TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_III Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 13783317 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:3618796 original size:1 final size:1 Alignment explanation
Indices: 3618790--3618807 Score: 36 Period size: 1 Copynumber: 18.0 Consensus size: 1 3618780 AGACGGCGTA 3618790 GGGGGGGGGGGGGGGGGG 1 GGGGGGGGGGGGGGGGGG 3618808 TGAGGAGTGG Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 17 1.00 ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00 Consensus pattern (1 bp): G Left flanking sequence: Indices 3618290 -- 3618789 AAAACCAAAGAAAAATCATATTTTTCAAGTCAATTTTGGAAAAAAAAAGTTAAACTTTGAATGGA ATTTTGAATTTTTACAATTTTTAAATAAATCTCTATGTATAAAACTTACGGCTCGTCTTCGGGAT TTGGCAAGTTATCATTCACAAATGGAGCTGTCGGTTCTTCAGGTGGAGGTGAATGTGTCGTCTTG CTTGTCGACGGTTTCATTCCGGCGACACTAAAAATATCATTTTTTTGAAGAAACTTGCTAGTGAG ATTCTCAAGAAAAGGCAGAGCACGAAGAAAAAGACAAGACTCTAGTCAATTTCAAACATCTGATG GTGCTTGTTATTAGGAAAAGAGAGGAGCAACACAAAATCTTGGAGCCTCCTGGAAAGAGTAGGAA CAAGAAGAAGAAGAAGAAGCAGGAGGAATAGAAGAAGAATAACGGCGTGAGCAGCACAAAATGAA TGAGCAAAATGGGGCGGGTTGAATGAAGAAGAAGAAGACGGCGTA Right flanking sequence: Indices 3618808 -- 3619307 TGAGGAGTGGCGAATTGTGCACAAGAAGAAGGAAAAGGAGAAGTATCTTGAATTTCTGAGCACAT AAAGAGCAAAGAGAGCGGACCAGAATGTGCAGTCGCACTTTGTTAAACATCCTTAGTTAGGAAAG GTTGGATTTTCAAATTACGGGGGTTTCAAAAGTAGGCACAGAAATGCCTATTATCTTGCAGACAC TATGGATTATCACACAGCTAATTGTAAGTAGGTGTCAAACGATTTTTTCCGGCAACTCGGCAAAA TGGCGGAATTTGGCATTTCTGGCAAATGGGCAAATTGCCGGAATGGAAAATTTTTGGCAAATCGG CAAAATGCCGGAATTGGAAACTTTCTGCAAACCGGCGAAATGTCGGAATTGAAATTTCTGGCAAA TCGGTAAAATGCCGGAATTGAAATTTCCGGCAAATCGGTCAAATACCGGAATTGAAAATTTCTGG CAAACCGGCAAACCGGCAATTGCCGTCCACCCCTGGTGTTAAACA Found at i:3620034 original size:2 final size:2 Alignment explanation
Indices: 3620027--3620041 Score: 30 Period size: 2 Copynumber: 7.5 Consensus size: 2 3620017 GTTGGTTTCA 3620027 TG TG TG TG TG TG TG T 1 TG TG TG TG TG TG TG T 3620042 ATTTTTGGAA Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 13 1.00 ACGTcount: A:0.00, C:0.00, G:0.47, T:0.53 Consensus pattern (2 bp): TG Left flanking sequence: Indices 3619527 -- 3620026 TCATACCAAAACGGACAGTTCTGTAGAATTGCTGATAAGTTACAGAAGTAAGACTTTTTCAGAAA AATTAAAAAATTGTAGGAACCTGAGAGACTCGAGGAGCATGTCCATTTACATTACAGACCGCCGT TCACGAAGAAAAAAGATACGTACAACATATATACATATATGCATGCACAGACACACACACACACA CATGCAGCTTCGCGGCGACGACCGGCGGCGGCGCCATGCAAAAAAAATCGGGGCGCCGATAGAGA GAACAGTGAAAGAAGAGAGAAGACAAAAACGACAACGAAGCGAACGCGAGACGACCGAGATAATG TGTAAGACGAAGAGACGCAGAGTACATTGAATGGGGAACGCGAAGAGAAGAGCATCAGAAGTTTG CAACGACGAGATGGGGCGAGAAATTACTAAATTTTGAGAAAAAATATTGAGAGGGAAAGGAGAAA AGCCTGGATCATCCAACTCCAAAAAGAGAAGAGCGGTTGGTTTCA Right flanking sequence: Indices 3620042 -- 3620541 ATTTTTGGAATAAAAAAAAGGAAAAGGGGTGTCTCGATGCGTTTAGTGAGTGTGTTTGTGTGCAT GTGGGTATGCAAGTGTTTCCTACATATGTGTGTAGCTTGCCCGGAATCCAGCAGCACACGTCACG AGGAATCAGGTGAAGTTAGGGTTCGCACGTTCGAGCAAAGTTATCCATAAATTAACACGAATTCT TTGCAATCGGAAAGACTCTAACAAAACTTCTTGGAGTAATTTAAACTCTAGTTAGAGACTGTTCG GATGTTATAAAAGTCATCCCGTTGATCTTCTCGTCGCACACACACACACTGATCTACCAATAGAG TGCAACAAGAGGACATGCGCGGTTTGGTGGGCTAGATGTGAAGCGACCGCCCTGGTGATCACAAT TCGCTAATCCTTCTCAAACAACATGTGTTGCATTGGAGAAGTGTAGATAAGGTGTTGTTGTTGTT ATTCGGGTTGTATAAAGAAGCTTATTTTAGAGAAGAAAGAGAAGA Found at i:3620345 original size:2 final size:2 Alignment explanation
Indices: 3620338--3620350 Score: 26 Period size: 2 Copynumber: 6.5 Consensus size: 2 3620328 CTTCTCGTCG 3620338 CA CA CA CA CA CA C 1 CA CA CA CA CA CA C 3620351 TGATCTACCA Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 11 1.00 ACGTcount: A:0.46, C:0.54, G:0.00, T:0.00 Consensus pattern (2 bp): CA Left flanking sequence: Indices 3619838 -- 3620337 CGACCGAGATAATGTGTAAGACGAAGAGACGCAGAGTACATTGAATGGGGAACGCGAAGAGAAGA GCATCAGAAGTTTGCAACGACGAGATGGGGCGAGAAATTACTAAATTTTGAGAAAAAATATTGAG AGGGAAAGGAGAAAAGCCTGGATCATCCAACTCCAAAAAGAGAAGAGCGGTTGGTTTCATGTGTG TGTGTGTGTATTTTTGGAATAAAAAAAAGGAAAAGGGGTGTCTCGATGCGTTTAGTGAGTGTGTT TGTGTGCATGTGGGTATGCAAGTGTTTCCTACATATGTGTGTAGCTTGCCCGGAATCCAGCAGCA CACGTCACGAGGAATCAGGTGAAGTTAGGGTTCGCACGTTCGAGCAAAGTTATCCATAAATTAAC ACGAATTCTTTGCAATCGGAAAGACTCTAACAAAACTTCTTGGAGTAATTTAAACTCTAGTTAGA GACTGTTCGGATGTTATAAAAGTCATCCCGTTGATCTTCTCGTCG Right flanking sequence: Indices 3620351 -- 3620850 TGATCTACCAATAGAGTGCAACAAGAGGACATGCGCGGTTTGGTGGGCTAGATGTGAAGCGACCG CCCTGGTGATCACAATTCGCTAATCCTTCTCAAACAACATGTGTTGCATTGGAGAAGTGTAGATA AGGTGTTGTTGTTGTTATTCGGGTTGTATAAAGAAGCTTATTTTAGAGAAGAAAGAGAAGAAGAT ACGGAAAGCTGGCTATATGCAGCACCAACCTCTTTCCAAACTGATCGACTTTCTTTTTCTTCTTC TCCTCTTTTTTTTTGTGCTTCGTTTCTTCTAAGGGCAAAAGAGCACACACACATACACTCTGTGT CGCCTCCAAGAGCCATATCCTTTTGGTAGAAGGGCCGCTTGGCGGTCGGGATGAGATACTACCAC CACCACCATCACCACTACCAGCCGAGTGTGCACTACTCCAAGACACACACACAGAGGACGGACAC ACGAAAAGAGCGACATACGGGGGGCCGCGTATACCCCCACACAAC Found at i:3620492 original size:3 final size:3 Alignment explanation
