TRAP (Tandem Repeats Analysis Program) TRF Version 4.00 Sequence: CHROMOSOME_V Parameters: 2 5 7 80 10 25 1000 Pmatch=0.80,Pindel=0.10 tuple sizes 0,4,5,7 tuple distances 0, 29, 159, 1000 Length: 20922231 ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32 Found at i: i:18117260 original size:6 final size:6 Alignment explanation
Indices: 18117249--18117264 Score: 32 Period size: 6 Copynumber: 2.7 Consensus size: 6 18117239 AATTTTCTGT 18117249 TGTCCC TGTCCC TGTC 1 TGTCCC TGTCCC TGTC 18117265 ACACAATGTT Statistics Matches: 10, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 10 1.00 ACGTcount: A:0.00, C:0.44, G:0.19, T:0.38 Consensus pattern (6 bp): TGTCCC Left flanking sequence: Indices 18116749 -- 18117248 ATTCTAGTGTTTCTAGTGTGTTTTTTGTAATTTTTTGATGAAATAGCGTTAAAATTTGCTAGTTT TCCCCACAATTTTGTGAAAAATTCTATTTTTTCTACCAAATTTTTTAAAATTTCCAAACCAAAAT TTCCGAATTTTTTTCAGGCTACACAGCAGCCATCTTCAAAATGCGTGAACGTCAGCAGCTCGAAG CGATTCGTCATATTCCACTAAATCGAATTCTCCTGGAAACGGACGCCCCGTACTTCAGACCACCC TGCTTCGAAGGAGTCGGCCCGCGAAATGTCTGTCTACCGGGAATGGCGATTGCGACGGCACGGAA AATCGCCGAGATTAAAGAACTTCCAGTCGATGAGGTGCTTCGTGCAACGTTTGATAATACTCGTC TTTTATACCAAATTCAGGCGTACTGAATTAAATTTATTTCTTCAAATTTTCGTTTTTTTTTCTGA TCTCTTCGAACTCGATCTTTAACTTTTTTTTCCATAATTTTCTGT Right flanking sequence: Indices 18117265 -- 18117764 ACACAATGTTTTACGGTTTTATGATGAATGTTTTTTCTCCTTTTTGAAAAAAAATTGTTGATTTT ACATTGATTTGACACATTATCAAAAACAAAATTACGCAAAAAGCTGTGAAGACACTAGCAAAAAA CACTAGCAGACCCATGGGTGTTTCAGAAACTTGAGAGATTTTTGTTAGATTTTGAAAGGAAAATT GATTGAAACCCGAAGTTTAAGGCAGTTTTTCATCGTGTTTTCGAGAAATTGGGTTGGAGTACTGT AGTCGACGAAGTACGCAATGACAAGTGTTTGTGTACTTGGCATTCTAATTGACGACACGGCCCGA GAAGTGGTACCTGTACGCAATTTGTCTACCGTATACCTGGACGTTTGGGCGCGTGTATCTCAAAA ACGGTTGGTCCAGTTTTTTTGTGATGCATATAAAAAATGTCCGAAATTAAATTCTAAATTTTTTG GACCAAAGCTTTTTTCGTTATCACGCGCCCAAACCTGGTCTATAC Found at i:18121667 original size:5 final size:5 Alignment explanation
Indices: 18121659--18121671 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 18121649 TGTCCAAAAA 18121659 TTTAT TTTAT TTT 1 TTTAT TTTAT TTT 18121672 CTGGCCTAAA Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85 Consensus pattern (5 bp): TTTAT Left flanking sequence: Indices 18121159 -- 18121658 GAACGGACGAAATCGGTCGAGGACAACGATTTCTACAGCGAAGGCAATCCGCGAGGAGGAGAAAC TCCAGTTCAAACCGCCGCCAAGCTACAGAAGGTCGCATTGTCGCGCCGAGACCCGTCGTCGTTAA AGGCTGCGCCTTTAACCCGGAAATGCCTATATAAGGAGAGGACGACGCTCATTTGTGATCATTTC TTAACTCTTTAACCCGTTACTTGTCGTTTTCCCTTTTCTCTCGTTTACTCTGTTTCGACGATGCA ATTCGTCTGTTCCCTTTTACTTAATAAACCCTTATAAGATCGATCAGTGTGCGTGAGTGGCAGTT ACATCCTATACCTTTATTGGTAGCAGCGAGCGGACCGATTTCGTAACATTTCGAGAATCCCAAAA TTATTTCGTTTTCGAATTCCAAATCCTAAAATCAAATTCAACTTTCGCATACCTAAAATTAATTT AAATCGTATTTTTTTCCTAAAAATTAATTTAATTTTGTCCAAAAA Right flanking sequence: Indices 18121672 -- 18122171 CTGGCCTAAAATTTCCTTTTTATTTTTCTTTTTAATGGCGATTTGCGTTTGGTTTTCTGCTTTTG TTTTCATTCTCGATGTTCTTTTTGGCGCTTTCTCTCTTGTTTATCTCGGTTTTCTTACGATCCAC CGTTACCATCTCTCGTCACTTTTCGTATCTTTTCGTTTATTTTCGTAAATCTTCTGGAACATTCG TTTTGTTATTTATGCTCTCCCTCGTATTAGCCGCGCAACTTTATGGGATTAAGCTGTCGTTCATT GTTTACGTGATTTAAGGTGTATAACGCGCTTGTTTCAGGTCATAGGTTAAGCTTAGCGGGGATTT CAGAGGTTCTGGTAGAATTTCTTTCTTTTAGGTTGCAGGTTAGGCTTCTAGTTTAGGTAGCAGGG TAGTCTCCTAGTTCTTTTAGCAGGTTAGGCATCTAGTTAGATTGCAAATTGGGTTTTAGTTTCCT CTGAATCCGCTGACCGTTAAGAAAGTTCGCTTTAAATGATCCCAC Found at i:18122463 original size:4 final size:4 Alignment explanation
Indices: 18122456--18122468 Score: 26 Period size: 4 Copynumber: 3.2 Consensus size: 4 18122446 AGTATCTCTC 18122456 TCAA TCAA TCAA T 1 TCAA TCAA TCAA T 18122469 AGATCAAGTG Statistics Matches: 9, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 9 1.00 ACGTcount: A:0.46, C:0.23, G:0.00, T:0.31 Consensus pattern (4 bp): TCAA Left flanking sequence: Indices 18121956 -- 18122455 CGCGCTTGTTTCAGGTCATAGGTTAAGCTTAGCGGGGATTTCAGAGGTTCTGGTAGAATTTCTTT CTTTTAGGTTGCAGGTTAGGCTTCTAGTTTAGGTAGCAGGGTAGTCTCCTAGTTCTTTTAGCAGG TTAGGCATCTAGTTAGATTGCAAATTGGGTTTTAGTTTCCTCTGAATCCGCTGACCGTTAAGAAA GTTCGCTTTAAATGATCCCACATTCTTTTGTTTCCTGTACGTTTTAGTATACCTTAGGTTTTTAG GTAATCAATAGTCATGTATCCAACTTCTCCGCAGCGCAGTCCCCTTTATTGTAATGTTCCCGGTG TTTCGTTACGATGTGATTGTAGTGCAAGGATCGATGCTCTGCAGGCGAGAGTTGCTGAATTGGAA GATGCTCTGAAGCGTCAAGGTAAGGAAACCCCCAGAAATCCCGAGGTGAAAGGCCTAGGTTCGCC TATGGCCGCCCCTCATTGGGACTCTGGGGAGGGTAAGTATCTCTC Right flanking sequence: Indices 18122469 -- 18122968 AGATCAAGTGTAAACCCAAAAGATGTGTCGTCCAAAAGTAGTGAAGATTCTACTTCTGGAAAAGT TTCTTCAAATCCATTGGATCTCCTGGTTCGTGATGATGCCGATGCGATGATGGAAGAAAGAATTC AGTTAAATATAGCTCAAGGAGCACAGCCGTTTATTGGAATGTTTGGATTCAAGTCTGCAAATCCG TTGCCGTTGTTCATGGGAAACGTCTCGGATGACTTCACGACGTTTGTGAGAAAATTCAAGCATCG GTTGGCAGCATCAGAGGAATTGACACCGGAACGACAAAGGAGCCTATTCCTCACGTTTTTGGAAA ATCGTGCAAGAAGTTCGGCCGAAGCAGTCATTGTGGCTCAACCAACAATTACATTGGATGCACTC ATCGTGGAACTGGCCGCCTTGTTCGAGAATGCTGTGGTGCAAGAGCACAGGGAGAATCAGTTGAG ATGCTGTACGCAAAATGAAGGTGAGTCGGTTGCCGATTATTTTCA Found at i:18125815 original size:6 final size:6 Alignment explanation
