATGATATTTTTAATTGTATTTTCTGCTGCTTTT TCTGCTTTTGCAGCTTCATTTCTAGCAGGTCCTTCGGCGTCCCATTGTAATTGTGCAGATGATTT GCTTCCAGATTCCAACAAAAGTTGATCAATAGTTTCTTCAATGAC Found at i:10541522 original size:6 final size:6 Alignment explanation
Indices: 10541511--10541523 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10541501 AAAACGGGAA 10541511 TTCCCG TTCCCG T 1 TTCCCG TTCCCG T 10541524 GAAAATTTTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.46, G:0.15, T:0.38 Consensus pattern (6 bp): TTCCCG Left flanking sequence: Indices 10541011 -- 10541510 TAGTGCGCATCGATCACTGATAGCAATTCTCCAGTAGACAGAAGCCAGCAATAAAGTTGTCTTTT GATGCTCATGAACACAAAATGACCGGAATTATCACTGACGATTGCGGAAACCGGGCCAGGAAGAA CACATTTTTGATGAAATCTATCTTTTGGGTGTACAGCAAGTACGTGGACGAGTGGTCGCTCCTTT GTTGTAATCACGACGTGTTCACCGTCATGACCTGAAAATTAAATCAATTTTCTAATTTAGCGAGA CTAAATTAATTTTACCCAGCGGTTCAACAAGTCCAGTTGATGCTCCTTGTAATTCTGATCCCTTA TAACTCCATGACGAAACACCGGTTCTCGGATCAATAATAATTGTAGAATGTGGATCAGGACTGCC ACTGCTCACCAGAAGCATCTGAAATTGTTAATTTACAATTTTTATTGATTTTCACTCGCTCACAA GGGTGTCAATGTCCCGTAAAAATTACAAAAATGGGAAAACGGGAA Right flanking sequence: Indices 10541524 -- 10542023 GAAAATTTTAAAAACGGGAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAAAACG GGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAAC GGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAA CGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAACACCCCAA AAACGGGACAACGGGAAAAACGGGAAACGGGAATTGACACCCTTGCTCGCTAACAAACCTCCAGT GGCTGTGTGCCCGCAATGCGGCTTGTATCGACACCCAGATAAGCCATACCAAAAGTAGCTGAAAT ATAGAAAAACTTTAGATTTTATAACAAAAGTTATTTAAAAGTTTTAAAAGGGGAGAAAAAGAAAA AAATGATGAGAAAAAAAGCTTGGACAACTTGCGCGTAGAATTTGG Found at i:10541563 original size:6 final size:6 Alignment explanation
Indices: 10541552--10541564 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10541542 AAAACGGGAA 10541552 TTCCCG TTCCCG T 1 TTCCCG TTCCCG T 10541565 GAAAATTTTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.46, G:0.15, T:0.38 Consensus pattern (6 bp): TTCCCG Left flanking sequence: Indices 10541052 -- 10541551 AAGCCAGCAATAAAGTTGTCTTTTGATGCTCATGAACACAAAATGACCGGAATTATCACTGACGA TTGCGGAAACCGGGCCAGGAAGAACACATTTTTGATGAAATCTATCTTTTGGGTGTACAGCAAGT ACGTGGACGAGTGGTCGCTCCTTTGTTGTAATCACGACGTGTTCACCGTCATGACCTGAAAATTA AATCAATTTTCTAATTTAGCGAGACTAAATTAATTTTACCCAGCGGTTCAACAAGTCCAGTTGAT GCTCCTTGTAATTCTGATCCCTTATAACTCCATGACGAAACACCGGTTCTCGGATCAATAATAAT TGTAGAATGTGGATCAGGACTGCCACTGCTCACCAGAAGCATCTGAAATTGTTAATTTACAATTT TTATTGATTTTCACTCGCTCACAAGGGTGTCAATGTCCCGTAAAAATTACAAAAATGGGAAAACG GGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAAAACGGGAA Right flanking