Indices: 3620484--3620496 Score: 26 Period size: 3 Copynumber: 4.3 Consensus size: 3 3620474 GTAGATAAGG 3620484 TGT TGT TGT TGT T 1 TGT TGT TGT TGT T 3620497 ATTCGGGTTG Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 10 1.00 ACGTcount: A:0.00, C:0.00, G:0.31, T:0.69 Consensus pattern (3 bp): TGT Left flanking sequence: Indices 3619984 -- 3620483 CCTGGATCATCCAACTCCAAAAAGAGAAGAGCGGTTGGTTTCATGTGTGTGTGTGTGTATTTTTG GAATAAAAAAAAGGAAAAGGGGTGTCTCGATGCGTTTAGTGAGTGTGTTTGTGTGCATGTGGGTA TGCAAGTGTTTCCTACATATGTGTGTAGCTTGCCCGGAATCCAGCAGCACACGTCACGAGGAATC AGGTGAAGTTAGGGTTCGCACGTTCGAGCAAAGTTATCCATAAATTAACACGAATTCTTTGCAAT CGGAAAGACTCTAACAAAACTTCTTGGAGTAATTTAAACTCTAGTTAGAGACTGTTCGGATGTTA TAAAAGTCATCCCGTTGATCTTCTCGTCGCACACACACACACTGATCTACCAATAGAGTGCAACA AGAGGACATGCGCGGTTTGGTGGGCTAGATGTGAAGCGACCGCCCTGGTGATCACAATTCGCTAA TCCTTCTCAAACAACATGTGTTGCATTGGAGAAGTGTAGATAAGG Right flanking sequence: Indices 3620497 -- 3620996 ATTCGGGTTGTATAAAGAAGCTTATTTTAGAGAAGAAAGAGAAGAAGATACGGAAAGCTGGCTAT ATGCAGCACCAACCTCTTTCCAAACTGATCGACTTTCTTTTTCTTCTTCTCCTCTTTTTTTTTGT GCTTCGTTTCTTCTAAGGGCAAAAGAGCACACACACATACACTCTGTGTCGCCTCCAAGAGCCAT ATCCTTTTGGTAGAAGGGCCGCTTGGCGGTCGGGATGAGATACTACCACCACCACCATCACCACT ACCAGCCGAGTGTGCACTACTCCAAGACACACACACAGAGGACGGACACACGAAAAGAGCGACAT ACGGGGGGCCGCGTATACCCCCACACAACCACCACCACCATCACCGCTAACGCCGTCATCATTCG ACCAGTGTTTCACTTCTTGTCTCTCTAAGTCTCTATTGAGGAATACTCTGTTAAAGTAGAAGAAG ACGACGACGTCAGTGACGACGACCCGACCGGCGAGTAAAGAAGGA Found at i:3621751 original size:5 final size:5 Alignment explanation
Indices: 3621741--3621753 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 3621731 CTACAAATCG 3621741 GTTGT GTTGT GTT 1 GTTGT GTTGT GTT 3621754 CTTCGGGCTT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.00, C:0.00, G:0.38, T:0.62 Consensus pattern (5 bp): GTTGT Left flanking sequence: Indices 3621241 -- 3621740 CAAAAAAACAATTTCAATTTTCGAAGCGAGCCAAGTAACCAACTGATAACCAGGTCTGCTGCCGA AACATTCGGAAAAAAAAGACAAATGGAAAGGAAAAAAAGGAGAAAAAGAGAAGAGAGGAACGCGC CAAAACATCATCATTTTCGGCGACAACAAAATGATAGTGAGTGTGAGGAGAAGGGCACTGTCAAT TATCGATGACATTTTAGGTGGAAAAAAGTAATTTCTCTTCAATAGATCGGGGACATTTGCCTCCA TTACTAGATCATCAGTTTACGCGAGAAGCACGATTGGAAGACATATACGAAGAGTAGAAATAAAT GAGAGGCGCCCCGCGCGCGATCATCGAAAAGGGGGAACCCGATGGCGGTCACCAGAGCGGTGTCC GTCACCGATGAGGAATTGGAGAAAAGATGGTGGTAGTGGCCACCGCCGCCGCGCCTTCATCCAAA ATAATTCATCGTAGATAGATAGAGAGAGAGAGAGACTACAAATCG Right flanking sequence: Indices 3621754 -- 3622253 CTTCGGGCTTTCAAGTCACCGCATCGTTCCGCTTTTGATTGTCTATGTCTCTTCAATGCAACTTC GTTCTATACTGAATGTGTGTGTGTGCACGTGTAAGAGAAGTCGGTTAGGATATATCATAACATGT CGTTTTTTCCATTTTAACTACCGAGATAGCCACATGGAAAACATACAGCTCAGCTTCGAAATGTA TTATACCACGAATTTCGGGACGTTAGGATCTACGTGATCTTTCATTTGCTTGAACTTAGGGCTTC CCTGGAAGGCAGGCGCGGTGTCAGGGCCTTGCGCCTGCCTTCAACCTACCGCCTTACGCCGGCCT CTTGTCTTATTTCTGCAATATGGCTTGAAGTCAAAGGCTTGGTGTTCCAATTACATAGTGCGAAA GGTAGTTCTTCCGCCGCGGCCGACACTTTTCGGGTCCACGCCACACCATACAGAAGGCGCGAGGC AGGCGCGGCAGGCGTTTGGCGCCTACAAGGAAGCCTTGCTTGTAC Found at i:3622997 original size:5 final size:5 Alignment explanation
Indices: 3622987--3623000 Score: 28 Period size: 5 Copynumber: 2.8 Consensus size: 5 3622977 TGGGAATAAG 3622987 CGAAA CGAAA CGAA 1 CGAAA CGAAA CGAA 3623001 GAAAACGAAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 9 1.00 ACGTcount: A:0.57, C:0.21, G:0.21, T:0.00 Consensus pattern (5 bp): CGAAA Left flanking sequence: Indices 3622487 -- 3622986 AAGCAATCAGATTTCAATCTATTCTCGAGAATAAATAAAAAACACTAAGAGAACGAGGAGAAACA TGTTAGTTGTCCGGTTTCGGAGAAAATTGAAACAAAAGCTGAATATGAGAAATTTCTATATTCAA ACTTCCATAAATTTCACGAGTAGTCATAAAATGACGTTGTTGTCTGACAGGAGACACTAATCTTT TAACTTGACAACCTAGTCTCTTCGACCACGTCACTAGATTGTGCCAAGAAATTTACGGAGTCGCG CCGCTCTTTCTCGTGAGCAAGAAGAGAGAAGGGAATAAATAATAAAGCACCGACAACGAAAAGGA GTGTGTCTCGTAGGATGTGCTGGCGAGAAGAAGAAGCGGCAGCAGCAGCAGCAGCTTCGCGAATT AAAAAAACAGAATGACGAAGCAGCAACCACCTCCTCCGCATTGCTGAAACAACAAAAAAAGGAAG GACTTTTTTCCGAAGAAATGTATCTAAACCCATTGTGGGAATAAG Right flanking sequence: Indices 3623001 -- 3623500 GAAAACGAAATAGAAGAGAGGCATATTTCTATACTTGATGCGACGAGCGTTTTTCTCCGTGTGTG TTTATAAACGCACAGACACGCAATCTCCCGTTGTTTCAAATGTCTTCGAGTTGCTTCTCCAGACC GGTGTCATCCACTAGAGGGGCTTCTAAAACCGTTTTTCAACTGGCTATGATGATGATTAATTGGT GGAGCTCGCCGGAGCCAGAAGCGACTAACTTTGATGATGCTACTGATAAAAGGATGTGACGGATG AAATATGGGGTTTTCCAATAGAAAAGCTCGAGTATAGAAAATCAAAAATTCAAACTTTTGCAATT GCAGAGACGGAAAAAAATTTGTGGCCGAGTTTTACTTTTTCGCGGCCACGTAACATAAAAAAGGT GAAAAGTCTTCAAATTCCATGATTCTCAACTTTGGAGTGAATATTTTTGAAAGCCATCCCTGTTA TATTTTTCCGAGAAGAAATGAATATTTGGGGAAAAAGTTGGTTCG Found at i:3625830 original size:6 final size:6 Alignment explanation