Indices: 18125804--18125821 Score: 36 Period size: 6 Copynumber: 3.0 Consensus size: 6 18125794 CGAACATTTT 18125804 CGAAAA CGAAAA CGAAAA 1 CGAAAA CGAAAA CGAAAA 18125822 AATTCGTTTT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 12 1.00 ACGTcount: A:0.67, C:0.17, G:0.17, T:0.00 Consensus pattern (6 bp): CGAAAA Left flanking sequence: Indices 18125304 -- 18125803 AAATAAATACTAATTTATTTGCCTGTAAATTCTCTCTGATAATTTACAGAAAGAACGGACGAAAT CGGTCGAGGACAACGATTTCTACAGCGAAGGCAATCCGCGAGGAGGAGAAACTCCAGTTCAAACC GCCGCCAAGCTACAGAAGGTCGCATTGTCGCGCCGAGACCCGTCGTCGTTAAAGGCTGCGCCTTT AACCCGGAAATGCCTATATAAGGAGAGGACGACGCTCATTTGTGATCATTTCTTAACTCTTTAAC CCGTTACTTGTCGTTTTCCCTTTTCTCTCGTTTACTCTGTTTCGACGATGCAATTCGTCTGTTCC CTTTTACTTAATAAACCCTTATAAGATCGATCAGTGTGCGTGAGTGGCAGTTACATCCTATACCT TTATTATACTATCCACACCGGAGAGCAAAATTTCGGCGAAAGTTCGAAAGAAAGTGGAAAAAATA CCAGAATTAAATAAAGTCGTTTTATTTTCGTTTTTCGAACATTTT Right flanking sequence: Indices 18125822 -- 18126321 AATTCGTTTTCGTCAAAACCCCGAAAATAACGAAAAAACGAAAACGCGAAAACGAAAAAGTCCCA GCCCTGCTGAGTATCTTTCTATCGCCGATGCCATTGAAATCAGAGATGTTAGATTTTCAATGTTC ATTCAAACATTTTCTGATTTTATTTCAGATTCTCTTCAAATCAGCCGTTTTTGAGTCTGTAATCA TCATAACTAAACAAATCACCGATGAGGACGTCATGAGAGTTTTCGATCCAAATGATTTGTTTAAC CAAAGTTCCATTGTCTATGACGCTGGAAACGGATCCAAATTCTGCATCACCCACCATGATCATAG AATTGACGAAAAGAAGGAATAAAATGAATTGTTGTTCATTCGTATTTTTTTCCTTAAAATAAAAT GTTTTGGTGAAATTCGTCGAAATTTGTTGAGTTTTTTCGTATTTTTTCGAAAATGAAATACCTTT TCGGAATTCAAATTTGTACAGGCTGTGCTTCTTCAGAAATTTCAA Found at i:18127801 original size:6 final size:6 Alignment explanation
Indices: 18127790--18127802 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 18127780 ATCATTTTTG 18127790 TTGTTA TTGTTA T 1 TTGTTA TTGTTA T 18127803 GAAAAATCAC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.00, G:0.15, T:0.69 Consensus pattern (6 bp): TTGTTA Left flanking sequence: Indices 18127290 -- 18127789 AGCAGTCCTCAGAAGTATTACAATTCCGTACCATCTGAATTTGAGCACCCTGGTTGAAATCTTCA AATTGGAGCAATGGAAAATGGCAAAATCAGCTTCGATTAAATCATGCCAACGTTCGCGTTTCCCC TTCGAAAATCTCGTTCATCTTTCAAAGTTCAGATTACAGCTGGGTCATTTTACGGTCGCTGATGC TATTAAAATCCGCGATGTTAGTTTTGCATATTCTCGTCCCCCAAAAATGTTTTTATATTTTCAGG TTCTCCTGAAATCGGCCAATTTTAACAGCGGAACTATCATTGTGTTTGACCCTTCCATAATAGAT ATTCTGCGTGTTTTCGATCCAAACTATAACGTCATGGAGGATAAAGGTTTCTATAACGATGGAGA AGGAGCCAAATTCCTCATCACACACAATGATCATGAAATGACAATCAAACGAATTCTATAATAAT CTAAAATTCCAATTTCTAAAAATTCAGAATTTTGTATCATTTTTG Right flanking sequence: Indices 18127803 -- 18128302 GAAAAATCACGTTTTCCAAGTTTTTTCCGCATTTTTCGAAGGTTTTTCACCTCAATTTTCCTACT TTTTTACGTTTTTCACAGTTTCGCATTGAAATTGGAATTTTTCAGAAATTGGCCGATCTACTTGC GGATGAGTCGGATTCGATGAAAATGTGAGAATTCAGCTTTGGAAATCGTCAGAAACTGAAATATT TGTGAAAAATCTCTAAAAACCCATAAATTTCCACTAAAAATCAAGTTTTCTCCCAAAAAATAAAT TAAAAAAGCATCGTGGGTACGGTAGACGGCAGAGTACGCAATGGCAAGTGTTTGCGTACATAGCA GTGTATTTGACGAGCAACGTATTTTTTTTGTTTCGAAATATAACATTTTAGTCGATTTCGCGCGT TTTCACTCAGTTTTTGACTGAAAAACAAAAAAAATCATGAAAATAAACTTTTTTAATTGTTTTAA AAGCAAAATTACTGTTTATTTTCAGAAAAATCGATATGGCTTTAC Found at i:18128826 original size:6 final size:6 Alignment explanation
Indices: 18128815--18128827 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 18128805 TGATACTTCG 18128815 GAAGTT GAAGTT G 1 GAAGTT GAAGTT G 18128828 TTCTGAAAGA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.31, C:0.00, G:0.38, T:0.31 Consensus pattern (6 bp): GAAGTT Left flanking sequence: Indices 18128315 -- 18128814 CGAACGCTGTGACGCATATTCGGAACAATAAAATTGCTCTCCGAGCATGCATTTCCTATGAATAT TTGATTGGAAAATCAAGCTTTGAGGCCTACAAATCATTCTGCAAGCAGATGGGCGATGATATTAT GGAATATGGAGAATTCGATTTTTGGTTCTATACACTTGGAAAAGAAGGAGTCGCATTGGATAGTG AGATAAGGTATTAAATATTCAGTTATTATACCAATATTTCCAAAATTAATTGATTTTTCAGTTGG AATCCGAAATCCAAATTGCTTGGTGACATGCCGAATGAGATTCTCGTCAAGATTATGGACATCCA GGATCCGATCAATCGGTAAATCAAGCATGTCTTTAATAATTACAAGCATGTCTTTAATAATTACG AATCACAACCTTTCAGAATCGTTATTCGCAAGGTTTCACAACGATTTCGTTCGCTGTTTGATGTA ATGGATCCGGGATTCAAATCGTTCAAGTGTGTGCTTGATACTTCG Right flanking sequence: Indices 18128828 -- 18129327 TTCTGAAAGATAACTACACGCCGCGCGACGACTCCTATTCTGAAGCTGATGACTATAACTCCGAA TATGAGGATGATTATGATGATTATGAAAGACTTCTGAAGGATACGATCATATACGATGAAGATAT TCGTGAAAAATCCCATGTAAACGTCAGATGTGGAAATCGAGTTAAACAAATGAAAGACGAATTGT ACTATGAAAGAGCTGCCAAGGATCTGCTAGTGATTCTGAAGAATCCGAAGCTTCGTCTTGAACAG TTCATTTTCAAATTCGGTAGTTCGCTCGCATATAGTGATCTCAATCAAGCTGAAAATTTCGCATC GATTCTCAAATCATGCTCACCGATTCACGCCAAACAAGTCAGAGTGGAGTATCCTGACCTTGCAT TTGATGCATCGAAAATTCTATCGCTGTTCCAACCAAAAGCGCTCACTAACATCAAACTGAAATGC TCTAATTTGGCTGATATCTCTGCAATCTTCGAACTGGAACAGTGG Found at i:18129653 original size:6 final size:6 Alignment explanation