sequence: Indices 10541565 -- 10542064 GAAAATTTTAAAAACGGGAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAATTCC CGTTCCCGTGAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAATTC CCGTTCCCGTGAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAATT CCCGTTCCCGTGAAAACACCCCAAAAACGGGACAACGGGAAAAACGGGAAACGGGAATTGACACC CTTGCTCGCTAACAAACCTCCAGTGGCTGTGTGCCCGCAATGCGGCTTGTATCGACACCCAGATA AGCCATACCAAAAGTAGCTGAAATATAGAAAAACTTTAGATTTTATAACAAAAGTTATTTAAAAG TTTTAAAAGGGGAGAAAAAGAAAAAAATGATGAGAAAAAAAGCTTGGACAACTTGCGCGTAGAAT TTGGCGCCTAGTCCGCAGTCTAAGTCATCGGTGTTTGCAGACGTA Found at i:10541604 original size:6 final size:6 Alignment explanation
Indices: 10541593--10541605 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10541583 AAAACGGGAA 10541593 TTCCCG TTCCCG T 1 TTCCCG TTCCCG T 10541606 GAAAATTTTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.46, G:0.15, T:0.38 Consensus pattern (6 bp): TTCCCG Left flanking sequence: Indices 10541093 -- 10541592 AATGACCGGAATTATCACTGACGATTGCGGAAACCGGGCCAGGAAGAACACATTTTTGATGAAAT CTATCTTTTGGGTGTACAGCAAGTACGTGGACGAGTGGTCGCTCCTTTGTTGTAATCACGACGTG TTCACCGTCATGACCTGAAAATTAAATCAATTTTCTAATTTAGCGAGACTAAATTAATTTTACCC AGCGGTTCAACAAGTCCAGTTGATGCTCCTTGTAATTCTGATCCCTTATAACTCCATGACGAAAC ACCGGTTCTCGGATCAATAATAATTGTAGAATGTGGATCAGGACTGCCACTGCTCACCAGAAGCA TCTGAAATTGTTAATTTACAATTTTTATTGATTTTCACTCGCTCACAAGGGTGTCAATGTCCCGT AAAAATTACAAAAATGGGAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAAAACG GGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAAAACGGGAA Right flanking sequence: Indices 10541606 -- 10542105 GAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAATTCCCGTTCCCG TGAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAATTCCCGTTCCC GTGAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAACACCCCAAAAACGGGACAACGGGAA AAACGGGAAACGGGAATTGACACCCTTGCTCGCTAACAAACCTCCAGTGGCTGTGTGCCCGCAAT GCGGCTTGTATCGACACCCAGATAAGCCATACCAAAAGTAGCTGAAATATAGAAAAACTTTAGAT TTTATAACAAAAGTTATTTAAAAGTTTTAAAAGGGGAGAAAAAGAAAAAAATGATGAGAAAAAAA GCTTGGACAACTTGCGCGTAGAATTTGGCGCCTAGTCCGCAGTCTAAGTCATCGGTGTTTGCAGA CGTAGGATTTACGAGACAAAAAAAACATGTTTTTAATCGAAGTTT Found at i:10541637 original size:6 final size:6 Alignment explanation
Indices: 10541626--10541638 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10541616 AAAACGGGAA 10541626 TTCCCG TTCCCG T 1 TTCCCG TTCCCG T 10541639 GAAAATTTTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.46, G:0.15, T:0.38 Consensus pattern (6 bp): TTCCCG Left flanking sequence: Indices 10541126 -- 10541625 CCGGGCCAGGAAGAACACATTTTTGATGAAATCTATCTTTTGGGTGTACAGCAAGTACGTGGACG