Indices: 3625821--3625835 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 3625811 TCGAAGTGAA 3625821 GGAGAT GGAGAT GGA 1 GGAGAT GGAGAT GGA 3625836 TGAAATATTG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.33, C:0.00, G:0.53, T:0.13 Consensus pattern (6 bp): GGAGAT Left flanking sequence: Indices 3625321 -- 3625820 CGGAAAAACGGCAATTGCAGAAAAGTTTCGGCAAATTGTGGTTTTGCATTTTGGAAATATGAGAA TTTCAATTCTAATCGGCAAAAACAAAAATTGGCAATTCGCCGGAATTTAAAATTTCCGGCAAATC GGCAAACCGGCAAATTGCCGGAATTAAAATTTGCTTGAAATTTCTAAATTGCAAAAATAATTAAA ATACCAAAATTTTGCAGAGCACTTCAAATTAAAAAAAAAAAACTTCACAATGAAATGCAAGTTTT TAGGTTCAAATCAATTTCAATCTTCTCAATTTCATCTAAGAATTTCACTCAATTGTCTCACATAG ACATTTACACTGAAAAGTGCGGACAGGTTATCAAAAAGTCAGTCAAAAGGACGAAAGCATTGGAG GTGCGTGATGAGAAGAGGCGACAACGACCACATAAATGATTTGGCAGTTTAGTCCCGGACGGGCG CCATCGTCGAATTTTAATTGGTTCCGTTGTCTCTGTCGAAGTGAA Right flanking sequence: Indices 3625836 -- 3626335 TGAAATATTGAACAAAAAATGAAAAAGTTGGTGAATTTTAGATTGCATTTAGATAGAGAAAATGA ATATTTTTGGGTGAATTCTACTTCAAAAATTTCTAGGAAAAGTGTGTGTAAATACGGATAATAGG AGTTTTCAAGGAACACTGTCTAGGGTCAACTTCTCAAAAAAGAAAATAATAATATATTTTCAGAA CCAATTTTAGAAGGACAAACTAGCTCAATTTTCGAGGTTTCTCGGCAATGTTACAGGCTTTTTCT TAAATAGAACAAAAATTACGCTTTGAATGGGAAATGCACCAAGAATTGGTGAAAATCCTCGGGGA GTACACGAGCTGCGTAAATCGACACGAGGTTTTTTATAGACTTTCATGGTTTTTTTTTTCAAAGT TGGGAATCATGAATCACACCAAATGTTACAAAAAAAAAGTATGTGATTTCAAATTTTTAAATTGA AACTATTTTCTCCTTTTGAATTTTTTTGTCAATATTCAAAACAAT Found at i:3626519 original size:6 final size:6 Alignment explanation
Indices: 3626508--3626520 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 3626498 CAGCAAAAAA 3626508 TTTATT TTTATT T 1 TTTATT TTTATT T 3626521 GCTGCAAATT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85 Consensus pattern (6 bp): TTTATT Left flanking sequence: Indices 3626008 -- 3626507 AAAATAATAATATATTTTCAGAACCAATTTTAGAAGGACAAACTAGCTCAATTTTCGAGGTTTCT CGGCAATGTTACAGGCTTTTTCTTAAATAGAACAAAAATTACGCTTTGAATGGGAAATGCACCAA GAATTGGTGAAAATCCTCGGGGAGTACACGAGCTGCGTAAATCGACACGAGGTTTTTTATAGACT TTCATGGTTTTTTTTTTCAAAGTTGGGAATCATGAATCACACCAAATGTTACAAAAAAAAAGTAT GTGATTTCAAATTTTTAAATTGAAACTATTTTCTCCTTTTGAATTTTTTTGTCAATATTCAAAAC AATATTCAATTTTTTCAGCAATTTTTCGGGAAAAAACATTTAAATTTTTTGGCATTTTTTAGTGG AATTTTTTTGTTTTCTGCTACCAACAAATCTTAAAAGTATAAAAAATTTTATATTTTTCTCGCTA ATTTCAACTTTTCATCAAAAATTATTGTGTATTTTCAGCAAAAAA Right flanking sequence: Indices 3626521 -- 3627020 GCTGCAAATTTTGCTGGATTTTTTTTTTGGTTTTTTAAACAAAATTTGATTTTTTTCAAATTTTT TTTTATCAATAGAGTGATTTTTCTTGGTAAATTTAATTTTAATTAAAAAATTTCAATTTTCTTAA ATGCGATTTTTTTTCCAAAATTTTTTAGCAAGAGAGTAGTTTTTCTTGGTAAATTGTATTTTAAT TATATAGTTTTAATTATCTAAAATTCAATTTTTCAGGTAGTAAAATCCAGTTTTCTATACGAAAA AGCAATTGAAATTTTTTTTTCAAAAGCCACTGGAAGTTGACAAATTCGGCAAATTGCCGGTTTGC CGGATATCAGATTTGCCGGAAATTTTTAGAAGGATTTTTTATAAGACGGAACCCTGAAAACTGTG CTTTTTTGATATTTTTTCCTATTTTTTTATTTTCATAGAATTTGCTTATTTTTTCGGAGTAAACA TGTAAAATTGAGGCAATTTTTAGGTAAATTTTTTCCCGGAAAATT Found at i:3632656 original size:2 final size:2 Alignment explanation
Indices: 3632649--3632665 Score: 34 Period size: 2 Copynumber: 8.5 Consensus size: 2 3632639 CATTTTTCGG 3632649 GA GA GA GA GA GA GA GA G 1 GA GA GA GA GA GA GA GA G 3632666 CTGGCTCGCT Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 15 1.00 ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00 Consensus pattern (2 bp): GA Left flanking sequence: Indices 3632149 -- 3632648 GTTTGCCGGAAATTTTGTTTTTCGGCAGCTTGCCGATTTGCCGAACATAAATTTGAAAAATCGTT TGCCACCCACCCCAGATGCTTCTTCACTTCACCTTTATAGTTTTAGAAAATAACGAAATTGTTCA ATTCGAAGAGTTCTACAGTAATCCTAGTAATCCACGCGTGGTCCATTAAGTCTTTCTCATAATCT TCAAGAATATGTGTTATCTCTGTGTTACATCTATTGTAACTCGAATGAGACTCTTCAAAAGCTCC TCAATTATTCGACACGACACACACATTCTTGCTCCGTGGAGCAAGCTCTTCCTCATAGAGCAGTC GCTTCCAATTAGAAGCTCTCTCTCTCGAAGAGCTCTGTATGATAAACGTTGTTTGACGCACACAA ATGTGAATTTCAGAATTTCAAATTCATGACTGCTTCGTCACCAGTCACTCAGCAGAGGAGGCCCC TCTCGAACAAACCCTCGTGGGAATGGTTTTTCTTCCATTTTTCGG Right flanking sequence: Indices 3632666 -- 3633165 CTGGCTCGCTTTCGCCTTCATTCCGAACATTGCAAACATTGACCGATCCGTTTTTCCATGACTTA TTGTCTTTTGGCATCGATTACGCAACATTCCGGTCATTCTCTTCGGCGAAAAACATAAATTTTTG GCAATTTGCACTTTCTAAGCTTTTGAATTAAAATGAGTTAACATTTTTGGCATTGTCAATTTTTT AAAGAAAGAAAATTCGACAGTTCTCTTAATCTTTTCCAATTCGCGAGTTGCCGAATTTTAAATAG TCGAAAATGTTTCGAAAAAAAAATTTTTGACATTGCCAAATTTAAAATGTTTTTTTTTAAAACTT TTTTATTAACTTTTAGAACAAATTTTAAAACTTTCGGCAACTGTCGATTTTTGAAATTTTCAAAA ATTCGATAATCTCGTCAATTGTCGCCTGATTTTTTGAAAACATGAGGAATCTTACTTTTTGTTAG GTACTCGTAAGTGTTTGTACAAACAAATATGACTCAATGCGGGCA Found at i:3634165 original size:4 final size:4 Alignment explanation