Indices: 18129642--18129654 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 18129632 CACCAACAAG 18129642 AAGTTC AAGTTC A 1 AAGTTC AAGTTC A 18129655 TCATCGAAGC Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.38, C:0.15, G:0.15, T:0.31 Consensus pattern (6 bp): AAGTTC Left flanking sequence: Indices 18129142 -- 18129641 AATTTCGCATCGATTCTCAAATCATGCTCACCGATTCACGCCAAACAAGTCAGAGTGGAGTATCC TGACCTTGCATTTGATGCATCGAAAATTCTATCGCTGTTCCAACCAAAAGCGCTCACTAACATCA AACTGAAATGCTCTAATTTGGCTGATATCTCTGCAATCTTCGAACTGGAACAGTGGAAAAATGCG AAATCGGTGGAAATTAATAGTTTCACCAAATTTCCAATTGGAAATCTCTTCCATTTGTCTCAATT CTCAGTCAAGCTGGAATCTTTCTCCGTTGACGATGCAATCAAAATTCGAGATGTAAGTTAATTTT TTAATTTTTTTCGTTTTATTTATAATTAAAAACAATTTTTTTCCAGATTCTCTTGAAATCTCCTT CATTCCAAAGCGGCAAATTCACTTCATATTCGTCGAATTTTCAAGAGATGCTGAAAGTCTTCGTG CCACGTTTTGACGGCCTGAGTGGCTCACTTGTATACACCAACAAG Right flanking sequence: Indices 18129655 -- 18130154 TCATCGAAGCTCACAGAGGCTTTATCAAATTCGAGAAAGTCGGAGCAGCTGTTTAATTTTTTGTT TAACTGTCCCAATGTCCTAATGTTTTATTTTTTTGTTGAAAATTTAAATTCTGATCTGTTACAAC TTCATTCAATATTTAATTTGTTCAAGGGCTATAGCTTCCCCTAATTTTTTTTTAATTTTGAGCAT TTTCGCAAATTTTCTCGTTTTTTGCACTTTTATTCCAAAAATAACGCGTTAAAAAAAATGTCTGA AAAATTGCCTGAGAGTACGGTAGACAAACGAAGTACGCAATGACGAGTGTTTGCGGACTTGGCAG TTCACCCGACGCGCAACGGATTTTTCGAACCAAAATTTCAATTATTTGACCAATTTCGCTAGTTT TTTCTTTCTTTTTTCAGATTTGAAATCTTGAAAATGTTCATTTTTCAGGTAAATCGATTGATCTG AATATGGCTTCATCGACAGAGAATCCGAGAAGCTTGGAAACTCGG Found at i:18131440 original size:6 final size:6 Alignment explanation
Indices: 18131429--18131441 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 18131419 GATTTTTCTA 18131429 TTTTGT TTTTGT T 1 TTTTGT TTTTGT T 18131442 ACACCATGAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.00, G:0.15, T:0.85 Consensus pattern (6 bp): TTTTGT Left flanking sequence: Indices 18130929 -- 18131428 TGTGGAACCAGGAAGACTTGAAACAATTCATTTTATCGATCCTTCATTTGATAATAGTAATTCTG AATTGTTTGATGCTTTCATTCAATCAGAACACGTCAGAAAAGCAAAGGAGCTTCATATCACAAAT ATAGTAGCATATTCTTTTCCAATTCAAAAACTCTTCCATCTCGAGAGACTCTACGTTACAATCGG CGTCTTCTCCGCACATGATGCCATTAACATCCGAGATGTAGGTTCAATTACTTAATATTGTTGTT ACATCTCATCGTATTTCAGGTTCTTCTACAATCAGTTAACTTCCAATGTTTTCATTTTTATGTTG AAAAAGCCGGATTTGATGTCGTCGAAATTGTGAGATTGTTTGACCCGAGCTATTCCGGCGATTCA GACGGAACAATCATCTATCGCGCATACAACTTAGTTTTCAACATTCATTTCTCCAGGCATCGTTT GCGCTTTGAGAAGCGTGTCACAAACAGTTATTATTGATTTTTCTA Right flanking sequence: Indices 18131442 -- 18131941 ACACCATGAATGATTATTAAAAAATGACACAGTTTTAGCAAAAAACTTCTCTTCGTATCTGCGGT ACCGATTTGCCGAACACCAATGTGATGTGCCTTTCTGAACACTTTTTCCCTTTTTTTCTAGATGT TTTCATATAATTTTTTTACTTTTCAGAATAAATATAGGAAAATTCAGAGGATGCGTACAATTTTG CCAATTAAAATTGAAATTTCCAAAAAAAAAATGTGCAAAACCACAATTGGCAGAAAGTTTTCAAT TTGGGCAATCGCTTTTTTTGTTTGTATCACCGTGTAAAGAAACTAAAGTTTAAAAAATTTATATA AACAACAATATCGATTTAAAAAAATAATACGTTTGGAACAAAACTATAACCAGACAAAAAAAAAC AGAGTGCAATTATTATACTAAAAACTACAAAATTAAACGCCGGCTCTTTTGATCCCAAAGCTTCT TTCTTCGCATTTGACGGCGAATTTCACATAATTCTGCTCAAAGAC Found at i:18134771 original size:6 final size:6 Alignment explanation
Indices: 18134760--18134772 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 18134750 GAAGAAAATG 18134760 TACGAA TACGAA T 1 TACGAA TACGAA T 18134773 TTCCCCCATT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.46, C:0.15, G:0.15, T:0.23 Consensus pattern (6 bp): TACGAA Left flanking sequence: Indices 18134260 -- 18134759 ATGATATGATTGACACTGTCCAAATAGAAGCCGATAACAAACTTGAAACCTTGGGTCTCGAAGCG AACTCCAGCAGGAAGTGGTTCAGAGTATTTTGGGTAGAATACTTTCAGAATTTCCATGAAATCAG GATTTCCAACAAAGATTTCAGCACCTTTAAAGCTGGGCTTTTTCATGAGAATCTGGAAAATTAAT TATTTTTTTAATAGTTATATTTTTTTTAGTTGTATGGCTATCCAATACTTATTAATATATTCATT ATTAGAAACTATCCGAAAAAGTATCCTCCAACACCCCTGTTGTATACCCAAAATTAGACAGTGAT TTCAAAAAAAAGATAGTTTCCAGTCGCTGGACAAGTCGGGCAAATTTCAAATTTTGACTAAGTTT AGGTCATTTTTTGAGACGTTTTCAAGAAGTTTTGCGATGAAATTCGGTGTTTTCAGGCAATAAAA AGATGCATTTTTAGTTAAAACGAACATTTTTAAACGAAGAAAATG Right flanking sequence: Indices 18134773 -- 18135272 TTCCCCCATTTTTAGTTAAAACGAACATTTTTAAACGAAGAAAATGTACGAATACGAATTTCCTC GAGGTATCCCGGTTCCAAGTACGGAAGAACGTGATCACTAGTATCACCGTAGGCATCGTTAAGCA CAACCGCAGTCACTCGAATGGGTTTCAGCTTTTTCAGACAATTCTCAACGAGTTCCGTGTACTCG TCGTCGCGGAGCATATTGTAGAAAGTGACATCGAGAACTTCAAGCGAGAATTTCGGATTTTGCAT GATTTGGCACAAGTCGGAGAGACCAGCTTTCAATGGGCATCCTTTTGACACGTGGATTTCCTTGT CATTATAGTTAAGTGTGAAGTCGTCCTCTTGATCCGAATATTGGACGTATTCAACGCTGTTCTCA TCAACATCATTAAAATTTATGAAAAAGGACCAATTGCCAATGTAAAAGCTAATCTTCTTGAATGC GAGGGCCCGGCTGTCGATGATGTCACGGAAGCGATGAGACACGTT Found at i:18134830 original size:6 final size:6 Alignment explanation