AGTGGTCGCTCCTTTGTTGTAATCACGACGTGTTCACCGTCATGACCTGAAAATTAAATCAATTT TCTAATTTAGCGAGACTAAATTAATTTTACCCAGCGGTTCAACAAGTCCAGTTGATGCTCCTTGT AATTCTGATCCCTTATAACTCCATGACGAAACACCGGTTCTCGGATCAATAATAATTGTAGAATG TGGATCAGGACTGCCACTGCTCACCAGAAGCATCTGAAATTGTTAATTTACAATTTTTATTGATT TTCACTCGCTCACAAGGGTGTCAATGTCCCGTAAAAATTACAAAAATGGGAAAACGGGAATTCCC GTTCCCGTGAAAATTTTAAAAACGGGAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACG GGAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAA Right flanking sequence: Indices 10541639 -- 10542138 GAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAATTCCCGTTCCCG TGAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAATTCCCGTTCCC GTGAAAACACCCCAAAAACGGGACAACGGGAAAAACGGGAAACGGGAATTGACACCCTTGCTCGC TAACAAACCTCCAGTGGCTGTGTGCCCGCAATGCGGCTTGTATCGACACCCAGATAAGCCATACC AAAAGTAGCTGAAATATAGAAAAACTTTAGATTTTATAACAAAAGTTATTTAAAAGTTTTAAAAG GGGAGAAAAAGAAAAAAATGATGAGAAAAAAAGCTTGGACAACTTGCGCGTAGAATTTGGCGCCT AGTCCGCAGTCTAAGTCATCGGTGTTTGCAGACGTAGGATTTACGAGACAAAAAAAACATGTTTT TAATCGAAGTTTTCGATTTAATAAGAAATATCAAATTTTCACTAG Found at i:10541670 original size:6 final size:6 Alignment explanation
Indices: 10541659--10541671 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10541649 AAAACGGGAA 10541659 TTCCCG TTCCCG T 1 TTCCCG TTCCCG T 10541672 GAAAATTTTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.46, G:0.15, T:0.38 Consensus pattern (6 bp): TTCCCG Left flanking sequence: Indices 10541159 -- 10541658 TATCTTTTGGGTGTACAGCAAGTACGTGGACGAGTGGTCGCTCCTTTGTTGTAATCACGACGTGT TCACCGTCATGACCTGAAAATTAAATCAATTTTCTAATTTAGCGAGACTAAATTAATTTTACCCA GCGGTTCAACAAGTCCAGTTGATGCTCCTTGTAATTCTGATCCCTTATAACTCCATGACGAAACA CCGGTTCTCGGATCAATAATAATTGTAGAATGTGGATCAGGACTGCCACTGCTCACCAGAAGCAT CTGAAATTGTTAATTTACAATTTTTATTGATTTTCACTCGCTCACAAGGGTGTCAATGTCCCGTA AAAATTACAAAAATGGGAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAAAACGG GAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAAAACGGGAATTCCCGTTCCCGTGAAAATTT TAAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAA Right flanking sequence: Indices 10541672 -- 10542171 GAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAATTCCCGTTCCCG TGAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAACACCCCAAAAACGGGACAACGGGAAA AACGGGAAACGGGAATTGACACCCTTGCTCGCTAACAAACCTCCAGTGGCTGTGTGCCCGCAATG CGGCTTGTATCGACACCCAGATAAGCCATACCAAAAGTAGCTGAAATATAGAAAAACTTTAGATT TTATAACAAAAGTTATTTAAAAGTTTTAAAAGGGGAGAAAAAGAAAAAAATGATGAGAAAAAAAG CTTGGACAACTTGCGCGTAGAATTTGGCGCCTAGTCCGCAGTCTAAGTCATCGGTGTTTGCAGAC GTAGGATTTACGAGACAAAAAAAACATGTTTTTAATCGAAGTTTTCGATTTAATAAGAAATATCA AATTTTCACTAGAATTTTATATTTTTGATCGGTTTACATTATTTT Found at i:10541703 original size:6 final size:6 Alignment explanation