Indices: 3634156--3634168 Score: 26 Period size: 4 Copynumber: 3.2 Consensus size: 4 3634146 AATTCTTACT 3634156 TTTC TTTC TTTC T 1 TTTC TTTC TTTC T 3634169 GGTGTAATCA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 9 1.00 ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77 Consensus pattern (4 bp): TTTC Left flanking sequence: Indices 3633656 -- 3634155 TTGCCGGAAATTTTGAATTCCGGCAATTCGCCGATTTGCCGGAAATTTTTATTTTCGCCAAATTA CCGGTTTTCCGGAAATTTTCAATTCCGGCATTTCGCCGATTTGCCGGAAAAAAAAATCATTTACC ACCCATCCCTGCATTAAATTTTTTGGAGAAACTATATTTTCCTGGGCTCTTTTGTATTGTTTCAA CTCGCGTATCGTATTCCTCCGCTGTAGAATTCCGCCAAGTGGTCACACCACTCAAGTGGGAAACT GATCTGATAATAAGACACTCGATGCACTCATAGGCTTCTCGTTATCAGCAATTTATGATAACATA ACCAGATTATTCTGTTGATCAAATATTTGGGTCTCAGTGGACCATTGTACTTAGTACTCTCTTCA TAGTACATTTTCCAATACCACTCATCCATTTTTAATCAACTCGGGAATGCACTTTTACTTGGAAT AAAGGTTCTTTGCACTAACCATTCAAAGTCTGAATAATTCTTACT Right flanking sequence: Indices 3634169 -- 3634668 GGTGTAATCATCTCGTCACGTTCCGTCAACAAATCCCAATATGTATTTGGTCCCAGTTTTATAAG AAACTTGATATCTGGCTCCTTTTCATTTGGCTCTTTTTCCGTTATAAACATCTCATCGCATGCCA TTTTCCTCCATGGTTTTCTTGTACACGCCTAATCAAATTAGGCTAATCGTTGGTGAATGGGAAGG GTGAATCCCCTTTTTTCTTGCCTATTCTCCTTCATTACTCAGTCGTCGTCCTTGCCGTCTCAGCT CGAAATAGTGCCTAATTGATGAGACCGATCCGGTTTTTCTTTGTATCGCTTCGGTTGGTGGTTCT GACTATGAAGTCTTATAGGCGAAAATTGTATTGAGTGTTCCGTTTTTTTTTCTAGAATTTTTGGA ATTTGACTCAAAGTGTCAACAACGAAAGTGATTCGAAGAAATCGAAATAAGTACTGAAAGGCAAT AATTTTTATTTTCTTTGCAGTCTCCTCTGCTGCATGACGTCATCC Found at i:3635740 original size:1 final size:1 Alignment explanation
Indices: 3635715--3635729 Score: 30 Period size: 1 Copynumber: 15.0 Consensus size: 1 3635705 TAGTCACCAA 3635715 CCCCCCCCCCCCCCC 1 CCCCCCCCCCCCCCC 3635730 TATGACCCCC Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 14 1.00 ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00 Consensus pattern (1 bp): C Left flanking sequence: Indices 3635215 -- 3635714 TCTTTTTTTGTAATATTTTAAGGAAAATTTTTTGAATTCTCGAAATCTCCAGGCGTACTGATTTT GAATGTCAATGAATTCTGAAAAACCCTAGCCATTCGTATCAGGGGTAGGCGGCATTTCGGCAATT TGCCGGTTTACCGGAAATTTTAAATTCCGGCAATTTTTGCCGATTAAAGGTGCAATTCTCAAATT TCCTAAAAAAAGAAGTCAAAACCACTATTTGCCATTTTTCCGGCAATTTTTGTCGATTAAAATTG AACTCCTGATATCTCCAAAAACTGTGCGAAACCACAATTCGCCGTCTTTCCAGCAAATCGGCAGT TTGCCAAAATTTGCCGGAAAAATCGTTTGCCAAGTGAGTCGTATAACTTTTGACCACCCAGTTTG AACAAGAACAGCTGACGAAAAACTTGTTAAATCTCCGACTCTCACAAACTACATTTGAACAGACA AAAACCAAAATCAGATTTGTATTGGTATCTTTTTTTAGTCACCAA Right flanking sequence: Indices 3635730 -- 3636229 TATGACCCCCCTTCTATCCTTTCTCTCTCTCTCTCTCTCTCTCTCCTGCTCTCTCTCTCTCTCCT GCTCTGTCCATTTTTCGCGCGCATGTCAAATAGGCACCGCCCTCTTTTTGGAAATTTCCTTTTTT TGCATTTGTTCGCGCGCTCTCTCCCCGTGGACACCGTCATTTTCACGTCAAACTGTCACTTTTGT GGCGATCCGGTGAAACGTGAACACCTGTATTCTCAATATTCCCATGCAAAAGTGGTGCCTATGAG AGCAAACAGTCTTCCTCCTCACCGACTTCTCTTCATTCTCCGCCGTTGGATATCTATTGTTATTG TGCCGAATGGCGTCGTCCGAGTTGCTCATAAATCGTCGTTTTGACGATTTTATACTTGAAGGATG TAGTTCAGACCGTCCGTCTTCGGCTGTCACCGTACTTCATCGCCCACGCAAGAAACTTTCGGCGT TTGTGAGTGCGATGGCTGCGAGAGCCGCTTCACCGCAGAGCCCCA Found at i:3637672 original size:2 final size:2 Alignment explanation
Indices: 3637665--3637683 Score: 38 Period size: 2 Copynumber: 9.5 Consensus size: 2 3637655 TTGCAAGGTT 3637665 AG AG AG AG AG AG AG AG AG A 1 AG AG AG AG AG AG AG AG AG A 3637684 CAAGTTTTTT Statistics Matches: 17, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 17 1.00 ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00 Consensus pattern (2 bp): AG Left flanking sequence: Indices 3637165 -- 3637664 ATGTGAATGTGTGGTCATTCAATTAGCAATAGTAGCTGCTGCTGCAGAAAATGGCTATGTATTCC TATACCACAATTACACATCGATTCAATCATCACTTCCTTCCTCCATCTCTTTCTCTCTCTCTCTT TTTCTATTGAGAAAAAACAGTGAGACAATAGGGTTCTAGTAGGCGGAAGAGATGAAAAGTTTTTG TCTTTTTTTTCTCGTTTCCGCATGGTTTTTGGGGGGCGTGATTCGGCGGAAAGCACGGGTAAACA CTGACAAAAAAAACACACCTGCCTGTGTTGTCTACCATCTTGTGTTGCTCCGAGAGCACAGACGG TTTCAGTGTTTCACCACCACTAGCCAAAGTGAATTTTGTTGTATCTCTACATAGATATGACGATT CCTCCTCGTTGGTTATCATTTTCATTTTCACTTTGACTTTTTTTCCGCGAATGTTTCGTTTTGAT TCTTCATCGCCGTCTCACAAAATGCCCATCAAAAATTGCAAGGTT Right flanking sequence: Indices 3637684 -- 3638183 CAAGTTTTTTGAAATTCCTCATTTTTTAATAGTTAGTGGAACCTGTTTTTAACAGTTTCAATAAC ATATTAGTCAGCAGTTTTTTTTATTGAAAAAGTATTGCGAAATCTTAAAAAAGGGGGATCAAAAA TATGTAAAACACACAATTTTCGGAAAAATTACCAAATTTCTGTTGAAAATTGGCGCAAAAATATA GAATTTCGGAATTTTTTATATTAATTCTCACCAGAGCTGGGATCAAAATTTTATGCTGGAAATTA TTTTTTTTTAACCGTAAAATATTTTTTCCAGACACGACATTTGTGGATTTTTGTTCGCAAAAATA CCGTACCCGGGGTTTTGAAACGACAAATTTATATTAAATACGAAAAGGTTTGCGCCTTTAAAGAG TACTGTAGTTTCAAATTTTTTCATTTTTTGCATAATTTTTCTCTCACGATTTTCCAATTTTTTTG GGTTTTTGCTGTTTTTATTCAATTTTTTAAATTGAAATAAGTTAA Found at i:3638716 original size:1 final size:1 Alignment explanation