Indices: 18134819--18134831 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 18134809 GAAGAAAATG 18134819 TACGAA TACGAA T 1 TACGAA TACGAA T 18134832 TTCCTCGAGG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.46, C:0.15, G:0.15, T:0.23 Consensus pattern (6 bp): TACGAA Left flanking sequence: Indices 18134319 -- 18134818 GAAGCGAACTCCAGCAGGAAGTGGTTCAGAGTATTTTGGGTAGAATACTTTCAGAATTTCCATGA AATCAGGATTTCCAACAAAGATTTCAGCACCTTTAAAGCTGGGCTTTTTCATGAGAATCTGGAAA ATTAATTATTTTTTTAATAGTTATATTTTTTTTAGTTGTATGGCTATCCAATACTTATTAATATA TTCATTATTAGAAACTATCCGAAAAAGTATCCTCCAACACCCCTGTTGTATACCCAAAATTAGAC AGTGATTTCAAAAAAAAGATAGTTTCCAGTCGCTGGACAAGTCGGGCAAATTTCAAATTTTGACT AAGTTTAGGTCATTTTTTGAGACGTTTTCAAGAAGTTTTGCGATGAAATTCGGTGTTTTCAGGCA ATAAAAAGATGCATTTTTAGTTAAAACGAACATTTTTAAACGAAGAAAATGTACGAATACGAATT TCCCCCATTTTTAGTTAAAACGAACATTTTTAAACGAAGAAAATG Right flanking sequence: Indices 18134832 -- 18135331 TTCCTCGAGGTATCCCGGTTCCAAGTACGGAAGAACGTGATCACTAGTATCACCGTAGGCATCGT TAAGCACAACCGCAGTCACTCGAATGGGTTTCAGCTTTTTCAGACAATTCTCAACGAGTTCCGTG TACTCGTCGTCGCGGAGCATATTGTAGAAAGTGACATCGAGAACTTCAAGCGAGAATTTCGGATT TTGCATGATTTGGCACAAGTCGGAGAGACCAGCTTTCAATGGGCATCCTTTTGACACGTGGATTT CCTTGTCATTATAGTTAAGTGTGAAGTCGTCCTCTTGATCCGAATATTGGACGTATTCAACGCTG TTCTCATCAACATCATTAAAATTTATGAAAAAGGACCAATTGCCAATGTAAAAGCTAATCTTCTT GAATGCGAGGGCCCGGCTGTCGATGATGTCACGGAAGCGATGAGACACGTTTCGAATTGGGAATC TGAAAAAAATGTCGATATCACATTTTAAGGAAATCACGTGGTGTC Found at i:18135913 original size:1 final size:1 Alignment explanation
Indices: 18135909--18135924 Score: 32 Period size: 1 Copynumber: 16.0 Consensus size: 1 18135899 TTCCAAAATA 18135909 CCCCCCCCCCCCCCCC 1 CCCCCCCCCCCCCCCC 18135925 ATCCATAAAG Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 1 15 1.00 ACGTcount: A:0.00, C:1.00, G:0.00, T:0.00 Consensus pattern (1 bp): C Left flanking sequence: Indices 18135409 -- 18135908 TTGCATAGTTAAGAACGTGCTGACGTCACATATTTTTGGGCAAAAAATTCCCGCATTTTTTGTAG ATCAAACCGTGATGAGACAGCCTGGCACCACGTGGGAAATCCCTATTTTCTTTTGCCAGAAAATC GTGAACTGTGTTTCAGATAAAAATCAATGTGCTTTCTTCTGGAAAACTACTATAAATTCTCGTTT TCTTACATTTTAGCGAAAATTTTCTTGATTTTCCCTTGAACACAAAAGTTAAATTTGCGTTTTCG CAGAAAATTAATTCACGATCTGCGTAAATCGATATATTTTATATTCTCTGTTATTCTTTCTATTT TTAGTCATTAGGAACATTTAGTATTCACTAACAGCTCGATTGGCATCACACGGTCGAAAATTTTG TTGAGCATATCGTCAGGCAGCTCCAAAAGTTGACGACTTTTCGGATTGAATCTGAAATATTTTAA ATTATTTAATTTATATGTTTTTTTTTGTCAATTTTTTCCAAAATA Right flanking sequence: Indices 18135925 -- 18136424 ATCCATAAAGAATCGCTTCGCAAGTTTAAACTGCTCAGTCTTGATAACCCTGTCACACTTGGCAA GCCAAGAATGTGCCTCAAAATGAATATCCTCGAGTTTTCCCGGCTCTAAATACGGAAGAACGTGA TCAATAGTGTCACTGTATGCGTCGCGGAGAATAACCACCTTCACTTGAATGGATTTCAGCTTTTT CATCATATTCTCGACGAGTTCCATGTTCTCTCCTCTGAGATATTCGCAAAATGTGACATCGAGAG TTTCAAGCGAGAATTTCGGATTTTTCATGATTCGGTACAGATCCGACAGACCAGCTTCTACGACG GATCCTTTTGCCACGTGGGTTTCATGTTCCTTATACTCAATAGTAAATCCCTCCTCGTCTTCATC CTCATCTCGAGAGTATTGAACGTCTTCATCATCGTCATCAAAATTCATACTAAGACAAAAATTGG CAATGTTCAGTTCGATTTGCTTGAATCTGGGAGCCCGTCTGTCGA Found at i:18141799 original size:6 final size:6 Alignment explanation
Indices: 18141790--18141803 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 18141780 TACTACCACT 18141790 ACTACA ACTACA AC 1 ACTACA ACTACA AC 18141804 CAGTGAGAAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.50, C:0.36, G:0.00, T:0.14 Consensus pattern (6 bp): ACTACA Left flanking sequence: Indices 18141290 -- 18141789 CAGGTTTGTCGGAAATTTCCAATTCCGACAATTTGCCGCAACTTTTCGGCAATTTGCCGATTTTC CGGCAAATGGACAAGTTGCTATTATGATTCACATTTATAGGCTGCTTCATAGTAAATTATGATTT TCTAAATGAAACAAGTGCGAATTATCAACAAAATTGAGCTTTATTGCGCTGTGCTTCCCCGCGCT TGCTAATTTCGATTAAAAAACAGGATTACATTGGCATGCCGTAAATGAAAATCCGAATGAGGAAG CAAGCTTGGTCATGAGAAAATGCCGCAATATCTCTCATTGATCCCCCCGTGTATACAAATGATCA GTGCCTTTTCTATTTTTCTCATCTTTATTCCCTGGACTTTTATCCATGCATGCATACCTACGCAA CAGATTGAAAGTATGTGAATTCAATGATCTCCCGTTGTATATGTTCTAACATTTTAGCGACTACA TATCCTTACATAGCACCTACCACCATTACTGTCCTTACTACCACT Right flanking sequence: Indices 18141804 -- 18142303 CAGTGAGAATTAAAGGTGGAGTAGCGCCAGTGGGGAAATTATTAAAAACCACTTCTTTGGTCTCA AAATGACCGAATATCATGATACAACTTCTGAAACAATTTTTGAAATTTTTTTATTTACGGTCAGA AAGTGTCAATTACTCAGTTTTTGCCACTCATAATTTTGGAAGTCGACCAAAAAAAAATTTTTTTT TCGACATTTTTTATGTTTGAATTTTGTTTAGTTCATTTGCACTAAAACATTGTAGGGGTCGAAAC ACGCGACATTTCTTTAAATTTCCTCAAAAGCTCGTATTTTTCCAAATTTTAGCAATGTGCCAAAA CTTTCACCGGAAATTATGAAAAATCTAATTTTTTTGGGGTGTTTTATTATTACCGGTACAGAGAG TGTAGATAGTTAGAGAGTGCCAGACATCCGGGACCCAATCGGGCGGGGCGCGCGGAAGAGACGAT TTTGTGTCGATTTACGACATTCCTCGTTGTCATCATTTCGTAAAT Found at i:18145285 original size:5 final size:5 Alignment explanation
Indices: 18145275--18145287 Score: 26 Period size: 5 Copynumber: 2.6 Consensus size: 5 18145265 AGGTATTTGA 18145275 AAAAT AAAAT AAA 1 AAAAT AAAAT AAA 18145288 TGGTTTGAAT Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 8 1.00 ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15 Consensus pattern (5 bp): AAAAT Left flanking sequence: Indices 18144775 -- 18145274 GATAGCGTTGCCGTTTTATTCAGGGACGGTAGGGGCACTATAAAATTACTGTTACGTTCCCTACT TATACTTAGCATACTACTTCTTGAATACAATTAGTACTTAGACGCATACTTATTGTTAGTATAAA AGGTTTTTTAACACGCTGATTTCGATTTGAATATGACAATAGTTTACCAAAGAACAATCGGGGGT TTTCTTTAATTCCAAATTTCATTAGTCATATAGCACCTATTAATAGTCCCATAGTACCTATTAGA AATACAGTTGTTATCAAATCACATACATACTAGATACAATAAATATTATTTCAGTACTTCTCCAA TTCAAAAGTCCCACGAAATGCTGGCGCCGATAGCAGTACACGGGCACCTTGATGGGGACGCTGAC