Indices: 10541692--10541704 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10541682 AAAACGGGAA 10541692 TTCCCG TTCCCG T 1 TTCCCG TTCCCG T 10541705 GAAAATTTTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.46, G:0.15, T:0.38 Consensus pattern (6 bp): TTCCCG Left flanking sequence: Indices 10541192 -- 10541691 GTGGTCGCTCCTTTGTTGTAATCACGACGTGTTCACCGTCATGACCTGAAAATTAAATCAATTTT CTAATTTAGCGAGACTAAATTAATTTTACCCAGCGGTTCAACAAGTCCAGTTGATGCTCCTTGTA ATTCTGATCCCTTATAACTCCATGACGAAACACCGGTTCTCGGATCAATAATAATTGTAGAATGT GGATCAGGACTGCCACTGCTCACCAGAAGCATCTGAAATTGTTAATTTACAATTTTTATTGATTT TCACTCGCTCACAAGGGTGTCAATGTCCCGTAAAAATTACAAAAATGGGAAAACGGGAATTCCCG TTCCCGTGAAAATTTTAAAAACGGGAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGG GAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAATTT TAAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAA Right flanking sequence: Indices 10541705 -- 10542204 GAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAATTCCCGTTCCCG TGAAAACACCCCAAAAACGGGACAACGGGAAAAACGGGAAACGGGAATTGACACCCTTGCTCGCT AACAAACCTCCAGTGGCTGTGTGCCCGCAATGCGGCTTGTATCGACACCCAGATAAGCCATACCA AAAGTAGCTGAAATATAGAAAAACTTTAGATTTTATAACAAAAGTTATTTAAAAGTTTTAAAAGG GGAGAAAAAGAAAAAAATGATGAGAAAAAAAGCTTGGACAACTTGCGCGTAGAATTTGGCGCCTA GTCCGCAGTCTAAGTCATCGGTGTTTGCAGACGTAGGATTTACGAGACAAAAAAAACATGTTTTT AATCGAAGTTTTCGATTTAATAAGAAATATCAAATTTTCACTAGAATTTTATATTTTTGATCGGT TTACATTATTTTTTTGTACACACATGAGGCGTAGCTTGCGATTCC Found at i:10541736 original size:6 final size:6 Alignment explanation
Indices: 10541725--10541737 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10541715 AAAACGGGAA 10541725 TTCCCG TTCCCG T 1 TTCCCG TTCCCG T 10541738 GAAAATTTTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.46, G:0.15, T:0.38 Consensus pattern (6 bp): TTCCCG Left flanking sequence: Indices 10541225 -- 10541724 CACCGTCATGACCTGAAAATTAAATCAATTTTCTAATTTAGCGAGACTAAATTAATTTTACCCAG CGGTTCAACAAGTCCAGTTGATGCTCCTTGTAATTCTGATCCCTTATAACTCCATGACGAAACAC CGGTTCTCGGATCAATAATAATTGTAGAATGTGGATCAGGACTGCCACTGCTCACCAGAAGCATC TGAAATTGTTAATTTACAATTTTTATTGATTTTCACTCGCTCACAAGGGTGTCAATGTCCCGTAA AAATTACAAAAATGGGAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAAAACGGG AATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAAAACGGGAATTCCCGTTCCCGTGAAAATTTT AAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAATTT TAAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAA Right flanking sequence: Indices 10541738 -- 10542237 GAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAACACCCCAAAAACGGGACAACGGGAAAA ACGGGAAACGGGAATTGACACCCTTGCTCGCTAACAAACCTCCAGTGGCTGTGTGCCCGCAATGC GGCTTGTATCGACACCCAGATAAGCCATACCAAAAGTAGCTGAAATATAGAAAAACTTTAGATTT TATAACAAAAGTTATTTAAAAGTTTTAAAAGGGGAGAAAAAGAAAAAAATGATGAGAAAAAAAGC TTGGACAACTTGCGCGTAGAATTTGGCGCCTAGTCCGCAGTCTAAGTCATCGGTGTTTGCAGACG TAGGATTTACGAGACAAAAAAAACATGTTTTTAATCGAAGTTTTCGATTTAATAAGAAATATCAA ATTTTCACTAGAATTTTATATTTTTGATCGGTTTACATTATTTTTTTGTACACACATGAGGCGTA GCTTGCGATTCCACAACTTTTTACTCATAAAATTTGAAAAAACGG Found at i:10541769 original size:6 final size:6 Alignment explanation
Indices: 10541758--10541770 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10541748 AAAACGGGAA 10541758 TTCCCG TTCCCG T 1 TTCCCG TTCCCG T 10541771 GAAAACACCC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.46, G:0.15, T:0.38 Consensus pattern (6 bp): TTCCCG Left flanking sequence: Indices 10541258 -- 10541757 TAATTTAGCGAGACTAAATTAATTTTACCCAGCGGTTCAACAAGTCCAGTTGATGCTCCTTGTAA TTCTGATCCCTTATAACTCCATGACGAAACACCGGTTCTCGGATCAATAATAATTGTAGAATGTG GATCAGGACTGCCACTGCTCACCAGAAGCATCTGAAATTGTTAATTTACAATTTTTATTGATTTT CACTCGCTCACAAGGGTGTCAATGTCCCGTAAAAATTACAAAAATGGGAAAACGGGAATTCCCGT TCCCGTGAAAATTTTAAAAACGGGAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGG AAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAATTTT AAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAATTT TAAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAA Right flanking sequence: Indices 10541771 -- 10542270 GAAAACACCCCAAAAACGGGACAACGGGAAAAACGGGAAACGGGAATTGACACCCTTGCTCGCTA ACAAACCTCCAGTGGCTGTGTGCCCGCAATGCGGCTTGTATCGACACCCAGATAAGCCATACCAA AAGTAGCTGAAATATAGAAAAACTTTAGATTTTATAACAAAAGTTATTTAAAAGTTTTAAAAGGG GAGAAAAAGAAAAAAATGATGAGAAAAAAAGCTTGGACAACTTGCGCGTAGAATTTGGCGCCTAG TCCGCAGTCTAAGTCATCGGTGTTTGCAGACGTAGGATTTACGAGACAAAAAAAACATGTTTTTA ATCGAAGTTTTCGATTTAATAAGAAATATCAAATTTTCACTAGAATTTTATATTTTTGATCGGTT TACATTATTTTTTTGTACACACATGAGGCGTAGCTTGCGATTCCACAACTTTTTACTCATAAAAT TTGAAAAAACGGCTAATTTCCGTTTCGTGAAAGGTAGCAGATAAA Found at i:10541978 original size:6 final size:6 Alignment explanation
Indices: 10541967--10541979 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 10541957 TTAAAAGGGG 10541967 AGAAAA AGAAAA A 1 AGAAAA AGAAAA A 10541980 AATGATGAGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00 Consensus pattern (6 bp): AGAAAA Left flanking sequence: Indices 10541467 -- 10541966 GGTGTCAATGTCCCGTAAAAATTACAAAAATGGGAAAACGGGAATTCCCGTTCCCGTGAAAATTT TAAAAACGGGAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAAAACGGGAATTCC CGTTCCCGTGAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAATTC CCGTTCCCGTGAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAATTTTAAAAACGGGAATT CCCGTTCCCGTGAAAATTTTAAAAACGGGAATTCCCGTTCCCGTGAAAACACCCCAAAAACGGGA CAACGGGAAAAACGGGAAACGGGAATTGACACCCTTGCTCGCTAACAAACCTCCAGTGGCTGTGT GCCCGCAATGCGGCTTGTATCGACACCCAGATAAGCCATACCAAAAGTAGCTGAAATATAGAAAA ACTTTAGATTTTATAACAAAAGTTATTTAAAAGTTTTAAAAGGGG Right flanking sequence: Indices 10541980 -- 10542479 AATGATGAGAAAAAAAGCTTGGACAACTTGCGCGTAGAATTTGGCGCCTAGTCCGCAGTCTAAGT CATCGGTGTTTGCAGACGTAGGATTTACGAGACAAAAAAAACATGTTTTTAATCGAAGTTTTCGA TTTAATAAGAAATATCAAATTTTCACTAGAATTTTATATTTTTGATCGGTTTACATTATTTTTTT GTACACACATGAGGCGTAGCTTGCGATTCCACAACTTTTTACTCATAAAATTTGAAAAAACGGCT AATTTCCGTTTCGTGAAAGGTAGCAGATAAAATCAATAGTATCAAACTCTTATATGCATTGTATG TTCTTTTCATGTGATGTAAAAAATCATTTAAATATATTATTCACAGTTTATTCTCCATTCGAAAC CATTATCATTCTTTCCGAACTTCGTGAAGCATTTCTATAAAAAATAAATATAACATTAGAATTTC AGAGCAGAACAGAAGAAAGGGATATTAATTTACTACAAGAGAGAA Found at i:10547930 original size:2 final size:2 Alignment explanation
Indices: 10547923--10547951 Score: 58 Period size: 2 Copynumber: 14.5 Consensus size: 2 10547913 AAACCCGCTG 10547923 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T 1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T 10547952 ATTCGTGACA Statistics Matches: 27, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 27 1.00 ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52 Consensus pattern (2 bp): TC Left flanking sequence: Indices 10547423 -- 10547922 TCTTGCCGCCACCGGCGCCAATTTCGATACCACCACGTGGCGACGTCGCCTCCTCGTCGTCGTAG AACTCGGAGGTGGCCACGTGTCGTGGAGTAGCAGCAGAAGTGTGCAGATGGTGGAAAGCAGCACC GCCGCCGCCGACGGCCGAATCTGCAAAAAAATAAATAGATTGTATGTTTTGTGTACAGTTTTTGT ATTTGTGCATGGCTGCTACAAAAAAAGATAAATAAAAATAAATCCTATTTGGATGGACAACAGAT TTAATATTTCATAGATTAACATTTTCACATAGATGATTTGAAAATATTTTTAGCATCGCTTCCCA CATCCATTTTACTCACAACCTCCCTCCGCTCATCACATATGGATTCAACAAGAGGTGAGGGCAAT GGCAATTCCGGAGATTACGGAGTATATGTCACAAGACCAGTCAGCCGGGTGGGCGACGGGTGGTC TTATGGTGCATCGGTGGGAGACTATCTGCTGATGCAAACCCGCTG Right flanking sequence: Indices 10547952 -- 10548451 ATTCGTGACAAACAATAAACAGAAAAAGTAGGAGGTGGCTGTGTTGCGGTGAATATTTAAATTTT GAATGTGCATTTGAGATCAAATAATGCCAAGAAAATATGGAAAATCGAGGGTGCCATAACAAAGG AAACCCCAGCCATCTGGCACCTTCCGAATGTACACTGGGGGCCTAATGGGTATGTTTTGTATCAA TTGCAATTGACACACGACTGAATTATTTGAAATCAGCTGCCAAAAAAAAAGAACTACAGTAATAC TAAGTAATATTGCTTCAGCCACCAACTCATGACATTCCAATCAGGGTAATCAAAAATAAGCGATT AAAAAAAAAGATAACAATGCCATCTGAATGATCAGACCAGTTGGCTCCGTTTTTGATTTTAGAGT TATTTAGAGCTCTGATTGGCTATTTCAAATGATAAAAGTTGGTCGATGACTTTTCGATGAAAAAA AAAACAAAACAAGGACATTATATATGATTTGGAAGCAGAAAAAGA Found at