Indices: 3638710--3638724 Score: 30 Period size: 1 Copynumber: 15.0 Consensus size: 1 3638700 TAGTATTAGA 3638710 GGGGGGGGGGGGGGG 1 GGGGGGGGGGGGGGG 3638725 CTCCGAACGA Statistics Matches: 14, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 14 1.00 ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00 Consensus pattern (1 bp): G Left flanking sequence: Indices 3638210 -- 3638709 TCGATATTTTTCGGTACTTTTTCAAAGCTCGCAGCATTTTGTAAAAAAAAAAGTCGTGTCGAGAC CGGTTACTGTATTAAGGCGAAAGCCGCAAAATTTTGCGTCTGGATAATATTCAAACTCCCAGGAA AAAACTACGCAATTTTCACGAAATTTCAAAATTTTTGGCGAAAAAAAGGTAATCTTGAAATTTCG CGAAATGTCCTATTTAAGCTCCGCCCATATCTTGGCTCCTATTGGGGGTTTCAACAATATTTGAG AAATATGATCTTTTAGAACACTTTTTAGGTCAATTTCTCTGCCATTCCACATCATTTTTAATCCC AAATGTCTGAAACGCGACCCGGTAAACGTATGTAACATGAGAAATAACCCAGAAATGTTTTTGTG GGTGGTGGTTGCTCGGAGCTTAGTGTGTGCTTCAACTCGGCTCCGCTAGCTCTGAAAAATGAGAA ATGAGCAAGAGGTTGTTTCGAGAATTTATGAGCCGTAGTATTAGA Right flanking sequence: Indices 3638725 -- 3639224 CTCCGAACGAACAAAATGAGCCAAAATTGGAAGAGAAGGACAATGACAAAGTGCTCTTTTTTTGC AGGTTGTCGACGTCTACGACCTTGCTGCTTCTATCGGAAATGACTTTGAAAAGCTCATTGACAAT TATGGAAATGAGTGTGTACGGGGTATTATGCCGAAGGTATTTATTGAGGAAAAAATTCGAATAAA ATTAAAAGTTAAAAGAAATGTAACTTTGAAATTCAGAAAAAGACACACTCAAAAATATCAAAAAA TAGTTGAAAAAATAAAAATAAAAATTCCTTCAAAATTAAAAGATAATTTGAATAACCTACTTACT GTAAATTCAATTTTTTTTTCTCAAAAAAGTGGAAAAATAGTTTTAAAAAAATTTAAAAATCAATT TTCCCGCTGCGAAGAGAGTTTTAAAATTTTAAATTACAAAAAAAAAAAAAGAATTTTGAGCAAAA ATTAATATGTACTTCACAGAAAAATGTGCTCGAAAACCATTTTTT Found at i:3639025 original size:6 final size:6 Alignment explanation
Indices: 3638992--3639009 Score: 36 Period size: 6 Copynumber: 3.0 Consensus size: 6 3638982 AAATAGTTGA 3638992 AAAAAT AAAAAT AAAAAT 1 AAAAAT AAAAAT AAAAAT 3639010 TCCTTCAAAA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 12 1.00 ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17 Consensus pattern (6 bp): AAAAAT Left flanking sequence: Indices 3638492 -- 3638991 TTTTAGGTCAATTTCTCTGCCATTCCACATCATTTTTAATCCCAAATGTCTGAAACGCGACCCGG TAAACGTATGTAACATGAGAAATAACCCAGAAATGTTTTTGTGGGTGGTGGTTGCTCGGAGCTTA GTGTGTGCTTCAACTCGGCTCCGCTAGCTCTGAAAAATGAGAAATGAGCAAGAGGTTGTTTCGAG AATTTATGAGCCGTAGTATTAGAGGGGGGGGGGGGGGGCTCCGAACGAACAAAATGAGCCAAAAT TGGAAGAGAAGGACAATGACAAAGTGCTCTTTTTTTGCAGGTTGTCGACGTCTACGACCTTGCTG CTTCTATCGGAAATGACTTTGAAAAGCTCATTGACAATTATGGAAATGAGTGTGTACGGGGTATT ATGCCGAAGGTATTTATTGAGGAAAAAATTCGAATAAAATTAAAAGTTAAAAGAAATGTAACTTT GAAATTCAGAAAAAGACACACTCAAAAATATCAAAAAATAGTTGA Right flanking sequence: Indices 3639010 -- 3639509 TCCTTCAAAATTAAAAGATAATTTGAATAACCTACTTACTGTAAATTCAATTTTTTTTTCTCAAA AAAGTGGAAAAATAGTTTTAAAAAAATTTAAAAATCAATTTTCCCGCTGCGAAGAGAGTTTTAAA ATTTTAAATTACAAAAAAAAAAAAAGAATTTTGAGCAAAAATTAATATGTACTTCACAGAAAAAT GTGCTCGAAAACCATTTTTTTTTTATTTTTGGAGCAAAAATATCTAAAAATAGTTTTAAAAAATT AAAAAGAAAATGTCGAAAATCCTTCAAAATTAAAAAAATAGAATAATTCACTGTAAATTCGAATT TTTTATCAAAAAAGTGGAAAAATAATTTTAAAAATTTAAAAATCAATTTTTCCAATTCGAAACTC ATCAAAAATTGAAAATTTCGGCTCAAAATCGGATTTTTTACAAAGAGAAATTGGAAAGTAGATTT TTTTATAATAATTTGAAAAATCCTTCTCCTAAATTTTGAAAATAT Found at i:3639180 original size:1 final size:1 Alignment explanation
Indices: 3639152--3639164 Score: 26 Period size: 1 Copynumber: 13.0 Consensus size: 1 3639142 TTTAAATTAC 3639152 AAAAAAAAAAAAA 1 AAAAAAAAAAAAA 3639165 GAATTTTGAG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 12 1.00 ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00 Consensus pattern (1 bp): A Left flanking sequence: Indices 3638652 -- 3639151 TGAAAAATGAGAAATGAGCAAGAGGTTGTTTCGAGAATTTATGAGCCGTAGTATTAGAGGGGGGG GGGGGGGGCTCCGAACGAACAAAATGAGCCAAAATTGGAAGAGAAGGACAATGACAAAGTGCTCT TTTTTTGCAGGTTGTCGACGTCTACGACCTTGCTGCTTCTATCGGAAATGACTTTGAAAAGCTCA TTGACAATTATGGAAATGAGTGTGTACGGGGTATTATGCCGAAGGTATTTATTGAGGAAAAAATT CGAATAAAATTAAAAGTTAAAAGAAATGTAACTTTGAAATTCAGAAAAAGACACACTCAAAAATA TCAAAAAATAGTTGAAAAAATAAAAATAAAAATTCCTTCAAAATTAAAAGATAATTTGAATAACC TACTTACTGTAAATTCAATTTTTTTTTCTCAAAAAAGTGGAAAAATAGTTTTAAAAAAATTTAAA AATCAATTTTCCCGCTGCGAAGAGAGTTTTAAAATTTTAAATTAC Right flanking sequence: Indices 3639165 -- 3639664 GAATTTTGAGCAAAAATTAATATGTACTTCACAGAAAAATGTGCTCGAAAACCATTTTTTTTTTA TTTTTGGAGCAAAAATATCTAAAAATAGTTTTAAAAAATTAAAAAGAAAATGTCGAAAATCCTTC AAAATTAAAAAAATAGAATAATTCACTGTAAATTCGAATTTTTTATCAAAAAAGTGGAAAAATAA TTTTAAAAATTTAAAAATCAATTTTTCCAATTCGAAACTCATCAAAAATTGAAAATTTCGGCTCA AAATCGGATTTTTTACAAAGAGAAATTGGAAAGTAGATTTTTTTATAATAATTTGAAAAATCCTT CTCCTAAATTTTGAAAATATTTTTTGAAATCTTTTTTTGCAAAAAGTTGTCTTCTAAAAAAGCAC CTTTTCTGTTAAAAAAAAATTTGCATTAAAAAAAAATTTTAAATCAAGTGTTCGACATACTTTTA AAAATTGAAATTTAAAGTACATATGAAAAAAAAATTTAAATATAG Found at i:3642141 original size:3 final size:3 Alignment explanation