ATGTGTTAATGGAGTTTGGGAAAGGAGTGGCCTAGAAATCAATGAAGTTGAGTGTCAAGTGCTTT GACGTAGTGAAAATAAATTACGAAATATTAGTTGCAGGTATTTGA Right flanking sequence: Indices 18145288 -- 18145787 TGGTTTGAATTTAAACTTTTGGTTTTGTGGACAATTGAATATTTCCTGCAAAAATTCTTGCAAAA ATTCAATTGTTCCCTGATTTTTCTTCTTCGGGAAACACTATATAACAGCACCTAACACATTTTGC CAGTTACTTCCCATTTCTCAAAATGGTTCGTTTTTCTGTCCTCACTCTGTGTATCATATTGACTG CAACTGCCACGTCAGCGCAGGAAATTCAAAAAATGAATTTCAACGGAGTACTGAACTGTACACAT GACGCATATAAAGTTCAGCTGATGAGAATTTACGATAAAATTGGAGTGGAGGAAGTAGCATCGTG AGATTTATACATGTGTTCATATTCTTTCGATTTTATTCCAGCAATTTCGAATATCTTGGTGGTAC AACCGAATTCAGCCCATATGGACACGGAAATTACTACTCGGTTAATATAGACGCTAGTAGAGCCG GAAAAGTGAGCAAATTCTTAATTTTTAAAATTTTATATACAATGT Found at i:18148895 original size:3 final size:3 Alignment explanation
Indices: 18148887--18148901 Score: 30 Period size: 3 Copynumber: 5.0 Consensus size: 3 18148877 GTATACTTTC 18148887 AAT AAT AAT AAT AAT 1 AAT AAT AAT AAT AAT 18148902 GGTTTTAATT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 12 1.00 ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33 Consensus pattern (3 bp): AAT Left flanking sequence: Indices 18148387 -- 18148886 CGCTTGACAAGTCGGTCAAATTTCCAATTTTAACTAATTTTAGGTTATTTTTTAAGCCGCCATAA CTTTTTACTTTTGGTTTTCAACAAGTTTCATTATGAAATTCGGTGTTTTCAGACAATTTCGAGTC TAACAAGGCAATTTAAAAAAATTTCGATTACACCACCTTTACAGTGGCAATCAAACAATACTTTG AATCCTTGCCAACCGAATTCTACAGGCAGGAGATCCACAAGGATATTGACAGTATTGTTAATCAT GATCGAGCATATAACTTATTTCTTGTTTGAGTTTGCTTCGAGAAATAAATGACTGAAAAATAGGA TAGGACACTCTCCACAACCTAATACATTTCACATTGCAGTAATTGGTTTTTATGGTCGAATTTCG GAGCGTATGTCAAATTCTCTCGGCGATGAAGCGTTTGACATGTTGTGATGTATGCTGATTTTTAA ATATTAAATAGATAACATTTTTCTCCGTGGCCTTTGTATACTTTC Right flanking sequence: Indices 18148902 -- 18149401 GGTTTTAATTTTTTCTTTCAAATTATTTCAATTATTTTCAATTTTTTACAGCTGCCGATTTTTAT TGTAAAATGCATACACTGTACAAGTGAGTTAGCGTGAAAATTGAAACTGATAAGGAATTAAACTT TCAGAATTCTTCTCGCAGTTCTCTACGTGCTCATTATTATCGCAATTTTCATGTTTGTCTTCCTA TGGGTCTTAGTTATTTTGGATATTATCAAGATTCTTGGTAAAATTAAAAAGTTGAAGAAGGAAAA GAAATCGAACTGTGCTCTCAGAAAATTTTAATATATAATTTCTTACAATGAATACAGTATTTTAA TTATCAAACTCTGAAAACTTGGTTCAAACTCCTTGCTGCAGAAATTAATGTAAATTACAATCGTT GTATGCAAAATTTTTAATGTCGAGTTAGAAATTTTTGGTTGCTATACTTATACCGGCTGAGACAG CTACTCACGTCACGTTTCCGCTGCAACAAAACTCTAATAACAAAA Found at i:18156260 original size:6 final size:6 Alignment explanation
Indices: 18156249--18156262 Score: 28 Period size: 6 Copynumber: 2.3 Consensus size: 6 18156239 CGAGATCTGA 18156249 AAGCCT AAGCCT AA 1 AAGCCT AAGCCT AA 18156263 AACCCAAAAC Statistics Matches: 8, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 8 1.00 ACGTcount: A:0.43, C:0.29, G:0.14, T:0.14 Consensus pattern (6 bp): AAGCCT Left flanking sequence: Indices 18155749 -- 18156248 TCGATTTGCTGGAAACTTTAAGTTCCGGTAAATTGCCGGCTTGTCAAATTTGCCTAAAGTTTTCT ATTCCGGCACATTGCCGGTTTGCCGATTTGCCGGGAATTCTCAGTTCCGGCAAATAACCGGATTG CCGATTTGCCGGAAACTTTAAGTTACGGCAGATTGCCTGTTTGCCGATTTGCCGGAAATTTTCAA TTCCGGCACATTGCCGTTTTGCCGATATGTTGGAAATTTCAAATTCCGGCAGATTGCCGATTTGC CGATTTGCCGGAAACTTTCAGTTTCGGTAAATTGTTGGCTTGTCAAATTTGCCTAAAATTTTCTA TTCCGGCACATTGCAGGTTTGCCGATTTGCCGGAAAATTTAATTTTTGTGAAATTTGGCGATATG CTAATTTGCCGGAAAAAATCGATTGCCGCCCACCCCTGCTACCAGCCTAGAAGTCCTAAGCCTAG GCAAAACCCAAGATTTAGGCCCCAAAACAAAGCGTCGAGATCTGA Right flanking sequence: Indices 18156263 -- 18156762 AACCCAAAACCACAGGCCTCTGCCCTACCTAGGCCAGTCCAAGCCTCTTAAACCTCGGGCCCTAA AACAAAATTTGAGGGCTTAAGCCTAGAACTCTAAGCCAACGGAATAGGCCCTAAACCTGGGGTCT CTGTATAAAAGCTTGATCTATCTAGCCTGGTAACTTTTACCATTTCAGGCCACTCCAGTGACCGA ATCTCTGGAGTATCTGAGACCACAAAGCTCCGGATCTACAATACAATTGCTCTGGGCGCCAGCGC TGTATTTCTAGCTGCTCTTGGTTTTGTGAAGGAAGGCCAAGGACTGACTGGCCTGATACTCATGA CTGTAGCAACCGCGATGTTCGGATTCAATGGTGGAGGTTTTATTAAGGTACTCTACAAATAATTG AATAAAAAATAAAAAATAAAAAATATAAAATTCCAGTGCGCCGCCCTTGTCTCCCGACAGCACAA TCATTTTGTCATGGCAAACGTCCAGTTTCTGCTGTGCCTCTCGAT Found at i:18160116 original size:6 final size:6 Alignment explanation
Indices: 18160105--18160117 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 18160095 TTTATTTGAT 18160105 TATGTG TATGTG T 1 TATGTG TATGTG T 18160118 TCTATTGGTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54 Consensus pattern (6 bp): TATGTG Left flanking sequence: Indices 18159605 -- 18160104 ACAAGAAAACTATATAGTAGGCAAAAAGACAGATACACCCGTACGGACGATCCAGACTATAAAAA CGCAACCGAACGCAATGAACTGTTTAATTTATCTTCCCTAGAATCTCGAAGAATGGCTATTGATA GAAAATTCATTAAGCGAATGCTGGCGAAAAAAGTTGATATTGATACAAATAAATTCTTTGAAATT GATAAAAACAACAAAACTCGCACCAAAACAAAGTTCATCTGGGCGAAGTGCAAAACAAAATTAAG AAGGCATTTTTTCGCAAATAGGGCTCTTAGTACTTTTAAAGGTTAGTGTGGTCTAATTGGATATT GTCAAGTCCCAAAAATTGCCTAGTTAGCTGTATTCTTTACCCTCTTCATATGTTTTCTTGCATTG TCTCTCTACTAATCTCAATTTCAGGTGATAATTATACACTTTACATGTCAATTGATTATTATGTA TTTCTTATGACTATGTTTCTTTTTATATTGATTGCTTTATTTGAT Right flanking sequence: Indices 18160118 -- 18160617 TCTATTGGTATTTAATTTTTTACACGATTAACTAATCGTATCAAAATAAATAAATAAATGAAGTC GGCTTGACAGCTTCTCAGATTTTAGTTGTACGCTTAAATTGAACTGAGACCTGGATTTACCAGGG TGCCGCTGTCAGAATTTCCGAATAGTACCAATACCACAGTACAGTACAGTAGTACCACAGTGCCG AGGACCCCAGCTACCGGCCCGGCCAGCACCCTCTAGGAGCAATTTTCGATACTGATCTCTGATTT CTGATTTCCATGTGGTCTGCCTAATCATATTTTGTTCTATGTACCCCGTGCTTCAAGAAAACACT TACTTGGTCAATTGAACTGTTGTCTTATCATAGACGTGTGCTTCCTATTTTTACGGGTTTCTTTC CGGGGTTTTCAGGTTTTATTGACCATTAAAAATTGACTCCGCCTTTATTAAAGACTATATTCCAT TATGAACTCTCATTTTCTCTGCTCCATCATGATCAGGTTAACACT Found at i:18160170 original size:4 final size:4 Alignment explanation