Indices: 3642133--3642147 Score: 30 Period size: 3 Copynumber: 5.0 Consensus size: 3 3642123 TATGAGATTG 3642133 GAT GAT GAT GAT GAT 1 GAT GAT GAT GAT GAT 3642148 TTTGATCGGA Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 12 1.00 ACGTcount: A:0.33, C:0.00, G:0.33, T:0.33 Consensus pattern (3 bp): GAT Left flanking sequence: Indices 3641633 -- 3642132 CCAAAAATATTTTTGATATTTTTTAAAAATATTTTTAAATTCCCGTACGTAATGATTACTGTAGA TTTTCAATTTCTAAAGGTCGGAAATTTGTGTAATTTTCTTAATTTTCCCTAAAACAAATTGATCT ACTACTTGAATCGGAAAAGTGTCTTAAAATATTGCAAAAAATTGATTAAAATCACGAGTATGTGA AAAAAATCTAAAAATTAATTTTTAGCAGTTTTTTAACTATGAAAAACGGAAAAATCTCGGAAAAT GGTCAAAAATTACAGTAGCCGCGAGGAAGTTCAAATTTTTTTTTTTAATTTTAAAATTGTCTACT TTTTAAATAATTATTATTATTTCCATAATTTCAGGACAATAACGAACCTCGATTCACGTTAAGCG AACTACGAGAAGTTATAAAAGAGAAGAATATTCTGAAAGGACGAGTAATGGAATTAGAAGAAGAA CTTGATAATTTCAAACCGGGAGCCAAAAAAGAAATTATGAGATTG Right flanking sequence: Indices 3642148 -- 3642647 TTTGATCGGAATCCATTGTACGTTGTTTTTTGAAATTTTTTTATAACAAATTATTGAAAAAAAAA CTAGAAATTCAGAAAATTGAAATTGGAATTAACATGATCATTTTTAAGACTTTTTAAAGAAGATT GAAAATTATAAAAATTTATTTTGAAAAAAAAAATTTTTAATTTGCTCTAAAATACTCAAAAAAAA ACGGAATTTTTAATACTACTACTTTAAAAATTTGTAAATTAAAAAATAACATAATTCAACTGAAA AAACGGCTAAAGCTAGCTTCTTTACCTAAATTTTCAGATATTTTAAGATATTTTACATTTTATCC GAAAAATAATTTTTTTAAACCAAAAAACACAACATTCTGTTCTAATTTTTGGGGCAAAAAACAAA AAAAAAACATTTCTTCCGAAAATTCGAAAAAAAAAAACCAAAAAACACAAGTTTCCAACCAAATT TGTCGATTTTTGAAACAAACGAAAAATCGAGAATTTTTCGTTTTA Found at i:3643407 original size:1 final size:1 Alignment explanation
Indices: 3643401--3643413 Score: 26 Period size: 1 Copynumber: 13.0 Consensus size: 1 3643391 TTCAAAAGTA 3643401 TTTTTTTTTTTTT 1 TTTTTTTTTTTTT 3643414 AAATTTGTAC Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 12 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 3642901 -- 3643400 CTTTTTTCTCAAAATTTTCCTAAAAGTAACCCCAAAACTTTTTTTTCAGACAACCAGACACCTCT TCGGCCCAAAGTCTCGGCGTTGACGGTGACGATTTACCGGTTTATGGTCCAATGCCAAAAGAACC CGACGAGAAGCTTCATCCATGGAAATATGAGAGAAAAGATTCCGGAGTTCGAAAATTGTGAGTTT ATCCTTCTTCCCATTTCAAATTTTTAAACCATGTAAAAAGTATTCAGTTTCCGCTTCTTCAAAGA CTTTGGAGCGACGGCGTCCCCCCGCCGAGGATCTTCTGCAAACGCGTCTCCTCGACTACCGGCTC GTGCGATCCCACCATCCCTCAATTGATGATCATGGCTCCGATGCTTTTGCCAGTTCATATTTTCT TTTCTGCAATGGTTTTCATGTTTCAGTGTCTGTGACACCCCTCCATTCTCTCTAATCATCACATT TTTTGATCTCACTACTAGTCAAACCCCATTTCAGCTTCAAAAGTA Right flanking sequence: Indices 3643414 -- 3643913 AAATTTGTACGACATGTCTCTCACTCTCTGCCTGCTCCTTGATGATTATGATCGACTATCGATCG ATTTTAGGCTCAATTTCGCTTCCAAAAAAAATCTATTCATTTTCCCCGTGTTTTACCCTTCCCTG TCTCTTATTTTTTGCTCTTCATGTGGCATATATATGTAATTATGTGTGTTGTCATACTTTTTGTC ATCTTTTTTGAAATATCGAAATTAACAAAGAATTTCTCACAAAAATTCACAGTTGTTTTCAATTT TCCACACACAAAACATTTTTCAAAACTATCACGGAAAGCTTCTGCTGCTGCGTGGTCAGAGATTT TCGGAGCAAAAGAGCAATGTGTAACACTGGCGCTCTGGAGTGCGGGAAGGAAGAAAAACGAAAAT TCAGACAGCTGTTGAGCTGAACAATTCTTTGCGTTGAAAATACTGATCTGGTTCGCATTTTTTAC GGATTTTTATTATGAATTTTGGAGATTTTTGGACATTTCTGCACT Found at i:3645936 original size:1 final size:1 Alignment explanation
Indices: 3645930--3645942 Score: 26 Period size: 1 Copynumber: 13.0 Consensus size: 1 3645920 AGTGGCCTAG 3645930 TTTTTTTTTTTTT 1 TTTTTTTTTTTTT 3645943 CTGGTGGCCG Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 12 1.00 ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00 Consensus pattern (1 bp): T Left flanking sequence: Indices 3645430 -- 3645929 AAAGGAAAATTATGGTAATTTTCAAAACGTGGCTGCGAAATGGGAAAACTAGGCCACCACAGAAA ACTAGGCCACCAGAGAAAACTAGGCCGCTAGAAAGATAAACTAGGCCACTAGAACGATAAACTAG ACCGCTTGAAAAACTAGGCCACGATCAAAAAAGCTACTACTATTGAAAAAAAAAACTAGACCACT GGACAAAAAGCTAGGCCGTTCGAAAAAAGACACTAGAAAATAACTAGGCAGTTTTTAATTAATTT CATTAATTAATTGCAATTAATCAAGTTTCAAAAAATGCGAAAACTCGGCCACCGACTTTTTTCGC GGCCGCGTGGTTCCAAACTATGAAAAAAATAACAGCAAAGTCGGTGGCCTAGTTTTATTGTCTCT TCCAAATGACACATACGATTGTAAAAATGGCTGGGAAAATCAGTGGCCTAGTTTTTTTCTAGTGG CCTATAATTTCTCTAGCGGCCTAGTCTTGATTGCTAGTGGCCTAG Right flanking sequence: Indices 3645943 -- 3646442 CTGGTGGCCGAGTTTTCCTTTCAAATTAGGATACTTAGGATATATAGTGGCCGAGTTTCCTGTTT TCGCCACTTCAACTAGACCAACTAATCGAATCATTTTCAGTCAAATCTCTGGATTCTGTCCGTGG CTTTTCTCTTCCTGTTCACTGCATTTAACGGACTCCAAAATCTTCAAACTTCCGTCAATGGAGAT CTCGGATCTGATAGTTTAGTGTAAGAACGTTTTGAATTTCAATTTGAAAAATAATAATTTTTCAG AGCCCTATATTTATCACTTGCCATATCATCATTATTTGTTCCATCATTTATGATAAATCGCCTCG GGTGCAAATTAACATTCCTTATTGCAATCTTCGTGTATTTTCTATACATTGTCATTAATTTGAGG CCGACGTAAGTTTTTGCGTTTTTTGAGCGCTTGTAACTCAGAAACTAAAATAGTTAGCAAAAAAC TGTCAACTAACAAAATGTTAATCGATTTTTGATCTACATTTTGCT Found at i:3649084 original size:3 final size:3 Alignment explanation
Indices: 3649076--3649088 Score: 26 Period size: 3 Copynumber: 4.3 Consensus size: 3 3649066 GTACTCCTCG 3649076 AGA AGA AGA AGA A 1 AGA AGA AGA AGA A 3649089 CACAGTTTTC Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 10 1.00 ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00 Consensus pattern (3 bp): AGA Left flanking sequence: Indices 3648576 -- 3649075 CTTTTAGGAATGTGCGGATTTTTAGCAATTGAAAATTTCGATCACATTATTGTAAGGCTGATTCG AAGAAATTAATTTTTTCTAATTTTAAATTTTCCAGAAATTTTGGCATCACTTAATTCACACGTCA TGTCCAGAGAAGGAACCGTTGGATGATAGAAATTCAGATTTTGAATGAAAATAATTAAAAATCAA AAAAATCAGTTAATAAATTCGTACTTTATGTTTTATTAAAAATTCGAAAAGTCGAGAAGTATAAC AAAATGCAGTAAAATGAGAAATATGTGATAAAAATTAATAAAACGTGGCGGGTGGCTAATTGAGT TTCAAATTGCTAGACTCTGCGTTTTTCTTGAAAATTTTCAGAATTTCCAGTCCATGCTCAGCCAT CATTTCGGGACTCGACATTCCGGTGTCGTAGAGAGATTTTAGAAGAAATCTGGAAAAATTTAATA GGATTAAGCCGTATGTGTCGATTTACGCAAGTCGTGTACTCCTCG Right flanking sequence: Indices 3649089 -- 3649588 CACAGTTTTCGGCTAAAATTCTTGATTTGGAACTGTTTGAGCTAATTTTTTCTGTATTCGAGTTT AGAGCACCGTTTTGTAGTTACAGTAGTTTTCGTGACGGGACCCAAATTGGTTTAGCACCCGTCGA GCTGTATTCAAAATTCCTGCTGAAAATAGAAAAAGGATTTTTTAATCATGTTTTCTATACTTTTT TTGTTTTTTGAAGTTTTTTACAGCAAAAGAATTGGCGAAGATGGTTCAAAATAGATCAAAATATA CCCAAAAGTTGTGAATTTTTAAAAATAAAATGCAAACTTCTCTTCGAGGAGTACACTTTTTATGT TGGGAATTTTCCTCACGTCAGAACATTTTTCTTATCACCAGGTGTGCATTGGATATTCTTATCAG CCAATACTAATTTATCATGAACACTTTGAGATGGCTGAGCGACGGTTGGACGGAGACAGAATGTC GTTCGGAAATTTATCATTGGACGGTAGAACTCTAATGCACTGAAA Found at i:3653271 original size:6 final size:6 Alignment explanation
Indices: 3653260--3653274 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 3653250 GAAGACCTCG 3653260 TTCGAA TTCGAA TTC 1 TTCGAA TTCGAA TTC 3653275 TTCTTCTGAA Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.27, C:0.20, G:0.13, T:0.40 Consensus pattern (6 bp): TTCGAA Left flanking sequence: Indices 3652760 -- 3653259 GCGCCACGAAGAAACAATTCGATCAGACTGTCGCGATTCACCCAACTTCTGCCGAAGAGCTCGTT ACTATGCGAGGAGGTGTGAAGCCGGAATAATTTTTTATTTATTTATTACATTTTTAAATTTGGAT CAATTTCTTTTGACTTTCTTGTAGATAAAACATTGCAAAATTTAAAATGCATGGCAAAAAAATTA TTTACAGGTTATGCAAAAAAATCTAATTATGGTGAGTGCTACATATTAACCCGATGGGTAGATTT TGGTAGGAAAGGATTTTCAGAATTAAAACTGCAATTGAGACTATTCGAGAAGCTCATATTCGTCA TCGGCGGCCACTTCTGATTTTTTAGGTTCTCGTCGCCTCCGTCGGATGGTTTTCTGCAAAATTTG GAGTTTTTTGGAAATTATTAAAAAGAAGAAAAAACTACTTTCGGAGCATCCAAATCGAATTCCTC ATCACTGGATTCCGATCCATTGATTGCTGAGAATTGAAGACCTCG Right flanking sequence: Indices 3653275 -- 3653774 TTCTTCTGAAATTTATTAACTAAAATAATTTAAAGAGTCTCTGAAAATAACCTGGAATCGGCGAA GAAGACAATTCCGATTGAATATCTTCATTATCATCATCATCCACATGATTCTCATCGAGATCGGT TTCATCGTTCACTTCTGGAAGAAATCCTTCGAGTTCCACATCGCTTTCTTCTGAAAAATCGATAT TTAAAGTAAAAAATTGCTTAACAAAGTGAAAACGCGCTCCAATGCCAACTTTATATAGTCCACCC TATTCTCGTGGGTCTCGCCTGGAATTTCTAGCTTTTTGTCGTTTTTTAAAACATTTTTCGGTAGT TTTAATCATTTCTATGTCAAAATTGGTTAATTAAAAATTTTTTAGATTCATTTTTACATGGAAAT CAGAAAAATAGAGGAAAAGTGTAAAAAGCAATTTTTACCATTTTAAAAAATTTTGTCTACTCCTT CGTTTCTCGTAAAAAAGTTTTTTTTTCCGAATTAATTAACTCGTT Found at i:3653861 original size:5 final size:6 Alignment explanation
Indices: 3653845--3653860 Score: 32 Period size: 6 Copynumber: 2.7 Consensus size: 6 3653835 TAAAAAGCCC 3653845 TTTTTA TTTTTA TTTT 1 TTTTTA TTTTTA TTTT 3653861 AATGTAAAAA Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88 Consensus pattern (6 bp): TTTTTA Left flanking sequence: Indices 3653345 -- 3653844 CAATTCCGATTGAATATCTTCATTATCATCATCATCCACATGATTCTCATCGAGATCGGTTTCAT CGTTCACTTCTGGAAGAAATCCTTCGAGTTCCACATCGCTTTCTTCTGAAAAATCGATATTTAAA GTAAAAAATTGCTTAACAAAGTGAAAACGCGCTCCAATGCCAACTTTATATAGTCCACCCTATTC TCGTGGGTCTCGCCTGGAATTTCTAGCTTTTTGTCGTTTTTTAAAACATTTTTCGGTAGTTTTAA TCATTTCTATGTCAAAATTGGTTAATTAAAAATTTTTTAGATTCATTTTTACATGGAAATCAGAA AAATAGAGGAAAAGTGTAAAAAGCAATTTTTACCATTTTAAAAAATTTTGTCTACTCCTTCGTTT CTCGTAAAAAAGTTTTTTTTTCCGAATTAATTAACTCGTTTTCAATAATTTTTAGATTAATTCAA ACAGGAAAAATAGGGTTGAAAAAAAAATTTTTGTCTAAAAAGCCC Right flanking sequence: Indices 3653861 -- 3654360 AATGTAAAAAATGATCAAAAAATCGCTTTTCCGTAGTGTAAATTTCCGTTTTTTTCCAGACGAGA CCCAAATAAAAGGGGCAGATCGATGGGAGTTTGCATTGGAGCGCGTTTCATAAGACGCACCACAA AATGGATTTTTCTCGGGAATATGATCGATAACTGTCTCACAGACTGGGCCAATTACGTGGATTAA TGCACTTGTCTCGATGATTTTATATCGACTATGGAGATAATTTACAATGGGCTGAAAAATTGAAT TTTTAAAATAAAATTAAAAAAAATTACCTCCAGGAGCAAGTGGTACACAAAAATCGAGACCTGCT TCCCCACCTCAACCATCAGACAACAAATTGGCCAGAGAATCGAGTCTCGCACGGAAATTGCAATT CGATGAAGGGTGTCGCGGAGCCAGCAACGGAGTTTTTCAAATTGGCACAATAGGAATCTGGAATT TTTTTGTTTTTTCTCAATTACTTTAAAAGTATAGAATAATGAACC Found at i:3657783 original size:5 final size:5 Alignment explanation
Indices: 3657773--3657785 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 3657763 AAAACATAAA 3657773 AAAAT AAAAT AAA 1 AAAAT AAAAT AAA 3657786 TAATTTATTC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15 Consensus pattern (5 bp): AAAAT Left flanking sequence: Indices 3657273 -- 3657772 ACCACAAAAAATATAGAAAAGTTGAAATTGACTACAGTAACTTTAAAGGTACACACACTAAAACC AACTTTTGCTGCGAGACCCAATCTCTTACCAAAAAGCCGAATTAACAGCCATCAAATATAATCCA GTAAGCGGATTCCTCCATTCGATAGTTTCTCGATAGACTTGATGAAGTCTCCGGCCACTTTCTCG TATCCGTTCCATCATTTTGGAGTTTAAATTAAAATTTTAAAATTTCAACGAAAAACCAAAAAAAG AAATCGATAACTCTCTTCACATCTGTTATTATTTTCTTTTTTGTCAACCTAAAAACAGAACAGTT GTTTCTTTTTTTCTTTGAAACTCATAAGAGATAGAATGGGAGCGATGAGAAAACGCTTCGGGAAT TATTGAATTATTGCGAAATCGGCATTTTTTTACAAATTTTTTTATGAGATCTGGAATCTGGAAAA AAAGAGAAAAAAGATGTTAAATAGAATCTCGGATCAAAACATAAA Right flanking sequence: Indices 3657786 -- 3658285 TAATTTATTCCCATCTGCTTCGTTTTGAGGAAGAGCTGCTGCTCGAAGAGCCACCAGAAGCTGAA GAAGCCTGTTGCTGTGCAATCTTTGCATTCAATTCATCCACTTTCTTTTTCCATTCTGGTCTTGG ATCTGATGCTACTTGCTGTGGAAGATTTGAAGATTCATTTGTAGGTCGTTGAAATGTTGTTTGGA ATGATTTCTGAAATGCACTTTTGAGCATTTGGGCTCTATTGGCTCCGGAAGCTGGGCCACTGCTT GAAGAGGAGGAGGAAGAGGATGACGTGGCAAAGCTGAAAATTCGATTTTTATGTTAAATGTGGTG GGGTGGATGAAATTATTTTTTTAAATACTGTCATTTATTAGAAATTTTTTTTGTTGAATTTTTTG GAAATTGTTGAATTATTTTTTTAATTCCTATTCTATTTAAAACTCAATTTCCCACATTTTTAAAC ATGCTCCGTATAAAAAACTTGATAATTTCTCTGAAAAATTTCCTA Found at i:3659834 original size:6 final size:6 Alignment explanation