Indices: 18160161--18160176 Score: 32 Period size: 4 Copynumber: 4.0 Consensus size: 4 18160151 AATCGTATCA 18160161 AAAT AAAT AAAT AAAT 1 AAAT AAAT AAAT AAAT 18160177 GAAGTCGGCT Statistics Matches: 12, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 12 1.00 ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25 Consensus pattern (4 bp): AAAT Left flanking sequence: Indices 18159661 -- 18160160 CTATAAAAACGCAACCGAACGCAATGAACTGTTTAATTTATCTTCCCTAGAATCTCGAAGAATGG CTATTGATAGAAAATTCATTAAGCGAATGCTGGCGAAAAAAGTTGATATTGATACAAATAAATTC TTTGAAATTGATAAAAACAACAAAACTCGCACCAAAACAAAGTTCATCTGGGCGAAGTGCAAAAC AAAATTAAGAAGGCATTTTTTCGCAAATAGGGCTCTTAGTACTTTTAAAGGTTAGTGTGGTCTAA TTGGATATTGTCAAGTCCCAAAAATTGCCTAGTTAGCTGTATTCTTTACCCTCTTCATATGTTTT CTTGCATTGTCTCTCTACTAATCTCAATTTCAGGTGATAATTATACACTTTACATGTCAATTGAT TATTATGTATTTCTTATGACTATGTTTCTTTTTATATTGATTGCTTTATTTGATTATGTGTATGT GTTCTATTGGTATTTAATTTTTTACACGATTAACTAATCGTATCA Right flanking sequence: Indices 18160177 -- 18160676 GAAGTCGGCTTGACAGCTTCTCAGATTTTAGTTGTACGCTTAAATTGAACTGAGACCTGGATTTA CCAGGGTGCCGCTGTCAGAATTTCCGAATAGTACCAATACCACAGTACAGTACAGTAGTACCACA GTGCCGAGGACCCCAGCTACCGGCCCGGCCAGCACCCTCTAGGAGCAATTTTCGATACTGATCTC TGATTTCTGATTTCCATGTGGTCTGCCTAATCATATTTTGTTCTATGTACCCCGTGCTTCAAGAA AACACTTACTTGGTCAATTGAACTGTTGTCTTATCATAGACGTGTGCTTCCTATTTTTACGGGTT TCTTTCCGGGGTTTTCAGGTTTTATTGACCATTAAAAATTGACTCCGCCTTTATTAAAGACTATA TTCCATTATGAACTCTCATTTTCTCTGCTCCATCATGATCAGGTTAACACTACTTCTATTCGGGC TATTGGGAGCCGCCACAGCACAGAACTGTAACACCGGTGGGATTT Found at i:18160293 original size:5 final size:5 Alignment explanation
Indices: 18160283--18160298 Score: 32 Period size: 5 Copynumber: 3.2 Consensus size: 5 18160273 TACCAATACC 18160283 ACAGT ACAGT ACAGT A 1 ACAGT ACAGT ACAGT A 18160299 GTACCACAGT Statistics Matches: 11, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 5 11 1.00 ACGTcount: A:0.44, C:0.19, G:0.19, T:0.19 Consensus pattern (5 bp): ACAGT Left flanking sequence: Indices 18159783 -- 18160282 ATAAATTCTTTGAAATTGATAAAAACAACAAAACTCGCACCAAAACAAAGTTCATCTGGGCGAAG TGCAAAACAAAATTAAGAAGGCATTTTTTCGCAAATAGGGCTCTTAGTACTTTTAAAGGTTAGTG TGGTCTAATTGGATATTGTCAAGTCCCAAAAATTGCCTAGTTAGCTGTATTCTTTACCCTCTTCA TATGTTTTCTTGCATTGTCTCTCTACTAATCTCAATTTCAGGTGATAATTATACACTTTACATGT CAATTGATTATTATGTATTTCTTATGACTATGTTTCTTTTTATATTGATTGCTTTATTTGATTAT GTGTATGTGTTCTATTGGTATTTAATTTTTTACACGATTAACTAATCGTATCAAAATAAATAAAT AAATGAAGTCGGCTTGACAGCTTCTCAGATTTTAGTTGTACGCTTAAATTGAACTGAGACCTGGA TTTACCAGGGTGCCGCTGTCAGAATTTCCGAATAGTACCAATACC Right flanking sequence: Indices 18160299 -- 18160798 GTACCACAGTGCCGAGGACCCCAGCTACCGGCCCGGCCAGCACCCTCTAGGAGCAATTTTCGATA CTGATCTCTGATTTCTGATTTCCATGTGGTCTGCCTAATCATATTTTGTTCTATGTACCCCGTGC TTCAAGAAAACACTTACTTGGTCAATTGAACTGTTGTCTTATCATAGACGTGTGCTTCCTATTTT TACGGGTTTCTTTCCGGGGTTTTCAGGTTTTATTGACCATTAAAAATTGACTCCGCCTTTATTAA AGACTATATTCCATTATGAACTCTCATTTTCTCTGCTCCATCATGATCAGGTTAACACTACTTCT ATTCGGGCTATTGGGAGCCGCCACAGCACAGAACTGTAACACCGGTGGGATTTATAATTCGCAGT TTAATAGGTATGTTTCTTTGATGATGGTTACCTACCTACCTACCTGTCCGTTCTCCAGATGCTAC CAATACTTCACCGCCCCCGCTCAATTCTCATTTGCCGAACAGCAA Found at i:18160726 original size:4 final size:4 Alignment explanation
Indices: 18160717--18160733 Score: 34 Period size: 4 Copynumber: 4.2 Consensus size: 4 18160707 TGATGATGGT 18160717 TACC TACC TACC TACC T 1 TACC TACC TACC TACC T 18160734 GTCCGTTCTC Statistics Matches: 13, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 4 13 1.00 ACGTcount: A:0.24, C:0.47, G:0.00, T:0.29 Consensus pattern (4 bp): TACC Left flanking sequence: Indices 18160217 -- 18160716 TAAATTGAACTGAGACCTGGATTTACCAGGGTGCCGCTGTCAGAATTTCCGAATAGTACCAATAC CACAGTACAGTACAGTAGTACCACAGTGCCGAGGACCCCAGCTACCGGCCCGGCCAGCACCCTCT AGGAGCAATTTTCGATACTGATCTCTGATTTCTGATTTCCATGTGGTCTGCCTAATCATATTTTG TTCTATGTACCCCGTGCTTCAAGAAAACACTTACTTGGTCAATTGAACTGTTGTCTTATCATAGA CGTGTGCTTCCTATTTTTACGGGTTTCTTTCCGGGGTTTTCAGGTTTTATTGACCATTAAAAATT GACTCCGCCTTTATTAAAGACTATATTCCATTATGAACTCTCATTTTCTCTGCTCCATCATGATC AGGTTAACACTACTTCTATTCGGGCTATTGGGAGCCGCCACAGCACAGAACTGTAACACCGGTGG GATTTATAATTCGCAGTTTAATAGGTATGTTTCTTTGATGATGGT Right flanking sequence: Indices 18160734 -- 18161233 GTCCGTTCTCCAGATGCTACCAATACTTCACCGCCCCCGCTCAATTCTCATTTGCCGAACAGCAA TGTAACCTCCTCGGTGGCCACCTTGCCTCCGTCCAGAACGGCCAAGAAAACGCTCTTCTCCAGTC AAATGCAGCCAACTCTTTCAAAAAATCCAACTACTCCGATTACTGGATCGGAGCCAACGATCTCG AGACATCTGGTACCTGGAAATGGACAGATCCATCAGTGACATTTGATTATTCCAACTGGCAACTC GGCGAGCCTCAATCCGGAAGTGATTGTGCAATTCAGGATAAGGGAGACGGAACCTGGTCGGCTAT TGGATGTACTTCCTACAGGCCATATTTATGTGTTACTCCTGTTATTATGACTGCCACGTGTCCAC CAATCACTACACCCATTCGTAAGTGAACTAAAACATCAATTTGAATTTCGTGCCATTGTGAAATG AAACTCATTTGAAATATTGTCATCACCACGTGGTGTAAGCGTGTC Found at i:18169491 original size:2 final size:2 Alignment explanation