Indices: 3659823--3659835 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 3659813 AAAGTCAAAA 3659823 TATTTT TATTTT T 1 TATTTT TATTTT T 3659836 GTTCCCGAAT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85 Consensus pattern (6 bp): TATTTT Left flanking sequence: Indices 3659323 -- 3659822 TACTTCTTGTGATACACTTTCCAGATTTTTGACCAAATGTCCGACCATTTCAATGTCTTTTTCAG TAACAAGAGTGTATGCTGTTCCTTTGTGACCAGCTCTTCCAGTTCTTCCAATTCGATGAACATGA GTATCGATGTCACGAGCCATATCGAAATTGATTACGGTTCGAATTTCAGAAATATCCAGTCCGCG TGCTGAAAATTTAATTTTTTGATCGGAAAATTAGGGAAAATTGATTAAAAACCTTAGATTTTAGA TTTTTAGAACTTTAAAAATTTTTTTACGGTTTCCAAAATTTTCAAAAACTTGAAAATCGCCAATT TTTAAATGTTTTTATTGGAGAAAATATTTGTTTTTTTTTTCCTATTTTTTTCCGAAAAAATATAT TCAATTTTTTAAAAAAAATTTCAATAAATCGAGCAATTTTTCTCGACTTTTCGATGTAAAAAAAA ACGAAACTTTAAAAGATTTTTAGGAAATTTTTCAAAAAGTCAAAA Right flanking sequence: Indices 3659836 -- 3660335 GTTCCCGAATTTCGTTTTTTTTTTCAATCAGATTTTTTGGTTAAAAATCTATATTTTTTTCTTTT TTTCCGAAAAAAAATTAATTTTTTTGGAGAAATCTCAATAAATCGAGCAATTTTTCTCGACATTT CAATGTAAAAAAAAAACGAAAATTTTAGATTTTTTCATAAATTTGCTAAAATTTTGAAAAAAGTC AAAATATTTCAATTTTTGTTGTCTTAATTTTTATTAAAATTTAATTGTGTTAAAAAATCCCGAAT TTCATTTTTTTTGTATTTTTTTCTGATTTTCCTGTTAAAAATCTATACTTTCTTTCGTTCCAAAA ATAATTTCAATTAAAAAATTGGGCGATTCTTTTTCAATTTTTTCAATTAAAAAAAATTCTCAATA TCCGGTTCTTTTTTGATTTTTGTTAACATTTTTTATTTTAGACAACCGAAAATAGGATTTTTGAT TTTACAAAAAAATAAATTAATTCACTTTTTACAGAAATATACTTT Found at i:3664824 original size:6 final size:6 Alignment explanation
Indices: 3664813--3664827 Score: 30 Period size: 6 Copynumber: 2.5 Consensus size: 6 3664803 TCTAATCTTC 3664813 TGGCAG TGGCAG TGG 1 TGGCAG TGGCAG TGG 3664828 GGAGCAGTTG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 9 1.00 ACGTcount: A:0.13, C:0.13, G:0.53, T:0.20 Consensus pattern (6 bp): TGGCAG Left flanking sequence: Indices 3664313 -- 3664812 GAGGAAAATGATGTTTAAACATGTTTAAAAAGTCGTTTAATCGCAGTCACAGGGAGAATGTGGGC GTGGCCTTCGCTTGCAACACGCCGCGCGCATTTCGCAACGCTGCCGCACGTAGTTTATGTATTGC TGAATTGTTGAAGTACGTAACTACAGTAAGAAAATCATTTTTTCCACATTGAAATATTTCAAAAA AAAAAGAGAGAAAATATTATATTTTGAAATTATAAGAAATGTGGGTAGAAAACACAAAAACTATG ACCTTAAGGTCGCACGAGAAAATTATTAAAAATAATTACAACGGAAAAACTACGAGAAAATTACC CTTTCACCATGAAAAAAAAACAATTTTTATTTTCTCCCGCGACTTTAAGTTCACAAAAGTTTTAA AATATTAGCGTGGCACACTAATCCATTAGTTAAACTCTAAGCTCTTGCTATATAAGGGGCAGAAA TACGGTTTTCAAATCAGTACGAAGTTTTGGAAACTTCTAATCTTC Right flanking sequence: Indices 3664828 -- 3665327 GGAGCAGTTGGCCCGTGGATGGCCTGTGGGTGGCCTGTGGATGTCCTGTGGATGTCCTGTGGATG GTCAGTGCATGGTCGGTGGTGGGATGTTGCCGAACAACCAGCGGCATCAATGGTCGTGTCGGAAG CCGAGGCCTCGGACGAAAAACACGTGGATCCGGATGGAATGGACAGGATCGGGTGGTAGCAGCGG ACAGTGACCAATATTGAAACGTAAGTTCGAATGCTACTTTTCAGACATTTCTGAAATAACTTTAA CAAGAACGAAGACGTACGCTAACTATATGTTAACTCGTCTTTTTGTTTTGAAATTTGAAGTAATT TTGAATACAACAGTGGCAAAAGTTAACTGAGTGAGCAATTATTCTTTGTTTTTTGAAATTAAAAA GTGTGCATAACAGTTCCTAAACAATTCGAATTTCAGCGTGGCACACTGAGAATGTGAGGAGTCAT GGAGCACGTTGATGAGGGTGGAGCTGGAACGATCGGTTGGACACT Found at i:3666389 original size:4 final size:4 Alignment explanation
Indices: 3666380--3666392 Score: 26 Period size: 4 Copynumber: 3.2 Consensus size: 4 3666370 GGTTCAGAAA 3666380 AAAC AAAC AAAC A 1 AAAC AAAC AAAC A 3666393 TTTTTGTCGC Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 9 1.00 ACGTcount: A:0.77, C:0.23, G:0.00, T:0.00 Consensus pattern (4 bp): AAAC Left flanking sequence: Indices 3665880 -- 3666379 AGAGGGACCTCGAGAAACGTAGCGACTGAAAGATGGGGCGGGGGCAGTGGAGAACGTGGATCAGG ATAGATTGGAGCGATCGGGACGGTGTGCAAATGGCAATGGAGTCAGTCAAGGATGGACTTTAGTC CAACAAAGGTAACGAGGGTTTGAAATGATTTTGAAAAAAAAGTAAAATAAAATTTTTGATGAAAA TTAAAGACACTAATAAAATATTATTTTTTATTCGTCTTTTCCAAATCAGTGTGTCCATTTTTAAA GTGTCTACTGGAAGCTTCATTTTTTGAATTCCATAAATTAAAATTTCATTTCCAAATCAGTGTGT CCACTTTTAAAGTGTCCACTGGAAGCTTCATTTTTTGAACTCCAGAAATTTAAGTTTCATTTCCA AATCAGTGTCCCGTGGTGGAAAAATTTTTTTTTCCTTTTTTTTGGGATGAAAAAATTCGCAAAAA AAATTTTTCATCCCAGAAAAAAAAGGGGGAAAAAAGGTTCAGAAA Right flanking sequence: Indices 3666393 -- 3666892 TTTTTGTCGCTGGATGGACTTTAGTCCAACAAAGGTAACGAGGGTTTGAAATGATTTTGAAAAAA AAGTAAAATAAAATTTTTGATGAAAATTAAAGACACTAATAAAAATATTATTTTTATTCGTCTTT TAATTTTACAAAATTTTCAATAAAAATTTAAGACACTAATAAAAATATTATTTTTATTCGTCTTA TAATTTTAGAAAATTTTCAATAAAAATTTAAGACACTAATAAAATATTATTTTTATTCGTCTTTT AATTTTAGAAAATTTTCAATAAAAATTAAAGACACTAATAAAAATATGATTTTTATTCGTCTTAT AATTTTAGAAAATTTTCAATAAAAATTTAAGACACTAATAAAATATTATTTTTATTCGTCTTTTA ATTTTAGAAAATTTTCAATAAAAATTAAAGACACTAATAAAAATATGATTTTTATTCGTCTTTTA ATTTTAGAAAATTTTCAATAAAAATTAAAGACACTAATAAAATAT Found at