Indices: 18169484--18169500 Score: 34 Period size: 2 Copynumber: 8.5 Consensus size: 2 18169474 GCTGTCTGGG 18169484 CT CT CT CT CT CT CT CT C 1 CT CT CT CT CT CT CT CT C 18169501 ACTTTACTCA Statistics Matches: 15, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 2 15 1.00 ACGTcount: A:0.00, C:0.53, G:0.00, T:0.47 Consensus pattern (2 bp): CT Left flanking sequence: Indices 18168984 -- 18169483 CAGGCTTAAGCTTAGGCTTGGCGTCAGTGGCGAGCGTTAGCTCGCTACTTCTCTTCTACTTCTTC TCGCTACTTCTTTTACGCTCCAAACGCAAGGAAAGATCTTCTTGTAGACTTTTTAAGAGGGTTAG GCTTTAGCTTAGGCTTAAGCTAAGGTTTAGGCTTACATTAAGGCTTGGGCTTAGGCGCCCGTTTT TTCGTTGAGAGACCATATGACGAGACCACAGATCAGGGCTGCGCGGCAATCGGAAATTTCCGGCA ATCGGCAATTTTCAAACCTAGTTTTATTTTGGAGAGTGAAAATTTTCACCTTGTTTTTTTAGTAT TCGGTTAGTCATTTTCTAAAAGAAAATGGTTAATCCTTGAAGGACTAAAACATTTCGAGCTTGAG AAGAGAAAATTGTTCATTAAAACGCCGAAATTGCCGAAATCGCCGAAAATTCGATTGCCGAACAG CAATTGCTGCGCACCCCTACCACAGATAGTGTCTAGCTGTCTGGG Right flanking sequence: Indices 18169501 -- 18170000 ACTTTACTCAACTAACCGCCTTTTGTCTCTCCCGGCACATATCACTTCTTCTCAAAAGCTCCTCC ATCTTCTCAAAATTTCTTCGCTGTTCGGCTTTTGGTAAAGTCTGAAAAAATTGATGATAATTCAT AAAAAAAAAGAAAAAAACTGTACCGTATCCATCCAGTGTTCAGAATTTTCTCTCAGCTGAAATAT GCTCAATTATTGGGCGCGAAACTGCAAAAATTCAAAATAACCTCTTTTATAATATCGCCCCAAGT CTCATTTTTGTATTTCGCAGCAATTTGTTTTTGAGTTTTGGGCATTTTGCTCGAAGCAACTGCCA AAAGGCGAAATAAATTTTTTTCAAATTTAAAATTCGAGAAAAAAGTTCCAAATATGTCCACGTGG ATCCAACAAACTCCCTATATTTTTTGTTGAAATTTTGGTTCACGTGAAAAAAGTTAAATTTTTGT TTCAAATTTTTAATCAAAAAAACACATTTTTAGAATTTTTACAGC Found at i:18171523 original size:6 final size:6 Alignment explanation
Indices: 18171512--18171524 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 18171502 TGGAAATCAA 18171512 ACGGTC ACGGTC A 1 ACGGTC ACGGTC A 18171525 AATTTTTTTA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.23, C:0.31, G:0.31, T:0.15 Consensus pattern (6 bp): ACGGTC Left flanking sequence: Indices 18171012 -- 18171511 ATAAATTGGAAATAGTTTCAAATCATCATTTTTGTTGGCAATTTGGCTAAACGGGTTCACGTGAA ATTTCATTGTACAAGATTTTTTCTAAATCTTCATGAAGTATGCCTGCCTGTAGGTAGACAGGCCT CTAGGCTACAAACTATAAACTACAAACAAACTACAAAGAAAATTTATTCGTTAAAAAAATCGTTA AATTGAAATCCCAAAAAATCAATAATTTTGATCTCAAAAAGAGCACCATGAACACAAAGAAGCCG GTGACGTCATCATTTCCAGAATTCCCATGTCATTTTGAAGATTTTCAGAATTTTCATACGAGTCG GCCAAAAACTCGTTTTCCTCTTCTCCACGTGGAGTACACTGGACCTCCTGAAATTTTTAGGTGTT TTTATTTGTTTGTCTGTTTGTCCGGTTTTTTTCAATTCCTGGAATCTGTAGTCAGCCCCATTTTG GCAAGAAATTCAAACTTCGGCCAATTTTTTTTAGCTGGAAATCAA Right flanking sequence: Indices 18171525 -- 18172024 AATTTTTTTACGAATTTTGTAACAAAAAAAAGCCGGAAAACAAACAAATAATTTAGTCACAACTT TTTGGACGCTAAACAATAAATCAATCAATCGGAAAACCCAATAATTTTATTCATTTTGACGAGAG TTCAATTTAAAGCGGGAAAATGCGAATTCCGTACGTGTTGAGATAAATAAGAACAAAGAAACACA GACAAATAACCCAAATGCCGATCATTGTCCAGAAGAAAATTTTCACGTTTTTCTGGAAAGATTTT AATTTTACTTGATAAAAATTTCTGGAATTTCTATTAAAAACTGCTTTTTTCTTAAAATTTTCGAG AAAAAATTCTAAAATGGCGGGGGTGTAATACACAAGTACCCAATATTTTCTTTATACCTTTACCG CCCATGCTTGTGAGCAAACCGTTGGGCTGCTTTTCTGTGGAAAATTACAAATTTCAGTCAATTTT TGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCA Found at i:18174070 original size:3 final size:3 Alignment explanation
Indices: 18174062--18174082 Score: 42 Period size: 3 Copynumber: 7.0 Consensus size: 3 18174052 AACTGTCAGC 18174062 GGT GGT GGT GGT GGT GGT GGT 1 GGT GGT GGT GGT GGT GGT GGT 18174083 TCGTTTCCTC Statistics Matches: 18, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 3 18 1.00 ACGTcount: A:0.00, C:0.00, G:0.67, T:0.33 Consensus pattern (3 bp): GGT Left flanking sequence: Indices 18173562 -- 18174061 AGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGT CAATTTTTTAGCGGGAAATTTGAATTTTCAGTCAATTTTTATCTGGAACTTCAAATTTTCAGTCA ATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATT TTTTAGCGGGAAATTTGAATTTTCAGTCAATTTTTATCTGGAACTTCAAATTTTCAGTCAATTTT TGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGAAAATTCAAAATTTTTGTCAATTTTTGG CGGGAGTATCAACGCAAAAAAACTCACGATCTTGTTCTTCAACTTTTTGATTTTTGCCTTATTGC CTCTTGGCTTCTTGAGCGATGGATTCGATTCGGGCAACTTCTGAACTCCATCACCACTTGTCACT TTTGCTCCATTATCCGAAATAAGTGCGTCTTGAGCAACTGTCAGC Right flanking sequence: Indices 18174083 -- 18174582 TCGTTTCCTCCGACTGCCGGCGCATTTGGATCCAGAATCGCTAGATTTTGATACTCATTGCCGTC GGATTTCAATAAATTATTTGTTGGATCAAAGAATGGATCACCCATTGTTTTCAGAATGTGAGAAT TCCTAGTTTTTGATTTGCCACCAAACTTTTTTGAAATTGAAATGAATAGAATTTTGAAGAAGGAG AAGGAAAAAGGATGGGGGAGAGTTTGGATTTTTTGAAAGTTCACGTATTTTCAAAATGAGAACAA CAAGATTTGGGTACTTGTGTATTATATCTTCGCCATTTTAGAAATTAATCAAATTTCCATTAATT TATCCGTTTTAACTAATCGTGATACCCATTTTCTTCGTTAGGCTAAAAATGGTGTTTTCGTAATA GTATGCCTAAAAATACAAAAAAATTCCACACGTGTTCAAAAAATTCTGCAATGGCGATAATACAC AAGTACCCAAATCTTGTTATTCACTTTTTGAAAATACGTGAACTT Found at i:18174254 original size:6 final size:6 Alignment explanation
Indices: 18174243--18174255 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 18174233 CCAAACTTTT 18174243 TTGAAA TTGAAA T 1 TTGAAA TTGAAA T 18174256 GAATAGAATT Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38 Consensus pattern (6 bp): TTGAAA Left flanking sequence: Indices 18173743 -- 18174242 ATTTTCAGTCAATTTTTTAGCGGGAAATTTGAATTTTCAGTCAATTTTTATCTGGAACTTCAAAT TTTCAGTCAATTTTTGGCGGGAAATTCAAATTTTCAGTCAATTTTTGGCGGAAAATTCAAAATTT TTGTCAATTTTTGGCGGGAGTATCAACGCAAAAAAACTCACGATCTTGTTCTTCAACTTTTTGAT TTTTGCCTTATTGCCTCTTGGCTTCTTGAGCGATGGATTCGATTCGGGCAACTTCTGAACTCCAT CACCACTTGTCACTTTTGCTCCATTATCCGAAATAAGTGCGTCTTGAGCAACTGTCAGCGGTGGT GGTGGTGGTGGTGGTTCGTTTCCTCCGACTGCCGGCGCATTTGGATCCAGAATCGCTAGATTTTG ATACTCATTGCCGTCGGATTTCAATAAATTATTTGTTGGATCAAAGAATGGATCACCCATTGTTT TCAGAATGTGAGAATTCCTAGTTTTTGATTTGCCACCAAACTTTT Right flanking sequence: Indices 18174256 -- 18174755 GAATAGAATTTTGAAGAAGGAGAAGGAAAAAGGATGGGGGAGAGTTTGGATTTTTTGAAAGTTCA CGTATTTTCAAAATGAGAACAACAAGATTTGGGTACTTGTGTATTATATCTTCGCCATTTTAGAA ATTAATCAAATTTCCATTAATTTATCCGTTTTAACTAATCGTGATACCCATTTTCTTCGTTAGGC TAAAAATGGTGTTTTCGTAATAGTATGCCTAAAAATACAAAAAAATTCCACACGTGTTCAAAAAA TTCTGCAATGGCGATAATACACAAGTACCCAAATCTTGTTATTCACTTTTTGAAAATACGTGAAC TTTCAAAAAATCCAAACTCTCCCCCTGCCCCTGCTTGTGAGCAAACCGTTGGGCTGCTTTTCAGT GTGAAATTCAAAAATACAGCCAATTTTTGGCAGGAAATTCAAATTTCCAGTCAATTTTTGGCGAG AAATTCAAATGTACAGTAAATTTTTGGAAGACAATTTGAATTTTT Found at i:18174281 original size:6 final size:6 Alignment explanation
Indices: 18174270--18174282 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 18174260 AGAATTTTGA 18174270 AGAAGG AGAAGG A 1 AGAAGG AGAAGG A 18174283 AAAAGGATGG Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.54, C:0.00, G:0.46, T:0.00 Consensus pattern (6 bp): AGAAGG Left flanking sequence: Indices 18173770 -- 18174269 TTTGAATTTTCAGTCAATTTTTATCTGGAACTTCAAATTTTCAGTCAATTTTTGGCGGGAAATTC AAATTTTCAGTCAATTTTTGGCGGAAAATTCAAAATTTTTGTCAATTTTTGGCGGGAGTATCAAC GCAAAAAAACTCACGATCTTGTTCTTCAACTTTTTGATTTTTGCCTTATTGCCTCTTGGCTTCTT GAGCGATGGATTCGATTCGGGCAACTTCTGAACTCCATCACCACTTGTCACTTTTGCTCCATTAT CCGAAATAAGTGCGTCTTGAGCAACTGTCAGCGGTGGTGGTGGTGGTGGTGGTTCGTTTCCTCCG ACTGCCGGCGCATTTGGATCCAGAATCGCTAGATTTTGATACTCATTGCCGTCGGATTTCAATAA ATTATTTGTTGGATCAAAGAATGGATCACCCATTGTTTTCAGAATGTGAGAATTCCTAGTTTTTG ATTTGCCACCAAACTTTTTTGAAATTGAAATGAATAGAATTTTGA Right flanking sequence: Indices 18174283 -- 18174782 AAAAGGATGGGGGAGAGTTTGGATTTTTTGAAAGTTCACGTATTTTCAAAATGAGAACAACAAGA TTTGGGTACTTGTGTATTATATCTTCGCCATTTTAGAAATTAATCAAATTTCCATTAATTTATCC GTTTTAACTAATCGTGATACCCATTTTCTTCGTTAGGCTAAAAATGGTGTTTTCGTAATAGTATG CCTAAAAATACAAAAAAATTCCACACGTGTTCAAAAAATTCTGCAATGGCGATAATACACAAGTA CCCAAATCTTGTTATTCACTTTTTGAAAATACGTGAACTTTCAAAAAATCCAAACTCTCCCCCTG CCCCTGCTTGTGAGCAAACCGTTGGGCTGCTTTTCAGTGTGAAATTCAAAAATACAGCCAATTTT TGGCAGGAAATTCAAATTTCCAGTCAATTTTTGGCGAGAAATTCAAATGTACAGTAAATTTTTGG AAGACAATTTGAATTTTTAGCCAATTTTTGGCTAGTTTTGATAAT Found at i:18174613 original size:6 final size:6 Alignment explanation
Indices: 18174602--18174614 Score: 26 Period size: 6 Copynumber: 2.2 Consensus size: 6 18174592 CCAAACTCTC 18174602 CCCCTG CCCCTG C 1 CCCCTG CCCCTG C 18174615 TTGTGAGCAA Statistics Matches: 7, Mismatches: 0, Indels: 0 1.00 0.00 0.00 Matches are distributed among these distances: 6 7 1.00 ACGTcount: A:0.00, C:0.69, G:0.15, T:0.15 Consensus pattern (6 bp): CCCCTG Left flanking sequence: Indices 18174102 -- 18174601 GCGCATTTGGATCCAGAATCGCTAGATTTTGATACTCATTGCCGTCGGATTTCAATAAATTATTT GTTGGATCAAAGAATGGATCACCCATTGTTTTCAGAATGTGAGAATTCCTAGTTTTTGATTTGCC ACCAAACTTTTTTGAAATTGAAATGAATAGAATTTTGAAGAAGGAGAAGGAAAAAGGATGGGGGA GAGTTTGGATTTTTTGAAAGTTCACGTATTTTCAAAATGAGAACAACAAGATTTGGGTACTTGTG TATTATATCTTCGCCATTTTAGAAATTAATCAAATTTCCATTAATTTATCCGTTTTAACTAATCG TGATACCCATTTTCTTCGTTAGGCTAAAAATGGTGTTTTCGTAATAGTATGCCTAAAAATACAAA AAAATTCCACACGTGTTCAAAAAATTCTGCAATGGCGATAATACACAAGTACCCAAATCTTGTTA TTCACTTTTTGAAAATACGTGAACTTTCAAAAAATCCAAACTCTC Right flanking sequence: Indices 18174615 -- 18175114 TTGTGAGCAAACCGTTGGGCTGCTTTTCAGTGTGAAATTCAAAAATACAGCCAATTTTTGGCAGG AAATTCAAATTTCCAGTCAATTTTTGGCGAGAAATTCAAATGTACAGTAAATTTTTGGAAGACAA TTTGAATTTTTAGCCAATTTTTGGCTAGTTTTGATAATTAAAAAATAAAAAACGTTCACCGTCTC CTGGAGCTCACTCATTTTAGGTAAATCTCAAAAAAATTCAAATCAGAAAAATTGTAAATGTCGAT TTTTTTTAGTTTTTTGAAACTGAAAACATGTTCAAAGTTTACGTAAAACGCAAAAAATATTATAA TTTTTAAAGAAATTTTAAATTTAATTGCTTCTATAAAAATCGCCGTTTTAAATAGGAAAATTTAT TGGAAAAGGTCAATTTAAGTGAAGAGCTAGAGTAGATGTCGAATTCCTGTAGGTTACGATGTCAG ATCTGGAAATTTGAAATTTTCAGATTTTTTAGATAACATATCAAA Found at